f u n g a l e c o l o g y 1 9 ( 2 0 1 6 ) 1 5 5 e1 6 8
available at www.sciencedirect.com
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journal homepage: www.elsevier.com/locate/funeco
Relationships between terrestrial and freshwater
lignicolous fungi
R. KODSUEBa,b,*, S. LUMYONGb, E.H.C. MCKENZIEc, A.H. BAHKALId,
K.D. HYDEe
a
Faculty of Science and Technology, Pibulsongkram Rajabhat University, Phitsanulok 65000, Thailand
Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
c
Landcare Research, Private Bag 92170, Auckland, New Zealand
d
Botany and Microbiology Department, King Saud University, College of Science, P.O. Box: 2455, Riyadh 1145,
Saudi Arabia
e
Center of Excellence in Fungal Research, Mae Fah Luang University, Tasud, Chiang Rai 57100, Thailand
b
article info
abstract
Article history:
This study investigated the communities of fungi on Magnolia liliifera wood in terrestrial
Received 16 May 2015
and freshwater habitats in northern Thailand. Freshly fallen samples of M. liliifera wood
Revision received 26 August 2015
were collected from the forest floor, oven dried, and then placed in the stream or adjacent
Accepted 27 August 2015
to the stream on the forest floor as baits. The samples were collected and examined after 3
Available online 21 October 2015
and 6 months of submersion and periodically over 29 months from the forest floor. Thirty-
Corresponding editor:
€ rlocher
Felix Ba
seven species of lignicolous fungi were discovered from 50 bait samples of wood sub-
Keywords:
baits). The fungal communities on wood in freshwater were distinct from those in the
Aquatic fungi
terrestrial habitat. Seventeen species of fungi overlapped between freshwater and terres-
Fungal succession
trial habitats, but only five out of 234 species overlapped between all habitats (freshwater,
Lignin
natural terrestrial and terrestrial bait). Corynespora cassiicola (60% frequency of occurrence)
merged in the stream. Fungi obtained from submerged baits were compared with those
found on wood of M. liliifera in terrestrial habitats (both naturally terrestrial and terrestrial
Degradation
was the most common taxon found on natural terrestrial samples, while Lasiodiplodia
Fungal communities
theobromae (43% frequency of occurrence) was the dominant species from terrestrial baits.
Candelabrum brocchiatum (26%) was the most common species from submerged baits. The
common genera of fungi obtained from submerged baits were similar to those reported in
other submerged wood studies.
ª 2015 Elsevier Ltd and The British Mycological Society. All rights reserved.
Introduction
Freshwater fungi are any species relying on freshwater for
some part of their life cycle, or any species colonizing substrata that are predominantly aquatic or semi-aquatic in
nature (Thomas, 1996; Wong et al. 1998). In other words, they
are fungi whose habitats may be clearly of an aquatic nature,
or that colonize submerged plant parts in freshwater environments (Wong et al. 1998). Freshwater fungi thus are a
ubiquitous and diverse group of organisms that colonize
substrata found in aquatic or semi-aquatic environments (Luo
et al., 2004; Fryar et al., 2005; Pascoal et al., 2005; Sakayaroj
* Corresponding author. Faculty of Science and Technology, Pibulsongkram Rajabhat University, Phitsanulok 65000, Thailand.
E-mail address: kodsueb@yahoo.com (R. Kodsueb).
http://dx.doi.org/10.1016/j.funeco.2015.09.005
1754-5048/ª 2015 Elsevier Ltd and The British Mycological Society. All rights reserved.
156
R. Kodsueb et al.
et al., 2005; Vijaykrishna and Hyde, 2006; Shearer et al., 2007;
Hyde et al. 2016). They are taxonomically diverse, and flourish
€ nczo
€ l and
in various ecological niches (Cai et al., 2003; Go
vay, 2003; 2004; Fryar et al., 2004a; b; Vijaykrishna and Hyde,
Re
2006; Shearer et al., 2007). According to the above definition,
some terrestrial fungi, which release spores that are dispersed
in water, are regarded as freshwater fungi (Luo et al., 2004).
Shearer (1993), however, mentioned that the presence of
spores in water alone may not be an appropriate definition.
Moreover, there are several species of fungi (e.g. Jahnula species) that only occur in freshwater habitats and only those can
be confidently classified as freshwater fungi (Wong et al.,
1998). Some ascomycetes categorized as freshwater fungi
have also been reported from other habitats e.g. terrestrial
and marine habitats. Freshwater ascomycetes can be divided
into four groups based on their occurrence: (1) genera that are
known only from freshwater habitats; (2) genera found in both
freshwater and terrestrial habitats; (3) genera from freshwater
and marine habitats; and (4) genera that are found in freshwater, marine and terrestrial habitats (Table 1, Vijaykrishna
and Hyde, 2006). Vijaykrishna and Hyde (2006) investigated
the origin of freshwater ascomycetes using molecular
sequence data, and showed that freshwater ascomycetes (and
marine fungi) originated from terrestrial fungi.
