Mycobiology
ISSN: 1229-8093 (Print) 2092-9323 (Online) Journal homepage: https://www.tandfonline.com/loi/tmyb20
Cytospora elaeagnicola sp. nov. Associated with
Narrow-leaved Oleaster Canker Disease in China
Linxuan Zhang, Lourdes V. Alvarez, Guido Bonthond, Chengming Tian &
Xinlei Fan
To cite this article: Linxuan Zhang, Lourdes V. Alvarez, Guido Bonthond, Chengming Tian & Xinlei
Fan (2019): Cytospora�elaeagnicola sp. nov. Associated with Narrow-leaved Oleaster Canker
Disease in China, Mycobiology, DOI: 10.1080/12298093.2019.1633902
To link to this article: https://doi.org/10.1080/12298093.2019.1633902
© 2019 The Author(s). Published by Informa
UK Limited, trading as Taylor & Francis
Group on behalf of the Korean Society of
Mycology.
Published online: 05 Jul 2019.
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MYCOBIOLOGY
https://doi.org/10.1080/12298093.2019.1633902
RESEARCH ARTICLE
Cytospora elaeagnicola sp. nov. Associated with Narrow-leaved Oleaster
Canker Disease in China
Linxuan Zhanga
, Lourdes V. Alvarezb
, Guido Bonthondc
, Chengming Tiana
and Xinlei Fana
a
The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing, China;
Department of Biology, College of Science, Polytechnic University of the Philippines, Manila, Philippines; cGEOMAR Helmholtz
Centre for Ocean Research Kiel, Kiel, Germany
b
ABSTRACT
ARTICLE HISTORY
Cytospora is a genus including important phytopathogens causing severe dieback and canker diseases distributed worldwide with a wide host range. However, identification of
Cytospora species is difficult since the currently available DNA sequence data are insufficient.
Aside the limited availability of ex-type sequence data, most of the genetic work is only
based on the ITS region DNA marker which lacks the resolution to delineate to the species
level in Cytospora. In this study, three fresh strains were isolated from the symptomatic
branches of Elaeagnus angustifolia in Xinjiang Uygur Autonomous Region, China.
Morphological observation and multi-locus phylogenetic analyses (ITS, LSU, ACT and RPB2)
support these specimens are best accommodated as a distinct novel species of Cytospora.
Cytospora elaeagnicola sp. nov. is introduced, having discoid, nearly flat, pycnidial conidiomata with hyaline, allantoid conidia, and differs from its relatives genetically and by host
association.
Received 5 December 2018
Revised 5 June 2019
Accepted 13 June 2019
1. Introduction
The genus Cytospora contains important phytopathogens causing dieback and stem canker disease on
multiple woody plants [1,2]. It was introduced by
Ehrenberg in 1818 [3] and belonged to the family
Cytosporaceae in Diaporthales [4]. This disease has
globally caused great losses on ecologically and
commercially important woody plants. Cytospora is
characterized by the diaporthalean-like perithecial
ascoma, clavate to elongate obovoid asci with allantoid, hyaline, aseptate ascospores in sexual state; and
the single or labyrinthine locules, filamentous conidiophores, phialidic conidiogenous cells with allantoid, hyaline, aseptate conidia in the asexual state
[2,5]. The asexual name Cytospora (1818) is an older
name than all of the sexual synonyms Valsa (1849),
Leucocytospora (1917), Leucostoma (1917), Valsella
(1870) and Valseutypella (1919), and thus has the
priority in nomenclature [2,6–8]. More than 610
species named Cytospora are listed at present in
Index Fungorum (2019). However, the amount of species in Cytospora was with 110 estimated species [9].
Species criteria of Cytospora were previously based on
host affiliations and morphology in China, however
these bases are unreliable due to the uninformative
CONTACT Xinlei Fan
KEYWORDS
Cytosporaceae; molecular
phylogeny; new
species; taxonomy
illustrations and descriptions, weak host specificity
and overlapping morphological characteristics [10–12].
Recent studies have reported updated phylograms for
the genus Cytospora on the basis of multigene phylogenetic analyses using ex-type or reference strains
[6,7,13–15]. However, because availability of the extype sequence data is limited to few species, identification of a strain to species level is very difficult.
Recently, only 14 new species were included to this
genus [16].
Elaeagnus angustifolia is a drought-resistant tree
that is grown as a major biomass energy source [17],
and has high medicinal and ecological value as well
[18]. Furthermore, during an investigation of phytopathogens in north of China, most E. angustifolia
trees were observed to suffer from dieback and stem
canker caused by Cytospora species. In the current
study, three representative Cytospora strains
were collected from Elaeagnus angustifolia in Xinjiang
Uygur Autonomous Region, China. Multilocus phylogenetic analyses using combination of ITS, LSU, ACT
and RPB2 sequences confirmed finding of a new species in Cytospora. In this paper, C. elaeagnicola sp.
nov. is introduced, accompanied with descriptions,
illustrations and comparison with other species in
the genus.
xinleifan@bjfu.edu.cn
ß 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group on behalf of the Korean Society of Mycology.
