mycological research 110 (2006) 1271–1289
available at www.sciencedirect.com
journal homepage: www.elsevier.com/locate/mycres
Molecular phylogeny of Coniochaetales
Dania GARCÍAa,b, Alberto M. STCHIGELb, José CANOb, Misericordia CALDUCHb,
David L. HAWKSWORTHc, Josep GUARROb,*
a
Instituto de Investigaciones Fundamentales en Agricultura Tropical ‘‘Alejandro de Humboldt’’, calle 1 esq.2, Santiago de las Vegas,
Boyeros, C. de La Habana, Cuba
b
Facultat de Medicina i Ciències de la Salut, Universitat Rovira i Virgili, C/Sant Llorenç 21, E-43201, Reus, Tarragona, Spain
c
MycoNova, The Yellow House, Calle Aguila 12, Colonia La Maliciosa, Mataelpino, E-28492, Madrid, Spain
article info
abstract
Article history:
Although the taxonomy of ascomycetes has changed dramatically, generic delimitation
Received 23 December 2005
within the recently proposed order Coniochaetales has not been resolved. In order to clarify
Received in revised form
the phylogenetic relationships of genera in the Coniochaetaceae, we performed a molecular
1 June 2006
study based on the analyses of the sequences of the partial SSU and of the variable domains
Accepted 7 July 2006
of the LSU rDNA genes. The phylogenetic trees obtained do not support the monophyly of
Published on line 31 October 2006
the genera Coniochaeta, Coniochaetidium, Ephemeroascus, and Poroconiochaeta. A morphological
Corresponding Editor:
study confirmed that there were not enough differences to distinguish these genera, and the
H. Thorsten Lumbsch
latter three are treated as synonyms of Coniochaeta. The phialidic anamorph proved to be an
informative phylogenetic character in Coniochaetales, while that the type of ascomata (cleis-
Keywords:
tothecial or perithecial) and the ornamentation of the ascospore walls were of little taxo-
Ascomycota
nomic value at the generic level. The circumscription of the genus Coniochaeta is revised.
Coniocessia
The genera Coniocessia and Coniolariella are proposed as new within the order Xylariales to
Coniochaeta
accommodate Coniochaeta nodulisporioides, and C. gamsii, respectively. The taxonomic posi-
Coniolariella
tion of Synaptospora and Wallrothiella subiculosa are also discussed.
Xylariales
ª 2006 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
Introduction
The family Coniochaetaceae was erected by Malloch & Cain (1971)
to accommodate Coniochaeta and Coniochaetidium. The most distinctive morphological features of this family are the presence
of germ-slits in the ascospores, which differentiate these fungi
from Sordariaceae, and its phialidic anamorphs, which belongs
to Lecythophora (Barr 1990; Weber 2002). Xylariaceae is a close
family, generally, with stromatic ascomata and holoblastic
conidiogenesis, which are absent in Coniochaetaceae.
Coniochaetaceae has been traditionally included in Sordariales (Checa et al. 1988; Barr 1990; Lee & Hanlin 1999; Kirk
et al. 2001; Eriksson 2005), but this has not been universally accepted (Weber et al. 2002) and the new order Coniochaetales has
been recently proposed based on this family (Huhndorf et al.
2004). Coniochaetaceae, apart from the two mentioned genera,
currently encompasses also Barrina, Coniolaria (not validly
published; Eriksson & Hawksworth 1998), Ephemeroascus, Poroconiochaeta, and Synaptospora (Eriksson et al. 2004; Huhndorf
et al. 2004). The genus Ascotrichella is a morphologically similar
genus, characterized by non-stromatic ascomata, non-amyloid asci, ascospores with a germ-slit, and a Humicola-like anamorph; however, it has been considered to be a member of
Xylariaceae (Valldosera & Guarro 1988; Whalley 1996).
The genera of the Coniochaetaceae were primarily delimited
by differences in their ascomata (ostiolate in Coniochaeta, and
non-ostiolate in Coniochaetidium and Ephemeroascus) (Malloch
& Cain 1971; van Emden 1973). The ornamentation of the
* Corresponding author.
E-mail address: josep.guarro@urv.net
0953-7562/$ – see front matter ª 2006 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
doi:10.1016/j.mycres.2006.07.007
1272
D. Garcı́a et al.
ascospore wall was also considered a useful criterion, and the
presence of pitted ascospores was used to justify the erection
of Poroconiochaeta (Udagawa & Furuya 1979). The presence of
phialidic, verticillate conidiogenous cells was considered a distinctive character separating Ephemeroascus from Coniochaetidium (van Emden 1973). Recent studies have demonstrated
that a taxonomic classification based only on morphological
characters frequently does not correlate with the phylogenetic
relationships inferred from DNA sequences (Réblová & Winka
2000; Réblová & Seifert 2004). Thus, the usefulness of some of
these morphological characters for delimiting supraspecific
taxa has been questioned. For instance, the presence of an ostiole in the ascoma has proven to be a variable character, not
useful for the delimitation of genera (von Arx 1973; Suh &
Blackwell 1999). The shape and ornamentation of the ascospores have also been considered homoplastic characters
with poor phylogenetic value in some groups of ascomycetes
(Dettman et al. 2001; Zhang & Blackwell 2002; Solé et al. 2002;
Miller 2003). In addition, the structure and morphology of
the conidiogenous cells seems to be insufficient for the delimitation of taxa at the generic level (Réblová & Winka 2000).
The main aim of this study was to determine the phylogenetic relationships among the genera recognized in the Coniochaetaceae. For this purpose we performed analyses of the SSU
and LSU rDNA gene sequences from a set of strains of representative species of this family.
Materials and methods
Strains studied
The fungi sequenced in this study are listed in Table 1. Additional sequences obtained from GenBank are listed in Table 2.
DNA extraction, PCR amplification, sequencing,
and sequence alignment
The DNA was isolated as described by Cano et al. (2004). Detailed protocols for the amplification and sequencing of the
SSU and LSU rDNA genes were described in Cano et al.
(2002a) and Garcı́a et al. (2004), respectively.
Phylogenetic analyses
Phylogenetic analyses were performed using the NJ method
(Saitou & Nei 1987) with the MEGA 2.1 computer program
(Kumar et al. 2001). The trees were constructed using the
Kimura-2-parameter distance model (Kimura 1980) with the
pairwise deletion of gaps option. The robustness of branches
was assessed by BS analysis with 1000 replicates.
Results and discussion
General analysis
Fig 1 shows the phylogenetic tree of the partial SSU rDNA
sequences of 29 strains, belonging to 11 species of Coniochaetaceae, some representative members of the class Sordariomycetes, and Aphanoascus mephitalis as out-group. Three major
clades were formed, which corresponded to the three subclasses of Sordariomycetes, i.e. Hypocreomycetidae (98 % BS
value), Sordariomycetidae (86 % BS value), and Xylariomycetidae
(73 % BS value). The recently erected order Coniochaetales
(Huhndorf et al. 2004) formed a well-supported subclade
(81 % BS value) within the Sordariomycetidae. In this analysis
the genus Coniochaeta, as currently circumscribed, was found
to be polyphyletic. C. nodulisporioides was placed within the
Xylariomycetidae very far from the other species of the genus,
which were mixed with species of the genera Coniochaetidium,
Ephemeroascus, and Poroconiochaeta.
Since in pyrenomycetes domains of the LSU rDNA gene
have been found to evolve more rapidly than the SSU rDNA
gene (Zhang & Blackwell 2002), partial sequences of the former
were used to study the relationships between Coniochaeta and
allied genera and to investigate more precisely the placement
of C. nodulisporioides. Fig 2 shows the phylogenetic tree
obtained from the analysis of 44 strains, belonging to different
species of the class Sordariomycetes. In this analysis we have
Table 1 – Source of specimens examined and sequenced in this study
Species
Coniochaeta cruciata
C. hansenii
C. nodulisporioides
C. tetraspora
Coniochaetidium boothii
C. ostreum
Coniolaria murandii
Ephemeroascus verticillatus
Poroconiochaeta discoidea
P. punctulata
P. savoryi (syn. Thielavia savoryi)
P. tetraspora
Strains
FMR 7409
CBS 885.68
CBS 281.77T
FMR 8167
CBS 381.74T
CBS 507.70T
LCP 04.5004
CBS 816.71T
CBS 158.80T
FMR 7408
CBS 725.74T
FMR 7415T
Source
Soil, Nigeria
Dung of rabbit, The Netherlands
Soil, Jordan
Soil, Spain
Soil, India
Twig of Larrea sp.
Soil, USA
Soil, The Netherlands
Soil, Japan
Soil, Argentina
Wood of Juniperus scopulorum, UK
Soil, Russia
EMBL no.