The freshwater fungi that grow on submerged wood are
known as lignicolous freshwater fungi (Hyde et al., 2016),
while those that grow on leaves are known as aquatic leafinhabiting hyphomycetes or Ingoldian fungi (Graça et al.,
2016). These fungi are generally studied by different methods
(Chan et al., 2000; Tsui et al., 2000), with woody lignicolous
samples being placed in moist chambers and leaves being
placed in aerated bubbles chambers (Graça et al., 2016). The
communities on wood and leaves therefore differ, although
the few studies where woody litter has been placed in bubble
€ nczo
€ l and Re
vay,
chambers have revealed Ingoldian fungi (Go
1993; Sridhar et al., 2010). Here we use moist chamber incubation so our study is confined to lignicolous freshwater fungi,
although we briefly discuss leaf-inhabiting fungi.
Conidial fungi with staurospores, the Ingoldian fungi, are
commonly reported from freshwater habitats (Descals and
€ nczo
€ l and Re
vay, 2006). Ando (1992) introMoralejo, 2001, Go
duced the term “terrestrial aquatic hyphomycetes” for the
fungi which possess staurospores found in terrestrial habitats
(e.g. litter, roots and soils). Some species in this group are
listed in Table 2.
Relationships between freshwater and terrestrial
lignicolous fungi
There is little information concerning the relationship
between freshwater and terrestrial lignicolous fungi. Cai et al.
(2006b) studied the fungal communities on bamboo in a
freshwater stream and in the riparian region, and found that
different fungal communities occur in each habitat, with low
overlap of species, and differing dominant species. In Thailand, the relationship between freshwater fungi and terrestrial fungi on palms has been investigated by comparing the
occurrence of fungi on the same substratum in different
habitats (e.g. Pinnoi et al., 2006; Pinruan et al., 2007; Boonyuen
et al., 2014). Pinnoi et al. (2006) studied fungal diversity on
different parts of the palm, Eleidoxa conferta, including those
from terrestrial (dry and damp materials) and submerged
habitats. Boonyuen et al. (2014) showed partial overlap in
species between the two habitats with submerged samples
yielding the most fungal records. Similar work has been
reported by Pinruan et al. (2007), who studied the fungal
diversity on another palm, Licuala longicalycata. However, they
found that the dry material supported most fungal diversity.
Boonyuen et al. (2014) showed that wood-inhabiting fungi are
diverse, however, they differ between studies depending on
tree species, geography and the exposure period. They mentioned that freshwater fungi are slow to cause wood decay
since they are soft rotters, as compared to white rotters and
brown rotters that predominate in wood decay in terrestrial
environments (Yuen et al., 2000).
Woody litter may fall into streams and rivers. It is not clear
whether the fungi decaying terrestrial forest wood continue to
thrive when submerged in water. In this study, we investigated fungi on Magnolia liliifera wood from freshwater and
terrestrial habitats to see if they are the same or different. This
study examined whether fungi on decaying wood on the forest floor are also present on wood submerged in water.
Materials and methods
Study sites
This study was undertaken in an evergreen forest nearby the
Medicinal Plant Garden in Doi Suthep-Pui National Park,
Table 1 e Common freshwater ascomycete genera with terrestrial, marine/terrestrial or no counterparts (from
Vijaykrishna and Hyde, 2006).
Freshwater only
Freshwater/Terrestrial
Freshwater/Marine
Freshwater/Marine/Terrestrial
Aquaticola
Cataractispora
Jahnula
Mamillisphaeria
Pseudoproboscispora
Rivulicola
Torrentispora
Annulatascus
Ascotaiwania
Byssosphaeria
Cercophora
Kirschsteiniothelia
Ophioceras
Pseudohalonectria
Aniptodera
Halosarpheia
Nais
Quintaria
Savoryella
Anthostomella
Didymella
Lophiostoma
Massarina
Phomatospora
Saccardoella
Vibrissea
Terrestrial and freshwater lignicolous fungi
157
Table 2 e Staurosporous aquatic hyphomycetes reported from fallen leaves, fallen twigs and litter (modified
from Ando, 1992).
