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Dipartimento di Chimica Bioorganicae Biofarmacia,
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State Key Laboratory of Natural and Biomimetic Drugs,
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NPC
2011
Vol. 6
No. 1
45 - 48
Natural Product Communications
Bioactive Isocoumarins from a Terrestrial
Streptomyces sp. ANK302
Dhafer Saber Zinada, Khaled A. Shaabana, Muna Ali Abdallaa , Md. Tofazzal Islamb,c,
Anja Schüfflerd and Hartmut Laatscha,*
a
Institute of Organic and Biomolecular Chemistry, University of Göttingen, Tammannstrasse 2,
D-37077 Göttingen, Germany
b
Department of Crop Sciences, Plant Pathology and Plant Protection,
Georg-August Universität Göttingen, Grisebachstraße 6, 3707 Göttingen, Germany
c
Current address: Department of Biotechnology, Bangabandhu Sheikh Mujibur Rahman Agricultural
University, Gazipur-1706, Bangladesh
d
Institute of Biotechnology and Drug Research, D-67663 Kaiserslautern, Germany
hlaatsc@gwdg.de
Received: August 5th, 2010; Accepted: October 26th, 2010
Four isocoumarins have been isolated from the terrestrial Streptomyces sp. ANK302, namely 6,8-dimethoxy-3-methylisocoumarin (1), 6,8dihydroxy-3-methylisocoumarin (2), 6,8-dihydroxy-7-methoxy-3-methylisocoumarin (3), and 6,7,8-trimethoxy-3-methylisocoumarin (4).
Compound 1 is a new naturally-occurring isocoumarin, and 2 was isolated as a new bacterial product. The structures 1-4 were deduced from
high resolution mass, 1D and 2D NMR spectra and by comparison with related compounds from the literature. Compound 2 showed a strong
zoosporicidal activity at a concentration of 5 µg/mL against a phytopathogenic oomycete, Plasmopara viticola, and 1 was active against
Candida albicans.
Keywords: terrestrial Streptomyces, isocoumarins, zoosporicide, oomycetes.
Isocoumarins are not rare in plants and microorganisms
and are forming an important class of compounds due to
their broad biological activities, such as antimicrobial,
antimalarial [1], antituberculous, cytotoxic, antifungal [2],
immunomodulatory, and anti-inflammatory properties [3].
Isocoumarins are useful intermediates in the synthesis of a
variety of natural products, including some isoquinoline
alkaloids [4].
In plants, the number of coumarins is approximately three
times higher than that of isocoumarins, but oppositely, in
microorganisms, the latter group occurs three times more
often [5-7].
During our investigation of the terrestrial Streptomyces sp.
ANK302, four isocoumarins (1-4) were isolated.
Compounds 2-4, including several related glycosides [8],
had been described previously, but NMR data were not
published. Interpretation of the HSQC and HMBC
correlations (Figure 1), the molecular weights and
corresponding formulas (by HRMS) unambiguously
confirmed their structures and led to full assignment of
their shift values. Compound 2 had been isolated
previously from statically grown cultures of the fungus
5
R1O
3
7
1
R2
OR3
1:
2:
3:
4:
CH3
O
O
R1 = CH3, R2 = H, R3 = CH3
R1 = R2 = R3 = H
R1 = H, R2 = OCH3, R3 = H
R1 = CH3, R2 = OCH3, R3 = CH3
Ceratocystis minor [9], the marine fungus Keissleriella sp.
YS4108, and other fungi [10], while 3 and 4 have been
isolated from an unidentified Streptomyces sp. [9]. 6,8Dimethoxy-3-methylisocoumarin (1) is a new natural
product.
6,8-Dimethoxy-3-methylisocoumarin (1) was obtained as
UV absorbing colorless solid of medium polarity, which
exhibited a red color reaction with anisaldehyde/H2SO4
spraying reagent. A molecular weight of 220 Daltons was
determined by EI MS, and the (+)-HRESI MS confirmed
the molecular formula as C12H12O4. The 1H NMR spectrum
of 1 displayed doublets (J = 2.3 Hz) of two m-coupled
aromatic protons at δ 6.41 and 6.29; a further 1H singlet
46 Natural Product Communications Vol. 6 (1) 2011
Zinad et al.