SSU
LSU
AJ875176
AJ875182
AJ875185
AJ875178
AJ875181
AJ875184
AJ875222
AJ875223
AJ875224
AJ875225
AJ875226
AJ875227
AJ875233
AJ875232
AJ875230
AJ875231
AJ875229
AJ875228
AJ875183
AJ875179
AJ875175
AJ875180
AJ875177
CBS, Centraalbureau voor Schimmelcultures (Utrecht); FMR, Culture Collection, Facultad de Medicina (Reus); LCP, Laboratoire de Cryptogamie,
Muséum National d’Histoire Naturelle (Paris). T, type or ex-type culture.
Molecular phylogeny of Coniochaetales
1273
Table 2 – Sequences obtained from GenBank and used in
the present study
Species
EMBL no.
SSU
LSU
Achaetomium globosum
A. luteum
Albertiniella polyporicola
Aphanoascus mephitalis
Apioclypea sp.
Apiospora setosa
A. sinensis
Aporothielavia leptoderma
Appendicospora sp.
Arthrinium phaeospermum
Ascotricha chartarum
A. guamensis
A. lusitanica
A. xylina
Astrocystis cocoës
Aureobasidium pullulans
Barrina polyspora
Camarops microspora
Cephalotheca sulfurea
Cercophora septentrionalis
Chaetomium globosum
Clypeosphaeria uniseptata
Coniochaeta lignaria
–
–
–
AB015779
–
–
–
–
–
–
AB048283
AB048281
AB048282
AB048789
–
–
–
–
–
–
–
–
–
C. malacotricha
–
C. pulveracea
–
C. subcorticalis
C. tetraspora
C. velutina
Coniochaeta sp.
Cryptendoxyla hypophloia
Cryptosphaeria eunomia
Daldinia concentrica
Diaporthe decedens
D. detrusa
Diatrype disciformis
Dicyma olivacea
Discula destructiva
D. umbrinella
Dothidea sambuci
Eutypa sp.
–
AF048813
–
AF048799
–
–
U32402
–
–
U32403
AB048284
–
–
–
–
Fasciatispora petrakii
Graphostroma platystoma
Halorosellinia oceanica
Hypocrea gelatinosa
H. lutea
H. schweinitzii
Hypomyces polyporinus
Hyponectria buxi
Hypoxylon fragiforme
H. haematostroma
Lasiosphaeria ovina
Lecythophora decumbens
L. fasciculata
L. hoffmanii
L. lignicola
L. luteoviridis
–
–
–
–
–
L36986
U32410
–
AY083810
AF346543
–
–
–
–
–
–
AJ312097
AJ312105
AF096185
–
AY083836
AY346259
AY083831
AF096186
AY083833
AY083832
–
–
–
–
AY083823
AF050239
AY346258
AY083821
AF096188
U47823
U47825
AY083830
AF353583
AF353584
AF353586
AF353588
AF353589
AF353590
AF353591
AF353592
AF353593
–
AF353594
–
AF096190
AY083826
U47828
AF408348
AF408349
U47829
–
AF408359
AF408359
AF382387
AY083825
AY346280
AY083828
AY083827
AY083822
U00737
U00739
–
–
AY083834
AY083829
–
AF064643
AF353597
AF353598
AF353599
AF353601
AF353603
(continued on next page)
Table 2 (continued)
Species
EMBL no.
SSU
L. mutabilis
Nectria cinnabarina
N. pseudotricha
Neocosmospora vasinfecta
Oxydothis frondicola
Rosellinia necatrix
Sordaria fimicola
S. humana
Wallrothiella subiculosa
Xylaria curta
X. hypoxylon
–
U32412
–
U32414
–
–
–
AF48811
–
U32417
U20378
LSU
AF353605
U00748
U17410
–
AY083835
AY083824
AF132330
–
U17428
U47840
U47841
included also the genera Barrina, recently related to Coniochaetales (Huhndorf et al. 2004), Coniolaria, a genus very similar to
Coniochaeta but with a holoblastic anamorph (Seigle-Murandi
et al. 1995); and moreover Wallrothiella subiculosa, which
showed a confused taxonomic position within Sordariales
(Réblová & Winka 2000). The topology of the tree was similar
to that derived from SSU sequence data. The order Coniochaetales received a high BS support (96 %), the species of Coniochaeta again were revealed as polyphyletic, and the
placement of C. nodulisporioides within the subclass Xylariomycetidae was also confirmed. Similarly to Coniochaeta, the genera
Coniochaetidium, Ephemeroascus, and Poroconiochaeta did not
form natural groups. The species of these genera were distributed in different branches, interspersed with species of other
genera. Interestingly, W. subiculosa appeared within the Coniochaetales clade, and Coniolaria murandii was in the subclass
Xylariomycetidae, related to two species of Xylaria (Xylariaceae)
included in the study (73 % BS value).
Fig 3 shows the phylogenetic tree derived from the analysis of LSU rDNA sequences but restricted only to members of
Coniochaetales. In this study Aporothielavia leptoderma, Lasiosphaeria ovina, and Sordaria fimicola (Sordariales) were used as
out-group. All the strains of Coniochaetales formed an ingroup with 98 % of BS support. They were distributed among
three major clades and a basal group, although, in general,
only terminal branches received a significant BS support. Coniochaeta was revealed as paraphyletic and its species
appeared distributed into the different clades interspersed
with members of the other genera included in the study. Barrina polyspora, C. cruciata, C. hansenii, and W. subiculosa,
formed a first basal group, although they were genetically
distant from each other. Three strains of C. malacotricha, the
type species of Coniochaetidium (C. ostreum), and E. verticillatus
formed clade I, although not well-supported. Clade II included
a branch with the single species Lecythophora hoffmannii, and
a well-supported group (85 % BS value) constituted by three
strains of Coniochaeta ligniaria, one of C. velutina, and one
each of the following four species of Lecythophora:
L. fasciculata, L. lignicola, L. mutabilis, and L. luteoviridis. Clade
III was divided into two branches. The basal branch was
only formed by the type species of genus Poroconiochaeta
(P. discoidea), that appeared very far from the other species
1274
D. Garcı́a et al.
Dicyma olivacea
Ascotricha guamensis
Subclass Xylariomycetidae
Ascotricha chartarum
97
Ascotricha lusitanica
Ascotricha xylina
Daldinia concentrica
75
Hypoxylon fragiforme
Hypoxylon haematostroma
Coniocessia nodulisporioides
73
76
Xylaria curta
Xylaria hypoxylon
Diatrype disciformis
Sordaria fimicola
Subclass Sordariomycetidae
Coniochaeta tetraspora
Coniochaeta tetraspora
86
Coniochaeta sp.
Coniochaetidium boothii
Ephemeroascus verticillatus
81
Poroconiochaeta discoidea
Poroconiochaeta punctulata
Poroconiochaeta savoryi
Coniochaeta hansenii
Coniochaeta cruciata
100
98
Nectria cinnabarina
Neocosmospora vasinfecta
100
Hypocrea schweinitzii
Hypomyces polyporinus
Subclass
Hypocreomycetidae
Poroconiochaeta tetraspora
Aphanoascus mephitalis
0.01
Fig 1 – NJ tree based on nucleotide sequences of the SSU rDNA gene. Branch lengths are proportional to genetic distance,
indicated by a bar. BS values of 70% or greater are indicated above the internodes.
of this genus included in the study. The second branch
encompassed three well-supported groups. The first comprised Coniochaetidium boothii, Coniochaeta subcorticalis, and
C. pulveracea (100 % of BS value); the second one comprised
C. tetraspora and L. decumbens (97 % of BS support); and the
third grouped three species of Poroconiochaeta, P. punctulata,
P. savoryi, and P. tetraspora (96 % BS support).
Fig 4 shows the phylogenetic tree obtained from the analysis of LSU sequences of 27 strains of six families of Xylariales
(Apiosporaceae, Clypeosporaceae, Diatrypaceae, Graphostomataceae, Hyponectriaceae, and Xylariaceae), and the aim of this analysis was to determine more precisely the phylogenetic
relationships of C. nodulisporioides and C. murandii, which previous threes excluded from Coniochaetales, with members of
such families. Some members of Sordariales, i.e. Aporothielavia
leptoderma, Lasiosphaeria ovina, and Sordaria fimicola, were used
as out groups. Although few members of each family were included in the analysis, only Diatrypaceae (98 % BS value) and
Apiosporaceae (100 % BS value) were phylogenetically supported. Xylariaceae was revealed as polyphyletic. Hypoxylon fragiforme and Daldinia concentrica were grouped in the basal clade
(98 % BS support), which was very distant from the other
species of Xylariaceae such as Astrocystis cocoës, Fasciatispora
petrakii, Halorosellinia oceanica, Rosellinia necatrix, and X. hypoxylon. Coniochaeta nodulisporioides showed a certain, although distant relationship with Oxydothis frondicola, and members of
Hyponectriaceae (Appendicospora sp. and Hyponectria buxi). Coniolaria murandii appeared to be related with A. cocoës and R. necatrix, members of Xylariaceae (78 % BS value).
