An integrative perspective into diversity in Acarospora (Acarosporaceae,
Ascomycota), including a new species from the Great Basin, U.S.A.
Author(s): Steven D. Leavitt, Clayton C. Newberry, Jason Hollinger, Benjamin Wright and Larry L. St.
Clair
Source: The Bryologist, 121(3):275-285.
Published By: The American Bryological and Lichenological Society, Inc.
https://doi.org/10.1639/0007-2745-121.3.275
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An integrative perspective into diversity in Acarospora (Acarosporaceae,
Ascomycota), including a new species from the Great Basin, U.S.A.
Steven D. Leavitt1,2,4, Clayton C. Newberry2, Jason Hollinger3, Benjamin Wright2 and Larry L. St. Clair2
1
Department of Biology, Brigham Young University, 4102 Life Science Building, Provo, UT 84602, U.S.A.; 2 M. L. Bean
Life Science Museum, Brigham Young University, 4102 Life Science Building, Provo, UT 84602, U.S.A.; 3 7726 Fowler
Ave., Reno, NV 89506, U.S.A.
ABSTRACT. A broad range of morphological variation is known to occur within the lichen-forming fungal
genus Acarospora (Acarosporaceae, Ascomycota). In this study, we investigated the relationships of a
number of interesting Acarospora collections from western North America using morphological, chemical
and molecular sequence data. Our results revealed patterns of apparent convergence of some
morphologies traditionally considered a single taxon, coupled with a striking range of morphological
disparity within other lineages. Based on the results of this study, a species of lichen-forming fungi,
Acarospora tintickiana sp. nov., is formally described as new to science, occurring on hard limestone
substrates in the Great Basin of western North America. Furthermore, a number of additional candidate
species are recognized and merit additional research before formal taxonomic recognition. This study
highlights the importance of implementing an integrative taxonomic approach, incorporating a broad
range of data, including molecular sequence data, for diagnosing evolutionarily independent species-level
lineages in lichen-forming fungi.
KEYWORDS. Acarospora nevadensis, A. strigata, A. tintickiana sp. nov., Great Basin, integrative taxonomy.
^
Many lineages of lichen-forming fungi are wellknown for their broad range of phenotypic variation
(Divakar et al. 2015; Gaya et al. 2008; Naesborg
2008). Striking diversity can be observed among
closely related congeners (Divakar et al. 2017),
within species (Pérez-Ortega et al. 2012), or even
in ‘‘individual’’ lichen thalli (Larson & Carey 1986).
In other cases, convergence towards similar phenotypes in distantly related lineages may lead to
misinterpretations of diversity and evolutionary
relationships (Argüello et al. 2007; Stenroos &
DePriest 1998). Difficulties in appropriately interpreting phenotypic variation are not restricted to
lichen-forming fungi (e.g., Redecker et al. 2013).
However, assessing diversity in lichen-forming fungi
is further complicated by the fact that lichen
phenotypes are determined, to varying degrees, by
interactions among a range of evolutionarily distantly related organisms in the lichen holobiont
4
Corresponding author’s e-mail: steve_leavitt@byu.edu
DOI: 10.1639/0007-2745-121.3.275
The Bryologist 121(3), pp. 275–285 Published online: July 25 2018
Copyright Ó2018 by The American Bryological and Lichenological Society, Inc.
^
^
(Honegger 2001; Renner & Galloway 1982). Differing interpretations of phenotypic variation in lichens
often result in disparate taxonomic conclusions,
substantial challenges in circumscribing natural
groups, and limitations in inferring evolutionary
relationships from morphology (Lumbsch & Leavitt
2011; Printzen 2010).
As with other groups of lichen-forming fungi,
creating a robust taxonomy reflecting evolutionary
relationships for members of the family Acarosporaceae has been challenging due, in part, to limited
understanding of character evolution in this group
(Eriksson et al. 2004; Hafellner 1995; Magnusson
1936; Reeb et al. 2004; Westberg et al. 2015). Most
members of Acarosporaceae form crustose, saxicolous thalli and commonly occur in arid habitats
worldwide. Acarosporaceae, as currently circumscribed, includes ten genera – Acarospora, Caeruleum, Glypholecia, Lithoglypha, Myriospora,
Pleopsidium, Polysporina, Sarcogyne, Thelocarpella
and Timdalia (Westberg et al. 2015). In contrast to
most ascomycetous fungi, which typically produce
0007-2745/18/$1.25/0
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121(3): 2018
eight ascospores per ascus, Acarosporaceae includes
species that produce over 100 single-celled spores
per ascus (Reeb et al. 2004; Zahlbruckner 1907).