This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/Licenses/by-nc/4.0/),
which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
2
L. ZHANG ET AL.
2. Materials and methods
2.1. Sample collection and isolation
Fresh samples of Cytospora were collected from
infected branches and stems of E. angustifolia during investigations of phytopathogens in Xinjiang
Uygur Autonomous Region, China. The samples
placed in paper bags were brought to the laboratory for processing and experimental purpose
using the same methodology as in Fan et al.
[14,15]. Single conidia were isolated by taking
fruiting bodies and suspend the mucoid spore
mass removed from conidiomata or ascomata in a
drop of sterile water. The spore suspension from
each sample was then spread over the surface of
1.8% potato dextrose agar (PDA) medium in a
petri-dish and incubated at 25 C. After 24 h, a single germinating conidium was transferred to a
fresh PDA plate. Samples and isolates of the new
species were deposited in the Museum of Beijing
Forestry University (BJFC) and single-spore cultures in the China Forestry Culture Collection
Center (CFCC).
2.2. Morphology observation
Samples were observed on infected plant tissues
including the structure and size of fruiting bodies.
The photographs of the macro-morphological characteristics were recorded using a Leica stereomicroscope (M205 FA) while the micro-morphological
observations were determined under a Leica compound microscope (DM 2500) with differential
interference contrast (DIC). Over 20 fruiting bodies
were sectioned, both vertically and horizontally, and
50 conidia were selected randomly to get the measurement of their length and width. Cultural characteristics, including the colony characters and the
production of pigment of isolates on PDA incubated
at 25 C in the dark were recorded, after 3, 7, and
30-days growth [19].
2.3. DNA extraction, PCR amplification,
and sequencing
Fungal mycelium grown on the cellophane of PDA
was scraped for the extraction of genomic DNA following a modified CTAB approach [20]. The ITS
region was amplified with the primers ITS1 and
ITS4 [21]; the LSU region with LR0R and LR7
[22]; the partial ACT region with ACT512F and
ACT783R [23] and the RPB2 region with RPB2-5F
and fRPB2-7cR [24]. The PCR amplicons were estimated visually by electrophoresis in 2% agarose gels.
Fragments were sequenced in both directions using
the respective primers and the BigDye Terminater
v.3.1 Cycle Sequencing Kit (Applied Biosystems;
Foster City, CA). Sequences were joined and quality
was examined with Seqman v.7.1.0 in the DNASTAR
lasergene core suite software (DNASTAR Inc.;
Madison, WI).
2.4. DNA sequence analysis
Sequences based on ITS region and the combined
dataset (ITS, LSU, ACT and RPB2) were aligned
using MAFFT v.6 [25] and edited manually using
MEGA6 [26], and some characters were excluded
from both ends of the alignments to approximate
the size of our sequences to those included in
the dataset.
MP analysis was carried out by using PAUP
v.4.0b10 with a heuristic search option of 1000 random-addition sequences with a tree bisection and
reconnection (TBR) as the branch swapping algorithm [27]. Zero length branches were collapsed,
whereas all equally parsimonious trees were saved.
Stability of the clade was assessed with a bootstrap
analysis of 1000 replicates [28]. Other measures calculated parsimony scores were tree length (TL), consistency index (CI), retention index (RI) and rescaled
consistency (RC) [27]. ML analysis was carried out by
using RAxML v.7.2.8 with a GTR þ G þ I model of
site substitution, including estimation of gamma-distributed rate heterogeneity and a proportion of invariant sites [29]. And the branch support from MP and
ML analyses was evaluated with a bootstrapping
method of 1000 replicates [28].
BI analysis employing a Markov Chain Monte
Carlo (MCMC) algorithm was performed using in
MrBayes v.3.1.2 with the inverse gamma rates
(GTR þ I þ G) nucleotide substitution model, which
was selected based on the AIC criterion, using
MrModeltest v.2.3 [30,31]. Two MCMC chains were
run from random trees for 1,000,000 generations,
and trees were sampled every 100th generation,
resulting in 10,000 total trees. The first 25% of trees
were discarded as the burn-in phase of the analysis
and the Bayesian posterior probabilities (BPP) were
calculated using the remaining 7500 trees [32].
In all analyses, C. elaeagnicola was selected as a
distinct and new grape. Phylograms were examined
in Figtree v.1.3.1 [33]. Novel sequence data was
deposited in GenBank (Table 1), the multilocus
sequences alignment file was deposited in TreeBASE
(www.treebase.org) accession S24181 and the taxonomic novelty was deposited in MycoBank.
