Mycol. Res. 108 (9): 1003–1010 (September 2004). f The British Mycological Society
1003
DOI: 10.1017/S0953756204000772 Printed in the United Kingdom.
Sebacinales : a hitherto overlooked cosm of
heterobasidiomycetes with a broad mycorrhizal potential*
Michael WEISS1**, Marc-André SELOSSE2, Karl-Heinz REXER3, Alexander URBAN4
and Franz OBERWINKLER1
1
Botanisches Institut, Universität Tübingen, Auf der Morgenstelle 1, D-72076 Tübingen, Germany.
UMR CNRS 7138, Syste´matique, Adaptation et Evolution, Muse´um d’Histoire Naturelle, 43 rue Cuvier,
F-75005 Paris, France.
3
Fachbereich Biologie, Universität Marburg, Karl-von Frisch-Straße 1, D-35032 Marburg, Germany.
4
Institut für Botanik, Universität Wien, Rennweg 14, A-1030 Wien, Austria.
E-mail : michael.weiss@uni-tuebingen.de
2
Received 28 April 2004; accepted 16 June 2004.
Within the basidiomycetes, the vast majority of known mycorrhizal species are homobasidiomycetes. It was therefore
surprising when molecular and ultrastructural studies revealed a broad diversity of mycorrhizal associations involving
members of the heterobasidiomycetous Sebacinaceae, fungi which, due to their inconspicuous basidiomes, have been
often overlooked. To investigate the phylogenetic position of the Sebacinaceae within the basidiomycetes and to infer
phylogenetic relationships within the Sebacinaceae, we made molecular phylogenetic analyses based on nuclear rDNA.
We present a well-resolved phylogeny of the main lineages of basidiomycetes which suggests that the Sebacinaceae is the
most basal group with known mycorrhizal members. Since more basal taxa of basidiomycetes consist of predominantly
mycoparasitic and phytoparasitic fungi, it seems possible that a mycorrhizal life strategy, which was transformed into a
saprotrophic strategy several times convergently, is an apomorphic character for the Hymenomycetidae. Mycorrhizal taxa
of Sebacinaceae, including mycobionts of ectomycorrhizas, orchid mycorrhizas, ericoid mycorrhizas, and jungermannioid
mycorrhizas, are distributed over two subgroups. One group contains species with macroscopically visible basidiomes,
whereas members of the other group probably lack basidiomes. Sebacina appears to be polyphyletic; current species
concepts in Sebacinaceae are questionable. Sebacina vermifera sensu Warcup & Talbot consists of a broad complex of
species possibly including mycobionts of jungermannioid and ericoid mycorrhizas.
This wide spectrum of mycorrhizal types in one fungal family is unique. Extrapolating from the known rDNA
sequences in Sebacinaceae, it is evident that there is a cosm of mycorrhizal biodiversity yet to be discovered in this group.
Taxonomically, we recognise the Sebacinaceae as constituting a new order, the Sebacinales.
INTRODUCTION
Molecular phylogenetic studies (Weiß & Oberwinkler
2001) have revealed that the heterobasidiomycetous
family Sebacinaceae does not belong to the Auriculariales, a group of wood-decaying fungi in which it had
been placed mainly on the basis of ultrastructural and
microscopical characters (Bandoni 1984). This was a
surprise since species of the Sebacinaceae are morphologically very similar to members of the Auriculariales
with which they share, for example, the longitudinally
septate basidia. Subsequently a growing number of
DNA sequences derived from plant roots were
* Part 221 of the series Studies in Heterobasidiomycetes from the
Botanical Institute, University of Tübingen, Tübingen.
** Corresponding author.
published that can be assigned to the Sebacinaceae;
it became evident that members of this family are
involved in a wide spectrum of mycorrhizal types :
ectomycorrhizas (Glen et al. 2002, Selosse, Bauer &
Moyersoen 2002, Tedersoo et al. 2003, Urban, Weiß &
Bauer 2003), orchid mycorrhizas (McKendrick et al.
2002, Selosse et al. 2002, Taylor et al. 2003), ericoid
mycorrhizas (Allen et al. 2003), and even in jungermannioid mycorrhizas, an only recently described
association with liverworts (Kottke et al. 2003). Up to
then in heterobasidiomycetes a mycorrhizal potential
was only known from some taxa that occur as orchid
symbionts (Rasmussen 2002). The broad diversity of
mycorrhizal strategies present in Sebacinaceae is
unique. This study presents the results of comprehensive molecular phylogenetic analyses using the nuclear
gene for the ribosomal large subunit (nrLSU) that
Sebacinales, overlooked mycorrhizal heterobasidiomycetes
1004
shed light on the ecology and evolution of a fascinating group of fungi whose striking biodiversity and
ecological importance has only recently started to be
recognised.
Table 1. Strains of Sebacina vermifera included in this study. These
strains were isolated from plant roots, grown in pure culture, and
determined by induction of their basidial stages by J. H. Warcup
(Warcup 1988).
MATERIAL AND METHODS
Warcup
isolate no.
GenBank
accession no.
(nrLSU)
Host plant
140
714
723
750
768
914
915
963
977
AY505548
AY505549
AF291366
AY505550
AY505551
AY505552
AY505553
AY505554
AY505555
Eriochilus scaber (Orchidaceae)
Eriochilus scaber (Orchidaceae)
Cyrtostylis reniformis (Orchidaceae)
Caladenia catenata (Orchidaceae)
Glossodia minor (Orchidaceae)
Phyllanthus calycinus (Euphorbiaceae)
Caladenia catenata (Orchidaceae)
Microtis uniflora (Orchidaceae)
Microtis uniflora (Orchidaceae)
Sample sources, DNA extraction, PCR and sequencing
DNA sequences that were determined for this study
were obtained from fungal herbarium specimens, from
mycorrhizas of different types, or from axenic fungal
cultures. Extraction of genomic DNA, PCR amplification and sequencing of the nuclear coded D1/D2 region of the ribosomal large subunit was performed as
described elsewhere : Weiß & Oberwinkler (2001) for
dried reference collections and axenic fungal cultures,
Selosse et al. (2002) for the mycorrhizas of the terrestrial orchids Epipactis helleborine and E. microphylla,
and Selosse et al. (2002) and Urban, Weiß & Bauer
(2003) for ectomycorrhizas. Provenance and plant
hosts of the mycorrhizal samples are indicated in Fig. 2.
