Mycol. Res. 106 (5) : 541–548 (May 2002).
# The British Mycological Society
541
DOI : 10.1017}S0953756202006019 Printed in the United Kingdom.
Phylogenetic relationships among smut fungi parasitizing
dicotyledons based on ITS sequence analysis
Teresa ALMARAZ1, Christophe ROUX2*, Stephan MAUMONT3 and Guy DURRIEU4
" Real JardıU n BotaU nico (CSIC ), Plaza de Murillo 2, 28014 Madrid, Spain.
# Equipe de Mycologie VeU geU tale, UMR CNRS 5546, PoW le de biotechnologie veU geU tale, chemin de Borde Rouge, BP 17, 31326,
Castanet-Tolosan, France.
$ Laboratoire d’Ecologie Terrestre, UMR CNRS 5552, UniversiteU Paul Sabatier, 118 route de Narbonne, bat. 4R3, 31062
Toulouse Cedex 4, France.
% Chemin Flou de Riou, 31000 Pouvourville, Toulouse, France.
E-mail : roux!smcv.ups-tlse.fr
Received 8 October 1999 ; accepted 30 April 2002.
The phylogenetic relationships of several smut fungi parasitic on dicotyledons were analysed. Parsimony analysis
was performed based on the sequences of the ITS regions of the rDNA genes. Three genera were considered :
Microbotryum, Sphacelotheca and Ustilago. The cladogram showed a dichotomy : the species of Microbotryum and
Ustilago parasitic on dicotyledons (dicot Ustilago) were found to be divided into two independent taxa among the
Microbotryaceae. A divergent mechanism of evolution of the species of each of these two clades with their respective
hosts could be involved in this dichotomy. According to our results, Microbotryum appears monophyletic and
restricted to the anthericolous smuts on Caryophyllaceae. However, no morphological characters have yet been found
to support this distinction, and we refute the denomination Bauhinus as defined by Moore to describe the group of
‘ dicot Ustilago ’ as it leads to controversial determinations. Sphacelotheca belongs to Microbotryales, but could not be
synonymised with Microbotryum as S. polygoni-persicariae is in an independent clade. Lastly, U. duriaeana is
independent of the ‘ dicot Ustilago ’ clade ; the position of this species among Microbotryales is still uncertain.
INTRODUCTION
Many studies have tried to clarify the systematic and
taxonomic position of smuts parasitic on dicotyledons
in the Basidiomycota. Biochemical (Prillinger et al.
1991), ultrastructural (Bauer, Oberwinkler & Va! nky
1997) and molecular approaches (Blanz & Gottschalk
1984, Swann & Taylor 1995, Begerow, Bauer &
Oberwinkler 1997, Roux, Almaraz & Durrieu 1998)
have established that the smut fungi, formerly grouped
in the Ustilaginales, are polyphyletic and should be split
into different groups at different taxonomic levels. As
discussed by Begerow et al. (1997), three lineages are
considered in Basidiomycetes : Hymenomycetes, Ustilaginomycetes, and Urediniomycetes. This last lineage is
thought to include Uredinales and Microbotryales
(Bauer et al. 1997), or Microbotryomycetidae (Swann,
Frieders & McLaughlin 1999).
One of the taxa excluded from Ustilaginales and
placed in the Microbotryales, the Microbotryaceae
* Corresponding author.
(Moore 1996), includes smuts on dicotyledons. However, the delimitation of this family and its genera is still
uncertain. Different authors have considered whether
the species belong to Microbotryum and whether to add
genera other than Microbotryum to Microbotryaceae.
Some have proposed the inclusion of all Ustilago
species parasitic on dicotyledons together in a single
genus, Microbotryum (Prillinger et al. 1990, 1991,
Denchev 1994, Va! nky 1998a, Begerow et al. 1997,
Bauer et al. 1997), while Moore (1992, 1996) and
Denchev (1997) proposed the separation of these species
into two genera : species infecting Caryophyllaceae
(genus Microbotryum) and species parasitic on dicotyledons other than Caryophyllaceae (genus Bauhinus).
Bauer & Oberwinkler (1997) pointed out that up till
now no morphological characters clearly support this
distinction. To avoid ambiguities, and before making
any firm statements, below we will call ‘ dicot Ustilago ’
the species of Ustilago parasitic on non-caryophyllaceous dicotyledons.
Lastly, based on ultrastructural markers, Bauer et al.