3. Results
3.1. Phylogeny
The ITS sequences of the three isolates of
Cytospora from E. angustifolia were aligned with
MYCOBIOLOGY
3
Table 1. Isolates and GenBank accession numbers used in this study.
GenBank accession numbers
Species
C. abyssinica
C. abyssinica
C. acaciae
C. ampulliformis
C. ampulliformis
C. atrocirrhata
C. atrocirrhata
C. austromontana
C. berberidis
C. berberidis
C. berkeleyi
C. berkeleyi
C. brevispora
C. brevispora
C. carbonacea
C. carpobroti
C. cedri
C. centrivillosa
C. centrivillosa
C. chrysosperma
C. chrysosperma
C. chrysosperma
C. cinerostroma
C. cincta
C. cotini
C. curvata
C. davidiana
C. davidiana
C. diatrypelloidea
C. disciformis
C. disciformis
C. donetzica
C. donetzica
C. elaeagni
C. elaeagni
C. elaeagnicola
C. elaeagnicola
C. elaeagnicola
C. eriobotryae
C. erumpens
C. eucalypti
C. eucalypticola
C. eucalypticola
C. eucalyptina
C. eugeniae
C. eugeniae
C. fraxinigena
C. fraxinigena
C. friesii
C. fugax
C. fugax
C. germanica
C. gigaspora
C. gigaspora
C. gigaspora
C. gigaspora
C. hippopha€es
C. hippopha€es
C. japonica
C. junipericola
C. junipericola
C. kantschavelii
C. kantschavelii
C. kunzei
C. leucosperma
C. leucosperma
C. leucostoma
C. leucostoma
C. longiostiolata
C. mali
C. mali
C. melnikii
C. melnikii
C. melnikii
C. mougeotii
C. multicollis
Strain
Host
ITS
LSU
ACT
RPB2
CMW 10181T
CMW 10178
CBS 468.69
MFLUCC 16-0583T
MFLUCC 16-0629
CFCC 89615
CFCC 89616
CMW 6735T
CFCC 89927T
CFCC 89933
StanfordT3T
UCBTwig3
CBS 116829
CBS 116811T
CFCC 89947
CMW 48981T
CBS 196.50
MFLUCC 16-1206T
MFLUCC 17-1660
CFCC 89629
CFCC 89981
CFCC 89982
CMW 5700T
ATCC 32673
MFLUCC 14-1050T
MFLUCC 15-0865T
CXY 1350T
CXY 1374
CMW 8549T
CMW 6509T
CMW 6750
MFLUCC 16-0574T
MFLUCC 15-0864
CFCC 89632
CFCC 89633
CFCC 52882T
CFCC 52883
CFCC 52884
IMI 136523T
MFLUCC 16-0580T
LSEQ
ATCC 96150T
CMW 5309
CMW 5882
CMW 7029
CMW 8648
BBH 42442
MFLUCC 14-0868T
CBS 194.42
CXY1371
CXY1381
CXY1322
CFCC 89620T
CFCC 89621
CFCC 50014
CFCC 89634T
CFCC 89639
CFCC 89640
CBS 375.29
BBH 42444
MFLU 17-0882T
CXY1383
CXY1386
CBS 118556
CFCC 89622
CFCC 89894
CFCC 50016
CFCC 50015
MFLUCC 16-0628T
CFCC 50031
CFCC 50044
CFCC 89984
MFLUCC 15-0851T
MFLUCC 16-0635
ATCC 44994
CBS 105.89T
Eucalyptus globulus
Eucalyptus globulus
Ceratonia siliqua
Sorbus intermedia
Acer platanoides
Juglans regia
Juglans regia
Eucalyptus pauciflora
Berberis dasystachya
Berberis dasystachya
Eucalyptus globulus
Eucalyptus globulus
Eucalyptus grandis
Eucalyptus grandis tereticornis
Ulmus pumila
Carpobrotus edulis
–
Sorbus domestica
Sorbus domestica
Salix psammophila
Populus alba subsp. pyramidalis
Ulmus pumila
Eucalyptus globulus
–
Cotinus coggygria
Salix alba
Populus davidiana
Populus davidiana
Eucalyptus globulus
Eucalyptus grandis
Eucalyptus globulus
Rosa sp.
Crataegus monogyna
Elaeagnus angustifolia
Elaeagnus angustifolia
Elaeagnus angustifolia
Elaeagnus angustifolia
Elaeagnus angustifolia
Eriobotrya japonica
Salix fragilis
Sequoia sempervirens
Eucalyptus nitens
Eucalyptus grandis
Eucalyptus grandis
Tibouchina sp.
Eugenia sp.
Fraxinus ornus
Fraxinus ornus
Abies alba
Populus simonii
Populus ussuriensis
Elaeagnus oxycarpa
Juglans regia
Juglans regia
Juniperus procumbens
Salix psammophila
Hippophae rhamnoides
Hippophae rhamnoides
Prunus persicae
Juniperus communis
Juniperus communis
Populus maximowiczii
Populus maximowiczii
Pinus radiata
Pyrus bretschneideri
Pyrus bretschneideri
Sorbus aucuparia
Sorbus pohuashanensis
Salix fragilis
Crataegus sp.