We were pleased to be able to include in this study some
of the original Warcup Sebacina vermifera strains,
mostly isolated from Australian orchids (Warcup 1988) ;
details of these strains are provided in Table 1.
Phylogenetic analysis
These sequences were analysed together with sequences
already available in GenBank (http://www.ncbi.nlm.
nih.gov/) ; accession nos are given in Figs 1 and 2. We
analysed two data sets : (1) 65 sequences covering the
major groups of basidiomycetes to estimate the
phylogenetic placement of the Sebacinaceae ; and (2)
107 sebacinoid sequences to elucidate phylogenetic relationships within the Sebacinaceae. Alignments were
constructed using CLUSTAL X (Thompson et al.
1997) and manually edited with Se-Al (Rambaut 1996).
Ambiguous alignment positions were excluded from
the phylogenetic analyses.
To estimate phylogenetic relationships, alignments
were analysed using a Bayesian approach based on
Markov chain Monte Carlo (MCMC) as implemented
in MrBayes 3.0b4 (Huelsenbeck & Ronquist 2001).
With this method it is possible to estimate a posteriori
probabilities for the monophyly of given groups, i.e.
the probability that a group is monophyletic given the
DNA alignment.
For each alignment we ran four incrementally heated
simultaneous Monte Carlo Markov chains over ten
million generations using the general time-reversible
model of DNA substitution, additionally assuming a
percentage of invariable alignment sites with gammadistributed substitution rates of the remaining sites
(GTR+I+G; see Swofford et al. 1996), and random
starting trees. Trees were sampled every 100 generations resulting in an overall sampling of 100 000 trees,
from which the last 60 000 trees were used to compute a
50 % majority rule consensus tree to get estimates for
the posterior probabilities. Stationarity of the chains
was controlled using the Tracer software, version 1.0
(Rambaut & Drummond 2003). With the same software we calculated mean values for the parameters of
the DNA substitution model that were sampled during
the MCMC process (again using the last 60 000 samples). These mean values were then used to estimate
branch lengths of the consensus trees with PAUP
4.0b10 (Swofford 2002) via maximum likelihood.
To avoid possible pitfalls of the MCMC approach
(Huelsenbeck et al. 2002), we repeated the MCMC
analysis for each alignment four times, always starting
with random trees. We also performed neighbourjoining analyses (NJ ; Saitou & Nei 1987) using Kimura
2-parameter distances (Kimura 1980), combined with
non-parametric bootstrap analyses (Felsenstein 1985)
in PAUP.
RESULTS AND DISCUSSION
The results of the different runs of MCMC on the same
alignment yielded very similar results, only differing
slightly in posterior probability values. Stationarity
of the Markov chains was obviously reached before
10 000 trees (alignment 1) and 20 000 trees (alignment
2) had been sampled. Figs 1 and 2 each present the consensus of one of the four MCMC analyses performed
on each alignment. The results of the bootstrapped NJ
analyses (data not shown) were widely consistent to the
results of the MCMC analyses, i.e. groups supported
by bootstrap values exceeding 50 % were generally not
in conflict with groupings obtained by MCMC. An
exception is the placement of Urediniomycetes and
Ustilaginomycetes that appeared as sister groups in
the NJ analysis. Bootstrap support was generally lower
in the NJ analyses than the corresponding posterior
probabilities inferred from MCMC analyses.
Basidiomycete phylogeny
Compared to other published molecular phylogenetic
hypotheses concerning higher-level relationships in
Cortinarius mussivus AF291307
75
72
Tricholoma vaccinum AF291378
96 Kuehneromyces mutabilis AF291342
Agaricus augustus AF291286
0.05 substitutions/site
100 100
Amanita muscaria AF024465
Boletus edulis AF291300
85
100
Coniophora olivacea AF098376
73
Amphinema byssoides AF291288
Russula cyanoxantha AF291361
68 98
Echinodontium tinctorium AF393056
Homobasidiomycetes
93 Fomes fomentarius AF291331
Polyporus varius AF291356
Inonotus nodulosus AF291341
81
100
Hymenochaete rubiginosa AF291339
Basidioradulum radula AF291299
Thelephora palmata AF291265
Ramaria stricta AF287887
65 100
Phallus impudicus AY152404
Botryobasidium subcoronatum AF287850
Multiclavula mucida AF287875
100
87
Tulasnella calospora AY152407
Ceratosebacina calospora AF291304
Tulasnella/Ceratobasidium
Ceratobasidium cornigerum AY152405
Dacrymyces stillatus AF291309
99
100
99
Calocera viscosa AF011569
Dacrymycetales
Femsjonia peziziformis AF291330
58 Exidia glandulosa AF291319
69 Exidiopsis calcea AF291326