(1997) included Sphacelotheca in Microbotryales, but
Delimitation of Microbotryum
542
Table 1. List of the fungi used in this study.
Microbotrym dianthorum
M. dianthorum
M. lychnidis-dioicae
M. violaceum
M. violaceum
M. silenes-inflatae
M. violaceo-verrucosum
M. violaceum
Sphacelotheca
polygoni-serrulati
Ustilago cordae
U. duriaeana
U. duriaeana
U. kuehneana
U. pinguiculae
U. scabiosae
U. scolymi
U. scorzonerae
U. vinosa
Host (family)
Spore morphology}
sorus location
Location
(date collected)
Dianthus hyssopifolius
(Caryophyllaceae)
Dianthuscarthusianorum
(Caryophyllaceae)
Silene latifolia
(Caryophyllaceae)
Saponaria ocymoides
(Caryophyllaceae)
Saponaria officinalis
(Caryophyllaceae)
Silene inflata
(Caryophyllaceae)
Silene mellifera
(Caryophyllaceae)
Silene ciliata
(Caryophyllaceae)
Polygonum serrulatum
(Polygonaceae)
Polygonum spp.
(Polygonaceae)
Cerastium spp.
(Caryophyllaceae)
Arenaria spp.
(Caryophyllaceae)
Rumex acetosella
(Polygonaceae)
Pinguicula spp.
(Lentibulariaceae)
Knautia dipsacifolia
(Dipsacaceae)
Scolymus hispanicus
(Asteraceae)
Scorzonera spp.
(Asteraceae)
Oxyria digyna
(Polygonaceae)
Reticulated}
anthers
Reticulated}
anthers
Reticulated}
anthers
Reticulated}
anthers
Reticulated}
anthers
Reticulated}
anthers
Echinulated}
anthers
Reticulated}
anthers
Reticulated}
ovaries
Reticulated}
flowers
Reticulated}
ovaries
Reticulated}
ovaries
Reticulated}flowers,
stems, leaves
Reticulated}
anthers
Reticulated}
anthers
Reticulated}
inflorescence
Reticulated}
inflorescence
Reticulated}
flowers
SP : Huesca
(VIII-95)
SP : Le! rida
(VI-96)
SP : Cuenca
(V-95)
SP : Burgos
(4-VI-1996)
FRA : Pyre! ne! es-Or.
(VII-96)
its relationships with the other members of this order is
not well established.
Most of the works on the molecular phylogeny of
smuts have treated the question at the suprageneric
level by using small and large subunits of the rDNA
genes (Swann & Taylor 1995, Begerow et al. 1997). Our
purpose was to investigate the limits of Microbotryum
and Microbotryaceae by analysing the ITS (Internal
Trancribed Spacer) regions of the rDNA genes. The
ITS regions are known to be useful for the analysis of
closely related taxa of fungi (Bruns, White & Taylor
1991). These sequences are rather constant inside a
species and are highly variable between species, leading
to a sufficient number of informative sites to define
phylogenetic relationships of genera. The utility of the
ITS in studying the phylogeny of smut fungi has been
reported previously (Roux et al. 1998). In order to
compare the molecular data with morphological characters used in the recent classifications of smuts, the
species included in our analysis were chosen according
to family host range, sorus position, and spore
morphology. A parsimony analysis was performed on
the ITS sequences of these species.
SP : Albacete
(VI-96)
SP : Palencia
(VII-95)
SP : Albacete
(VI-96)
SP : Albacete
(VI-96)
SP : A; vila
(VI-96)
SP : Le! rida
(VII-96)
SP : Guadalajara
(I-97)
Collection
GenBank
accession no.
MA-Fungi 34534
(TAl281)
MA-Fungi 35419
(TAL 367)
MA-Fungi 33572
(TAl171)
MA-Fungi 37708
(TAl321)
CR5±3, 96
AF038834
AF045872
ex VKM J2974
AF045875
MA-Fungi 37728
(TAl329)
MA-Fungi 33613
(TAl238)
ex VKM Y2691
AF045874
AF038835
ex VKM J2967
AF045878
MA-Fungi 37798
(TAl326)
MA-Fungi 37799
(TAl328)
MA-Fungi 37803
(TAl337)
ex CBS 184±42
AF287152
AF045881
CR3±9, 96
AF045880
MA-Fungi 37554
(TAl401)
ex CBS 365±33
AF038830
ex VKM J973
AF045876
Not submitted
AF045873
AF038832
AF038833
Not submitted
AF045879
AF045877
MATERIALS AND METHODS
Fungal isolates and sequences
The samples used in our assays, their host and
geographic origin, some of their morphological characters and the GenBank accession numbers are listed in
Table 1.