Species
Alatosessilispora bibrachiata
Alatospora acuminata
Alatospora pulchella
Anguillospora crassa
Anguillospora longissima
Anguillospora rosea
Arborispora dolichovirga
Arborispora palma
Articulospora foliicola
Articulospora tetracladia
Calcarispora hiemalis
Ceratosporium cornutum
Ceratosporium verrucosum
Clavariopsis aquatica
Clavatospora longibranchiaga
Colispora elongata
Crucella subtilis
Culicidospora aquatica
Culicidospora gravida
Curicispora ombrogena
Dacryoscyphus chrysochilus
Dendrospora erecta
Dendrospora fastuosa
Dendrospora fusca
Dendrospora nana
Dendrospora tenella
Dicranidion fissile
Digitodochium rhodoleucum
Diplocladiella alta
Dwayaangam colodena
Dwayaangam cornuta
Dwayaangam yakuensis
Flagellospora curvula
Flagellospora fusarioides
Fontanospora fusiramosa
Gemmulina botryosa
Geniculosora inflata
Gyoerffyella biappendiculata
Gyoerffyella gemellipara
Gyoerffyella rotula
Heliscella stellata
Heliscina campanulata
Heliscus lugdunensis
Ingoldiella hamata
Isthmotricladia britannica
Isthmotricladia rotundata
Lateriramulosa ainflata
Lateriramulosa minitriangularia
Lemoniera aquatica
Lemoniera filiformis
Lemoniera terrestris
Lunulospora curvula
Margaritispora aquatica
Microstella pluvioriens
Mycocentrospora acerina
Ordus tribrachiatus
Pleuropedium multiseptatum
Pleuropedium tricladioides
Porocladium aquaticum
Retiarius bovicornutus
Speiropsis pedatospora
References
Ando (1992)
€ nzo
€ l and Re
vay (1983), Sokolski et al. (2006)
Go
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Ando (1992)
Matsushima (1975)
€ nczo
€ l and Re
vay (1983), Sokolski et al. (2006)
Go
Sokolski et al. (2006)
Ando (1992)
Kirschner and Chen (2004)
€ nczo
€ l and Re
vay (1983), Sokolski et al. (2006)
Go
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Ando (1992)
Kirschner and Yang (2005)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Ando (1992)
Tubaki and Kubono (1989)
Kirschner and Chen (2004)
Sokolski et al. (2006)
Sokolski et al. (2006)
Ando (1992)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Kodsueb (2007)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Kodsueb (2007)
Sokolski et al. (2006)
Matsushima (1983)
Matsushima (1975)
Sokolski et al. (2006)
€ nczo
€ l and Re
vay (1983), Sokolski et al. (2006)
Tubaki (1958), Go
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Ando (1992)
Sokolski et al. (2006)
Ando (1992)
Sokolski et al. (2006)
Sokolski et al. (2006)
Sokolski et al. (2006)
Ando (1992)
Kodsueb (2007)
(continued on next page)
158
R. Kodsueb et al.
Table 2 e (continued )
Species
Speiropsis rogergoosensis
Taeniospora descalsii
Taeniospora gracilis
Tetrachaetum elegans
Tetracladium furcatum
Tetracladium setigerum
Tetraploa aristata
Titaea clakeae
Titaeella capnophila
Tricellula taiwanensis
Tricladiella pluvialis
Tricladium angulatum
Tricladium splendens
Tridentaria sp.
Trifurcospora irregularis
Trinacrium subtile
Tripospermum acerinum
Tripospermum infalcata
Tripospermum myrti
Triscelophorus monosporus
Trisulcosporium acerinum
Varicosporium elodeae
Varicosporium giganteum
Volucrispora ornithomorpha
Chiang Mai Province, northern Thailand. The sampling site for
the submerged succession experiment was located in the
same area as for the terrestrial experiment. The stream was
30 cm to 1 m wide, 15 cm to 45 cm deep and passed through
secondary forest. Unpolluted water flowed throughout the
year, with flooding during the rainy season. The stream
comprised a stony, sandy and gravel bottom.
Sample collection and examination
One hundred and ten dead branches of Magnolia liliifera (ca
30 cm long, 1e2.5 cm diameter) that had fallen to the ground
under M. liliifera trees were collected and oven-dried at 70 C
for 1 week and used for the submersion and terrestrial
succession study. The submerged wood bait samples were
tied separately with nylon thread and submerged in the
study stream at Doi Suthep-Pui on 18 November 2002.
Twenty-five wood baits were randomly collected from the
stream at each sampling time along the stream of the study
site. It was planned to collect samples at 3, 6, 9 and 12
months. However, in the rainy season, most of the baits
were washed away by very strong flooding, while other baits
were buried in silt and sand. Therefore, baits were collected
only twice e 17 February 2003 (month 3; 25 samples) and 20
May 2003 (month 6; 25 samples). Sixty samples (ca 30 cm
long, 1e2.5 cm diameter) of naturally decaying M. liliifera,
that had fallen to the ground under the trees, were also
collected from areas alongside the stream for general fungal
diversity assessment. For terrestrial succession studies,
two-hundred living samples (ca 30 cm long, 1e2.5 cm
diameter, with bark) were cut and collected from living
trees. Samples were oven-dried at 70 C for 1 week and tied
References
Keshava Prasad and Bhat (2002)
Sokolski et al. (2006)
Sokolski et al. (2006)
€ nczo
€ l and Re
vay (1983), Sokolski
Go
Sokolski et al. (2006)
€ nczo
€ l and Re
vay (1983), Sokolski
Go
Ando (1992)
Ando (1992)
Ando (1992)
Sokolski et al. (2006)
Ando (1992)
€ nczo
€ l and Re
vay (1983), Sokolski
Go
Sokolski et al. (2006)
Ando (1992)
Ando (1992)
Ando (1992)
Ando (1992)
Ando (1992)
Sokolski et al. (2006)
Sokolski et al. (2006)
Ando (1992)
€ nczo
€ l and Re
vay (1983), Sokolski
Go
Sokolski et al. (2006)
€ nczo
€ l and Re
vay (1983)
Go
et al. (2006)
et al. (2006)
et al. (2006)
et al. (2006)
with labelled plastic tags. Dried samples (terrestrial baits)
were then placed on the ground under M. liliifera trees on 9
July 2002. Ten baits were randomly collected from the field
at each sampling time (15d, 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21,
23, 29 months, Kodsueb et al. 2008a, b). Fungi on these
samples for each experiment were examined and identified
following 1 week of incubation and periodically examined
for up to 1 month. The fungi were identified and recorded.