Auricularia auricula-judae AF291289
59
Bourdotia galzinii AF291301
100
99
Basidiodendron eyrei AF291296
Auriculariales
84
Endoperplexa enodulosa AY505543
Stypella vermiformis AF291369
96 86
Hyaloria pilacre AF291338
100
Myxarium nucleatum AF291351
Sebacina incrustans AF291365
78
94 Tremelloscypha gelatinosa AF291376
100
Sebacina dimitica AF291364
98
Efibulobasidium rolleyi AF291317
Sebacinales
99
Craterocolla cerasi AF291308
100
Sebacina allantoidea AF291367
100
Sebacina vermifera AF291366
76
Geastrum saccatum AF287859
Tremella mesenterica AF011570
79
Tremella foliacea AF291373
88
Sirobasidium magnum AF042241
Filobasidiella neoformans AF075484
99
Tremellomycetidae
Cuniculitrema polymorpha AY032662
99
99
Trichosporon cutaneum AF075483
100
Holtermannia corniformis AF189843
Filobasidium floriforme AF075498
Thecaphora seminis-convolvuli AF009874
100
100
Urocystis ranunculi AF009879
Ustilago hordei L20286
66
Tilletia caries L20285
Ustilaginomycetes
100
Georgefischeria riveae AF009861
Exobasidium vaccinii AF009858
87
Doassansia epilobii AF007523
Eocronartium muscicola L20280
100
Septobasidium carestianum L20289
Urediniomycetes II
Puccinia graminis L08721
50 Aurantiosporium subnitens AF009846
100
Ustilentyloma fluitans AF009882
Urediniomycetes I
Microbotryum violaceum AF009866
Taphrina deformans U94948
Hymenomycetes
1005
Hymenomycetidae
M. Weiss and others
Fig. 1. Phylogenetic placement of Sebacinales within the basidiomycetes : Bayesian Markov chain Monte Carlo analysis of
an alignment of nuclear DNA sequences from the D1/D2 region of the large ribosomal subunit. The topology was rooted
with the ascomycete Taphrina deformans. Numbers on branches are estimates for a posteriori probabilities that the respective
groups are monophyletic given the data. For more details see the text.
basidiomycetes (e.g. Swann & Taylor 1993, 1995,
Gargas et al. 1995, Begerow, Bauer & Oberwinkler
1997) the present MCMC analysis of alignment 1
(Fig. 1) offers a high resolution, especially in the backbone of the phylogenetic tree. Thus, with a posterior
probability of 99 %, rust fungi and their relatives
(Urediniomycetes I and II in Fig. 1) are basal in the
basidiomycetes. Smut fungi (Ustilaginomycetes) and
Hymenomycetes together form a monophyletic group,
possibly with the type B secondary structure of
the 5S rRNA as an apomorphy (Gottschalk & Blanz
1985).
Sebacinales, overlooked mycorrhizal heterobasidiomycetes
83 OM Neottia nidus-avis AF465190 F
OM Neottia nidus-avis + ECM AF440657 F
89 OM Neottia nidus-avis + ECM AF440641 F
OM Neottia nidus-avis + ECM AF440643 F
OM Neottia nidus-avis + ECM AF440644 F
Sebacina aff. epigaea AF291363 D
59 ECM Dryas octopetala AY452680 N
OM Neottia nidus-avis + ECM AF440649 F
OM Neottia nidus-avis AF440662 F
OM Neottia nidus-avis AF440663 F
75
OM Neottia nidus-avis + ECM AF440654 F
Tremellodendron
sp. AY505547 USA
Orchid mycorrhiza (OM)
100
72
OM Neottia nidus-avis AF440655 F
Ectomycorrhiza (ECM)
OM Hexalectris spicata AY243515 USA
ECM Salix sp. AY452682 N
Ericoid mycorrhiza (ERM)
OM Neottia nidus-avis + ECM AF440652 F
Jungermannioid mycorrhiza (JM)
75 OM Epipactis helleborine AY452678 F
OM Epipactis helleborine AY452677 F
ECM Populus tremula AJ534931 EST
82 94 OM Neottia nidus-avis AF440651 F
OM Neottia nidus-avis + ECM AF440656 F
80 OM Hexalectris spicata AY243518 USA
OM Neottia nidus-avis AY052372 D
52
ECM Dryas octopetala AY452681 N
OM Neottia nidus-avis + ECM AF440650 F
OM Neottia nidus-avis AF440660 F
A
Austria
99 OM Neottia nidus-avis + ECM AF440658 F
AUS
Australia
OM Neottia nidus-avis + ECM AF440646 F
OM Neottia nidus-avis + ECM AF440659 F
CAN Canada
OM Epipactis microphylla AY286192 F
CHN P.R. China
Sebacina sp. AY505544 USA
OM Neottia-nidus avis + ECM AF440648 F
D
Germany
OM
Neottia-nidus avis + ECM AF440647 F
67
E
Spain
OM Hexalectris revoluta AY243517 USA
ECM Picea abies AJ534930 EST
EST
Estonia
Sebacina dimitica AF291364 D
72 55
F
France
ECM Pinus sylvestris AY505562 A
98 Tremellodendron sp. AY505546 USA
IND
India
Tremellodendron pallidum AF384862 CAN
OM Hexalectris spicata AY243516 USA
MEX Mexico
99
ECM
Eucalyptus marginata AY072814 AUS
N
Norway (Svalbard)
69 OM Neottia nidus-avis + ECM AF440653 F
60 OM Epipactis helleborine AY452674 F
OM Neottia nidus-avis AY052373 UK
100 Sebacina cf. epigaea AY505560 A
OM Epipactis helleborine AY452676 F
100
98
100
OM Epipactis helleborine AY452679 F
ECM Tilia sp. AF509966 A
100 Sebacina incrustans AY143340 D
100
ECM Picea abies AF509967 A
Sebacina incrustans AF291365 D
71 Sebacina sp. AF465191 F
81 100
0.005 substitutions/site
83
Sebacina sp. AY505558 A
Sebacina cf. incrustans AY505561 A
100 Sebacina sp. AF465185 F