Malus baccata
Rhus typhina
Malus domestica
Populus nigra
Picea abies
Quercus ilex subsp. rotundifolia
AY347353
AY347354
DQ243804
KY417726
KY417727
KR045618
KR045619
AY347361
KR045620
KR045621
AY347350
AY347349
AF192321
AF192315
KR045622
MH382812
AF192311
MF190122
MF190123
KF765673
MH933625
KP281261
AY347377
DQ996041
KX430142
KY417728
KM034870
KM034869
AY347368
AY347374
AY347359
KY417731
KY417729
KR045626
KF765677
MK732341
MK732342
MK732343
AY347327
KY417733
AY347340
AY347358
AF260266
AY347375
AY347364
AY347344
MF190134
MF190133
AY347328
KM034852
KM034853
JQ086563
KR045628
KR045629
KR045630
KF765671
KR045632
KF765682
AF191185
MF190126
MF190125
KM034867
KM034867
DQ243791
KR045616
KR045617
MH820400
KR045634
KY417734
KR045636
KR045637
MH933644
KY417735
KY417736
AY347318
DQ243803
–
–
–
KY417760
KY417761
KR045700
KR045701
–
KR045702
KR045703
–
–
–
–
KP310812
MH411216
–
MF190068
MF190069
KF765689
MH933660
KP310805
–
–
KX430143
KY417762
–
–
–
–
–
KY417764
KY417763
KR045706
KF765693
MK732338
MK732339
MK732340
–
KY417767
–
–
–
–
–
–
MF190079
MF190078
–
–
–
JX524617
KR045708
KR045709
KR045710
KF765687
KR045712
KF765698
–
MF190071
MF190072
–
–
–
KR045698
KR045699
MH820393
KR045714
KY417768
KR045716
KR045717
MH933678
KY417769
KY417770
–
–
–
–
–
KY417692
KY417693
KF498673
KF498674
–
KU710990
KU710991
–
–
–
–
KP310842
–
–
–
–
KF765721
MH933533
KP310835
–
–
–
KY417694
–
–
–
–
–
KY417696
KY417695
KU710995
KU710996
MK732344
MK732345
MK732346
–
KY417699
–
–
–
–
–
–
–
–
–
–
–
–
KU710997
KU710998
KU710999.
KU711000
KU711001
KF765730
–
–
–
–
–
–
KU710988
KU710989
MH820408
KU711002
KY417700
KU711004
KU711005
MH933551
KY417701
KY417702
–
–
–
–
–
KY417794
KY417795
KU710946
KU710947
–
KU710948
KU710949
–
–
–
–
KU710950
–
–
MF377600
MF377601
KF765705
MH933597
KU710952
–
–
KX430144
KY417796
–
–
–
–
–
KY417798
KY417797
KU710955
KU710956
MK732347
MK732348
MK732349
–
KY417801
–
–
–
–
–
–
–
–
–
–
–
–
KU710957
KU710958
KU710959
KU710960
KU710961
KU710962
–
–
–
–
–
–
KU710944
KU710945
–
–
KY417802
KU710965
KU710966
MH933609
KY417803
KY417804
–
–
(continued)
4
L. ZHANG ET AL.
Table 1. Continued.