Herbarium material is maintained at CMU (Chiang Mai
University). Fungi were identified by morphological characters using relevant texts and references (e.g. Ellis, 1971,
1976; Carmichael et al., 1980; Sutton, 1980; Sivanesan, 1984;
€ hlich and Hyde, 2000; Hyde et al., 2000; Lu and Hyde,
Fro
2000; Grgurinovic, 2003; Taylor and Hyde, 2003; Tsui and
Hyde, 2003; Wang et al., 2004; Wu and Zhuang, 2005; Cai
et al., 2006a).
Statistical analyses
A 3-dimensional correspondence analysis (Anonymous, 1995)
was performed to examine the differences in fungal communities on M. liliifera in freshwater and terrestrial habitats.
The results are presented in terms of percentage occurrence
of fungi (Table 3), where taxa with a percentage occurrence
higher than ten are regarded as dominant species. Shannon
indices (H’) were used to express species diversity of a
community (Shannon and Weaver, 1949), and species area
curves were used to determine the adequacy of the sample
size (10 samples as the least number). Similarity of fungal
communities (Magurran, 2004; Diserud and Ødegaard, 2007)
was calculated from PC-ORD version 4.0 (McCune and Mefford, 1999).
Terrestrial and freshwater lignicolous fungi
159
Table 3 e Percentage occurrence of fungi found on submerged Magnolia liliifera wood baits.
Taxa
Candelabrum brocchiatum
Berkleasmium minutissimum
Ellisembia opaca
Aquaticola hyalomura
Phaeoisaria clematidis
Sporoschisma uniseptatum
Acanthophyses-like structure
Annulatascus velatisporus
Helicosporium lumbricoides
Nectria haematococca
Ophioceras arcuatisporum
Aquaphila albicans
Dactylaria lignicola
Hyphomycete 2
Nais inornata
Nodulisporium sp.
Savoryella lignicola
Trichoderma sp.
Verticillium sp. 4
Acremonium sp.
Acrogenospora sphaerocephala
Unitunicate ascomycete sp. 5
Coelomycete sp. 4
Coelomycete sp. 5
Cylindrocladium sp.
Dactylaria hyalina
Dactylella sp. 3
Didymosphaeria sp.
Lasiodiplodia theobromae
Gonytrichum chlamydosporium var. simile
Hyphomycete sp. 3
Hypoxylon kretzschmarioides
Lasiosphaeria immersa
Nectria sp.
Ophiochaeta lignicola
Pleurothecium recurvatum
Pseudoproboscispora aquataca
Percentage occurrence
Overall percentage occurrence
3 months submerged
6 months submerged
4
12
28
8
12
4
48
28
4
12
4
12
12
12
12
12
12
8
8
4
4
8
8
4
8
4
8
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
Fig 1 e Species Accumulation curve.
26
20
16
10
8
8
6
6
6
6
6
4
4
4
4
4
4
4
4
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
160
R. Kodsueb et al.
Table 4 e A comparison of overlapping taxa recovered on Magnolia liliifera wood from different habitats.
Taxa
Habitats
Naturally occurring
Acanthophyses-like structure
Acanthostigma minutum
Acremonium sp.
Acrodictys deightonii
Acrodictys globulosa
Acrodictys sp.
Acrogenospora sphaerocephala
Amphisphaeria sp.
Annulatascus velatisporus
Anthostomella cf. limitata
Anthostomella ludoviciana
Anthostomella sp.
Aquaphila albicans
Aquaticola ellipsoidae
Aquaticola hyalomura
Arthrobotrys sp.
Ascotaiwania wulai
Bactrodesmium longispora
Bactrodesmium ramosium
Basidiomycete sp. 1
Basidiomycete sp. 2
Berkleasmium concinnum
Berkleasmium minutissimum
Bionectria sp.
Bisporella sp.
Bisporomyces lignicola
Bitunicate ascomycete sp. 1
Bitunicate ascomycete sp. 2
Bitunicate ascomycete sp. 3
Boerlagiomyces grandisporus
Brachydesmiella caudata
Canalisporium caribense
Canalisporium cf. caribense
Canalisporium exiguum
Canalisporium pallidum
Canalisporium sp.
Canalisporium sp. nov.?