Sebacina sp. AF440664 F
100 Sebacina incrustans AY505545 CHN
100
ECM Corylus colurna AY505563 A
100
Sebacina epigaea AF291267 D
87
Sebacina cf. epigaea AY505559 A
ECM Tilia cordata AJ534932 EST
Tremelloscypha gelatinosa AF291376 MEX
63
100
OM Epipactis helleborine AY452675 F
87
ECM Eucalyptus marginata AY093436 AUS
ECM Eucalyptus marginata AY093438 AUS
100
Efibulobasidium rolleyi AF291317 CAN
100 Craterocolla cerasi AY505542 D
100
100
Craterocolla cerasi AF291308 D
Efibulobasidium albescens AF384860 CAN
Sebacina allantoidea AF291367 D
ERM Gaultheria shallon AF300777 CAN
ERM Gaultheria shallon AF300784 CAN
95 ERM Gaultheria shallon AF300774 CAN
ERM Gaultheria shallon AF300775 CAN
ERM Gaultheria shallon AF300783 CAN
ERM Gaultheria shallon AF300782 CAN
100 ERM Gaultheria shallon AF300781 CAN
ERM Gaultheria shallon AF300778 CAN
ERM Gaultheria shallon AF300780 CAN
ERM Gaultheria shallon AF300779 CAN
94
ERM Gaultheria shallon AY112930 CAN
ERM Gaultheria shallon AF300776 CAN
100 ERM Gaultheria shallon AF300785 CAN
ERM Gaultheria shallon AF284137 CAN
100 99 ERM Gaultheria shallon AF300786 CAN
ERM Gaultheria shallon AF300787 CAN
ERM Gaultheria shallon AF300790 CAN
98 ERM Gaultheria shallon AF284136 CAN
99
ERM Gaultheria shallon AF300788 CAN
ERM Gaultheria shallon AF300789 CAN
98
67 ERM Gaultheria shallon AF300791 CAN
87
100
ERM Gaultheria shallon AF300793 CAN
ERM Gaultheria shallon AF300792 CAN
59
JM Lophozia sudetica AY298946 E
96
91
JM Lophozia incisa AY298847 E
JM Calypogeia muelleriana AY298948 F
Sebacina vermifera (OM) AF291366 AUS
96 Sebacina vermifera (OM) AY505549 AUS
85
100
Sebacina vermifera AY505552 AUS
Sebacina vermifera (OM) AY505555 AUS
Multinucleate rhizoctonia AY505556 AUS
100
69
82
Piriformospora indica AY505557 IND
Sebacina vermifera (OM) AY505554 AUS
100
97
Sebacina vermifera (OM) AY505548 AUS
95
Sebacina vermifera (OM) AY505551 AUS
Sebacina vermifera (OM) AY505550 AUS
Sebacina vermifera (OM) AY505553 AUS
Geastrum saccatum AF287859
Fig. 2. For legend see opposite page.
1006
A
B
M. Weiss and others
Our study confirms that it is difficult to separate
homobasidiomycetes, as currently defined, from other
hymenomycetous taxa such as Tulasnellales and
Ceratobasidiales (Hibbett & Thorn 2001, Weiß, Bauer
& Begerow 2004). In our analysis, Tulasnella calospora
groups as highly supported with the lichen-forming
homobasidiomycete Multiclavula mucida, representing
the cantharelloid clade sensu Hibbett & Thorn (2001).
This position is consistent with other molecular phylogenetic analyses (e.g. Bruns et al. 1998, Hibbett, Gilbert
& Donoghue 2000, Bidartondo et al. 2003). Also with
respect to other homobasidiomycetous clades, our results are consistent with clades recognised in Hibbett &
Thorn (2001), with one exception: Geastrum was separated from the gomphoid-phalloid clade, which in
our analysis is represented by species of Ramaria and
Phallus, and appears as a sister taxon of the Sebacinaceae (see the discussion below).
Phylogenetic position of the Sebacinaceae
With a high posterior probability, the Sebacinaceae
occupy a basal position within the Hymenomycetidae,
with Geastrum as a sister group (Fig. 1). A close phylogenetic relationship between the Sebacinaceae and
Geastrum has recently also been found in another
molecular phylogenetic analysis of nrLSU D1/D2
sequences (Taylor et al. 2003). Considering that Geastrum is also capable of forming mycorrhizas (Agerer
& Beenken 1998), and the more basal groups in basidiomycetes mainly include mycoparasitic and plant
parasitic fungi (Weiß, Bauer & Begerow 2004), we hypothesise that the common ancestor of this Geastrum/
Sebacinaceae clade, or even the common ancestor of
the whole group of the Hymenomycetidae, was ectomycorrhizal. If this assumption of an apomorphic
mycorrhizal status in Hymenomycetidae holds, then the
distribution of mycorrhizal taxa within the homobasidiomycetes could be explained by multiple independent origins of saprotrophism rather than by convergent
evolution of mycorrhizas, in contrast to current hypotheses on the evolution of ectomycorrhizas in basidiomycetes (e.g. Hibbett, Gilbert & Donoghue 2000).
Regarding the phylogenetic position of the Sebacinaceae within the basidiomycetes (Fig. 1), which is
corroborated by the ecological data at hand, it is
appropriate to establish a new basidiomycetous order :
Sebacinales M. Weiß, Selosse, Rexer, A. Urb. &
Oberw., ordo nov.
Fungi Hymenomycetum. Basidia longitudinaliter septata.
Septa doliporis parenthesomatibus imperforatis, efibulata.
Cystidia nulla.
1007
Typus ordinis: Sebacinaceae Oberw. & K. Wells 1982 (in
Wells & Oberwinkler 1982: 329).