GenBank accession numbers
Species
C. myrtagena
C. nivea
C. nivea
C. nivea
C. palm
C. palm
C. parakantschavelii
C. parakantschavelii
C. parapersoonii
C. parasitica
C. paratranslucens
C. paratranslucens
C. pini
C. pini
C. populina
C. predappioensis
C. pruinopsis
C. pruinosa
C. pruinosa
C. pruinosa
C. prunicola
C. quercicola
C. quercicola
C. rhizophorae
C. ribis
C. ribis
C. rosae
C. rostrata
C. rostrata
C. rusanovii
C. rusanovii
C. sacculus
C. sacculus
C. salicacearum
C. salicacearum
C. salicacearum
C. salicicola
C. salicicola
C. salicina
C. salicina
C. schulzeri
C. schulzeri
C. sibiraeae
C. sibiraeae
C. sophorae
C. sophorae
C. sophoricola
C. sophoricola
C. sorbi
C. sorbicola
C. sorbicola
C. spiraeae
C. spiraeae
C. tanaitica
C. tibouchinae
C. translucens
C. ulmi
C. valsoidea
C. valsoidea
C. variostromatica
C. variostromatica
C. vinacea
C. viticola
Diaporthe vaccinii
Strain
CBS 116843T
MFLUCC 15-0860
CFCC 89641
CFCC 89643
CXY1276
CXY1280T
MFLUCC 15-0857T
MFLUCC 16-0575
T28.1T
MFLUCC 15-0507T
MFLUCC 15-0506T
MFLUCC 16-0627
CBS 197.42
CBS 224.52T
CFCC 89644T
MFLUCC 17-2458T
CFCC 50034T
CFCC 50035
CFCC 50036
CFCC 50037
MFLU 17-0995T
MFBBH 42443
MFLUCC 14-0867T
MUCC302
CFCC 50026
CFCC 50027
MFLU 17-0885T
CFCC 89909T
CFCC 89910
MFLUCC 15-0853
MFLUCC 15-0854T
CFCC 89624
CFCC 89625
MFLUCC 15-0509T
MFLUCC 15-0861
MFLUCC 16-0587
MFLUCC 15-0866
MFLUCC 14-1052T
MFLUCC 15-0862T
MFLUCC 16-0637
CFCC 50040
CFCC 50042
CFCC 50045T
CFCC 50046
CFCC 50047
CFCC 89598
CFCC 89596
CFCC 89595T
MFLUCC 16-0631T
MFLUCC 16-0584T
MFLUCC 16-0633
CFCC 50049T
CFCC 50050
MFLUCC 14-1057T
CPC 26333T
CXY1351
MFLUCC 15-0863T
CMW 4309T
CMW 4310
CMW 6766T
CMW 1240
CBS 141585T
CBS 141586T
CBS 160.32
Host
Tibouchiina urvilleana
Salix acutifolia
Elaeagnus angustifolia
Salix psammophila
Cotinus coggygria
Cotinus coggygria
Populus sibirica
Pyrus pyraster
Prunus persicae
Malus domestica
Populus alba var. bolleana
Populus alba
Pinus Sylvestirs
Pinus strobus
Salix psammophila
Platanus sp.
Ulmus pumila
Ulmus pumila
Syzygium aromaticum
Syzygium aromaticum
Prunus sp.
Quercus sp.
Quercus sp.
Eucalyptus grandis
Ulmus pumila
Ulmus pumila
Rosa canina
Salix cupularis
Salix cupularis
Populus sibirica
Salix babylonica
Juglans regia
Juglans regia
Salix alba
Salix fragilis
Prunus cerasus
Salix alba
Salix alba
Salix alba
Salix fragilis
Malus domestica
Malus asiatica
Sibiraea angustata
Sibiraea angustata
Styphnolobium japonicum
Styphnolobium japonicum
Styphnolobium japonicum
Styphnolobium japonicum var.
Sorbus aucuparia
Acer pseudoplatanus
Cotoneaster melanocarpus
Spiraea salicifolia
Spiraea salicifolia
Betula pubescens
Tibouchina semidecandra
Populus davidiana
Ulmus minor
Eucalyptus grandis
Eucalyptus grandis
Eucalyptus globulus
Eucalyptus grandis
Vitis interspecific
Vitis vinifera
Vaccinium macrocarpon
ITS
LSU
ACT
RPB2
AY347363
KY417737
KF765683
KF765685
JN402990
JN411939
KY417738
KY417739
AF191181
KY417740
KY417741
KY417742
AY347332
AY347316
KF765686
MG873484
KP281259
KP281260
KP310800
MH933650
MG742350
MF190128
MF190129
EU301057
KP281267
KP281268
MF190131
KR045643
KR045644
KY417743
KY417744
KR045645
KF225616
KY417746
KY417745
KY417748
KY417749
KU982636
KY417750
KY417751
KR045649
KR045650
KR045651
KR045652
KR045653
KR045654
KR045656
KR045655
KY417752
KY417755
KY417758
MG707859
MG707860
KT459411
KX228284
KM034874
KY417759
AF192312
AF192312
AY347366
AF260263
KX256256
KX256239
KC343228
–
KY417771
KF765699
–
–
–
KY417772
KY417773
–
KY417774
KY417775
KY417776
–
–
KF765702
MG873480
KP310806
KP310807
KP310802
MH933685
MG742351
MF190074
MF190073
–
KP310813
KP310814
MF190075
KR045722
KR045723
KY417777
KY417778
KR045724
KM401887
KY417780
KY417779
KY417782
KY417783
KU982635
KY417784
KY417785
KR045728
KR045729
KR045730
KR045731
KR045732
KR045733
KR045735
KR045734
KY417786
KY417789
KY417792
MG707643
MG707644
KT459412
KX228335
–
–
–
–
–
–
–
–
–
–
KY417703
KU711006
–
–
–
KY417704
KY417705
–
KY417706
KY417707
KY417708
–
–
KU711007
–
KP310836
KP310837
KP310832
MH933558
MG742353
–
–
–
KP310843
KP310844
–
KU711009
KU711010
KY417709
KY417710
KM401888
KM401889
KY417712
KY417711
KY417714
KY417715
KU982637
KY417716
KY417717
KU711013
KU711014
KU711015
KU711015
KU711017
KU711018
KU711020
KU711019
KY417718
KY417721
KY417724
MG708196
MG708197
KT459413
–
–
–
–
–
–
–
–
–
JQ807297
–
KY417805
KU710967
KU710968
–
–
KY417806
KY417807
–
KY417808
KY417809
KY417810
–
–
KU710969
–
KU710970
KU710971
–
–
MG742352
–
–
–
KU710972
–
–
KU710974
KU710975
KY417811
KY417812
KU710976
–
KY417814
KY417813
KY417816
KY417817
–
KY417818
KY417819
KU710980
KU710981
KU710982
KU710983
KU710984
KU710985
KU710987
KU710986
KY417820
KY417823
KY417826
MG708199
MG708200
–
–
–
–
–
–
–
–
–
–
–
All the new isolates used in this study are indicated in bold type and the strains from type materials are marked by an superscript (T).