In general, the analyses from the LSU rDNA sequences correlated poorly with the morphological criteria used for delimiting genera in Coniochaetales, suggesting that the current
taxonomic classification is artificial.
Our analysis seems to demonstrate that Xylarioideae and
Hypoxyloideae are not closely related as traditionally accepted.
This could be due to insufficient taxon sampling and to the use
of poorly characterized reference sequences. These results are
in contrast to the recent analysis of Triebel et al. (2005), based
on 5.8 S/ITS rDNA sequences, which, although resulted in
a low resolution at the infrageneric level, recognized the two
core groups (Hypoxyloideae/Xylarioideae) as monophyletic
with Diatrypaceae as a sister group. In another recent study
the rDNA sequences were regarded as difficult to align and
interpret and then discarded to infer the phylogeny of
Molecular phylogeny of Coniochaetales
1275
Coniochaeta hansenii
Barrina polyspora
72
Coniochaeta cruciata
Wallrothiella subiculosa
Poroconiochaeta discoidea
Coniochaeta ligniaria
Coniochaeta velutina
92
Coniochaeta tetraspora
Poroconiochaeta tetraspora
96 96
Order
Coniochaetales
Ephemeroascus verticillatus
Coniochaeta malacotricha
Coniochaetidium ostreum
100
91
Coniochaetidium boothii
Coniochaeta pulveracea
Coniochaeta subcorticalis
100
99
Diaporthe decedens
Diaporthe detrusa
100
Discula destructiva
Discula umbrinella
Order
Diaporthales
Cryptendoxyla hypophloia
Cephalotheca sulfurea
Albertiniella polyporicola
98
Family
Cephalothecaceae
Poroconiochaeta punctulata
Poroconiochaeta savoryi
Lasiosphaeria ovina
89
Sordaria fimicola
96
Aporothielavia leptoderma
Chaetomium globosum
100
100
88
73
Hypocrea gelatinosa
Hypocrea lutea
Nectria cinnabarina
Nectria pseudotrichia
Xylaria curta
Xylaria hypoxylon
Coniolariella gamsii
Diatrype disciformis
Coniocessia nodulisporioides
99
Order
Xylariales
91
Order
Hypocreales
Achaetomium globosum
Achaetomium luteum
Order
Sordariales
Cercophora septentrionalis
Hypoxylon fragiforme
Daldinia concentrica
100
Dothidea sambuci
Aureobasidium pullulans
0.05
Fig 2 – NJ tree based on nucleotide sequences of the LSU rDNA gene. Branch lengths are proportional to distance. BS
values of 70% or greater are indicated above the internodes.
Hypoxyloideae. However, from analysis of actin and b-tubulin
sequences the major groups were reflected as inferred from
morphological and chemical traits (Hsieh et al. 2005). However,
in a study on Diatrypaceae also based on rDNA sequences,
Acero et al. (2004) were unable to recognize the classical
boundaries among this fungal group. It is possible that rDNA
may have evolved independently from morphological traits
to some extent in many groups of fungi, and if further molecular studies confirm this, it would be reasonable to use different concepts for Coniochaetales and Xylariales.
Coniochaeta
Concerning Coniochaeta, the different analyses demonstrated
that C. hansenii and C. cruciata were the most divergent species.
Both were included in a basal clade together with Barrina and
Wallrothiella (Fig 3). C. hansenii has only been reported from
dung (Mahoney & LaFavre 1981; Checa et al. 1988), and as other
coprophilic species (e.g. C. multispora, C. philocoproides,
C. polymegasperma, C. polysperma) this species is characterized
by multispored asci. C. cruciata was described based on only
1276
D. Garcı́a et al.
Poroconiochaeta punctulata
Poroconiochaeta savoryi
96
Poroconiochaeta tetraspora
Coniochaeta tetraspora
Lecythophora decumbens
100
Coniochaetidium boothii
92
Clade III
97
Coniochaeta subcorticalis
Coniochaeta pulveracea
86
Coniochaeta pulveracea
Poroconiochaeta discoidea
Lecythophora hoffmannii
Coniochaeta ligniaria
97
Coniochaeta ligniaria
Clade II
Coniochaeta ligniaria
Lecythophora mutabilis
85
Lecythophora fasciculata
Coniochaeta velutina
Lecythophora lignicola
Lecythophora luteoviridis
Ephemeroascus verticillatus
98
100
Clade I
Coniochaetidium ostreum
Coniochaeta malacotricha
Coniochaeta malacotricha
Coniochaeta malacotricha
Wallrothiella subiculosa
Coniochaeta hansenii
Coniochaeta cruciata
Barrina polyspora
Lasiosphaeria ovina
87
Sordaria fimicola
Aporothielavia leptoderma
0.01
Fig 3 – NJ tree based on nucleotide sequences of the LSU rDNA gene from different taxa related with Coniochaeta. Branch
lengths are proportional to distance. BS values of 70% or greater are indicated above the internodes.
one strain isolated from Quercus ilex (Checa et al. 1988). This
species is easily differentiated by its cruciform ascospores
(in optical section), which resemble those of the soil-borne
C. extramundana. Recent studies in Sordariales and Xylariales
demonstrated that the number of ascospores per ascus and
the ascospore morphology are homoplastic characters, which
have appeared several times in the course of evolution, and
are without phylogenetic value at generic level (Miller 2003;
Acero et al. 2004). On the basis of their peculiar characteristics
and the relative genetic distance from the rest of the species of
Coniochaeta, it could be acceptable to erect two new genera to
accommodate C. cruciata and C. hansenii. However, at the moment we have included both species in Coniochaeta because
they have the most distinctive morphological features of
this genus. This distant phylogenetic position from the rest
of Coniochaeta could be a result of a limited number of species
being included in the analyses. The close genetic relationship
between C. tetrasperma and Lecythophora decumbens indicates
that probably they are two states of the same species; the latter had not previously been connected to any teleomorph
(Weber 2002; Weber et al. 2002), but the conidial state of C. tetrasperma described by Cain (1961) was very similar to L. decumbens. Both form reduced adelophialides, and the shape and
size of conidia are also similar (Cain 1961; Weber 2002). The
different colour of the colonies, dark in L. decumbes and pinkish in C. tetrasperma, does not seem to be of phylogenetic
value, because the well-supported clade III formed by C. ligniaria, C. velutina, and some species of Lecythophora (Fig 3) encompasses species with pinkish to salmon–orange colonies, as
well as species with darker ones.
The present study also showed that C. nodulisporioides,
which possesses an anamorph with holoblastic conidiogenesis
(Hawksworth 1978), is close to Xylariales (Figs 1–2, 4). This agrees
with previous authors (Barr 1990; Laessøe 1994; Hawksworth &
Rogers, in Barr & Cannon 1994), who considered that
Coniochaeta should be restricted to the species with
Molecular phylogeny of Coniochaetales
1277
Astrocystis cocoës
78
Coniolariella gamsii
Rosellinia necatrix
Xylaria curta
Xylaria hypoxylon
Halorosellinia oceanica
Graphostroma platystoma
Cryptosphaeria eunomia
99
Eutypa sp.
Diatrype disciformis
74
Eutypa sp.
Fasciatispora petrakii
Apioclypea sp.
Clypeosphaeria uniseptata
Apiospora setosa
99
100
Apiospora sinensis
Arthrinium phaeospermum
Coniocessia nodulisporioides
100
Oxydothis frondicola
Appendicospora sp.
Hyponectria buxi
98
Hypoxylon fragiforme
Daldinia concentrica
Camarops microspora
Lasiosphaeria ovina
Sordaria fimicola
Aporothielavia leptoderma
0.02
Fig 4 – NJ tree based on nucleotide sequences of the LSU rDNA gene from different genera of Xylariales, Coniolaria
murandii, and Coniochaeta nodulisporioides. Branch lengths are proportional to distance. BS values of 70% or greater are
indicated above the internodes.
phialidic anamorphs and that those species with a Nodulisporium- or Geniculosporium-like anamorph (e.g. C. nodulisporioides,
C. emodensis) should be excluded from the genus. In Xylariales,
molecular studies have demonstrated that the type of anamorph is of taxonomic value (Sánchez-Ballesteros et al. 2000;
Sánchez-Ballesteros 2001). The hyaline anamorph of C. nodulisporioides is unique in Xylariales, and in spite of the members of
Nodulisporium being pigmented, it has been considered Nodulisporium-like (Hawksworth 1978). Based on molecular and
morphological data, we propose the new genus Coniocessia
to accommodate C. nodulisporioides, although its inclusion
in any of the known families of Xylariales needs further
investigation.
The morphological features of Coniocessia are similar to
those of Xylariaceae, but this study seems to demonstrate
that this species is phylogenetically closer to Hyponectriaceae
than to Xylariaceae (Fig 4).