DNA extraction, PCR amplification and sequencing
A sample of 10 mg of yeast cells or teliospores was
taken for each species considered in this analysis. The
samples were ground in sand with 1 ml of extraction
buffer (0±2 Tris–HCl pH 8, 0±02 EDTA, 1±4
NaCl, 2 % CTAB, 0±2 % β mercaptoethanol) (Gardes &
Bruns 1993) and then centrifuged for 10 min at 5000 g.
Proteinase K (20 µg was added to the supernatant and
left for 5 min at 62 °C. After centrifugation for 10 min
at 5000 g, 1 ml of phenol}chloroform was gently mixed
with the supernatant. Proteins were pelleted by centrifugation for 15 min at 5000 g. The supernatant was
gently mixed with half a volume of chloroform and
centrifuged for 15 min at low speed. The supernatant
T. Almaraz and others
543
Puccinia caricina
Puccinia consimilis
Ustilago duriaeana
strain 328
Ustilago duriaeana
strain 326
Sphacelotheca polygoni persicariae
Ustilago scabiosae
Ustilago vinosae
Ustilago kuehneana
Ustilago cordae
Ustilago pinguiculae
Ustilago scorzonerae
Ustilago scolymi
Microbotryum violaceum
Microbotryum lychnidis-dioicae
Microbotryum silenes-inflatae
Microbotryum violaceum*
Microbotryum violaceum*
Microbotryum violaceo-verrucosum
Microbotryum dianthorum
Microbotryum dianthorum
Fig. 1. Cladogram obtained with 20 aligned ITS1-5±8S-ITS2 sequences of different species of smut fungi. The ITS
sequences of Puccinia caricina and P. consimilis were added as outgroup. One most parsimonious tree, resulting from 1000
bootstrap replicates on 325 sites (137 informative), and 388 steps were required for maximum parsimony. Microbotryum
violaceum* was on Saponaria officinalis. Values below branches correspond to the number of changes per branch (nc,
value non-calculated in case of trichotomy). Numbers above branches correspond to bootstrap values. Tree length ¯ 912,
consistency index (CI) ¯ 0±787, retention index (RI) ¯ 0±764.
was then mixed with 0±7 vol. of isopropanol. DNA was
pelleted by centrifugation (for 15 min, 5000 g) and
washed twice with 70 % ethanol. The air-dried pellet
was resuspended in 100 µl of TE buffer (10 m Tris–HCl
pH 8 and 1 m EDTA). The quality and quantity of
DNA were checked by spectrophotometry at 260, 280
and 310 nm.
The ITS1 and ITS4 primers used in PCR to amplify
the ITS sequence were described by Gardes & Bruns
(1993). The amplifications used 25 µl DNA template
solution in 50 µl of reaction mixture. The final solution
contained 25 µ each of dATP, dCTP, dGTP and
dTTP (Euromedex, Belgium), 0±5 µ of each primer and
1 unit of pfu-polymerase (Appligen-Oncor, France).
The cycling conditions consisted of an initial denaturation step at 94 °C for 5 min, followed by 30 cycles
of 1 min at 94 °, 1 min at 52 °, and 2 min at 72 °. The
amplified DNA was visualised by electrophoresis on
1±5 % agarose gels. The PCR product (680 to 700 bp,
except for U. duriaeana 550 bp) was purified using
the QIAquickTM Kit (QIAGEN, France) according to
the manufacturer’s protocol. The DNA was sequenced
directly using the ABI PRISMTM Dye terminator
Cycle Sequencing Kit (Perkin Elmer, USA) and an
automated sequencer (ABI 373, Perkin Elmer, USA).
Sequences alignment
The sequences ITS1-5±8S-ITS2 were analysed on a
UNIX station using the software SeaView for alignment
procedures (Galtier, Gouy & Gautier 1996). This
software uses the ClustalW algorithm (Thompson,
Delimitation of Microbotryum
544
Sphacelotheca polygonipersicariae
Microbotryum silenes-inflatae
Microbotryum lychnidisdioicae
Microbotryum violaceum
boostrap analysis. The following settings were used :
heuristic, 1000 replicates with a 50 % majority rule. The
numbers of changes per branch were obtained using
MacClade v. 3±03. The DNA sequence alignment used
in these analyses and a tree file for Figs 1–2 have been
deposited in TreeBASE under accession no. SN934.