Experimental
5
O
3
H3C
1
7
CH3
5
HO
3
O
1
7
O
H3C
1
CH3
O
O
OH
O
2
Figure 1: Selected H,H COSY (↔) and HMBC (→) correlations of
isocoumarins 1 and 2.
appeared at δ 6.08. In the aliphatic region, two
methoxysinglets at δ 3.95 and 3.88 and a resonance of an
sp2-bound methyl singlet (δ 2.21) were visible.
A combination of 13C and HSQC NMR spectra revealed all
12 carbon resonances of 1, four at chemical shifts
indicative of oxygenated quaternary carbons in the
aromatic region (δ 165.2, 163.1, 159.4, and 155.3), two
quaternary carbons at δ 142.3, 102.7, and three methines at
δ 103.6, 99.3 and 98.0. Of the remaining resonances, two
could be attributed to methoxy groups at δ 56.2 and 55.6,
and a methyl signal appeared at δ 19.5.
Structure 1 was further confirmed by HMBC correlations
(Figure 1): H-7 (δ 6.41) exhibited a 3J correlation with
C-8a (δ 102.7) and CH-5 (δ 99.3) in the tetrasubstituted
aromatic ring (Figure 1). The methine doublet of H-5
exhibited 3J couplings with the quaternary carbon atom
C-8a and the methine carbon CH-7. H-5 (δ 6.29) displayed
no COSY correlation with H-4, but showed a 3J coupling
to CH-4 (δ 103.6) and vice versa, confirming a syn-periposition for both protons. The methyl group 3-CH3 showed
a 4J COSY correlation with H-4, in addition to its 2J and
3
J HMBC correlations with C-3 and C-4, respectively.
This resulted in structure 1.
Crude extracts of Streptomyces sp. ANK302 and isolated
compounds were tested for their effects on the motility
behavior of the zoospores of the grapevine downy mildew
pathogen, Plasmopara viticola [11]. The bioassay revealed
that both the crude extract (100 μg/mL) and compound 2
(5 μg/mL) inhibited motility of P. viticola zoospores in a
dose- and time-dependent manner. Zoospores became
paralyzed (100 %) and then immobilized (100%) within
60 min in the presence of compound 2 at the dose of
5 µg/mL. Compound 4 (25 μg/mL) inhibited the motility
of P. viticola zoospores in a dose- and time-dependent
manner as well. Zoospores became paralyzed (ca. 98 %)
and then immobilized (ca. 73%) within 60 min. This is the
first report on the motility inhibitory and zoosporicidal
effects of isocoumarins against the infecting propagules of
an important oomycete phytopathogen, which is
insensitive to most of the chemical fungicides [12].
Compound 1 also showed antifungal activity against
Candida albicans by causing an inhibition zone of 12 mm
at 40 μg/disk. The other compounds did not show activities
in our tests.
General: UV/vis spectra were recorded on a Varian Cary
3E UV/vis spectrometer. NMR spectra were measured on
Bruker AMX 300 (300.135 MHz), Varian Unity 300
(300.145 MHz) and Varian Inova 500 (499.876 MHz)
spectrometers. EIMS were recorded on a Finnigan MAT
95 (70 eV). HRMS were recorded by ESI MS on an Apex
IV 7 Tesla Fourier-Transform Ion Cyclotron Resonance
Mass Spectrometer (Bruker Daltonics, Billerica, MA,
USA). Flash chromatography was carried out on silica gel
(230-400 mesh). Thin layer chromatography (TLC) was
performed on Polygram SIL G/UV254 (Macherey-Nagel &
Co.). Rf values were measured on Polygram SIL G/UV254
(Macherey-Nagel & Co.) with CH2Cl2/5% MeOH. Size
exclusion chromatography was carried out on Sephadex
LH-20 (Lipophilic Sephadex, Amersham Biosciences Ltd.;
purchased from Sigma-Aldrich Chemie, Steinheim,
Germany). XAD-16 resin was obtained from Rohm and
Haas, France.