However, these data have to be taken with caution considering the BS support is very low and that the latter family
needs redefinition. Members of Hyponectriaceae, as well as
members of the other families of Xylariales, with the exception
of Xylariaceae, can be differentiated from Coniocessia by their
hyaline, yellow to pinkish or light brown ascospores, and by
the absence of an elongate germ-slit (Barr 1990; Hyde et al.
1998). In this study, Oxydothis frondicola was the species genetically closest to Coniocessia (Fig 4). However, species of Oxydothis are characterized by long, cylindrical asci with an
amyloid sub-apical apparatus, and hyaline to light brown,
long to filiform, bicellular ascospores lacking an elongate
germ-slit, and in addition, they have a Selenosporella-like anamorph (Samuels & Rossman 1987; Barr 1990; Fröhlich & Hyde
1994).
Udagawa & Horie (1982) proposed Coniochaeta emodensis (for
a single isolate from soil in Nepal (Fig 5). It is characterized by
non-stromatic ascomata, non-amyloid asci, dark brown ascospores with a longitudinal germ-slit, and an anamorph with
holoblastic, sympodial conidiogenesis, and denticulate conidiogenous cells. Unfortunately, material of this species was
not available for study. However, the authors provided a detailed description and very informative illustrations of the
species, which allow its recognition as a member of Xylariales.
Some authors have considered C. emodensis and C. nodulisporioides to be closely related species (Udagawa & Horie 1982;
Barr 1990; Laessøe 1994), but we think that they are not
1278
D. Garcı́a et al.
Fig 5 – Coniochaeta emodensis. A. Asci with ascospores. B. Ascospores. C. Conidiophores, conidiogenous cells, and
conidia. Bars [ 10 mm.
congeneric. Their anamorphs are very different: C. nodulisporioides has hyaline conidiophores and conidia, and swollen
conidiogenous cells with persistent conspicuous denticles,
whereas C. emodensis possesses pale yellowish brown conidiophores and conidiogenous cells with very short and fragile
denticles. The anamorph of C. emodensis, as well as those of
some members of Xylariaceae (Collodiscula, Entoleuca, Euepixylon, Leprieuria, Nemania, Podosordaria, Rosellinia, and Whalleya)
(Whalley 1996; Rogers et al. 2002) has been referred to as Geniculosporium or Geniculosporium-like. However, all these species
are morphologically very different from C. emodensis. They
are characterised by well-developed stromatic tissues, which
in some genera are also multiperitheciate (Entoleuca, Euepixylon, Leprieuria, Nemania, Podosordaria, and Whalleya), bipartite
(Whalleya) or stipitate (Leprieuria); and by asci with a distinct,
and often amyloid apical apparatus. Moreover, ascospores in
Euepixylon have a poroid germ-slit and an inconspicuous,
hyaline appendage in immature stages (Rogers et al. 2002; Fournier & Magni 2004), and Collodiscula, has two-celled ascospores
which lack a distinct germination site (Samuels et al. 1987). Although the circumscription of Xylariaceae and the delimitation
of their genera remain unclear (Whalley 1996; Sánchez-Ballesteros 2001; Smith et al. 2003), we think that C. emodensis belongs
to an undescribed genus of that family. However, as no molecular data are available to confirm this at this moment a new
genus for C. emodensis is not proposed.
Coniochaetidium
The genus Coniochaetidium is only distinguished from Coniochaeta by the presence of cleistothecial ascomata. It encompasses four species, C. boothii, C. mirabile, C. nuciforme, and
C. ostreum (Malloch & Cain 1971; von Arx 1975; Udagawa &
Tsubouchi 1986; Guarro et al. 1997; Garcı́a et al. 2003).
Molecular phylogeny of Coniochaetales
However, our phylogenetic analyses confirmed that this
character was of poor taxonomic value. The two species included in the study, C. ostreum and C. boothii, were nested in
different groups, interspersed with species of Coniochaeta
and Ephemeroascus. Coniochaetidium is therefore treated as
a synonym of Coniochaeta. As mentioned above, the nature
of the anamorph has been proved to be a phylogenetic informative character in Coniochaetales. However, the conidial
state in C. ostreum was simply described as producing ‘aleuriospores’ (Malloch & Cain 1971), an obsolete and confused
term (Hughes 1953; Kendrick 1971; Kirk et al. 2001). Von
Arx (1975) referred to the presence of blastoconidia, although we were not able to see such conidia in an ex-type
culture. Instead, we observed only abundant chlamydospores in chains or arising terminally. A holoblastic anamorph with a retrogressive conidiogenesis was described
for C. mirabile, and identified as a member of Cladobotryum
(Udagawa & Tsubouchi 1986). Retrogressive conidiogenesis
is quite rare in conidial fungi (Kendrick 1985), but has been
described for some anamorphic states of Hypomyces such
as Cladobotryum and Trichothecium (Rogerson & Samuels
1993; Gams et al. 1998). However, phylogenetic studies in
Hypomyces suggested that retrogressive conidiogenesis does
not have taxonomic value at the suprageneric level. Species
of Hypomyces with retrogressive conidiogenesis formed
a clade, which also included other species with phialidic
conidiogenesis (Verticillium and Gliocladium) (Põldmaa et al.
1999). Therefore, C. mirabile is accepted here as member of
the re-circumscribed genus Coniochaeta.
1279
Ephemeroascus
van Emden (1973) erected the genus Ephemeroascus for a single
species isolated from soil in The Netherlands, characterized
by cleistothecial ascomata and ascospores with an elongate
germ-slit. That author separated E. verticillatus from Coniochaetidium on the presence of phialoconidia, and excluded it from
Coniochaetaceae because of the absence of pinkish orange
colonies, because Malloch & Cain (1971) had referred to this
feature as one of the most distinctive characters in the family.
However, C. velutina and some species of Lecythophora are
characterized by the production of more darkly pigmented
colonies (Weber 2002). The anamorph of Ephemeroascus was
described having erect conidiophores and discrete phialides
in a verticillate arrangement (van Emden 1973), which was
later defined as Verticillium-like (von Arx 1975; Mahoney &
LaFavre 1981; Kirk et al. 2001). A similar anamorph was observed in C. cypraeaspora (van der Linde 1991) and was referred
to as Paecilomyces-like. Future molecular studies are needed to
evaluate when the presence of a verticillate anamorph has
phylogenetic value within Coniochaeta, but our results suggest
that this character or the presence of cleistothecial ascomata
are insufficient for excluding Ephemeroascus from Coniochaeta.
Both genera are therefore treated here as synonyms.
Poroconiochaeta
The distinctive character used to segregate Poroconiochaeta
from Coniochaeta was the presence of pitted ascospores in
Fig 6 – Coniochaeta species with ornamented ascospores (SEM). A. C. discoidea. B–C. C. ornata. D–E. C. punctulata.
F. C. savoryi. Bars [ 10 mm.
1280
the former (Udagawa & Furuya 1979). The ornamentation of
the ascospore wall had been traditionally considered an important taxonomic character to define genera in many groups
of ascomycetes. However, in recent years numerous studies
have demonstrated that generic distinction based only on
this character does not have phylogenetic support (SánchezBallesteros 2001; Dettman et al. 2001; Cano et al. 2002b; Solé
et al. 2002; Sugiyama et al. 2002; Zhang & Blackwell 2002; Huhndorf et al. 2004; Garcı́a et al. 2004). This has been confirmed by
our results. The species of Poroconiochaeta did not form
a monophyletic group, but they were interspersed with species of Coniochaeta and Coniochaetidium (Figs 2–3). A detailed
examination of all the species accepted in the genus Poroconiochaeta revealed that the most representative features of the
D. Garcı́a et al.
colonies, ascomata, asci, and even the anamorph of
P. discoidea (Udagawa & Furuya 1979) were similar to those
described for the genus Coniochaeta. Therefore, Poroconiochaeta
is also considered a synonym of Coniochaeta.
Other genera
Wallrothiella is a large and confused genus, which has been
considered to be a member of Trichosphaeriaceae (Trichosphaeriales) (von Arx & Müller 1954), Niessliaceae (Hypocreales) (Barr
1990) or related to Chaetosphaeriaceae (Chaetosphaeriales)
(Samuels & Barr 1997; Réblová & Winka 2000). Phylogenetic
studies based on LSU sequences excluded it from the cited
families, but did not resolve its taxonomic position (Zhang &
Fig 7 – Some representative types of Coniochaeta ascospores. A. C. angustispora. B. C. arxii. C. C. boothii. D. C. cephalothecoides.
E. C. cruciata. F. C. discoidea. G. C. malacotricha. H. C. mirabile. I. C. nuciforme. J. C. Ornata. Bars [ 10 mm.
Molecular phylogeny of Coniochaetales
Blackwell 2002; Réblová & Winka 2000; Réblová & Seifert 2004).