This new order can be morphologically separated from
species of Auriculariales, in which the Sebacinaceae has
been placed up to now (Bandoni 1984), by a combination of longitudinally septate basidia, imperforate
parenthesomes at the septal pores, and a lack of both
clamp connections and cystidia. The lack of cystidia
has to be included in this diagnosis since Endoperplexa
enodulosa, a species which according to our molecular
phylogenetic analyses does not belong to the Sebacinales (Fig. 1), differs from our description of Sebacinales only in the presence of cystidia (Roberts 1993).
Consequently, the order Auriculariales has to be
emended to include saprotrophic hymenomycetes with
septate basidia and septa with imperforate parenthesomes, where cystidia are present in species that lack
clamp connections. Unfortunately, this emendation
is not perfectly congruent with our molecular phylogenetic analysis. It is, in the literal meaning of the
word, an improvement in the exclusion of Sebacinales,
but not the ultimate solution, as there are taxa such
as Ceratosebacina calospora or Exidiopsis gloeophora
that fit the emended concept of Auriculariales, but obviously should be excluded from that group according
to molecular phylogenetic results (Fig. 1; Weiß &
Oberwinkler 2001). At the moment, we see no way to
solve this problem. Hopefully other characters will be
detected in the future that will allow a more elegant
morphological circumscription of both Auriculariales
and Sebacinales.
Phylogenetic relationships within Sebacinales
The MCMC hypothesis of phylogenetic relationships
in the Sebacinales shows a division into two subgroups
referred to here A and B (Fig. 2). Group A contains all
the sequences obtained from basidiomes, from ectomycorrhizas, and sebacinoid mycobionts of the orchids
Neottia nidus-avis, Epipactis and Hexalectris (i.e. of at
least partly heterotrophic orchids ; Taylor et al. 2003,
Selosse et al. 2004). Sebacina and Tremellodendron
appear to be polyphyletic.
Subgroup B contains in basal positions various
sequences of Sebacina vermifera that were obtained
from axenic fungal cultures, mostly originating from
the roots of green, autotrophic Australian orchids
(Warcup 1988; Table 1). The three sebacinoid sequences from liverwort rhizoids included in this study
(Kottke et al. 2003) appear as a monophyletic group,
which according to our MCMC analysis (Fig. 2) represents the sister group to the one containing the
sebacinoid rDNA sequences from ericoid mycorrhizas
Fig. 2. Phylogenetic relationships within Sebacinales : Bayesian Markov chain Monte Carlo analysis of an alignment of
nuclear DNA sequences from the D1/D2 region of the large ribosomal subunit. The topology was rooted with Geastrum
saccatum. Numbers on branches are estimates for a posteriori probabilities that the respective groups are monophyletic
given the data. The two main subgroups of Sebacinales discussed in the text are designated A and B. Sequences from
teleomorphic specimens are printed in bold.
Sebacinales, overlooked mycorrhizal heterobasidiomycetes
of Gaultheria shallon (Allen et al. 2003). All teleomorphs known for species in group B were observed
only in axenic culture and morphologically assigned to
Sebacina vermifera (Warcup 1988).
1008
herbarium material of S. incrustans (Lowy 1971 ; Peter
Roberts, pers. comm.), we suggest that the Sebacinales
has a wide distribution.
Mycorrhizal diversity
Generic and species concepts in Sebacinales
Our results indicate that basidiome gross morphology
is not useful for the definition of monophyletic groups
in Sebacinales, a statement which obviously can be
generalised for wide parts of a natural systematic concept in basidiomycetes (e.g. Oberwinkler 1977, Bandoni
1984, Hibbett & Thorn 2001). Thus, Sebacina, defined
for resupinate forms (Tulasne & Tulasne 1871), is polyphyletic according to the present analysis. A morphological transition from certain species of Sebacina to
Tremellodendron, a genus name introduced for clavarioid species, has been described (McGuire 1941). Our
analysis supports this point of view. Efibulobasidium,
a genus based on pustulate basidiomes (Wells 1975),
is, according to our results, another example of a probably polyphyletic group circumscribed by basidiome
morphology.
Not only the generic concept, but also the species
concepts in Sebacina appear to be questionable. The
molecular analysis shows that diverse species might be
included in the present circumscription of Sebacina
incrustans, the type of Sebacina ; the same situation
holds for S. epigaea. The problem for an accurate
delimitation of species is the lack of useful macroand microscopical characters. Obviously, biodiversity
in this group is much higher than hitherto assumed.
This is corroborated by the molecular diversity detected in mycobionts of ectomycorrhizas or orchid
mycorrhizas, from which up to now no data about
sexual stages are available. Judging from our molecular
phylogenetic hypotheses, most of the mycorrhizal mycobionts contained in subgroup A should morphologically be classified in Sebacina or Tremellodendron.
There is a particularly high probability that one of the
Neottia mycobionts (AF440655), sequenced from roots
of a French specimen of N. nidus-avis (Selosse et al.
2002), is a Tremellodendron species, since its D1/D2
sequence is identical with that obtained from a
Tremellodendron sample from North America. If they
are conspecific, this would be the first molecular evidence for a wide geographical distribution of a single
species of the Sebacinales.
It is, however, premature to speculate about geographical distribution patterns of sebacinoid species,
since the present sampling of DNA sequences of Sebacinales is strongly biased on collections from Europe,
Australia (Sebacina vermifera and mycobionts of
Eucalyptus) and North America (Gaultheria mycobionts). From the limited molecular data, however, we
can infer that both Sebacinales subgroups A and B are
distributed over Europe, Australia, and North America.