Candelabrum brocchiatum
Candelabrum sp.
Catenularia malabarica
Cercophora arenicola
Cercophora sp.
Cercospora sp.
Cercosporella sp.
Chaetomium globosum
Chaetopsina fulva
Chaetosphaeria sp.
Chalara hyalina
Cheiromyces sp.
Chloridium botryoideum
Chloridium lignicola
Chloridium sp.
Chloridium viride
Clonostachys cylindrospora
Codinaea sp.
Coelomycete sp. 1
Coelomycete sp. 2
Coelomycete sp. 3
Coelomycete sp. 4
Coelomycete sp. 5
Coprinus sp.
Cordana sp.
Corynespora cassiicola
þ
þ
þ
þ
þ
Submerged baits
Terrestrial baits
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
Terrestrial and freshwater lignicolous fungi
161
Table 4 e (continued )
Taxa
Habitats
Naturally occurring
Cryptophiale udagawae
Cryptophialoidea unilateralis
Cylindrocarpon candidum
Cylindrocladium sp.
Dactylaria biseptatum
Dactylaria cf. lakebarrinensis
Dactylaria hyalina
Dactylaria irregularis
Dactylaria lignicola
Dactylaria longidentata
Dactylaria sp. 1
Dactylaria sp. 2
Dactylaria sp. 3
Dactylella sp. 1
Dactylella sp. 2
Dactylella sp. 3
Daldinia concentrica
Diaporthe sp. 1
Diaporthe sp. 2
Diaporthe sp. 3
Diatrypella quercina
Dictyochaeta australiensis
Dictyochaeta simplex
Dictyochaeta sp.
Dictyochaeta uliginicola
Dictyosporium digitatum
Dictyosporium subramanianii
Didymosphaeria sp.
Dischloridium regenerans
Dischloridium sp.
Discomycete sp.
Discomycetoidea aequatorialis
Dokmaia monthadangii
Dothidotthia sp.
Ellisembia adscendens
Ellisembia brachyphus
Ellisembia opaca
Ellisembia sp. 1
Ellisembia sp. 2
Eutypa sp.
Exosporium ampullaceum
Fusarium sp. 1
Fusarium sp. 2
Gliocladium sp.
Gonytrichum chlamydosporium var. simile
Gonytrichum macrocladum
Gonytrichum sp.
Guignardia sp.
Halotthia posidoniae
Harpographium sp.
Helicoma viridis
Helicomyces bellus
Helicomyces macrofilamentosus
Helicomyces roseus
Helicomyces sp.
Helicosporium pallidum
Helicosporium aureum
Helicosporium lumbricoides
Helicosporium vegetum
Helicosporium velutinum
Henicospora longissima
Henicospora sp.
Submerged baits
þ
þ
þ
þ
Terrestrial baits
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
þ
(continued on next page)
162
R. Kodsueb et al.
Table 4 e (continued )
Taxa
Habitats
Naturally occurring
Hilberina caudata
Hyalosynnema magnoliae sp. nov.
Hyphomycete sp. 1
Hyphomycete sp. 2
Hyphomycete sp. 3
Hypoxylon fragiforme
Hypoxylon kretzschmarioides
Idriella mycoyonoidea
Keissleriella fusispora
Kiessleria sp.
Kirschsteiniothelia thujina
Lachnum sp.
Lachnum virgineum
Lasiodiplodia theobromae
Lasiosphaeria immersa
Massarina cf. walkerii
Massarina sp.
Melanocephala australiensis
Melanocephala cupulifera
Melanocephala sp.
Melanochaeta hemipsila
Mirandina dactylelloides
Monacrosporium sp.
Monodictys peruviana
Monodictys sp.
Mycosphaerella sp.
Nais inornata
Nakataea serpens
Nakataea sp.
Nectria aureo-fulva
Nectria coccinea
Nectria galligena
Nectria haematococca
Nectria sp. 1
Nectria sp. 2
Nectriella cf. microspora
Nectriopsis sp.
Neta compacta
Neta sp.
Nodulisporium sp.
Ophioceras arcuatisporum
Ophioceras sp.
Ophiochaeta lignicola
Orbilia xanthostigma
Paecilomyces sp.
Penicillium sp.
Periconiella sp. 1
Periconiella sp. 2
Phaeoisaria clematidis
Phaeosphaeria cf. canadensis
Phaeosphaeria sp. 1
Phaeosphaeria sp. 2
Phaeostalagmus altissimus
Phoma sp.
Phomopsis sp.
Pleurocatena acicularis
Pleurophragmium sp.
Pleurothecium recurvatum
Pseudobotrytis terrestris
Pseudoproboscispora aquataca
Ramichloridium fasciculatum
Ramichloridium lignicola
Ramichloridium sp.
Rhinocladiella cf. intermedia
Submerged baits
Terrestrial baits
þ
þ
þ
þ
þ
þ
þ
þ
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þ
þ
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þ
þ
þ
Terrestrial and freshwater lignicolous fungi
163
Table 4 e (continued )
Taxa
Habitats
Naturally occurring
Rhinocladiella mansonii
Saccardoella sp.