Wallrothiella is characterized by non-stromatic perithecia, asci
with a non-amyloid apical ring, hyaline, globose ascospores
with no germ pore or slit, and a phialidic anamorph described
for W. subiculosa (syn. Pseudogliomastix protea) (Gams & Boekhout 1985) characterized by branched, pigmented conidiophores and somewhat darker conidia. Our LSU rDNA
sequences analyses showed that W. subiculosa belonged to
the Coniochaetales.
Barrina is a monotypic genus characterized by immersed
ascomata, multispored asci, and one-celled, hyaline ascopores, which germinate within the ascus producing a phialidic
anamorph (ascoconidia) (Ramaley 1997). Ramaley (1997) and
Gams (2000) considered this genus to be related to Lasiosphaeriaceae and indicated a close resemblance of that anamorph
with Lecythophora. Our results agree with Huhndorf et al.
1281
(2004), who demonstrated a close phylogenetic relationship
between Barrina and Coniochaeta.
The placement of Wallrothiella and Barrina in Coniochaetales
revealed here (Figs 2–3) was unexpected because the ascospores of these genera are hyaline and do not have germ-slits.
However, according to Rogers (1994), this feature is of poor
phylogenetic value at the suprageneric level because the presence of germ-slit has showed a convergent evolution and
appeared many times in different groups of fungi such as
Hypocreales (Hypocreomycetidae) and Xylariales (Xylariomycetidae). Our results suggest that the presence of a phialidic anamorph in Coniochaetales is more phylogenetically informative
than the presence of germ-slits, and that Barrina and Wallrothiella must be included in Coniochaetales.
Synaptospora is another genus included in Coniochaetaceae
(Eriksson & Hawksworth 1993) that has ascospores without
Fig 8 – Some representative types of Coniochaeta ascospores. A. C. ostrea. B. C. ovata. C. C. punctulata D. C. saccardoi.
E. C. savoryi. F. C. scatigena. G. C. verticillata. Bars [ 10 mm.
1282
a germ-slit. Its ascospores are one-celled, brown, and globose,
and tend to fuse in groups (Cain 1957). Although some authors
considered that its relationships with members of Coniochaetaceae are unclear (Huhndorf et al. 1999; Réblová 2002), our studies demonstrate that the absence of germ-slit is not an
excluding character for pertaining to Coniochaetales. The type
of perithecia and the absence of a germ-slit relate this genus
to W. subiculosa.
Seigle-Murandi et al. (1995) proposed the genus Coniolaria
for a single isolate with some features typical of Coniochaeta
D. Garcı́a et al.
but with a holoblastic Dactylaria-like anamorph. Recently,
Eriksson et al. (2004) accepted Coniolaria as a member of Coniochaetaceae. Our results demonstrated that the accommodation
of this genus in Xylariales, as proposed by other authors
(in http://www.indexfungorum.org), is more appropriate.
Genera of Xylariaceae that do not have stromatic tissues are
Ascotricha, Ascotrichella, and Calceomyces. Coniolaria can be differentiated from the genera mentioned by the type of anamorph, which have been described as Dicyma, Humicola-like,
and Nodulisporium-like respectively (Hawksworth 1971;
Fig 9 – Some representative types of Coniochaetaceae anamorphs. A. Barrina polyspora (Lecythophora-like). B. Coniochaeta
boothii (chlamydospores). C. C. cypraespora (Paecilomyces-like). D. C. ligniaria (Lecythophora sp.). E. C. mirabile (Cladobotryumlike). F. C. ostrea (clamydospores). G. C. vetulina (Lecythophora sp.). H. C. verticillata (Verticillium-like). I. Wallrothiella subiculosa
(Pseudogliomastix protea). Bars [ 10 mm.
Molecular phylogeny of Coniochaetales
Udagawa & Ueda 1988; Valldosera & Guarro 1988; Whalley
1996; Rogers et al. 2002; Fournier & Magni 2004). Moreover,
Calceomyces has reticulate ascospores and asci with an amyloid apical ring (Udagawa & Ueda 1988).
In the original description of C. murandii, a Dactylaria anamorph was described and illustrated (Seigle-Murandi et al.
1995). However, we have examined an ex-type culture of this
species and noticed some characters not typical of that genus.
Dactylaria forms hyaline conidia from cylindrical denticulate
conidiogenous cells on sympodially proliferating erect conidiophores (de Hoog 1985; Goh & Hyde 1997). However, C. murandii
(i.e. C. gamsii) has branched conidiophores from which emerge
pigmented conidia that often give rise to one or several short
chains of secondary conidia. These characters do not fit with
the description of Dactylaria, but they are distinctive of Rhinocladiella (de Hoog 1977), which has some resemblance to Geniculosporium and Nodulisporium (Barron 1983). Rhinocladiella has
been connected with some xylariaceous genera such as Hypoxylon and Obolarina (Petrini & Müller 1986; Candoussau &
Rogers 1990; Laessøe & Spooner 1994; Whalley 1996), but in
1283
recent revisions of Xylariaceae its anamorphs have been
assigned to Nodulisporium- or Virgariella-like genera (Ju et al.
1998; Rogers et al. 2002). In addition, some molecular studies
have connected Rhinocladiella with Capronia (Herpotrichiellaceae,
Chaetothyriales) (Spatafora et al. 1995; Haase et al. 1999). Further
studies are required to ascertain a more concrete position of
the anamorph of C. gamsii among the hyphomycetes genera.
Coniolaria has some morphological resemblance to Obolarina. Both genera have non-amyloid short stipitate asci without
a distinct apical apparatus (Candoussau & Rogers 1990; SeigleMurandi et al. 1995; Rogers et al. 2002; Fournier & Magni 2004).
However, Obolarina has bipartite, multiperitheciate stromata,
an anamorph characterized by unbranched coniodiophores,
and inconspicuous conidial secession scars, ramoconidia being absent (Candoussau & Rogers 1990). The generic name
Coniolaria was not published validly so we propose the new
name Coniolariella here. Recently, the new species Coniochaeta gamsii identical to the previously not validly published
name C. murandii has been described from barley leaves in
Iran (Asgari & Zare 2006).
Fig 10 – Coniocessia nodulisporioides. A. Detail of the peridium. B–D. Asci. E–G. Ascospores. H. Ascospores (SEM). I–M.
Anamorph (SEM). Bars [ 10 mm.
1284
Taxonomy
Coniochaeta (Sacc.) Cooke, Grevillea 16: 16 (1887).
(Figs 8, 9).
Coniochaetidium Malloch & Cain, Can. J. Bot. 49: 878 (1971).
Ephemeroascus Emden, Trans. Br. mycol. Soc. 61: 599 (1973).
Poroconiochaeta Udagawa & Furuya, Trans. mycol. Soc. Japan 20:
5 (1979).
Ascomata superficial or semi-immersed in the natural substrate, superficial or sometimes immersed in culture, pyriform and ostiolate or globose and non-ostiolate; setose,
hairy or glabrous; dark or slightly pigmented. Peridium membranaceous to pseudoparenchymatous, rarely coriaceous;
textura angularis, intrincata, or less frequently cephalothecoid.
Asci cylindrical, clavate, sub-globose or near globose, short
stipitate, with a truncate to rounded apex, usually with
a conspicuous to indistinct non-amyloid apical ring, 4-,
8- to multispored, thin-walled, evanescent. Hamathecium
paraphysate or absent. Paraphyses when present numerous,
hyaline, filiform, simple, septate, and evanescent. Ascospores
narrowly ellipsoid to fusoid, broadly ellipsoidal to globose,
lenticular or cruciform, with rounded to apiculate ends, flattened on one or both sides; one-celled, smooth or pitted;
brown to dark brown, olive-greenish to dark olivaceous
or black; germ-slit straight, longitudinal, conspicuous or indistinct, rarely go all the way around the spore; sheath
hyaline, gelatinous, present in some species. Anamorphs belonging to Lecythophora, Verticillium, Paecilomyces, and
Cladobotryum.
Type species: Coniochaeta ligniaria (Grev.) Massee, Grevillea
16: 37 (1887).
Note: According the on-line version of the Index Fungorum
(http://www.speciesfungorum.org/Names/Names.asp),
the
genus Coniochaeta includes around 70 species and six synonyms. Although that was not monographed, three articles
included keys for species of Coniochaeta known in pure culture
(Hawksworth & Yip 1981), and isolated from Argentina
(Romero et al. 1999) and Spain (Checa et al. 1988). The larger
synopsis of Coniochaeta by Mahoney & LaFavre (1981), and
includes comparative tables for 33 species.
Coniochaeta boothii (Manohar. & P. Rama Rao) D. Garcı́a,
Stchigel & Guarro, comb. nov.