In our analysis we were able to also include a Chinese
specimen of the S. incrustans complex. Judging from
In the field, ectomycorrhizas involving Sebacinales
mycobionts have only been well documented for group
A (Glen et al. 2002, Selosse, Bauer & Moyersoen 2002,
Urban, Weiß & Bauer 2003). The potential to form
ectomycorrhizas in vitro has been demonstrated for
species of the Sebacina vermifera complex (Warcup
1988), but it is not clear whether such associations also
occur in the field. On the other hand, orchid mycorrhizal species of Sebacinales occur in both subgroups A
and B (Warcup 1988, McKendrick et al. 2002, Selosse
et al. 2002, Taylor et al. 2003), but they may not be
homologous. In subgroup A, sebacinoid mycobionts
colonise achlorophyllous species, such as Neottia nidusavis and Hexalectris spicata (Selosse et al. 2002, Taylor
et al. 2003), or green Epipactis species for which
achlorophyllous individuals exist and that are likely to
be partially heterotrophic (Selosse et al. 2004). These
orchid mycobionts also form ectomycorrhizas with diverse surrounding trees (Selosse, Bauer & Moyersoen
2002, Selosse et al. 2002, 2004), suggesting a tripartite
association, where the orchid derives resources from
the tree via the sebacinoid mycobiont, as described for
other achlorophyllous orchids (e.g. Taylor & Bruns
1997, McKendrick, Leake & Read 2000). It is therefore
possible that all of the sebacinoid orchid mycobionts of
subgroup A have ectomycorrhizal potential. Species of
the Sebacina incrustans complex cannot be grown in
pure culture (F. O., unpubl.), which may be indicative
of a strictly ectomycorrhizal life strategy for species
belonging to group A. On the other hand, orchid symbionts of group B have been isolated and grown in pure
culture (Warcup & Talbot 1967, Warcup 1988). Only
these species, and not the orchid symbionts found in
group A, may belong to the highly polyphyletic form
genus Rhizoctonia (Milligan & Williams 1987, Taylor
et al. 2003).
The Sebacina vermifera complex
The present molecular phylogenetic study includes
fungal isolates that have been assigned to Sebacina
vermifera (Warcup & Talbot 1967, Warcup 1988).
These isolates were obtained from roots of Australian
orchids and it was shown that some isolates were able
to stimulate the germination of orchid seeds and to
form ectomycorrhizas with myrtaceous species in vitro
(Warcup 1988). Concerning his isolates of S. vermifera,
which varied in microscopical measurements as well as
in growth parameters of axenic cultures, Warcup (1988)
states that ‘without further data it is difficult to decide
whether S. vermifera is a variable species or a complex
of closely allied species. ’ Our analyses strongly suggest
that S. vermifera is indeed a broad complex of species
M. Weiss and others
(Fig. 2). It is even possible that all the species that can
currently be assigned to Sebacinales subgroup B belong
to this morphologically defined complex, since the
liverwort mycobionts (Kottke et al. 2003) and those of
Gaultheria shallon (Berch, Allen & Berbee 2002, Allen
et al. 2003), which are also included in subgroup B,
have up to now only been detected by molecular or
ultrastructural means, and nothing is known about
their sexual stages.
We also included in the present study two isolates
obtained from arbuscular mycorrhizas (AM); the
multinucleate rhizoctonia DAR 29830 was isolated
from a vesicle of Glomus fasciculatum (Williams 1985,
Milligan & Williams 1987) and the anamorphic Piriformospora indica isolated from a spore of Glomus
mosseae (Verma et al. 1998). Both isolates are closely
related according to our molecular phylogenetic
analysis, which is consistent with their morphological
characters (Milligan & Williams 1987, Varma et al.
2001), and positioned among isolates of the Sebacina
vermifera complex (Fig. 2). Similar isolates were frequently obtained in Australia from pot cultures of AM,
but also from diverse host plants in the field (Milligan
& Williams 1987). So far nothing is known about the
specific diversity of these organisms, nor do we have
data about their interaction with AM fungi, but it was
shown that the isolate designated as Piriformospora
indica was able to benefit plant growth and increase
resistance against pathogens in a broad range of host
plants (Varma et al. 2001).
This phylogenetic analysis shows a broad mycorrhizal
capacity in Sebacinales, including ectomycorrhizas
(Warcup 1988, Glen et al. 2002, Selosse, Bauer &
Moyersoen 2002, Selosse et al. 2002), orchid mycorrhizas (Warcup 1988, McKendrick et al. 2002, Selosse
et al. 2002), ericoid mycorrhizas (Allen et al. 2003), and
also the recently recognised jungermannioid mycorrhizas (Kottke et al. 2003). Despite the tremendous increase of data in recent years, sampling of Sebacinales,
both geographically and with respect to the host plants,
is still erratic. The present data are but the tip of an
iceberg, as corroborated by a recent quantitative study
(Avis et al. 2003), in which 5% of the ectomycorrhizas
in a temperate oak savanna were ascribed to Sebacinales. Future studies will bring more detailed insight
into the ecology and phylogeny of this fascinating
fungal order, which may have a future economically
important plant-beneficial potential, which has hitherto been overlooked.
ACKNOWLEDGEMENTS
We thank Roland Kirschner, Volker Kummer, Peter Roberts, Ajit
Varma and Philip Williams and the National Institute of Agrobiological Sciences (Japan) for the loan of specimens or cultures, Anders
Dahlberg, Monique Gardes and Morag Glen for sharing unpublished
DNA sequences, Duur Aanen, Robert Bauer, Martin Bidartondo,
Ruth Fleischmann and Sigisfredo Garnica for critically reading
earlier drafts of the manuscript and helpful discussions, and
1009
Jacqueline Götze and Annie Tillier for technical assistance.
This study was supported by a grant of the Deutsche
Forschungsgemeinschaft (DFG) to F. O.
REFERENCES
Agerer, R. & Beenken, L. (1998) Geastrum fimbriatum Fr.+Fagus
sylvatica L. In Descriptions of Ectomycorrhizae (R. Agerer, R. M.