Based on molecular sequence data, Westberg et
al. (2015) demonstrated that a number of genera in
the Acarosporaceae are not monophyletic as currently circumscribed, e.g., Acarospora, Polysporina
and Sarcogyne. For example, carbonized or melanized ascomata is a highly plesiomorphic trait in the
Acarosporaceae, with Polysporina species nested
within the genus Acarospora sensu Westberg et al.
(2015). Challenges relating to appropriate interpretation of phenotypic variation are not limited to
family- and genus-level concepts but include species-level circumscriptions (Nurtai et al. 2017;
Wedin et al. 2009). Owing in part to different
perspectives on the interpretation of phenotypic
variation in Acarospora, taxonomy and species
circumscriptions within the genus remain unsettled
(Knudsen 2004).
A number of interesting Acarospora collections
have been made in western North America that do
not fit within currently circumscribed species,
including several unusually robust, effigurate lichens
(Fig. 1) found across the Great Basin and on
Colorado Plateau, U.S.A. with superficial similarities
to A. nevadensis H.Magn., A. rosulata (Th.Fr.)
H.Magn. and A. strigata (Nyl.) Jatta. Given the
phenotypic plasticity of Acarospora species in
response to their environment (Weber 1968) and
non-intuitive patterns in character evolution in the
family (Westberg et al. 2015), we used an integrative
taxonomic approach (Yeates et al. 2011) to investigate the placement of some recently collected
specimens within Acarospora. Our results reveal
patterns of apparent convergence of some morphologies traditionally considered a single taxon, coupled
with a striking range of morphological disparity
within other lineages. Based on morphological and
molecular evidence presented here, we formally
describe a new taxon, A. tintickiana sp. nov. and
identify a number of lineages corresponding to new
putative species.
MATERIALS
AND
METHODS
Taxon sampling. Our sampling included a total
of 123 specimens (Supplementary Table S1), all
restricted to the ‘Acarospora’ clade sensu Westberg et
al. (2015). In this study, sequences from the 60
specimens recovered in the ‘Acarospora’ clade from
Westberg et al. (2015) were supplemented with two
A. strigata sequences from GenBank, one sequence
representing both A. tianshanica A.Abbas, L.Nurtai
& K.Knudsen and A. nevadensis, members of the A.
strigata group (Nurtai et al. 2017), and new data
from an additional 59 specimens collected from the
Intermountain Region of western North America.
We maintained the original identifications of
specimens reported previously (Westberg et al.
2015), with the exception of specimen ‘SAR164 0
which was published as A. strigata but subsequently
identified as A. nevadensis. New samples included in
this study were from the Herbarium of NonVascular Cryptogams at Brigham Young University,
Provo, UT, U.S.A. (BRY-C) and J. Hollinger’s private
collection and included: A. americana H.Magn. (4
specimens), A. aff. fuscata (Schrader) Arnold (2), A.
aff. nevadensis (6), A. rosulata (Th.Fr.) H.Magn. (8),
A. schleicheri (Ach.) A.Massal. (2), A. aff. socialis
H.Magn. (4), A. strigata sensu Nurtai et al. (2017)
(22), A. ‘tintickiana’ (10), and Polysporina gyrocarpa
(H.Magn.) N.S.Golubk. (1). Specimens representing
A. rosulata included a number of heavily pruinose
specimens (Fig. 1F), which is uncharacteristic for
this taxon (Fig. 1C). Pruinose A. rosulata specimens
came from two collections made in the Great Basin,
and DNA was extracted from multiple, distinct thalli
from each collection. Acarospora ‘tintickiana’ was
comprised of specimens representing a robust,
effigurate lichen that was initially collected on midelevation limestone strata in the eastern Great Basin,
Utah, U.S.A. and identified as a probable new species
by LLS and CCN. Subsequent collections made
throughout the Great Basin included specimens that
were morphologically similar to the initial collections and tentatively identified as A. ‘tintickiana’
(Fig. 1D). Polysporina simplex ‘C’ was used as the
outgroup in phylogenetic reconstructions (Westberg
et al. 2015).