available ITS sequences from related Cytospora species of published articles, resulting in an alignment
containing 138 Cytospora ingroup strains and a
total of 609 characters including gaps. In the alignment, 369 characters were constant, 72 variable
characters were parsimony-uninformative and 168
characters
were
variable
and
parsimony-
informative. MP analyses generated 145 parsimonious trees, one of which is presented in Figure 1
(TL ¼ 927, CI ¼ 0.409, RI ¼ 0.830, RC ¼ 0.339).
ML and BI analyses resolved results similar to the
MP tree. C. elaeagnicola represented a monophyletic clade with overall high bootstrap support values (MP/ML/BI ¼ 99/100/1; marked in blue in
MYCOBIOLOGY
5
Figure 1. Phylogram of Cytospora based on ITS gene. MP and ML bootstrap support values above 50% are shown at the first
and second position. Thickened branches represent posterior probabilities above 0.95 from BI. Ex-type strains are in bold.
Strains in current study are in blue.
6
L. ZHANG ET AL.
Figure 1. Continued
Figure 1). Subsequently, phylogenetic analyses were
performed based on a concatenated alignment of
ITS, LSU, ACT and RPB2 from published articles,
comprised of 102 Cytospora ingroup strains with a
total of 2207 characters including gaps. In the
alignment, 1538 characters were constant, 104 variable characters were parsimony-uninformative and
565 characters were variable and parsimonyinformative. MP analysis generated 105 parsimonious trees, one of which is presented in Figure 1
(TL ¼ 2,350, CI ¼ 0.412, RI ¼ 0.827, RC ¼ 0.341).
ML and BI analyses were similar to the MP tree.
Cytospora elaeagnicola represented a monophyletic
clade with full support values (MP/ML/BI ¼ 100/
100/1) (marked in blue in Figure 2).
3.2. Taxonomy
Cytospora elaeagnicola X.L. Fan sp. nov. Figure 3
Mycobank: MB830292.
Etymology: Named after the host genus on which
it was collected, Elaeagnus.
MYCOBIOLOGY
7
Figure 2. Phylogram of Cytospora based on combined ITS, LSU, ACT and RPB2 genes. MP and ML bootstrap support values
above 50% are shown at the first and second position. Thickened branches represent posterior probabilities above 0.95 from
BI. Ex-type strains are in bold. Strains in current study are in blue.
Holotype: CF 20175831.
Host/Distribution: from branches of Elaeagnus
angustifolia in China.
Descriptions: Asexual state: Conidiomata pycnidial,
ostiolate, discoid, nearly flat, immersed in bark, scattered, producing black area on bark, erumpent through
the surface of bark when mature. Locules multiple,
circular to ovoid, arranged irregularly with common
walls, (890–)905–1160(–1240) lm (x ¼ 1060 ± 120 mm,
n ¼ 30) in diameter. Conceptacle absent. Ectostromatic
disc iron grey to violaceous black, circular, disc dark,
(160–)170–310(–350) mm (x ¼ 240 ± 60 mm, n ¼ 30) in
diameter, with one ostiole in the centre of disc. Ostiole
conspicuous, circular to ovoid, iron grey to violaceous
8
L. ZHANG ET AL.
Figure 2. Continued
black at the same level as the disc, (48–)51–71(–78) mm
(x ¼ 60 ± 11 mm, n ¼ 30) in diameter. Conidiophores
hyaline, branched at base or not branched, thin
walled, filamentous, (12–)13.5–19.5(–20) lm (x ¼
16.5 ± 3 mm, n ¼ 30). Conidiogenous cells enteroblastic, phialidic. Conidia hyaline, allantoid, eguttulate,
smooth, aseptate, thin-wall, 5.5–6.5(–7) (1–)1.5–2
mm (x ¼ 6.1 ± 0.4 1.6 ± 0.1 mm, n ¼ 50). Sexual
morph: not observed.