(Figs 7C and 9B)
Basionym: Thielavia boothii Manohar. & P. Rama Rao, Trans. Br.
mycol. Soc. 61: 196 (1973).
Coniochaetidium boothii (Manohar. & P. Rama Rao) Arx, Stud.
Mycol. 8: 26 (1975).
Strain examined: CBS 381.74T
D. Garcı́a et al.
Basionym: Coniochaetidium mirabile Udagawa & Tsub., Mycotaxon 27: 63 (1986).
Coniochaeta nuciforme (Guarro, Gené, Al-Bader & Abdullah)
D. Garcı́a, Stchigel & Guarro, comb. nov.
(Fig. 7I)
Basionym: Coniochaetidium nuciforme Guarro, Gené, Al-Bader &
Abdullah, Mycoscience 38: 123 (1997).
Strain examined: FMR 5776
Coniochaeta ornata D. Garcı́a, Stchigel & Guarro, nom. nov.
(Figs 6B–C, and 7J)
Basionym: Poroconiochaeta tetraspora D. Garcı́a, Stchigel &
Guarro, Mycologia 95: 525 (2003).
Strain examined: FMR 7408T
Non C. tetraspora Cain 1961.
Coniochaeta ornata has ostiolate and nonostiolate ascomata,
and four-spored asci. It can be easily differentiated from C. tetraspora by its pitted ascospores.
Coniochaeta ostrea (Malloch & Cain) D. Garcı́a, Stchigel &
Guarro, comb. nov.
(Figs 8A and 9F)
Basionym: Coniochaetidium ostreum Malloch & Cain, Can. J. Bot.
49: 879 (1971).
Strain examined: CBS 507.70T
Coniochaeta punctulata (Udawaga & Furuya) D. Garcı́a, Stchigel & Guarro, comb. nov.
(Figs 6D-E, and 8C)
Basionym: Poroconiochaeta punctulata Udagawa & Furuya,
Trans. mycol. Soc. Japan 20: 8 (1979).
Strain examined: FMR 7408
Coniochaeta savoryi (C. Booth) D. Garcı́a, Stchigel & Guarro,
comb. nov.
(Figs 6F and 8E)
Basionym: Thielavia savoryi C. Booth, Mycol. Pap. 83: 5 (1961).
Synonyms: Coniochaetidium savoryi (C. Booth) Malloch & Cain,
Can. J. Bot. 49: 880 (1971).
Germslitospora savoryi (C. Booth) Lodha, in Subramanian, Tax.
Fungi 1: 250 (1978).
Poroconiochaeta savoryi (C. Booth) D. Garcı́a, Stchigel & Guarro,
Mycologia 95: 528 (2003).
Strain examined: CBS 725.74T
Coniochaeta verticillata (Emden) D. Garcı́a, Stchigel & Guarro,
comb. nov.
(Figs 8G and 9H)
Basionym: Ephemeroascus verticillatus Emden, Trans. Br. mycol.
Soc. 61: 601 (1973).
Strain examined: CBS 816.71T
Coniochaeta discoidea (Udagawa & Furuya) D. Garcı́a, Stchigel
& Guarro, comb. nov.
(Figs 6A and 7F)
Basionym: Poroconiochaeta discoidea Udagawa & Furuya, Trans.
mycol. Soc. Japan 20: 6 (1979).
Strain examined: CBS 158.80T
Coniocessia D. Garcı́a, Stchigel, D. Hawksw. & Guarro, gen.
nov.
Etym.: cessio (L)-distant, moved away, referred to the exclusion of C. nodulisporiodes from Coniochaeta, the type species of
the new genus.
Coniochaeta mirabile (Udagawa & Tsub.) D. Garcı́a, Stchigel &
Guarro, comb. nov.
(Fig. 7H).
Ascomata subglobosa vel pyriformia, ostiolata. Asci cylindrici vel
subcylindrici, structura apicalis nula. Ascosporae unicellulares,
Molecular phylogeny of Coniochaetales
1285
Ascomata globosa, ostiolata, glabra. Asci cylindrici, structura apicalis nula. Ascosporae unicellulares, ellipsoideae, brunneae vel
nigrae, cum sulco germinalis longitudinale. Conidiophora ramosa;
cellulae conidiogenae integratae, denticulatae; conidia solitaria vel
in series breves ad ramoconidia.
Typus: Coniolariella gamsii (Agari & Zare) D. Garcı́a, Stchigel &
Guarro 2006.
Ascomata globose, ostiolate, glabrous, surrounded at the base
by brown, thick hyphae. Stroma absent. Peridium pseudoparenchymatous to coriaceous, textura intricata to textura angularis. Hamathecium paraphysate. Asci cylindrical, 8-spored,
without apical structures, non-amyloid. Ascospores one-celled,
ellipsoidal, brown, dark brown to black, smooth, without
sheath, germ-slit longitudinal. Conidiophores branched,
slightly pigmented. Conidiogenous cells integrate, sub-hyaline
to pale olive–brown, elongating sympodially, conidia-bearing
denticles with pigmented scars. Conidia sub-hyaline to pale olivaceous, solitary or in small chains on ramoconidia, with
pigmented scars at the base.
Coniolariella gamsii (Asgari & Zare) D. Garcı́a, Stchigel &
Guarro, comb. nov.
(Figs 12–13)
Basionym: Coniochaeta gamsii Asgari & Zare, Nova Hedwigia 82:
228 (2006).
Synonym: Coniolaria murandii Seigle-Mur., Guiraud, Steiman
& Sage, Cryptogamic Botany 5: 347 (1995); nom. inval.
(Art. 36).
Fig 11 – Coniocessia nodulisporioides. A. Asci with ascospores.
B. Ascospores. C. Conidiophore, conidiogenous cells, and
conidia. Bars [ 10 mm.
atrobrunneae, cum sulco germinalis longitudinale. Conidiophora
ramosa; cellulae conidiogenae integratae, polyblasticae et denticulatae; conidia laevia vel leniter verruculosa, subglobosa vel
pyriformia.
Typus: Coniocessia nodulisporioides.
Ascomata superficial, subglobose to pyriform, ostiolate, glabrous or pilose. Stroma absent. Peridium pseudoparenchymatous to coriaceous; outer layer with textura intricata. Asci
cylindrical to subcylindrical, without an apical ring. Hamathecium paraphysate. Ascospores one-celled, ellipsoidal, dark
brown, smooth-walled, with a longitudinal germ-slit. Conidiophores branched; conidiogenous cells integrate, terminal, discrete, polyblastic, denticulate; conidia smooth-walled or
slightly verruculose, subglobose to pyriform, apiculate at the
base.
Coniocessia nodulisporioides (D. Hawksw.) D. Garcı́a, Stchigel, D. Hawksw. & Guarro, comb. nov.
(Figs 10–11)
Basionym: Coniochaeta nodulisporioides D. Hawksw., Norw. J. Bot.
25: 15 (1978).
Strain examined: CBS 281.77T
Coniolariella D. Garcı́a, Stchigel & Guarro, gen. nov.
Etym.: derived from the original name of the type,
Coniolaria.
Ascomata globosa, ostiolata. Paraphysis numerosa. Asci cylindrici,
structura apicalis nula, stipitati. Ascosporae unicellulares, ellipsoideae vel citriformis, brunneae vel nigrae, cum sulco germinalis
longitudinale.
Conidiophora
ramosa;
cellulae
conidiogenae
integratae, sympodice producere; conidia solitaria vel in series
breves, ellipsoidea, cilindrica, ramoconidia obclavata.
Ascomata superficial, solitary or in small groups, globose,
ostiolate, glabrous, dark brown to black, 500–1500 mm diam,
surrounded by brown to dark brown, thick-walled smooth
hyphae, 2–5 mm diam. Peridium pseudoparenchymatous to
coriaceous, two-layered. Outer layer of textura intricata to
textura angularis, brown to dark brown. Inner layer formed
by several layers of thick walled, pale brown to brown, angular to sub-globose, 4–6 mm diam cells, of textura angularis
to textura epidermoidea. Paraphyses numerous, filiform, septate, hyaline, 135–200 1.5–2 mm. Asci 8-spored, cylindrical,
with rounded tip and without apical structures, non-amyloid, 100–130 11–16 mm, stipitate, stipe 14–20 mm long. Ascospores one-celled, obliquely uniseriate, broadly ellipsoidal
to citriform, with apiculate ends, at first hyaline, becoming
brown to black, thick-walled, smooth, 16–20 6–12 mm,
without gelatinous sheath, germ-slit longitudinal, straight
to slightly sinuous at one end. Conidial state growing on
the ascomata or independently. Conidiophores macronematous, branched, up to 200 mm long, 2–3 mm wide, pale olive
brown, smooth and septate. Conidiogenous cells integrated,
subhyaline to pale olive-brown, smooth, cylindrical, polyblastic, elongating sympodially during conidiogenesis, with
conspicuous conidia-bearing denticles, denticles plane to
slightly prominent, less than 1 mm long, with pigmented
scars, often apical branches secedes and functions as
conidia (ramoconidia). Ramoconidia pale olivaceous, smooth,
1286
D. Garcı́a et al.
Molecular phylogeny of Coniochaetales
1287
Fig 13 – Coniolariella gamsii. A. Conidiophores, conidiogenous cells, and conidia. B. Asci with ascospores.