Morphological and chemical analysis. Morphological characters were assessed using an Olympus
SZH dissecting microscope. Observations and measurements of ascospores were made in water with an
Olympus BH-2 microscope, with multiple ascospores measured from at least two apothecia on each
specimen. Chemical constituents were identified
using thin layer chromatography (TLC), following
standard methods with solvent systems ‘C’ and ‘G’
(Culberson 1972; Orange et al. 2001). Identifications
Leavitt et al.: Acarospora diversity in the Great Basin, U.S.A.
277
of new specimens reported in this study followed
Knudsen (2007a,b) and Nurtai et al. (2017).
Trees were visualized in FigTree v1.4.3 (Rambaut
2006).
Molecular methods. Total genomic DNA was
extracted from new specimens collected for molecular analysis using either the ZR fungal/bacterial
DNA miniprep kit (Zymo Research) or the Wizard
Genomic DNA Purification Kit (Promega). In order
to have sequence data compatible with Westberg et
al. (2015), we attempted to generate molecular
sequence data for four markers: two nuclear
ribosomal loci – a fragment of the gene encoding
for the large-subunit (nuLSU) and the internal
transcribed spacer region (ITS), a fragment of the
gene encoding for the mitochondrial small subunit
(mtSSU), and a fragment from the nuclear proteincoding b-tubulin gene. Primers and polymerase
chain reaction (PCR) amplifications followed Westberg et al. (2015). PCR product purification,
sequencing reactions, and read assembly followed
previously published methods (Leavitt et al. 2013,
2015).
Sequences were aligned using the program
MAFFT v7 (Katoh et al. 2005; Katoh & Toh 2008).
We implemented the G-INS-i alignment algorithm
and ‘1PAM / K¼2 0 scoring matrix, with an offset
value of 0.9, and the remaining parameters were set
to default values for the b-tubulin and nuLSU
markers. For the ribosomal ITS and mtSSU alignments, we used the same parameters, with the
exception of an offset value set to 0.1 rather than 0.9
and the ‘unalignlevel’ set to 0.6.
Phylogenetic relationships were inferred using
maximum likelihood (ML) inference. Exploratory
phylogenetic analyses of individual gene topologies
showed no evidence of well-supported topological
conflict among individual gene topologies (conflicting nodes with 70% bootstrap values; data not
shown). Hence, we chose to infer relationships using
a concatenated gene-tree approach, based on the
complete, four-locus data matrix (n ¼ 123). A ML
topology was reconstructed using the program
RAxML v8.2.10 (Stamatakis 2006; Stamatakis et al.
2008) in the CIPRES Science Gateway server (http://
www.phylo.org/portal2/), treating each locus as a
separate partition and implementing the
‘GTRGAMMA’ model. Nodal support was evaluated
using 1000 bootstrap pseudo-replicates. Exploratory
analyses of alternative partition strategies provided
highly similar topologies and nodal support values.
RESULTS AND DISCUSSION
New sequences generated in association with this
study have been deposited in GenBank under
accession numbers MH553214–MH553221 and
MH555362–MH555430. The complete molecular
data matrix included 2,769 aligned nucleotide
position characters across the four sampled loci
and is available on TreeBase (https://treebase.org/
treebase-web/home.html; Study No. 22510).
Our ML phylogenetic analysis recovered a
number of well-supported clades (bootstrap [BS]
values .70%) within the ‘Acarospora’ clade sensu
Westberg et al. (2015) (Fig. 1A). Relationships were
largely in agreement with a previous study (Westberg
et al. 2015) and are not discussed in detail here, apart
from the placement of newly generated sequences for
this study (new sequences shown in bold text in Fig.
1A). For the sake of communication, we define five
major, well-supported clades within Acarospora –
clades ‘I’ (outgroup), ‘II’, ‘III’, ‘IV’, and ‘V’ (Fig.
1A). All newly sequenced specimens were recovered
only in clades ‘IV’ and ‘V’.