Danielson, S. Egli, K. Ingleby, D. Luoma & R. Treu, eds): 13–18.
Einhorn-Verlag, Schwäbisch Gmünd.
Allen, T. R., Millar, T., Berch, S. M. & Berbee, M. L. (2003) Culturing and direct DNA extraction find different fungi from the
same ericoid mycorrhizal roots. New Phytologist 160: 255–272.
Avis, P. G., McLaughlin, D. J., Dentinger, B. C. & Reich, P. B.
(2003) Long-term increase in nitrogen supply alters above- and
below-ground ectomycorrhizal communities and increases the
dominance of Russula spp. in a temperate oak savanna. New Phytologist 160: 239–253.
Bandoni, R. J. (1984) The Tremellales and Auriculariales: an
alternative classification. Transactions of the Mycological Society of
Japan 25 : 489–530.
Begerow, D., Bauer, R. & Oberwinkler, F. (1997) Phylogenetic
studies on nuclear large subunit ribosomal DNA sequences of
smut fungi and related taxa. Canadian Journal of Botany 75:
2045–2056.
Berch, S. M., Allen, T. R. & Berbee, M. L. (2002) Molecular detection, community structure and phylogeny of ericoid mycorrhizal
fungi. Plant and Soil 244: 55–66.
Bidartondo, M. I., Bruns, T. D., Weiß, M., Sérgio, C. & Read, D. J.
(2003) Specialized cheating of the ectomycorrhizal symbiosis by an
epiparasitic liverwort. Proceedings of the Royal Society of London,
Series B, Biological Sciences 270: 835–842.
Bruns, T. D., Szaro, T. M., Gardes, M., Cullings, K. W., Pan, J. J.,
Taylor, D. L., Horton, T. R., Kretzer, A., Garbelotto, M. & Li, Y.
(1998) A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis. Molecular Ecology
7: 257–272.
Felsenstein, J. (1985) Confidence limits on phylogenies: an approach
using the bootstrap. Evolution 39: 783–791.
Gargas, A., DePriest, P. T., Grube, M. & Tehler, A. (1995) Multiple
origins of lichen symbioses in fungi suggested by SSU rDNA phylogeny. Science 268: 1492–1495.
Glen, M., Tommerup, I. C., Bougher, N. L. & O’Brien, P. A. (2002)
Are Sebacinaceae common and widespread ectomycorrhizal associates of Eucalyptus species in Australian forests? Mycorrhiza 12:
243–247.
Gottschalk, M. & Blanz, P. A. (1985) Untersuchungen an 5S ribosomalen Ribonukleinsäuren als Beitrag zur Klärung von Systematik
und Phylogenie der Basidiomyceten. Zeitschrift für Mykologie 51:
205–243.
Hibbett, D. S., Gilbert, L.-B. & Donoghue, M. J. (2000) Evolutionary
instability of ectomycorrhizal symbioses in basidiomycetes. Nature
407: 506–508.
Hibbett, D. S. & Thorn, R. G. (2001) Homobasidiomycetes. In The
Mycota. Vol. VII, Part B. Systematics and Evolution (D. J.
McLaughlin, E. G. McLaughlin & P. A. Lemke, eds): 121–168.
Springer-Verlag, Berlin.
Huelsenbeck, J. P., Larget, B., Miller, R. E. & Ronquist, F. (2002)
Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 51: 673–688.
Huelsenbeck, J. P. & Ronquist, F. R. (2001) MrBayes: Bayesian
inference of phylogenetic trees. Bioinformatics 17: 754–755.
Kimura, M. (1980) A simple method for estimating evolutionary rates
of base substitutions through comparative studies of nucleotide
sequences. Journal of Molecular Evolution 16: 111–120.
Kottke, I., Beiter, A., Weiß, M., Haug, I., Oberwinkler, F. &
Nebel, M. (2003) Heterobasidiomycetes form symbiotic associations with hepatics: Jungermanniales have sebacinoid mycobionts
Sebacinales, overlooked mycorrhizal heterobasidiomycetes
while Aneura pinguis (Metzgeriales) is associated with a Tulasnella
species. Mycological Research 107: 957–968.
Lowy, B. (1971) Tremellales. [Flora Neotropica No. 6.] Hafner, New
York.
McGuire, J. M. (1941) The species of Sebacina (Tremellales) of
temperate North America. Lloydia 4: 1–43.
McKendrick, S. L., Leake, J. R. & Read, D. J. (2000) Symbiotic
germination and development of myco-heterotrophic plants in
nature: transfer of carbon from ectomycorrhizal Salix repens and
Betula pendula to the orchid Corallorhiza trifida through shared
hyphal connections. New Phytologist 145: 539–548.
McKendrick, S. L., Leake, J. R., Taylor, D. L. & Read, D. J. (2002)
Symbiotic germination and development of the myco-heterotrophic orchid Neottia nidus-avis in nature and its requirement for
locally distributed Sebacina spp. New Phytologist 154 : 233–247.
Milligan, M. J. & Williams, P. G. (1987) Orchidaceous rhizoctonias
from roots of nonorchids : mycelial and cultural characteristics of
field and pot culture isolates. Canadian Journal of Botany 65:
598–606.
Oberwinkler, F. (1977) Das neue System der Basidiomyceten. In
Beiträge zur Biologie der niederen Pflanzen (W. Frey, H. Hurka &
F. Oberwinkler, eds): 59–104. Gustav Fischer Verlag, Stuttgart.
Rambaut, A. (1996) Se-Al. Sequence Alignment Editor. University of
Oxford, Oxford. http://evolve.zoo.ox.ac.uk/software.html
Rambaut, A. & Drummond, A. (2003) Tracer. MCMC Trace
Analysis Tool. University of Oxford, Oxford. http://evolve.zoo.ox.
ac.uk/software.html
Rasmussen, H. N. (2002) Recent developments in the study of orchid
mycorrhiza. Plant and Soil 244 : 149–163.