Savoryella lignicola
Scolecobasidium sp.
Spadicoides magnoliae sp. nov.
Sporidesmium sp. 1
Sporidesmium sp. 2
Sporidesmium sp. 3
Sporoschisma saccardoi
Sporoschisma uniseptatum
Sporothrix sp.
Stachybotrys chlorohalonata
Stibella sp.
Stilbella aciculosa
Stilbohypoxylon quisquiliarum
Tapesia fusca
Torula herbarum
Trichoderma cf. viride
Trichoderma lignorum
Trichoderma sp.
Tubeufia cylindrothecia
Tubeufia paludosa
Unitunicate ascomycete sp. 1
Unitunicate ascomycete sp. 2
Unitunicate ascomycete sp. 3
Unitunicate ascomycete sp. 4
Unitunicate ascomycete sp. 5
Veronaea botryosa
Verticillium sp. 1
Verticillium sp. 2
Verticillium sp. 3
Verticillium sp. 4
Verticillium tenerum
Volutella ramkumarii
Xylaria carpophila
Xylaria filiformis
Xylaria hypoxylon
Xylaria longipes
Xylaria magnoliae
Xylaria polymorpha
Xylaria sp. 1
Xylaria sp. 2
Xylaria sp. 3
Xylaria sp. 4
Xylomyces aquaticus
Submerged baits
Terrestrial baits
þ
þ
þ
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þ
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þ
þ
þ
*Note: Bold indicates overlapping species from all habitats.
Results
Determination of adequacy of sampling size
Species area curves for each collection of M. liliifera almost
reached an asymptote because the slopes of the curves
declined with the increase of sample size. At about 10 samples, the slopes were close to zero (Fig 1). Although the curve
did not completely level off, the number of samples was large
enough to obtain a highly representative result.
Fungal diversity on submerged wood baits, and naturally
occurring terrestrial and terrestrial bait samples of
Magnolia liliifera
Two hundred and thirty four taxa were identified from 250
wood samples from terrestrial wood, terrestrial baits and
freshwater baits. Naturally occurring samples (terrestrial)
yielded the greatest diversity (species richness and number of
fungi per sample) with 83 taxa from 60 wood samples. This was
followed by terrestrial baits (yielding 163 taxa from 140 wood
samples) and submerged baits (37 taxa from 50 wood samples).
164
R. Kodsueb et al.
Table 5 e Number of overlapping taxa on woody litter of
Magnolia liliifera from three habitats (number in brackets
is the similarity index).
Terrestrial naturally
occurring
Submerged Baits
Submerged baits
Terrestrial baits
8 (0.13)
32 (0.26)
-
14 (0.14)
*Overlapping between all habitats ¼ five species (similarity
index ¼ 0.17)
Thirty-seven taxa were identified from 50 submerged M.
liliifera wood baits (Table 3). The most common taxa were
Candelabrum brocchiatum (on 26% of wood samples), Berkleasmium minutissimum (20%), Sporidesmium sp. (16%), Aquaticola
hyalomura (10%) and Sporoschisma uniseptatum (8%). Only 14
fungal taxa were obtained from samples submerged for 3
months, while 31 taxa were obtained from samples submerged for 6 months (Table 3). Eighteen species (49% of total
species) were represented by only one record and can be
regarded as rare. Five taxa were unidentified including one
ascomycete, two coelomycetes and two hyphomycetes since
there was not enough material and some were immature.
The list of overlapping fungi obtained from the three habitats is shown in Table 4, with only five taxa overlapping
between all habitats. Of the 214 taxa recorded from terrestrial
samples (baits and natural occurrence), only six (2.8% of all
terrestrial taxa) were overlapping at 3 months and 17 (7.9% of
all terrestrial taxa) overlapping at 6 months (Table 5).
Fungal communities on Magnolia liliifera wood from
different habitats
3D-correspondence analysis of fungi on wood of M. liliifera
from different habitats (terrestrial naturally occurring, terrestrial baits and submerged baits) showed three fungal
communities; naturally occurring terrestrial; MLN, submerged
baits; MLS and terrestrial baits; MLT (Fig 2). The percentages of
abundance for each fungal taxon obtained from submerged
baits are listed in Table 3, and those from naturally occurring
and terrestrial baits in Kodsueb et al. (2008a; b). Dominant
species from the three habitats, species richness, species
evenness, number of fungi per sample, Shannon diversity
index (H) and Simpson diversity index (D) of each habitat are
shown in Table 6.
distribution arrangement of fungal community based on the
frequencies of occurrence of fungal taxa in each sample types,
corroborated the existence of two distinct habitats supporting
distinct fungal communities (Fig 2). Eight taxa overlapped on
naturally occurring terrestrial and submerged baited samples
(similarity index ¼ 0.13). There were 14 overlapping taxa on
submerged baits and terrestrial baits and 32 overlapping taxa
on naturally occurring terrestrial samples and terrestrial baits
(similarity index of 0.14 and 0.26, respectively).