Microbotryum violaceum*
Microbotryum violaceum*
Microbotryum violaceoverrucosum
Microbotryum dianthorum
Microbotryum dianthorum
Ustilago scabiosae
Ustilago kuehneana
Ustilago vinosae
Ustilago scorzonerae
Ustilago scolymi
Ustilago cordae
Ustilago pinguiculae
Fig. 2. Cladogram obtained with 16 aligned ITS1-5±8S-ITS2
sequences of different species of Microbotryales (outgroup :
Sphacelotheca polygoni-serrulati). One most parsimonious
tree, resulting from 1000 bootstrap replicates on 448 sites (62
informative), and 174 steps were required for maximum
parsimony. Microbotryum violaceum* was collected on Saponaria officinalis ; M. violaceum was species collected on Silene
ciliata. Values below branches correspond to the number of
changes per branch (nc, value non-calculated in case of
trichotomy). Numbers above branches correspond to bootstrap values. Tree length ¯ 442, consistency index (CI) ¯
0±785, retention index (RI) ¯ 0±769.
Higgins & Gibson 1994) and allows to align partial
regions of the ITS sequences with different parameters
of alignment. This procedure is particularly interesting
to align alternative variable and conserved regions like
ITS1-5±8S-ITS2 sequences. Minor adjustments of the
alignments were made manually with the Seaview
Software.
Phylogenetic inferences
Maximum parsimony analysis was first performed on
Phylojwin software (Galtier et al. 1996) using the
DNApars algorithm from PHYLIP (Felsenstein 1985).
Bootstrap analyses were made of 1000 replicates, and
the tree was built with the consensus option of
Phylojwin. We used the ITS1-5±8S-ITS2 sequences of
Puccinia consimilis and Puccinia caricina to root the
tree (GenBank accession nos U88215 and U88234
respectively). Further Cladistic analysis was made using
the PAUP 3±1.1 program (Swofford 1993) with the
branch and bound method. Confidence in specific
clades of the resulting topologies was estimated by
RESULTS
The general phylogeny of the species analysed is given
in Fig. 1. One most parsimonious tree was obtained,
and the robustness of the major clades was assessed by
high bootstrap values. No differences occurred in the
topology of the tree when phylogenetic inferences were
performed with different subsets of species (not shown).
Five lineages were obtained with the species analysed.
The species infecting Caryophyllaceae (M. silenesinflatae, M. lychnidis-dioicae, M. violaceo-verrucosum,
M. dianthorum, M. violaceum) were well characterized
in a single clade, although divided into two groups.
Except for U. duriaeana, the species of ‘ dicot Ustilago ’
were in a single lineage, separated from the Microbotryum species, although the clade of U. scabiosae is
weakly supported. This dichotomy was observed
whatever the set of species used for intermediate
analyses. In the set of species presented in the strict
consensus tree (Fig. 1), no clear distinction occurred
among the species of ‘ dicot Ustilago ’, and they were
presented as an undefined clade. Sphacelotheca polygoni-persicariae was found to be separated from the
sister groups Microbotryum and ‘ dicot Ustilago ’.
However, the ITS sequence of Sphacelotheca shows
higher similarity with Microbotryum and ‘ dicot Ustilago ’ species than with the species of the upper clades
(Table 2). As indicated by the bootstrap values, these
three lineages (Microbotryum, ‘ dicot Ustilago ’, and
Sphacelotheca) are distinct but closer to each other than
to the upper clades. The position of Ustilago duriaeana
is intermediate between the outgroup and the three
previously discussed lineages. To avoid a sampling
error, two isolates of U. duriaeana collected on
Cerastium sp. and Arenaria sp. from two different
stations were used, and shared slightly divergent ITS
sequences.
In Fig. 1, the addition of divergent ITS sequences
(Puccinia sp.) led us to choose sites unambiguously
aligned to enable the phylogenetic inferences to be
determined. As the ITS sequences of the Microbotryum
and ‘ dicot Ustilago ’ species were more homologous
(see Table 2), the phylogenetic relationships of these
species were defined in a separate analysis to avoid any
bias simply due the choice of the sites. One most
parsimonious tree, rooted with S. polygoni-persicariae,
is shown in Fig. 2.