Roberts, P. (1993) Exidiopsis species from Devon, including the new
segregate genera Ceratosebacina, Endoperplexa, Microsebacina,
and Serendipita. Mycological Research 97: 467–478.
Saitou, N. & Nei, M. (1987) The neighbor-joining method: a new
method for reconstructing phylogenetic trees. Molecular Biology
and Evolution 4: 406–425.
Selosse, M.-A., Bauer, R. & Moyersoen, B. (2002) Basal hymenomycetes belonging to the Sebacinaceae are ectomycorrhizal on
temperate deciduous trees. New Phytologist 155: 183–195.
Selosse, M.-A., Faccio, A., Scappaticci, G. & Bonfante, P. (2004)
Chlorophyllous and achlorophyllous specimens of Epipactis
microphylla (Neottieae, Orchidaceae) are associated with ectomycorrhizal septomycetes, including truffles. Molecular Microbiology, in
press.
Selosse, M.-A., Weiß, M., Jany, J.-L. & Tillier, A. (2002) Communities and populations of sebacinoid basidiomycetes associated with
the achlorophyllous orchid Neottia nidus-avis (L.) L.C.M. Rich.
and neighbouring tree ectomycorrhizae. Molecular Ecology 11:
1831–1844.
Swann, E. C. & Taylor, J. W. (1993) Higher taxa of basidiomycetes:
an 18S rRNA gene perspective. Mycologia 85: 923–936.
Swann, E. C. & Taylor, J. W. (1995) Phylogenetic perspectives on
basidiomycete systematics: evidence from the 18S rRNA gene.
Canadian Journal of Botany 73: S862–S868.
Swofford, D. L. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sinauer Associates,
Sunderland, MA.
1010
Swofford, D. L., Olsen, G. J., Waddell, P. J. & Hillis, D. M. (1996)
Phylogenetic Inference. In Molecular Systematics (D. M. Hillis,
C. Moritz & B. K. Mable, eds): 407–514. Sinauer Associates,
Sunderland, MA.
Taylor, D. L. & Bruns, T. D. (1997) Independent, specialized invasions of ectomycorrhizal mutualism by two nonphotosynthetic
orchids. Proceedings of the National Academy of Science of the USA
94: 4510–4515.
Taylor, D. L., Bruns, T. D., Szaro, T. M. & Hodges, S. A. (2003)
Divergence in mycorrhizal specialization within Hexalectris spicata
(Orchidaceae), a nonphotosynthetic desert orchid. American
Journal of Botany 90 : 1168–1179.
Tedersoo, L., Hallenberg, N., Larsson, K.-H. & Kõljalg, U. (2003)
Fine scale distribution of ectomycorrhizal fungi and roots across
substrate layers including coarse woody debris in a mixed forest.
New Phytologist 159 : 153–165.
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. &
Higgins, D. G. (1997) The ClustalX windows interface: flexible
strategies for multiple sequence alignment aided by quality analysis
tools. Nucleic Acids Research 24: 4876–4882.
Tulasne, L. R. E. & Tulasne, C. (1871) New notes on the tremellineous fungi and their analogs. Journal of the Linnean Society of
London, Botany 13: 31–42.
Urban, A., Weiß, M. & Bauer, R. (2003) Ectomycorrhizae involving
sebacinoid mycobionts. Mycological Research 107: 3–14.
Varma, A., Singh, A., Sudha, Sahay, N. S., Sharma, J., Roy, A.,
Kumari, M., Rana, D., Thakran, S., Deka, D., Bharti, K., Hurek,
T., Blechert, O., Rexer, K.-H., Kost, G., Hahn, A., Maier, W.,
Walter, M., Strack, D. & Kranner, I. (2001) Piriformospora indica:
an axenically culturable mycorrhiza-like endosymbiotic fungus.
In Fungal Associations (B. Hock, ed.): 125–150. Springer-Verlag,
Berlin.
Verma, S., Varma, A., Rexer, K.-H., Hassel, A., Kost, G., Sarbhoy,
A., Bisen, P., Bütehorn, B. & Franken, P. (1998) Piriformospora
indica, gen. et sp. nov., a new root-colonizing fungus. Mycologia
90: 896–903.
Warcup, J. H. (1988) Mycorrhizal associations of isolates of Sebacina
vermifera. New Phytologist 110: 227–231.
Warcup, J. H. & Talbot, P. H. B. (1967) Perfect states of Rhizoctonias
associated with orchids. New Phytologist 66: 631–641.
Weiß, M., Bauer, R. & Begerow, D. (2004) Spotlights on heterobasidiomycetes. In Frontiers in Basidiomycote Mycology (R. Agerer,
M. Piepenbring & P. Blanz, eds): 7–48. IHW-Verlag, Eching.
Weiß, M. & Oberwinkler, F. (2001) Phylogenetic relationships in
Auriculariales and related groups – hypotheses derived from nuclear
ribosomal DNA sequences. Mycological Research 105: 403–415.
Wells, K. (1975) Studies of some Tremellaceae. V. A new genus,
Efibulobasidium. Mycologia 67: 147–156.
Wells, K. & Oberwinkler, F. (1982) Tremelloscypha gelatinosa, a
species of a new family Sebacinaceae. Mycologia 74 : 325–331.
Williams, P. G. (1985) Orchidaceous rhizoctonias in pot cultures
of vesicular-arbuscular mycorrhizal fungi. Canadian Journal of
Botany 63 : 1329–1333.
Corresponding Editor: D. L. Hawksworth