The putative new species Acarospora ‘tintickiana’
was morphologically, anatomically, and phylogenetically distinct from the most closely related congeners. All specimens identified as A. ‘tintickiana’ were
recovered within a single, well-supported monophyletic clade (node ‘D’, Fig. 1A). The large, orbicular
thallus of A. ‘tintickiana’ (Fig. 1D), up to 5 cm
across, and non-carbonized apothecia stand in stark
contrast to the closely related species Polysporina
gyrocarpa (Fig. 1E) – a taxon characterized by a
largely endolithic thallus and apothecia with thick,
fissured, carbonized margins and a carbonized
epihymenium. Acarospora ‘tintickiana’ was also
morphologically and phylogenetically distinct from
all A. aff. rosulata specimens, including heavily
pruinose specimens otherwise morphologically similar to A. rosulata but recovered in a distinct clade,
closely related to A. ‘tintickiana’ (node ‘F’, Fig. 1A).
The overall morphological and anatomical
differences separating Acarospora ‘tintickiana’ from
other phenotypically similar species, coupled with
phylogenetic evidence that specimens representing
A. ‘tintickiana’ comprise an evolutionarily independent lineage, distinct from other closely related
lineages, provided compelling evidence that this
278
The Bryologist
121(3): 2018
Figure 1. Phylogenetic relationships and morphological variation in Acarospora species from western North America. A. Phylogenetic tree depicting
phylogenetic relationships of Acarospora based on ITS, nuLSU, mtSSU and nuLSU rDNA sequences. Bootstrap support (BS) values above 50% are
displayed at nodes; and nodes recovered with .70% BS support are indicated by thickened branches. Specimens sequenced and reported for the first time
for this study are shown in bold text. New or candidate species are shown in colored text. Labels at nodes correspond to results and discussion presented
Leavitt et al.: Acarospora diversity in the Great Basin, U.S.A.
putative species merits formal recognition as a
distinct species. Therefore, A. tintickiana sp. nov. is
formally described below. In addition to diagnostic
phenotypic characters (see species description), A.
‘tintickiana’ can be consistently identified based on
fixed, diagnostic nucleotide position characters in
alignments of the ITS region, the official barcoding
marker for fungi (Table 1).
Pruinose Acarospora aff. rosulata specimens were
all recovered within a single, well-supported clade –
node ‘F’ – and only distantly related to typical A.
rosulata specimens – node ‘C’ (Fig. 1A). Specimens
comprising clade ‘F’ are provisionally called A.
‘pruinorosulata’ nom. prov. here and clearly represent
a species-level lineage distinct from A. rosulata sensu
stricto. Furthermore, the clade comprised of A.
‘pruinorosulata’ nom. prov. specimens was phylogenetically distinct from other closely related species –
A. tintickiana sp. nov. and P. gyrocarpa. Currently, A.
‘pruinorosulata’ nom. prov. is known from only two
distinct populations in the Great Basin, U.S.A.
Ongoing investigations aim to identify additional
populations and more fully characterize the range of
variation in members belonging to this species-level
lineage. Therefore, at this point we do not propose
formal taxonomic recognition pending additional
sampling. We anticipate that continuing lichenological investigation may reveal a wide regional
distribution for A. ‘pruinorosulata’ nom. prov. in
the deserts and semiarid woodlands of the Great
Basin.
Gyrophoric acid appeared to be produced in
higher concentrations in Acarospora ‘tintickiana’
than in the closely related lineage A. ‘pruinorosuata’
nom. prov. (Supplementary Figs. S1 & S2). Furthermore, a number of unidentified compounds
were observed in many A. ‘tintickiana’ specimens but
not in those representing A. ‘pruinorosuata’ nom.
prov. (Supplementary Figs. S1 & S2), although it is
unclear if these compounds are also found in A.
‘pruinorosuata’ nom. prov. specimens but at lower
concentrations not detectable using TLC.
Acarospora strigata has long been recognized as a
highly variable species (Magnusson 1929; Fig. 2) and
at least nine species are currently recognized as a part
279
of the polyphyletic A. strigata group (Nurtai et al.