In this tree, sublineages can be separated within
Microbotryum. A group containing M. violaceum (on
Silene ciliata), M. silenes-inflatae, and M. lychnidisdioicae can be distinguished from M. dianthorum and
M. violaceo-verrucosum. An additional lineage is formed
T. Almaraz and others
Table 2. Homology of the ITS1ITS2 sequences (without 5±8S region) for some of the species analysed (in percentage).
M. silenes-inflatae
M. silenes-inflatae
M. violaceum**
M. violaceum*
M. violaceo-verrucosum
U. vinosae
U. cordae
U. scolymi
U. scorzonerae
Sp. polygoni-serrulati
U. duriaeana
P. caricina
M. violaceum**
M. violaceum*
91
92
89
M. violaceoverrucosum
87
86
90
U. vinosae
U. cordae
U. scolymi
U. scorzonerae
74
76
73
74
79
77
81
77
81
74
69
76
73
79
80
79
77
82
77
78
81
85
Sp. polygoniserrulati
68
65
66
65
73
73
70
68
U. duriaeana
P. caricina
28
27
27
28
30
30
29
28
44
19
20
20
19
24
27
24
25
33
32
The values were calculated by SEAVIEW using the pairwise alignments of the ClustalW algorithm.
M., Microbotryum ; U., Ustilago ; Sp., Sphacelotheca ; P., Puccinia.
** On Silene ciliata ; * on Saponaria officinalis.
545
Delimitation of Microbotryum
by two strains of M. violaceum. The sequences of these
two isolates of M. violaceum, collected on Saponaria
ocymoides and S. officinalis from different geographic
regions (Table 1), differ significantly from the ITS of
the isolate from Silene ciliata.
In Fig. 2, the ‘ dicot Ustilago ’ species tested in our
analysis are in a different lineage than the Microbotryum
group (see also Fig. 1). These species always grouped
together regardless which outgroup was used for the
analysis (not shown). The relationships among ‘ dicot
Ustilago ’ species is less clear than in the Microbotryum
taxon. As for Microbotryum species, different groups
appear : U. kuehneana and U. vinosae, U. cordae and
U. pinguiculae, U. scorzonerae and U. scolymi. Although
this last group is formed by species parasitic on
Asteraceae, no strict relation according to the host
plant family was observed as U. cordae, parasitic on
Polygonaceae, is not grouped with U. kuehneana and
U. vinosae, but with U. pinguiculae, parasitic on Lentibulariaceae.
DISCUSSION
As defined by Moore (1996), the Microbotryaceae
forms a natural group. In the present study, we
investigated the phylogenetic relationships of some
members of this family, and their relationships with
species with an uncertain position. We used the ITS
sequences to compare these closely related species and
to define the delimitation of each genus.
Phylogenetic relationships and taxonomical
implications among Urediniomycetes
Comparison of the 18S (Swann & Taylor 1993, Swann
& Taylor 1995), 28S (Begerow et al. 1997) and ITS15±8S-ITS2 rDNA sequences (Roux et al. 1998) leads to
the conclusion that the Microbotryales are related to
the Uredinales, and grouped in the Urediniomycetes
(Swann & Taylor 1995). Our results showed that
Sphacelotheca polygoni-persicariae and Ustilago duriaeana were intermediate between Uredinales and the
other species analyzed.
Parsimony analysis of the ITS region of Sphacelotheca polygoni-persicariae showed that this species was
distinct from the clades Microbotryum and ‘ dicot
Ustilago ’ (Microbotryaceae), although the homology of
the sequences indicated that it is related to them. This
analysis supports the position of the genus Sphacelotheca in Microbotryales, as proposed by Prillinger et al.
(1993) and Bauer et al. (1997) based on biochemical
and ultrastructural data. In a comparison of the 5S
sequences, Blanz & Gottschalk (1984) also found that
M. violaceum, U. scabiosae, and a species related to
S. hydropiperis formed a monophyletic group. However,
the distinction we observed between the clades Microbotryum and ‘ dicot Ustilago ’ vs Sphacelotheca suggests
that Sphacelotheca is different from Microbotryum, and
could belong to a family distinct from Microbotryaceae.
546
It would be interesting to add the ITS sequences of
Ustilentyloma species to verify whether the Microbotryales are only formed by two families, one parasiting
dicotyledons, the other parasiting monocotyledons
(Bauer et al. 1997, Begerow et al. 1997), or whether
Sphacelotheca species form a third family.