Discussion
Species composition and species abundance
This is the first study investigating the differences in fungal
communities on Magnolia wood in a freshwater stream as
compared to the same wood in the adjacent riparian terrestrial habitat in a tropical rainforest. The dominant fungi on
naturally occurring terrestrial samples were similar to those
from terrestrial baits, but significantly different from those on
submerged baits (Table 6). The dominant fungi in the present
study also differed from those usually found to be common on
terrestrial wood (Huhndorf and Lodge, 1997; Crites and Dale,
1998; Allen et al., 2000).
Asexual fungi were the dominant group on wood in all
habitats. Basidiomycetes were present only on terrestrial
samples, with very low species numbers; they were absent in
the freshwater habitat. This is consistent with previous
studies where basidiomycetes were rare or absent on submerged wood (Wong et al., 1998; Shearer et al., 2007; Hyde
et al., 2016). The most common species on freshwater baits
was Candelabrum brocchiatum. Corynespora cassiicola was dominant on natural terrestrial wood and Lasiodiplodia theobromae
was dominant on terrestrial baits. The most common taxa on
Magnolia liliifera from freshwater baits overlapped with those
Comparison between fungal communities on terrestrial
woody litter and submerged woody litter
3D-correspondence analysis (Fig 2) showed that the fungal
communities on naturally occurring terrestrial M. liliifera
wood (MLN) and terrestrial baited wood (MLT) are more similar to each other than to those on submerged wood baits
(MLS) (see similarity index in Table 5). The fungal communities inhabiting terrestrial samples revealed higher similarities
considering species richness and fungal taxa composition
than those in the submerged habitat. The 3D correspondence
analysis, which provided an integrated overview of
Fig 2 e 3D-correspondence analysis of fungal succession
on woody litter of Magnolia liliifera (MLN [ naturally
occurring terrestrial samples, MLS [ submerged baits,
MLT [ terrestrial baits).
Terrestrial and freshwater lignicolous fungi
165
Table 6 e Diversity indices of saprotrophic fungi recovered from Magnolia liliifera wood.
Naturally terrestrial
Number of samples examined
Average number of fungi
per wood sample
Species richness
Species evenness
Shannon indices
Simpson indices
Dominant species
(percentage occurrence)
Submerged baits
Terrestrial baits (MLT)
60
1.4
50
0.7
140
1.2
83
0.890
3.923
0.9640
Corynespora cassiicola (60)
Phaeoisaria clematidis (20)
Anthostomella ludoviciana (16.7)
Canalisporium caribense (16.7)
Diaporthe sp. 2 (16.7)
Brachydesmiella cauata (13.3)
Massarina sp. (13.3)
Sporidesmium sp. 1 (13.3)
Ellisembia brachyphus (11.7)
Phomopsis sp. (11.7)
37
0.899
3.245
0.9439
Candelabrum brocchiatum (26)
Berkleasmium minutissimum (20)
Ellisembia opaca (16)
Aquaticola hyalomura (10)
Phaeoisaria clematidis (8)
Sporoschisma uniseptatum (8)
Acanthophyses-like structure(6)
Annulatascus velatisporus(6)
Helicosporium lumbricoides(6)
Nectria haematococca(6)
Ophioceras arcuatisporum(6)
163
0.834
4.248
0.9731
Lasiodiplodia theobromae (42.9)
Nectria coccinea (37.1)
Xylaria carpophila (23.6)
Canalisporium pallidum (17.1)
Dactylaria hyaline (17.1)
Chloridium viride (15.7)
Phaeostalagmus rossicus (15)
Gonytrichum macrocladum (14.3)
Dactylaria biseptata (13.6)
Boerlagiomyces grandisporus (11.4)
Coprinus sp. (11.4)
on other unidentified naturally occurring wood submerged in
the same stream (Kodsueb, pers. obs.), where Acanthophyseslike structure, Annulatascus velatispora, Helicosporium lumbricoides, Ophioceras arcuatisporum and Sporoschisma uniseptatum were the most common species.
brocchiatum, Savoryella lignicola and Sporoschisma uniseptatum
(Hyde and Goh, 1998; Tsui et al., 2000; Ho et al., 2002; Fryar
et al., 2004a, b; Tsui and Hyde, 2004). Nais inornata and Nectria
haematococca were found both here and in temperate freshwater (Shearer and von Bodman, 1983; Shearer and ZareMaivan, 1988).
Are the fungi on terrestrial Magnolia liliifera wood different
to those on submerged wood samples?