2017). The majority of A. strigata s.l. specimens
collected from the Intermountain West were recovered in a single, well-supported clade (BS ¼ 95%) –
the ‘A. aff. strigata’ clade (node ‘B’, Fig. 1A) – along
with previously published sequences from specimens
collected in southern California, Iran and China
(Supplementary Table S1). The ‘A. aff. strigata’
clade also included single specimens representing A.
nevadensis and A. tianshanica, which, in contrast to
A. strigata, produce gyrophoric acid. We note that
the two specimens identified as A. nevadensis and
included in this study were not recovered as
monophyletic, with one specimen belonging to the
‘A. aff. strigata’ clade (node ‘B’, Fig. 1A) and the
second recovered as sister to clade comprised of A.
aff. nevadensis specimens with large orbicular thalli,
rather than the areolate or verruculose thalli in
typical A. nevadensis (node ‘G’, Fig. 1A & G).
Acarospora aff. nevadensis specimens with large
orbicular thalli, were recovered as a distinct,
previously unrecognized species-level clade (node
‘G’, Fig. 1A), provisionally called A. ‘effigurata’ nom.
prov. here – a name derived from the effigurate
thallus of representatives of this lineage. Anatomically, these specimens are similar to A. strigata,
although the production of gyrophoric acid and
distinct thallus morphology easily separate them
from more typical A. strigata specimens.
In one striking case, a collection made on
limestone in southeastern Nevada (Hollinger 10967
[BRY-C]) was initially identified as Acarospora tintickiana. However, DNA sequence data indicated
that that these specimens belonged to the A.
‘effigurata’ clade (node ‘G’, Fig. 1A). Subsequently,
ITS sequence data was extracted from six distinct
thalli, revealing that two thalli were recovered in the
A. ‘effigurata’ clade and the remaining four specimens were, in fact, A. tintickiana (Supplementary
Fig. S3). A posteriori comparisons of these thalli
failed to reveal phenotypic features that separated
specimens that were shown to belong to two distinct
species-level lineages, A. ‘effigurata’ nom. prov. and
A. tintickiana.
in the text. B. Acarospora aff. strigata, Nye Co., Nevada, U.S.A. (Leavitt 16.680). C. Acarospora rosulata, Canyonlands, Utah, U.S.A. (Hollinger 7343b). D.
Acarospora tintickiana sp. nov., White Pine Co., Nevada, U.S.A. (Leavitt 17-556). E. Polysporina gyrocarpa, Canyonlands, Utah, U.S.A. (Hollinger 6404). F.
Acarospora ‘pruinorosulata’ nom. prov., Lincoln Co., Nevada, U.S.A. (Hollinger 16612). G. A. ‘effigurata’ nom. prov., San Juan Co., Utah, U.S.A. (Hollinger
17453). H. A. ‘uintensis’ nom. prov., Summit Co., Utah, U.S.A. (Newberry 1010).
A
A
C
A
A
A
A
–
–
–
–
A
T
–
T
T
T
T
T
C
T
T
T
T
T
T
C
T
C
C
C
C
C
C
T
T
T
C
C
C
C
C
G
G
G
G
G
G
T
G
G
G
G
A
G
A
T
T
C
T
T
C
T
A
A
A
A
A
A
G
C
C
T
C
C
C
C
C
C
C
C
C
C
T
C
C
C
T
C
C
C
A
A
G
G
G
G
G
A
A
A
A
A
A
T
T
T
C
T
T
T
T
C
C
C
T
C
C
C
T
T
T
T
T
T
C
A
A
A
A
A
G
A
C
C
C
T
T
C
C
T
T
T
T
W
C
T
T
G
T
T
Y
T
T
G
G
A
G
G
G
G
C
C
C
C
C
C
T
C
C
C
C
T
C
T
T
T
T
T
T
C
T
T
T
C
T
C
C
C
T
T
T
T
D
A
G
C
C
G
G
R
G
G
T
T
T
T
T
T
C
T
T
T
A
T
T
T
T
C
C
C
C
C
C
T
T
T
C
T
T
–
A
A
A
A
A
G
A
C
C
M
A
A
A
T
‘effigurata’ (5)
nevadensis ’1 0 (1)
‘pruinorosulata’ (5)
rosulata (5)
aff. strigata (26)
tintickiana sp. nov. (10)
‘uintensis’ (2)
A.