Isolation and taxonomy of Streptomyces sp. ANK302:
The Streptomyces strain ANK302 has been derived from a
soil sample and was isolated on YMG agar at room
temperature (YMG agar: 2 g/L yeast extract, 5 g/L malt
extract, 5 g/L glucose, 15 g/L agar, 30 mg/L
cycloheximide). Its almost complete 16S rRNA gene
sequence (GenBank Accession Nr. HM215581) shows
high similarities to Streptomyces rectiverticillatus strain
NRRL B-12369 (GenBank Accession Nr. DQ026657) and
S. aureoversilis strain NBRC 13021 (GenBank Accession
Nr. AB184855). The strain is deposited in the culture
collection at the Institute of Organic and Biomolecular
Chemistry, Göttingen, Germany.
Fermentation: The terrestrial isolate Streptomyces sp.
ANK302 was inoculated on M2 agar [13] from a soil
storage culture and incubated for 96 h at 28°C. Three wellgrown Petri plates were used to inoculate 100 of 1 L
Erlenmeyer flasks, each containing 250 mL of M2
medium, which were incubated as shake-cultures (95 rpm)
at 28°C for 7 days. The resulting gray culture broth was
mixed with ca. 1 kg diatomaceous earth (Celite) and
pressed through a pressure filter affording the aqueous
filtrate and the mycelial residue. The aqueous fraction was
extracted with Amberlite XAD-16 resin and eluted using
MeOH. The mycelium was extracted (3×) with EtOAc
followed by acetone (1×). The acetone was evaporated and
the aqueous residue extracted with EtOAc. Both organic
phases were combined and evaporated to dryness, yielding
4.0 g of a brown extract, which was dissolved in methanol
and extracted with cyclohexane to remove fats. Flash
chromatography on silica gel with a MeOH/CH2Cl2
gradient (column 3 × 60 cm, 0 to 20 % MeOH) afforded 3
fractions. Fractions 1 and 2 were further purified on
Sephadex LH-20 (MeOH) to deliver compounds 2 (12 mg)
and 3 (6 mg), respectively, while fraction 3 was separated
on Sephadex LH-20 (MeOH), followed by silica gel
(cyclohexane/EtOAc gradient 0 to 100 % EtOAc), and
Zoosporicidal isocoumarins
again on Sephadex LH-20 (MeOH) to afford compounds 1
(5 mg) and 4 (10 mg).
6,8-Dimethoxy-3-methylisocoumarin (1)
Colorless solid.
Rf : 0.53 ( CH2Cl2/5% MeOH)
UV λmax (MeOH) nm (log ε): 324 (3.80), 277 (3.91);
λmax (MeOH/HCl) nm (log ε): 325 (3.72), 277 (3.84);
λmax (MeOH/NaOH) nm (log ε): 322 (3.75), 278 (3.84).
1
H NMR (CDCl3, 300 MHz): δ 6.41 (1 H, d, J = 2.3 Hz,
H-7), 6.29 (1 H, J = 2.3 Hz, H-5), 6.08 (1H, s, H-4), 3.95
(3H, s, 8-OCH3), 3.88 (3 H, s, 6-OCH3), 2.21 (3 H, s,
3-CH3).
13
C NMR (CDCl3, 125 MHz): δ 165.2 (Cq-6), 163.1 (Cq-8),
159.4 (CO-1), 155.3 (Cq-3), 142.3 (Cq-4a), 103.6 (CH-4),
102.7 (Cq-8a), 99.3 (CH-5), 98.0 (CH-7), 56.2 (8-OCH3),
55.6 (6-OCH3), 19.5 (3-CH3).
EIMS (70 eV): m/z (%) 220 [M]+. (100), 191 (66), 149
(64), 43 (34); ESI HRMS m/z: [M+H]+ calcd for C12H13O4:
221.080835; found: 221.0809070; [M+Na]+ calcd for
C12H12O4Na: 243.06278; found: 243.06287.
6,8-Dihydroxy-3-methylisocoumarin (2)
Colorless solid.
Rf : 0.29 (CH2Cl2/5% MeOH)
1
H NMR (DMSO-d6, 300 MHz): δ 10.95 (1H, brs, 8-OH),
6.43 (1 H, s, H-4), 6.31 (1 H, d, J = 2.1 Hz, H-5), 6.29 (1H,
d, J = 2.1 Hz, H-7), 2.19 (3 H, s, 3-CH3).