Habitat recurrence of fungi on Magnolia liliifera
Fungal successions and general diversity studies of fungal
communities on decomposing wood have been performed
worldwide in freshwater ecosystems (Goh and Hyde, 1996; Ho
et al., 2001, 2002; Tsui et al., 2000, 2001a, b; 2002; 2003; Sivichai
et al., 2000, 2002; Maria and Sridhar, 2004). There were some
overlapping species in M. liliifera wood baits compared to fungi
living on other wood in freshwater ecosystems in previous
studies, including Annulatascus velatispora, Aquaphila albicans,
Aquaticola hyalomura, Candelabrum brocchiatum, Helicosporium
lumbricoides, Ophioceras arcuatisporum, Nais inornata, Pseudoproboscispora aquataca, Savoryella lignicola and Sporoschisma
uniseptatum (Ho et al., 2001; 2002; Tsui et al., 2000; 2001a, b;
2002; 2003; Sivichai et al., 2000; 2002). Berkleasmium minutissimum, the dominant fungus on submerged baits of M. liliifera
has not been recorded as dominant in other studies. Conversely, some common genera obtained from submerged
wood worldwide e.g. Halosarpheia, Jahnula and Lophiostoma,
were not found in the present study. A possible explanation
for this may be the short time that the bait samples were
submersed compared with the naturally occurring samples or
the wood type.
Several studies have shown that different fungal communities occur in temperate and tropical freshwater habitats
(Goh and Hyde, 1996; Wong et al., 1998; Ho et al., 2001; Kane
et al., 2002; Tsui and Hyde, 2003; Tsui et al., 2003; Shearer et al.,
2007). The taxa obtained in this study are similar to those of
other tropical areas and less similar to those of temperate
regions. Species which overlap with those of other tropical
studies include Annulatascus velatispora, Candelabrum
Fungal species found on Magnolia liliifera varied between
habitats. From a total of 1,074 collections (234 taxa), 20 taxa
were unique to the freshwater samples and 197 taxa were
unique to the terrestrial samples, with only 17 overlapping
species. Some fungi collected from submerged wood are typical freshwater fungi (e.g. Annulatascus velatispora, Aquaticola
hyalomura, Ophioceras arcuatisporum, Nais inornata, Pseudoproboscispora aquataca, Savoryella lignicola and Sporoschisma uniseptatum), which are believed to have adaptation mechanisms
for living in freshwater habitats (Hyde and Goh, 2003; Cai et al.,
2006b). On the other hand, typical terrestrial fungi such as
Hypoxylon sp., Guignardia sp., Massarina cf. eburnea and Didymosphaeria sp. were recorded from terrestrial wood. However,
Lasiodiplodia theobromae, which has previously been assumed
to be unique to the terrestrial environment, was recorded
twice from submerged wood. Similarly, species of Nectria,
which are common terrestrial fungi on wood, bark and other
fungi (Samuels, 1976) and believed not to grow well in aquatic
habitats (Fryar et al., 2004b), were found on submerged wood
in the present study and in some previous studies (Willoughby
and Archer, 1973; Shearer and von Bodman, 1983; Ho et al.,
2002). In previous studies, some species of terrestrial fungi
that were present on wood before submergence, survived and
were found again after submergence (Shearer and Webster,
1991; Fryar et al., 2004b). It is not clear whether these fungi are
habitat exclusive and continue to thrive in a freshwater
environment. It is unlikely that the fungi on submerged wood
in the present study originated from the wood prior to submersion, since it had been oven-dried before submergence,
166
though some resistant spores may have survived. Fryar et al.
(2004b) believed that differences in fungal assemblages at the
beginning and after 3 months submergence might be attributed to a difference in substratum rather than the assemblage
of fungi already present in the sample.
The similarity of fungi in the present study in terrestrial
(naturally occurring and baited samples) and freshwater
habitats (submerged baits) was low (17 overlapping species),
suggesting that most fungi growing on terrestrial wood do not
thrive in freshwater habitats, concurring with previous studies (Fryar et al., 2004b; Cai et al., 2006b; Pinnoi et al., 2006;
Pinruan et al., 2007).
Why do submerged samples support lower fungal diversity?
The present finding of less diversity on submerged wood
concurs with that of Pinruan et al. (2007). Generally, longer
freshwater studies with prolonged sampling, yield greater
fungal diversity (Shearer and Crane, 1986; Ho et al., 2001; Tsui
et al., 2001b, 2003b). Compared to other freshwater studies,
fewer samples were examined in the present study and the
submergence period was shorter (Ho et al., 2002; Sivichai et al.,
2002), which may partly explain why more species were
obtained from terrestrial samples of M. liliifera than from the
freshwater samples. However, only between 25 and 80 taxa
were found on submerged wood in streams in 21 studies in the
tropics and subtropics (Ho et al., 2001; Cai et al., 2003; Fryar
et al., 2004b), indicating terrestrial fungi are much more
diverse. Another reason for the low numbers of fungi on
submerged samples is that few taxa are adapted for a submerged existence in freshwater ecosystems. These adaptations have been discussed in Hyde et al. (2016).
Acknowledgements
Kevin D. Hyde thanks the Chinese Academy of Sciences,
project number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming
Institute of Botany. The authors extend their sincere appreciations to the Deanship of Scientific Research at King Saud
University for its funding this Prolific Research group (PRG1436-09).
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