A.
A.
A.
A.
A.
A.
7 13 20 23 46 50 52 57 59 61 62 80 86 103 111 118 136 158 173 281 350 371 380 389 429 443 452 471 475 492 502 504 505 508 518
121(3): 2018
Taxon
The Bryologist
Table 1. Diagnostic aligned nucleotide position characters in the fungal barcoding marker, the internal transcribed spacer region (ITS), for species morphologically similar and/or closely related to
Acarospora tintickiana sp. nov., based on the alignment in TreeBase (http://treebase.org/; Study No. 22510). Comparisons of diagnostic ITS characters separating species are made for A. ‘effigurata’ nom. prov.
(clade ‘G’, Fig. 1A), A. nevadensis ‘1 0 (a single specimen, Knudsen 9408), A. ‘pruinorosulata’ nom. prov. (clade ‘F’, Fig. 1A), A. rosulata (clade ‘C’, Fig. 1A), A. aff. strigata (clade ‘B’, Fig. 1A), A. tintickiana sp.
nov. (clade ‘D’, Fig. 1A), and A. ‘uintensis’ nom. prov. (clade ‘H’, Fig. 1A). Numbers in parentheses indicate the number of individuals sampled for the species/candidate species. Acarospora ‘pruinorosulta’
nom. prov. and A. tintickiana sp. nov. comprise a well-supported monophyletic clade, along with Polysporina gyrocarpa; and some forms of A. nevadensis, A. rosulata s.l., and A. strigata may be
morphologically similar to A. tintickiana sp. nov.
280
Two specimens, morphologically similar to
Acarospora strigata sensu Nurtai et al. (2017), were
recovered in clade ‘IV’ an only distantly related
lineage to all other members of the A. strigata group
(Fig. 1A & 1H). Hence, this new lineage was
provisionally named A. ‘uintensis’ nom. prov. here –
a name derived from their geographic origin in the
Uinta Mountain Range in northeastern Utah, U.S.A.
Further distinguishing this clade from other A. aff.
strigata lineages is the fact that A. ‘uintensis’ nom.
prov. specimens were recovered with strong support
(BS ¼ 100%) as sister to a clade comprised of the
yellow-pigmented taxon A. aff. socialis (produce
rhizocarpic acid). Based on current sampling, no
yellow pigmented species are known to occur in
clade ‘V’ where the majority of the members of the
A. strigata group were recovered (Fig. 1A). The two
specimens representing A. ‘uintensis’ nom. prov. were
collected from limestone substratum in a subalpine
zone of the Uinta Mountains. Due to the limited
number of samples – two separate collections from a
single site – we are not pursuing any formal
taxonomic recommendations pending additional
sampling.
Whether Acarospora ‘uintensis’ nom. prov. represents a relatively rare, ecologically specialized
species will require additional sampling of Acarospora aff. strigata across a broad range of habitats,
with a particular emphasis on subalpine to alpine
habitats. Acarospora aff. strigata is not frequently
collected from subalpine habitats in western North
America. Interestingly, the three A. aff. strigata
specimens from alpine habitats included in this
study were all collected from limestone substrates in
the Uinta Mountain Range, with two (Newberry
1010a & 1010b, BRY-C) comprising the ‘A. ‘uintensis’
nom. prov.’ clade and the other (St. Clair 15853, BRYC) recovered within the ‘A. aff. strigata’ clade (Fig.
1A).
Ongoing studies in the Acarospora strigata
group, including additional population and taxon
sampling, will certainly provide an improved
perspective into species circumscriptions in this
fascinating group (Nurtai et al. 2017). Future
phylogenetic and species delimitation research
including representatives of correctly identified
species from the Acarospora strigata group, including
type or topotype specimens, will be essential to avoid
creating additional taxonomic confusion in Acarospora (Knudsen & Morse 2009; Nurtai et al. 2017).
However, our results suggest that some species-level
Leavitt et al.: Acarospora diversity in the Great Basin, U.S.A.