13
C NMR (DMSO-d6, 125 MHz): δ 165.6 (CO-1), 165.2
(Cq-6), 162.5 (Cq-8), 153.8 (Cq-3), 139.4 (Cq-4a), 104.0
(CH-4), 102.3 (CH-5), 101.2 (CH-7), 97.0 (Cq-8a), 18.7
(CH3).
EIMS (70 eV): m/z (%) 192 [M]+. (100), 177 (50), 150
(16), 121 (20); ESI HRMS m/z: [M+H]+ calcd for
C10H9O4: 193.04953; found: 193.04950; [M+Na]+ calcd for
C10H8O4Na: 215.03148; found: 215.03146.
Natural Product Communications Vol. 6 (1) 2011 47
6,8-Dihydroxy-7-methoxy-3-methylisocoumarin (3)
Colorless solid.
Rf : 0.50 (CH2Cl2/5% MeOH).
1
H NMR (CD3OD, 300 MHz): δ 6.38 (1 H, s, H-5), 6.30
(1H, s, H-4), 3.84 (3 H, s, 7-OCH3), 2.19 (3 H, s, 3-CH3).
13
C NMR (CD3OD, 125 MHz): δ 168.2 (CO-1), 161.0
(Cq-6), 156.2 (Cq-8), 154.6 (Cq-3), 136.2 (Cq-4a), 135.5
(Cq-7), 105.3 (CH-4), 104.0 (CH-5), 100.0 (Cq-8a), 60.9
(7-OCH3), 19.1 (3-CH3).
EIMS (70 eV): m/z (%) 222 [M]+. (100), 207 (90), 179
(60), 101 (38), 59 (44), 43 (34); ESI HRMS m/z: [M+H]+
calcd for C11H11O5: 223.060105; found: 223.0602940;
[M+Na]+ calcd for C11H10O5Na: 245.042045; found:
245.0422940.
6,7,8-Trimethoxy-3-methylisocoumarin (4)
Colorless solid.
Rf : 0.55 (CH2Cl2/5% MeOH).
1
H NMR (CD3OD, 300 MHz): δ 6.75 (1 H, s, H-5), 6.29 (1
H, s, H-4), 3.93 (3 H, s, 6-OCH3), 3.88 (3 H, s, 8-OCH3),
3.82 (3 H, s, 7-OCH3), 2.20 (3 H, s, 3-CH3).
13
C NMR (CD3OD, 125 MHz): δ 161.6 (CO-1), 160.9
(Cq-6), 156.3 (Cq-8), 155.4 (Cq-3), 143.4 (Cq-7), 138.2
(Cq-4a), 107.7 (Cq-8a), 104.6 (CH-4), 104.0 (CH-5), 62.3
(8-OCH3), 61.6 (7-OCH3), 56.8 (6-OCH3), 19.3 (CH3-9).
EIMS (70 eV): m/z (%) 250 [M]+. (56), 235 (100), 207
(40), 43 (36); ESI HRMS m/z: [M+H]+ calcd for C13H15O5:
251.09140; found: 251.09154; [M+Na]+ calcd for
C13H14O5Na: 273.07334; found: 273.07350.
Acknowledgment - We thank Dr H. Frauendorf and R.
Machinek for the mass and NMR spectra, F. Lissy and A.
Kohl for the technical assistance, the German Academic
Exchange Service (DAAD) for the financial support of
DSZ and MAA by PhD grants and the Alexander von
Humboldt Foundation for a fellowship to MTI.