The case of U. duriaeana is complex. The morphology
of this species is different, its spores being larger than in
other ‘ dicot Ustilago ’ species, and its sorus being
formed in the ovary instead of the anthers as for other
caryophyllaceaous species studied. Compared to the
other smuts on dicots in Fig. 1, U. duriaeana is
intermediate between Uredinales and Microbotryales.
The ultrastructure, such as nucleus-associated characters (Swann et al. 1999), and the biology of this species
will be further investigated to assess its particular
phylogenetic position, and its interest in evolution as an
intermediate species between the two orders of the
Urediniomycetes. From our results, although this species
could remain inside the Microbotryales, it does not
seem appropriate to include it in Microbotryum as
proposed by Va! nky (1998b).
Phylogenetic relationships among Microbotryaceae and
taxonomic implications
Our results indicate that the anther smuts on Caryophyllaceae are monophyletic. We found that the ITS
sequences of the species of Microbotryum were highly
homologous (Table 2). These species could have a
common ancestor whose host was probably a Caryophyllaceae, or was related to this family. This could be
the result of a single phenomenon of parasitism followed
by coevolution of the hosts and the parasites. Lepage
et al. (1994) reported that this coevolution is rather
ancient as Microbotryum probably already existed
inside the anthers of plants during the Eocene.
Moreover, different isolates of M. violaceum show a
very strict host specificity (Baker 1947). The existence
of special forms of M. violaceum has been supported by
different molecular approaches (Perlin 1996, Perlin et
al. 1997). However, the comparison of the ITS sequences
of different strains of M. violaceum suggests that some
of these could be considered as distinct species. For
instance, two strains of M. violaceum from Saponaria
sp. formed a separate clade from M. violaceum isolated
on Silene ciliata (Fig. 2). The position of the clade
M. violaceo-verrucosum compared to the clades M.
dianthorum and M. violaceum}Saponaria sp. is uncertain
as their bootstrap support is weak (48).
Inside the ‘ dicot Ustilago ’ clade, the results showed
a lesser monophyly based on the host plant family.
U. scorzonerae and U. scolymi, both parasitic on Asteraceae, are grouped, but not the species which are
pathogenic to Polygonaceae. Although the number of
samples was low for each host family, these results
invalidate the hypothesis of a strict coevolution of all
‘ dicot Ustilago ’ species with their hosts. As proposed
for coevolution of Uredinales with their hosts (Durrieu
T. Almaraz and others
1980, Savile 1990), different mechanisms seem to have
been involved in the evolution of the ‘ dicot Ustilago ’
group, like jumps (biogenic radiation) to host plants
belonging to different families, without direct phylogenetical relationships, i.e. from Polygonaceae to
Lentibulariaceae (Lamiidae), Dipsacaceae, and Compositae (Asteridae).
In a study based on ultrastructural characters, Bauer
et al. (1997) established a classification of Ustilaginales
and related taxa different to that adopted in Hawksworth et al. (1995). They consider the Microbotryales to
include Microbotryaceae and Ustilentylomataceae. They
proposed the Microbotryaceae be used for Microbotryum including the species already known as Microbotryum together with ‘ dicot Ustilago ’ species. Va! nky
(1999) also included three other genera (viz. Sphacelotheca, Liroa, Zundeliomyces), all parasitising dicotyledonous hosts. However, our results showed a clear
dichotomy within species placed in Microbotryum and
‘ dicot Ustilago ’, the clade Microbotryum being in a
basal position of the clade ‘ dicot Ustilago ’. The
Microbotryum species form a monophyletic lineage and
could have evolved from an ancestor common to ‘ dicot
Ustilago ’ species, but independently from them. Although our results support that Microbotryum and
‘ dicot Ustilago ’ belong to a unique family, the
taxonomic significance of the dichotomy of these two
groups has to be discussed. Two contradictory hypotheses can be put forward :
(1) Microbotryum species and ‘ dicot Ustilago ’ could
be considered as a unique taxon, Microbotryum sensu
Bauer & Oberwinkler (1997). The anthericolous species
on Caryophyllaceae constitute an infraspecific lineage
with an independent mechanism of evolution. Such a
strategy of coevolution is not unique among Microbotryum as so circumscribed as it has also been observed
on species parasitic of Asteraceae.