Culture characteristics: On PDA, cultures are
white. The colony is flat, felt-like with a thick texture
at the center with thin surrounding texture. Pycnidia
are sparse, distributed irregularly on medium surface.
Materials examined: China, Xinjiang Uygur
Autonomous Region, Bole Mongol Autonomous
Prefecture, Provincial Road 202, 45 06’29.50"N,
82 33’32.82"E, from branches of Elaeagnus angustifolia,
July 2017, C.M. Tian & X.L. Fan, deposited by X.L.
Fan, holotype CF 20175831, ex-type living culture
CFCC 52882; ibid. CF 20175832, living culture CFCC
52883; CF 20175833, living culture CFCC 52884.
Notes: Cytospora elaeagnicola is associated with
canker disease of Elaeagnus angustifolia. The phylogenetic inferences resolved this species as
an individual clade both in ITS and combined multigene phylograms (Figures 1 and 2), which was closed
to
C.
spiraeae
from
Spiraea
salicifolia.
Morphologically, Cytospora elaeagnicola has obvious
symptoms with black area on bark, and smaller conidia (5.5–6.5 1.5–2 vs. 7–8 2–2.5 mm) as compared
with C. spiraeae; the cultures of C. elaeagnicola are
white, differing from the cultures of C. spiraeae which
becomes fawn after 7–10 days [34]. Considering the
clearly distinction between these two species based on
molecular phylogenetic position and on the host affiliation, Cytospora elaeagnicola is thus described as a
novel species.
4. Discussion
In the current study, C. elaeagnicola sp. nov. was
described from infected branches and twigs of E.
MYCOBIOLOGY
9
Figure 3. Morphology of Cytospora elaeagnicola from Elaeagnus angustifolia (CF 20175831). (A), (B) Habit of conidiomata on
twig; (C) Transverse section of conidioma; (D) Longitudinal section through conidioma; (E) Conidiophores and conidiogenous
cells; (F) Conidia; (G) Colonies on PDA after 3 d and 14 d (scale bars: B–C ¼ 250 lm, D ¼ 200 lm, E ¼ 10 lm, F ¼ 5 lm).
angustifolia in northwest region of China, an area
that has undergone desertification at an alarming rate.
Previously, Fan et al. [7] described C. elaeagni and C.
nivea from E. angustifolia during the investigation of
canker disease of three anti-desertification plants.
Compared to C. elaeagnicola, C. elaeagni has smaller
locules
(630–920 mm)
with
larger
conidia
(6.3–9.3 2–2.9 mm) and dense cultures producing
light brown pigment; C. nivea has obvious dark black
conceptacle surrounding the conidiomata with larger
conidia (6.2–9.2 1.7–2.4 mm), and cultures producing dark green to black pigment [7]. These morphological deviations are in line with the combined
phylogenetic analyses which resolved C. elaeagnicola
as a separate, highly supported clade, both in the single ITS analyses and the concatenated analyses.
Cytospora species were previously identified by
host association and morphological characteristics.
However, the uninformative illustrations and descriptions, overlapping morphological characteristics and
low host-specificity have caused confusion in the
identification of strains. Current study indicated more
than one species of Cytospora are present on one host
plant. In the future study, the taxonomy requires fresh
collections from wide geographical ranges with comprehensive pathogenicity tests. Further studies are
also needed in the clarification of the species diversity
and in the understanding of their roles in plant diseases, especially for anti-desertification plants such as
E. angustifolia in Northwestern China.
Disclosure statement
No potential conflict of interest was reported by
the authors.
10
L. ZHANG ET AL.
Funding
[15]
This work was supported by the [National Natural Science
Foundation of China] under Grant [number 31670647]. All
authors want to thank the Experimental Teaching Centre
(College of Forestry, Beijing Forestry University) for providing installed scientific equipments during the whole process.
[16]
ORCID
Linxuan Zhang
http://orcid.org/0000-0002-4828-882X
Lourdes V. Alvarez
http://orcid.org/0000-00033246-5489
Guido Bonthond
http://orcid.org/0000-0002-9823-6761
Chengming Tian
http://orcid.org/0000-0002-3352-7664
Xinlei Fan
http://orcid.org/0000-0002-4946-4442
[17]
[18]
[19]
[20]
[21]
References
[1]
[2]
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10]
[11]
[12]
[13]
[14]
Spielman LJ. Taxonomy and biology of Valsa species
on hardwoods in North America, with special reference to species on maples. New York, US: Cornell
University; 1983.
Adams GC, Wingfield MJ, Common R, et al.
Phylogenetic
relationships
and
morphology
of Cytospora species and related teleomorphs
(Ascomycota, Diaporthales, Valsaceae) from
Eucalyptus. Stud Mycol. 2005;52:1–144.
Ehrenberg CG. Sylvae Mycologicae Berolinenses.
Berlin: Formis Theophili Bruschcke;1818.