C. Ascospores. Bars [ 10 mm.
thin-walled, one- or two-celled, obclavate, apiculate at the
base with pigmented seceded scar, apices with small, pigmented, plane denticles, giving rise to secondary conidia,
14–19(–21) 2–4 mm. Conidia sub-hyaline to pale olivaceous,
one-celled, cylindrical, rounded apices, with a distinct,
small, brown spot; apiculate at the base with pigmented
scar, 9–11 2–3 mm, solitary or in small chains on
ramoconidia.
Fig 12 – Coniolariella gamsii. A. Ascomata. B. Detail of the outer layer of the peridium. C. Detail of the inner layer of the
peridium. D. Asci with ascospores. E. Detail of the ascus. F-H. Ascospores (LM). I–K. Ascospores (SEM). L–N. Conidiophores,
conidiogenous cells, and conidia. O–Q. Detail of the formation of secondary conidia (ramoconidia). R–U. Conidiophores,
conidiogenous cells, and conidia (SEM). Bars: A [ 100 mm, B–R [ 10 mm.
1288
Acknowledgements
We are indebted to the curators of the Centraalbureau voor
Schimmelcultures (Utrecht, CBS) and Fungal Strain Collection,
Laboratoire Cryptogamie, Museum National d’Historie Naturalle (Paris, LCP) for providing strains, and to Nuria Pilas and
Felix Gilgado for their technical assistance. D. G. is grateful
for a fellowship grants from the Universitat Rovira i Virgili,
and D. L. H. for support from the Ramón y Cajal programme
of the Ministry of Science and Technology of Spain. This study
was supported by the Ministry of Science and Technology of
Spain, grant CGL 2004-00425/BOS.
references
Acero FJ, González V, Sánchez-Ballesteros J, Rubio V, Checa J,
Bills GF, Salazar O, Platas G, Peláez F, 2004. Molecular phylogenetic studies on the Diatrypaceae based on rDNA-ITS
sequences. Mycologia 96: 249–259.
von Arx JA, 1973. Ostiolate and nonostiolate pyrenomycetes.
Proceedings of the Koninklijke Netherlandse Akademie van Wetenschappen, Series C, Biological and Medical Sciences 76: 289–296.
von Arx JA, 1975. On Thielavia and some similar genera of Ascomycetes. Studies in Mycology 8: 1–29.
von Arx JA, Müller E, 1954. Die Gattungen der amerosporen Pyrenomyceten. Beiträge zur Kryptogamenflora der Schweiz 11 (1):
1–434.
Asgari B, Zare R, 2006. Two new Coniochaeta species from Iran.
Nova Hedwigia 82: 227–236.
Barr ME, 1990. Prodomus to nonlichenized pyrenomycetous
members of class Hymenoascomycetes. Mycotaxon 39: 43–184.
Barr ME, Cannon PF, 1994. Discussion 3. Calospheriales, Clavicipitales, Coryneliales, Diaporthales, Diatrypales, Halosphaeriales, Hypocreales, Meliolales, Ophiostomatales, Phyllachorales, Sordariales,
Trichosphaeriales, and Xylariales. In: Hawksworth DL (ed),
Ascomycete Systematics: Problems and Perspectives in the Nineties.
Plenum press, New York, pp. 371–378.
Barron GL, 1983. In: The Genera of Hyphomycetes from Soil, 4th edn.
Robert E. Krieger Publishing, Florida.
Cain RF, 1957. Synaptospora a new genus of amerosporous Ascohymeniales (Ascomycetes). Sydowia Beiheft 1: 4–8.
Cain RF, 1961. Studies of soil fungi. III. New species of Coniochaeta,
Chaetomidium, and Thielavia. Canadian Journal of Botany 39:
1231–1239.
Candoussau F, Rogers JD, 1990. Notes on Obolarina dryophila from
France. Mycotaxon 66: 345–349.
Cano J, Guarro J, Gené J, 2004. Molecular and morphological
identification of Colletotrichum species of clinical interest.
Journal of Clinical Microbiology 42: 2450–2454.
Cano J, Sagués M, Barrio E, Vidal P, Castañeda RF, Gené J, Guarro J,
2002a. Molecular taxonomy of Aphanoascus and description of
two new species from soil. Studies in Mycology 47: 153–164.
Cano J, Solé M, Pitarch LB, Guarro J, 2002b. Castanedomyces australiensis, gen. nov., sp. nov., a keratinophilic fungus from
Australian soil. Studies in Mycology 47: 165–172.
Checa J, Barrasa JM, Moreno G, Fort F, Guarro J, 1988. The genus
Coniochaeta (Sacc.) Cooke (Coniochaetaceae, Ascomycotina) in
Spain. Cryptogamie, Mycologie 9: 1–34.
Dettman JR, Harbinski FM, Taylor JW, 2001. Ascospore morphology is a poor predictor of the phylogenetic relationships of
Neurospora and Gelasinospora. Fungal Genetics and Biology 34:
49–61.
van Emden JH, 1973. Ephemeroascus gen. nov. (Eurotiales) from soil.
Transactions of the British Mycological Society 61: 599–601.
D. Garcı́a et al.
Eriksson OE, Baral H-O, Currah RS, Hansen K, Kurtzman CP,
Rambold G, Laessøe T (eds) (2004) Outline of the Ascomycetes–
2004. Myconet 10: 1–99. http://www.umu.se/myconet/
curr/current.html.
Eriksson OE, Hawksworth DL, 1993. Outline of the Ascomycetes.
Systema Ascomycetum 12: 51–257.
Eriksson OE, Hawksworth DL, 1998. Notes on ascomycete systematicsdNos 2256 2439. Systema Ascomycetum 16: 39–81.
Fournier J, Magni J-F, 2004. Pyrenomycetes from Southwestern France.
http://pyrenomycetes.free.fr/index.htm.
Fröhlich J, Hyde KD, 1994. New Oxydothis species associated with
palm leaf spot in north Queensland, Australia. Mycological
Research 98: 213–218.
Gams W, 2000. Phialophora and some similar morphologically little-differentiated anamorphs of divergent ascomycetes. Studies in Mycology 45: 187–199.
Gams W, Boekhout T, 1985. Pigment localization in dematiaceous
hyphomycetes and the segregation of Pseudogliomastix gen.
nov. from Acremonium. Proceedings of the Indian Academy of
Sciences (Plant Sciences) 94: 273–280.
Gams W, O’Donnell K, Schroers H-J, Christensen M, 1998. Generic
classification of some more hyphomycetes with solitary conidia
borne on phialides. Canadian Journal of Botany 76: 1570–1583.
Garcı́a D, Stchigel AM, Cano J, Guarro J, Hawksworth DL, 2004.
A synopsis and re-circumscription of Neurospora (syn. Gelasinospora)
based on ultrastructural and 28 S rDNA sequences data. Mycological
Research 108: 1119–1142.
Garcı́a D, Stchigel AM, Guarro J, 2003. A new species of Poroconiochaeta from Russian soils. Mycologia 95: 525–529.
Goh TK, Hyde KD, 1997. A revision of Dactylaria, with description
of D. tunicata sp. nov. from submerged wood in Australia.
Mycological Research 101: 1265–1272.
Guarro J, Gené J, Al-Bader SM, Abdullah SK, 1997. A new species
of Coniochaetidium from soil. Mycoscience 38: 123–125.
Haase G, Sonntag L, Melzer-Krick B, de Hoog GS, 1999. Phylogenetic inference by SSU-gene analysis of members of the Herpotrichiellaceae with special reference to human pathogenic
species. Studies in Mycology 43: 80–97.
Hawksworth DL, 1971. A revision of the genus Ascotricha Berk.
Mycological Papers 126: 1–28.
Hawksworth DL, 1978. A new species of Coniochaeta with an interesting conidial state. Norwegian Journal of Botany 25: 15–18.
Hawksworth DL, Yip HY, 1981. Coniochaeta angustispora from roots
in Australia, with a key to the species known in culture.
Australian Journal of Botany 29: 377–384.
de Hoog GS, 1977. Rhinocladiella and allied genera. Studies in
Mycology 15: 1–140.
de Hoog GS, 1985. Taxonomy of the Dactylaria complex, IV.
Dactylaria, Neta, Subulispora, and Scolecobasidium. Studies in
Mycology 26: 1–60.
