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Characterization of the complete mitochondrial genome and phylogenetic analysis of Curvularia clavata

CAO Yi, CHEN Dairong, LI Zhimo, ZHANG Mingya, HE Shifang, LU Ning

Mycosystema, 2023, 42(12): 2407-2421. DOI: 10.13346/j.mycosystema.230148

Fig. 6 Phylogenetic tree of 18 species constructed using maximum likelihood method based on whole genome sequence.

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Fig. 1 Mitochondrial complete genome of YC1106.
Table 1 Base composition of the mitochondrial genome of Curvularia clavata
Fig. 2 Mitochondrial genome size (A), repeat sequences (B and C) and number of introns (D) of Pleosporaceae.
Table 2 Introns in the mitochondrial genome of Curvularia clavata
Fig. 3 Codons of protein coding genes (PCGs) in the mitochondrial genome of Curvularia clavata.
Table 3 GC content of mitochondrial genomes of Curvularia clavata and allied species
Fig. 4 Relationship between effective codons and GC3s in the mitochondrial genomes of Curvularia clavata and allied species. A: Codon usage preference analysis among different species using ENC (Nc) and GC3s. X-axis represents the GC content in the third codon position of genes, while Y-axis represents the ENC value of each gene; The red curve is a standard curve that undergoes random mutations while the blue curve fits the scatter plot. B: PR2 analysis of the effect of selection pressure on codon usage patterns. X-axis represents GC-bias, calculated as G3s/(G3s+C3s), while Y-axis represents AT-bias, calculated as A3s/(A3s+T3s). Dots represent genes from samples, and colors of the dots represent different samples.
Fig. 5 Comparative genomic analysis of mitochondrial genomes in allied species. A: Collinearity of mitochondrial genomes in allied species. From top to bottom: Curvularia clavata, C. trifolii, Bipolaris cookei, B. oryzae, B. sorokiniana and Exserohilum rostratum. B: Selection pressure of the coding genes in different species.

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