Wijayawardene NN, Hyde KD, Lumbsch HT, et al.
Outline of Ascomycota: 2017. Fungal Divers. 2018;
88:167–263.
Spielman LJ. A monograph of Valsa on hardwoods in North America. Can J Bot. 1985;63:
1355–1378.
Fan XL, Hyde KD, Liu M, et al. Cytospora species
associated with walnut canker disease in China,
with description of a new species C. gigalocus.
Fungal Biol. 2015;119:310–319.
Fan XL, Hyde KD, Yang Q, et al. Cytospora species associated with canker disease of three antidesertification plants in northwestern China.
Phytotaxa. 2015;197:227–244.
Rossman AY, Adams GC, Cannon PF, et al.
Recommendations
of
generic
names
in
Diaporthales competing for protection or use.
IMA Fungus. 2015;6:145–154.
Kirk PM, Cannon PF, Minter DW, et al.
Ainsworth & Bisby’s Dictionary of the Fungi, 10th
edn. Wallingford, UK: CABI; 2008.
Deng SQ. Fungi of China. Beijing, China;1963.
Tai FL. Sylloge Fungorum Sinicorum. Beijing,
China;1979.
Wei JC. Identification of Fungus Handbook.
Shanghai, China; 1979.
Zhang YB, You CJ, Fan XL, et al. Taxonomy and
phylogeny of Cytospora in Northeast China.
Mycosystema. 2014;33:806–818.
Fan XL, Liang YM, Ma R, et al. Morphological
and phylogenetic studies of Cytospora (Valsaceae,
Diaporthales) isolates from Chinese scholar tree,
with description of a new species. Mycoscience.
2014;55:252–259.
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30]
[31]
[32]
[33]
[34]
Fan XL, Tian CM, Yang Q, et al. Cytospora from Salix
in northern China. Mycotaxon. 2014;129:303–315.
Norphanphoun C, Doilom M, Daranagama DA,
et al. Revisiting the genus Cytospora and allied
species. Mycosphere. 2017;8:51–97.
Chang W, Sui X, Fan XX, et al. Arbuscular mycorrhizal symbiosis modulates antioxidant response
and ion distribution in salt-stressed Elaeagnus
angustifolia seedlings. Front Microbiol. 2018;9:625.
Mahboubi M. Elaeagnus angustifolia and its therapeutic applications in osteoarthritis. Ind Crops
Prod. 2018;121:36–45.
Rayner RW. A mycological colour chart. Kew, UK:
Commonwealth Mycological Institute; 1970.
Doyle JJ, Doyle JL. Isolation of plant DNA from
fresh tissue. Focus. 1990;12:13–15.
White TJ, Bruns T, Lee S, et al. Amplification and
direct sequencing of fungal ribosomal RNA genes
for phylogenetics. In: Innis MA, Gelfand DH,
Sninsky JJ and White TJ (eds), PCR Protocols: a
Guide to Methods and Applications. London:
Academic Press; 1990. pp. 315–322.
Vilgalys R, Hester M. Rapid genetic identification
and mapping of enzymatically amplified ribosomal
DNA from several Cryptococcus species. J Bacteriol.
1990;172:423.
Carbone I, Kohn L. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia. 1999;91:553–556.
Liu YL, Whelen S, Hall BD. Phylogenetic relationships among ascomycetes: evidence from an RNA
polymerase II subunit. Molec Biol Evol. 1999;16:
1799–1808.
Katoh K, Standley DM. MAFFT multiple sequence
alignment software version 7: improvements in
performance and usability. Molec Biol Evol. 2013;
30:772–780.
Tamura K, Stecher G, Peterson D, et al. MEGA6:
molecular evolutionary genetics analysis version
6.0. Mol Biol and Evol. 2013;30:2725–2729.
Swofford DL. PAUP: Phylogenetic analysis using
parsimony, and other methods. Version 4.0b10.
Sinauer Associates, Sunderland; 2003.
Hillis DM, Bull JJ. An empirical test of bootstrapping as a method for assessing confidence in
phylogenetic analysis. Syst Biol. 1993;42:182–192.
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands
of taxa and mixed models. Bioinformatics. 2006;
22:2688–2690.
Posada D, Crandall KA. Modeltest: testing the
model of DNA substitution. Bioinformatics. 1998;
14:817–818.
Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian
phylogenetic inference under mixed models.
Bioinformatics. 2003;19:1572–1574.
Rannala B, Yang Z. Probability distribution of
molecular evolutionary trees: a new method of
phylogenetic inference. J Mol Evol. 1996;43:304–311.
Rambaut A, Drummond A. FigTree v.1.3.1. Institute
of evolutionary biology. Edinburgh, UK: University
of Edinburgh; 2010.
Zhu HY, Fan XL, Tian CM. Multigene phylogeny and morphology reveal Cytospora spiraeae. Phytotaxa. 2018;338:49–62.