Hsieh H, Ju Y, Rogers JD, 2005. Molecular phylogeny of Hypoxylon
and closely related genera. Mycologia 97: 844–865.
Hughes SJ, 1953. Conidiophores, conidia, and classification.
Canadian Journal of Botany 31: 577–659.
Huhndorf SM, Fernández FA, Candoussau F, 1999. Two new
species of Synaptospora. Sydowia 51: 176–182.
Huhndorf SM, Miller AN, Fernández FA, 2004. Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96: 368–387.
Hyde KD, Fröhlich J, Taylor JE, 1998. Fungi from palms. XXXVI.
Reflections on unitunicate ascomycetes with apiospores.
Sydowia 50: 21–80.
Ju J-M, Rogers JD, San Martı́n F, Granmo A, 1998. The genus
Biscogniauxia. Mycotaxon 39: 345–349.
Kendrick B (ed), 1971. Taxonomy of Fungi Imperfecti. University of
Toronto Press, Toronto.
Kendrick B, 1985. The Fifth Kingdom. Mycologue Publications,
Waterloo.
Molecular phylogeny of Coniochaetales
Kimura M, 1980. A simple method for estimating evolutionary
rate of base substitutions through comparative studies of
nucleotide sequences. Journal of Molecular Evolution 16: 11–120.
Kirk PM, Cannon PF, David JC, Stalpers JA, 2001 Ainsworth &
Bisby’s Dictionary of the Fungi, 9th edn. CABI Publishing,
Wallingford.
Kumar S, Tamura K, Jacobsen IB, Nei M, 2001. MEGA. Molecular
evolutionary genetic analysis v. 2.1. Analysis software.
Bioinformatics 17: 244–245.
Laessøe T, 1994. Index Ascomycetum 1. Xylariaceae. Systema
Ascomycetum 13: 43–112.
Laessøe T, Spooner BM, 1994. Rosellinia and Astrocystis (Xylariaceae): new species and generic concepts. Kew Bulletin 49: 1–70.
Lee S, Hanlin RT, 1999. Phylogenetic relationships of Chaetomium
and similar genera based on ribosomic DNA sequences.
Mycologia 91: 434–442.
van der Linde EJ, 1991. Coniochaeta cypraespora sp. nov. with
a Paecilomyces conidial state. Mycological Research 95: 510–512.
Mahoney DP, LaFavre JS, 1981. Coniochaeta extramundana, with
a synopsis of other Coniochaeta species. Mycologia 73: 931–952.
Malloch D, Cain RF, 1971. New cleisthothecial Sordariaceae and
a new family Coniochaetaceae. Canadian Journal of Botany 49:
869–880.
Miller AN, 2003. Multi-gene phylogenies indicate ascomal wall
morphology is a better predictor of phylogenetic relationships
than ascospore morphology in the Sordariales. In: Phylogenetic
Studies in the Lasiosphaeriaceae and the Key Genus, Lasiosphaeria.
University of Illinois and Field Museum, Chicago, pp. 81–124.
Petrini LE, Müller E, 1986. Haupt- und Nebenfruchtformen europäischer Hypoxylon- Arten (Xylariaceae, Sphaeriales) und verwandter Pilze. Mycologia Helvetica 1: 501–627.
Põldmaa K, Larsson E, Kõljalg U, 1999. Phylogenetic relationships
in Hypomyces and allied genera, with emphasis on species
growing on wood-decaying homobasidiomycetes. Canadian
Journal of Botany 77: 1756–1768.
Ramaley AW, 1997. Barrina, a new genus with polysporous asci.
Mycologia 89: 962–966.
Réblová M, 2002. Synaptospora olandica, a new species from
Sweden. Sydowia 54: 248–255.
Réblová M, Seifert KA, 2004. Cryptadelphia (Trichosphaeriales),
a new genus for holomorphs with Brachysporium anamorphs
and clarification of the taxonomic status of Wallrothiella.
Mycologia 96: 343–367.
Réblová M, Winka K, 2000. Phylogeny of Chaetosphaeria and its
anamorphs based on morphological and molecular data.
Mycologia 92: 939–954.
Rogers JD, 1994. Problem genera and family interfaces in the
Eupyrenomycetes. In: Hawksworth DL (ed), Ascomycete Systematics: Problems and Perspectives in the Nineties. Plenum Press,
New York, pp. 321–331.
Rogers JD, Ju Y-M, Adams MJ, 2002. Home of the Xylariaceae.
http://mycology.sinica.edu.tw.
Rogerson CT, Samuels GJ, 1993. Polyporicolous species of
Hypomyces. Mycologia 85: 231–272.
Romero AI, Carmarán CC, Lorenzo IE, 1999. A new species of
Coniochaeta with a key to the species known in Argentina.
Mycological Research 103: 689–695.
Saitou N, Nei M, 1987. The neighbour-joining method: a new
method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406–425.
Samuels GJ, Barr ME, 1997. Notes on and additions to the
Niessliaceae (Hypocreales). Canadian Journal of Botany 75:
2165–2176.
1289
Samuels GJ, Rogers JD, Nagasawa E, 1987. Studies in the
Amphisphaeriaceae (sensu lato). 1. Collodiscula japonica and its
anamorph Achantodochium collodisculae. Mycotaxon 28:
453–459.
Samuels GJ, Rossman AY, 1987. Studies in the Amphisphaeriaceae
(sensu lato) 2. Leiosphaerella cocoes and two new species of
Oxydothis on palms. Mycotaxon 28: 461–471.
Sánchez-Ballesteros J, 2001. Filogenia y caracterización molecular
de hongos ascomycetos de la familia Xylariaceae. PhD thesis.
Departamento de Biologı́a Molecular, Facultad de Ciencias,
Universidad Autónoma de Madrid, Madrid, Spain.
Sánchez-Ballesteros J, González V, Salazar O, Acero J, Portal MA,
Julián M, Rubio V, 2000. Phylogenetic study of Hypoxylon and
related genera based on ribosómico ITS sequences. Mycologia
92: 964–977.
Seigle-Murandi F, Guiraud P, Steiman R, Sage L, 1995. Coniolaria:
a new genus of AscomycetesdDescription of Coniolaria murandii
sp. nov. from soil of Monument Valley in Colorado (USA).
Cryptogamic Botany 5: 346–350.
Smith GJD, Liew ECY, Hyde KD, 2003. The Xylariales: a monophyletic order containing 7 families. Fungal Diversity 13: 175–208.
Solé M, Cano J, Pitarch LB, Stchigel AM, Guarro J, 2002. Molecular
phylogeny of Gymnoascus and related genera. Studies in Mycology 47: 141–152.
Spatafora JW, Mitchell TG, Vilgalys R, 1995. Analysis of genes
coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens. Journal of Clinical
Microbiology 33: 1322–1326.
Sugiyama M, Summerbell RC, Mikawa T, 2002. Molecular phylogeny of onygenalean fungi based on small subunit (SSU) and
large subunit (LSU) ribosomic DNA sequences. Studies in
Mycology 47: 5–23.
Suh SO, Blackwell M, 1999. Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaceae and Pseudoeurotiaceae.
Mycologia 91: 836–848.
Triebel D, Persoh D, Wollweber H, Stadler M, 2005. Phylogenetic
relationships among Daldinia, Entonaema, and Hypoxylon as
inferred from ITS nrDNA analyses of Xylariales. Nova Hedwigia
80: 25–43.
Udagawa S, Furuya K, 1979. Poroconiochaeta, a new genus of the
Coniochaetaceae. Transactions of the Mycological Society of Japan
20: 5–12.
Udagawa S, Horie Y, 1982. Two new species of terrestrial Ascomycetes
from Eastern Nepal. In: Otani Y (ed), Reports on the Cryptogamic
Study in Nepal. National Science Museum, Tokyo, pp. 97–104.
Udagawa S, Tsubouchi H, 1986. Coniochaetidium mirabile, a new
ascomycete isolated from salted food. Mycotaxon 27: 63–69.
Udagawa S, Ueda S, 1988. Calceomyces, a new genus of the Xylariaceae with shoe-shaped ascospores. Mycotaxon 32: 447–455.
Valldosera M, Guarro J, 1988. Some coprophilous ascomycetes
from Chile. Transactions of the British Mycological Society 90:
601–605.
Whalley AJS, 1996. The xylariaceous way of life. Mycological
Research 100: 897–922.
Weber E, 2002. The Lecythophora–Coniochaeta complex I. Morphological studies on Lecythophora species isolated from Picea
abies. Nova Hedwigia 74: 159–185.
Weber E, Görke C, Begerow D, 2002. The Lecythophora–Coniochaeta
complex II. Molecular studies based on sequences of the large
subunit of ribosomic DNA. Nova Hedwigia 74: 187–200.
Zhang N, Blackwell M, 2002. Molecular phylogeny of Melanospora
and similar pyrenomycetous fungi. Mycological Research 106:
148–155.