(2) Microbotryum species and ‘ dicot Ustilago ’ can be
considered as different taxa. This is supported by the
observation, in our cladogram, that the two groups are
not nested, and present a dichotomy. This divergence
was also observed by comparison of karyotypes of
different isolates of Microbotryum violaceum and several
‘ dicot Ustilago ’, showing chromosome size polymorphism (Perlin 1996). The genus Microbotryum should
then be restricted to the anthericolous smuts parasitic
on Caryophyllaceae. Meanwhile, neither the anthericolous behaviour, nor structural (spore and basidium
morphology) and ultrastructural (septa without pores)
characters at present described allow two natural groups
to be distinguished. Many species of ‘ dicot Ustilago ’ on
dicotyledons are anthericolous and have reticulated
spores (Va! nky 1994). Ustilago vinosa has spores
identical in shape and size to those of M. violaceum,
while U. scabiosae is anthericolous too. For these
reasons, we also do not accept the generic name
Bauhinus (Moore 1992) described and used confusedly
for Ustilago on dicotyledons in some recent works. We
therefore agree with Bauer & Oberwinkler (1997) that
547
Bauhinus also includes in its circumscription the genera
Microbotryum s. str. and Sphacelotheca.
In conclusion, our results indicate that Sphacelotheca
and an ovariicolous species on Caryophyllaceae, U. duriaeana, are generically distinct from Microbotryum.
The addition of ITS sequences of other ovariicolous
species on Caryophyllaceae (i.e. U. nivalae and U. holostei) would allow the analysis of the autapomorphy
of the character ‘ ovariicolous ’ and the phylogenetic
position of this group. Moreover, a clear dichotomy
is revealed between the Microbotryum s. str. clade and
the ‘ dicot Ustilago ’. However, although Microbotryum
species are morphologically homogeneous, consistent
morphological differences have not been observed to
differentiate the genus from ‘ dicot Ustilago ’. As yet,
this leads to the two clades being included in Microbotryum sensu Bauer & Oberwinkler (1997). While
micromorphological characters (teliospore or basidium
morphology) are often inadequate for separations in
this group of fungi (Swan et al. 1999), further
investigations of the ultrastructure of these species
could reveal characters supporting the distinction of
Bauhinus, corresponding to ‘ dicot Ustilago ’, from
Microbotryum. Lastly, it could be inferred from our
results that Microbotryales may have been originally
parasitic on ancestors of the phylum Caryophyllidae
(orders Polygonales and Caryophyllales). Later separation of host plant species in independent natural
groups could have been involved in the individualisation
of fungal parasitic populations.
A C K N O W L E D G E M E N TS
T. A. was supported by the program DGES ‘ Flora Micologica
Iberica III ’, PB95-0129-C03-01 of the Spanish government.
REFERENCES
Baker, H. G. (1947) Infection of species of Melandrium by Ustilago
violaceae (Pers.) Fuckel and the transmission of the resultant
disease. Annals of Botany 11 : 333–348.
Bauer, R. & Oberwinkler, F. (1997) The Ustomycota : an inventory.
Mycotaxon 64 : 303–319.
Bauer, R., Oberwinkler, F. & Va! nky, K. (1997) Ultrastructural
markers and systematics in smut fungi and allied taxa. Canadian
Journal of Botany 75 : 1273–1314.
Begerow, D., Bauer, R. & Oberwinkler, F. (1997) Phylogenetic
studies on nuclear large subunit ribosomal DNA sequences of smut
fungi and related taxa. Canadian Journal of Botany 75 : 2045–2056.
Blanz, P. A. & Gottschalk, M. (1984) A comparison of 5S rRNA
nucleotide sequences from smut fungi. Systematic and Applied
Microbiology 5 : 518–526.
Bruns, T. D., White, T. J. & Taylor, J. W. (1991) Fungal molecular
systematics. Annual Review of Ecology and Systematics 22 : 525–564.
Denchev, C. M. (1994) Validation of the name Microbotryum vinosum
(Ustilaginales). Mycotaxon 50 : 331.
Denchev, C. M. (1997) New combinations in Bauhinus (Microbotryaceae). Mycotaxon 65 : 419–426.
Durrieu, G. (1980) Les me! canismes e! volutifs chez les Melampsora
(Basidiomyce' tes, Ure! dinales). Comptes Rendus de l ’AcadeU mie des
Sciences de Paris, seU rie 3, Sciences de la Vie 291 (se! rie D) : 849–852.
Felsenstein, J. (1985) Confidence intervals on phylogenies : an
approach using the bootstrap. Evolution 39 : 783–791.
Delimitation of Microbotryum
Galtier, N., Gouy, M. & Gautier, C. (1996) SEAVIEW and
PHYLOjWIN : two graphic tools for sequence alignment and
molecular phylogeny. Computer Applications in Bioscience 12 :
543–548.