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Review/Account
Anthocyanins as Antimicrobial Agents of Natural Plant Origin
Agnieszka Cisowska, Dorota Wojnicz and Andrzej B. Hendrich
149
Natural Product Communications
2011
Volume 6, Number 1
Contents
Original Paper
Page
A New Eudesmane Sesquiterpene from Pluchea arguta
Nikhat Saba, Rasheeda Khatoon, Viqar Uddin Ahmad and Saleha Suleman Khan
1
Bioactive Diterpenes from Clerodendrum kaichianum
Mingfeng Xu, Lianqing Shen, Kuiwu Wang, Qizhen Du and Nan Wang
3
Multi-stage Mass Spectrometric Analysis of Saponins in Glycyrrhiza radix
Ken Tanaka, Kosuke Hayashi, Abrar Fahad and Masanori Arita
7
5–Methoxyaristololactam I, the First Natural 5–Substituted Aristololactam from Asarum ichangense
Bai–Bo Xie, Ming–Ying Shang, Kuo–Hsiung Lee, Xuan Wang, Katsuko Komatsu and Shao–Qing Cai
11
Flavonoid Aglycones from the Leaf and Stem Exudates of Some Geraniaceae Species
Eckhard Wollenweber, Marion Dörr and Matthias Christ
15
Qualitative and Quantitative Analysis of the Major Bioactive Phenolic Compounds of Glechoma longituba
by LC-Coupled with PAD and ESI-MS Detection
Shu-mao Ni, Da-wei Qian, Jin-ao Duan, Nian-yun Yang and Jian-ming Guo
17
n
Phenolic Compounds of Mountain Tea from the Balkans: LC/DAD/ESI/MS Profile and Content
Jasmina Petreska, Gjose Stefkov, Svetlana Kulevanova, Kalina Alipieva, Vassya Bankova and Marina Stefova
21
Facile Synthesis of Chrysin-derivatives with Promising Activities as Aromatase Inhibitors
Hamdoon A. Mohammed, Lalla A. Ba, Torsten Burkholz, Elena Schumann, Britta Diesel, Josef Zapp,
Alexandra K. Kiemer, Christina Ries, Rolf W. Hartmann, Mohammed Hosny and Claus Jacob
31
Anthocyanins from Fuchsia Flowers
Monica Jordheim, Irene Skaar, Helene Lunder and Øyvind M. Andersen
35
Oxyresveratrol Protects Against DNA Damage Induced by Photosensitized Riboflavin
Manussanunt Chatsumpun, Taksina Chuanasa, Boonchoo Sritularak and Kittisak Likhitwitayawuid
41
Bioactive Isocoumarins from a Terrestrial Streptomyces sp. ANK302
Dhafer Saber Zinad, Khaled A. Shaaban, Muna Ali Abdalla, Md. Tofazzal Islam, Anja Schüffler and Hartmut Laatsch
45
Aromatic Compounds from the Liverwort Conocephalum japonicum
Na Liu, Dong-Xiao Guo, Yan-Yan Wang, Li-Ning Wang, Mei Ji and Hong-Xiang Lou
49
New Stress Metabolite from Bulbophyllum kwangtungense
Jianbo Chen, Huifang Zhang, Li Chen and Bin Wu
53
In vitro Antioxidant Activities of Maillard Reaction Products Produced in the Steaming Process of
Polygonum multiflorum Root
Zhenli Liu, Yuanyan Liu, Zhimao Chao, Zhiqian Song, Chun Wang and Aiping Lu
55
Targets of Red Grapes: Oxidative Damage of DNA and Leukaemia Cells
Jaouad Anter, Noriluz de Abreu-Abreu, Zahira Fernández-Bedmar, Myriam Villatoro-Pulido, Ángeles Alonso-Moraga
and Andrés Muñoz-Serrano
59
Extraction and Identification of Isothiocyanates from Broccolini Seeds
Bochao Zhang, Xiaoqin Wang, Yanjing Yang and Xuewu Zhang
65
Authentication of Chinese Crude Drug Gecko by DNA Barcoding
Hai-Feng Gu,Yun Xia, Rui Peng, Bang-Hui Mo, Li Li and Xiao-Mao Zeng
67
Comparative Biochemical Characterization of 5'-Phosphodiesterase and Phosphomonoesterase from
Barley Malt Sprouts
Suncica Beluhan and Vladimir Maric
73
Traditional Medicine in Syria: Folk Medicine in Aleppo Governorate
Amal Alachkar, Ahmad Jaddouh, Muhammad Salem Elsheikh, Anna Rita Bilia and Franco Francesco Vincieri
79
Essential Oil Composition of Vismia macrophylla Leaves (Guttiferae)
Janne Rojas, Alexis Buitrago, Luis Rojas and Antonio Morales
85
Continued Overleaf