Gardes, M. & Bruns, T. D. (1993) ITS primers with enhanced
specificity for basidiomycetes – application to the identification of
mycorrhizae and rusts. Molecular Ecology 2 : 113–118.
Hawksworth, D. L., Kirk, P. M., Sutton, B. C. & Pegler, D. N.
(1995) Ainsworth & Bisby’s Dictionary of Fungi. 8th edn. CAB
International, Wallingford.
Lepage, B. A., Currah, R. S. & Stockey, R. A. (1994) The fossil fungi
of the Princeton Chert. International Journal of Plant Science 155 :
828–836.
Moore, R. T. (1992) The genus Bauhinus gen. nov. : for species of
Ustilago on dicot hosts. Mycotaxon 45 : 97–100.
Moore, R. T. (1996) An inventory of the phylum Ustomycota.
Mycotaxon 59 : 1–31.
Perlin, M. H. (1996) Pathovars or formae speciales of Microbotryum
violaceum differ in electrophoretic karyotype. International Journal
of Plant Sciences 157 : 447–452.
Perlin, M. H., Hughes, C., Welch, J., Akkaraju, S., Steinecker, D.,
Kumar, A., Smith, B., Garr, S. S., Brown, S. A. & Andom, T.
(1997) Molecular approaches to differentiate subpopulations or
formae speciales of the fungal phytopathogen Microbotryum
violaceum. International Journal of Plant Sciences 158 : 568–574.
Prillinger, H., Doerfler, C., Laaser, G. & Hauska, G. (1990) A
contribution to the systematics and evolution of higher fungi : yeast
types in the basidiomycetes. Part III. Ustilago-type. Zeitschrift Fuer
Mykologie 56 : 251–278.
Prillinger, H., Deml, G., Do$ rfler, C., Laaser, G. & Lockau, W. (1991)
Ein Beitrag zur Systematik und Entwicklungsbiologie ho$ herer
Pilze : Hefe-Typen der Basidiomyceten. Teil II : MicrobotryumTyp. Botanica Acta 104 : 5–17.
Prillinger, H., Oberwinkler, F., Umile, C., Tlachac, K., Bauer, R.,
Do$ rfler, C. & Taufratzhofer, E. (1993) Analysis of cell wall
548
carbohydrates (neutral sugars) from ascomycetous and basidiomycetous yeasts with and without derivitization. Journal of General
and Applied Microbiology 39 : 1–34.
Roux, C., Almaraz, T. & Durrieu, G. (1998) Phyloge! nie de
champignons responsables des charbons des ve! ge! taux a' partir de
l’analyse des se! quences ITS. Comptes Rendus de l ’AcadeU mie de
Sciences de Paris, SeU rie 3, Sciences de la Vie 321 : 603–609.
Savile, D. B. O. (1990) Coevolution of Uredinales and Ustilaginales
with vascular plants. Reports of the Tottori Mycological Institute
28 : 15–24.
Swann, E. C., Frieders, E. M. & McLaughlin, D. J. (1999) Microbotryum, Kriegeria and the changing paradigm in basidiomycete
classification. Mycologia 91 : 51–66.
Swann, E. C. & Taylor, J. W. (1993) Higher taxa of basidiomycetes :
an 18S rRNA gene perspective. Mycologia 85 : 923–936.
Swann, E. C. & Taylor, J. W. (1995) Phylogenetic diversity of yeastproducing basidiomycetes. Mycological Research 99 : 1205–1210.
Swofford, D. L. (1993) PAUP : phylogenetic analysis using parsimony.
Version 3±1.1. Center for Biodiversity, Illinois Natural History
Survey, Champaign, IL.
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994) ClustalW
improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties
and weight matrix choice. Nucleic Acids Research 2 : 4673–4680.
Va! nky, K. (1994) European Smut Fungi. Gustav Fisher, Stuttgart.
Va! nky, K. (1998a) The genus Microbotryum (smut fungi). Mycotaxon
67 : 33–60.
Va! nky, K. (1998b) Proposal to conserve the generic name Thecaphora
against Sorosporium (Fungi, Ustilaginales). Taxon 47 : 153.
Va! nky, K. (1999) The new classificatory system for smut fungi, and
two new genera. Mycotaxon 70 : 35–49.
Corresponding Editors : R. J. Vilgalys & D. L. Hawksworth