281
Figure 2. Morphological variation in sampled Acarospora strigata group sensu Nurtai et al. (2017). A. Acarospora strigata, Juab Co., Utah, U.S.A. (Leavitt
16-683). B. A. strigata, Emery Co., Utah, U.S.A. (Leavitt 17-001). C. A. strigata, Emery Co., Utah, U.S.A. (Leavitt 17-114). D. A. strigata, Sweetwater Co.,
Wyoming, U.S.A. (Leavitt 16-586). Scale bar: 0.5 mm.
lineages representing members of the A. strigata
group may constitute a single chemically polymorphic species-level lineage, e.g. the ‘A. aff. strigata’
clade (Figs. 1A, 2). However, broader specimen
sampling and species delimitation studies (Leavitt et
al. 2016) will be required to empirically assess species
boundaries in this group.
Similar to previous studies, a number of
traditionally circumscribed species were not recovered as monophyletic in this study. In clade ‘IV’,
Acarospora schleicheri, A. fuscata, A. socialis, Polysporina gyrocarpa, P. simplex and P. subfuscescens
were not recovered as monophyletic in this study, in
addition to the polyphyly of A. strigata (Fig. 1A).
These results highlight the continuing need for a
careful review of currently accepted Acarospora
species. Based on our limited sampling, it appears
that species diversity in Acarospora is likely underestimated, with multiple species hidden within
traditionally circumscribed, nominal taxa (Lumbsch
& Leavitt 2011). With increasing lichenological
research in the Great Basin, distinctive and previously unrecognized Acarospora species are frequently
collected. Ongoing research aims to characterize this
diversity and formally described species new to
science; and we anticipate formal descriptions for A.
‘pruinorosulata’ nom. prov., A. ‘effigurata’ nom. prov.,
and A. ‘uintensis’ nom. prov. pending additional
specimen sampling. In the meantime, results of this
study clearly indicated that A. tintickiana, the only
new taxon formally described here, is distinct from
these other candidate species.
Within Acarospora, patterns of apparent convergence of some morphologies traditionally considered
a single taxon, coupled with a striking range of
morphological disparity within other lineages, appears to limit the utility of phenotype-based species
circumscriptions, requiring careful assessment of
which characters may be appropriate for diagnosing
evolutionarily independent species-level lineages.
Integrative taxonomic approaches (Fujita et al.
2012), coupling molecular data with morphological
282
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121(3): 2018
Figure 3. Acarospora tintickiana sp. nov. A. Habit of Acarospora tintickiana sp. nov., Juab Co., Utah, U.S.A. (HOLOTYPE 33692). B. Close-up of apothecia
in Acarospora tintickiana sp. nov., Juab Co., Utah, USA (HOLOTYPE 33692). C. Typical dense pruina on Acarospora tintickiana sp. nov., Millard Co.,
Utah, U.S.A. (Leavitt 18-178 [BRY-C]). D. Habit of Acarospora tintickiana sp. nov. highlighting range of variation in color, Lincoln Co., Nevada, U.S.A.
(Hollinger 8239 [BRY-C]). Scale bar: 2 mm – panels A & D; 0.5 mm – panel B; and 1 mm – panel C.
and anatomical characters provide a more robust
approach for delimiting species boundaries in this
group. However, even with well-delimited species
boundaries, careful taxonomic revision will be
required to clarify nomenclatural issues and avoid
introducing additional taxonomic problems (Knudsen 2004; Knudsen & Morse 2009; Nurtai et al. 2017).
TAXONOMY
Acarospora tintickiana St. Clair, Newberry &
S.Leavitt, sp. nov.
Fig. 3A–D
MYCOBANK MB 826915
ITS BARCODING SEQUENCE ACCESSION: GenBank Accession No. MH555413 (holotype).
Differs from the closely related, or morphologically
similar, species A. rosulata and A. ‘pruinorosulata’ nom. prov. in having subglobose spores (ca.
4.0 3 2.8 lm), and in having thicker cortex (80160 lm), in addition to being genetically distinct
from other closely related species-level lineages at
fixed nucleotide position characters in a multiple
sequences alignment of the internal transcribed
spacer region (Table 1).
TYPE: U.S.A. UTAH: Tooele Co.: East Tintic Range in
west-central Utah, Black Rock Canyon – a
narrow, west-facing canyon (ca. 40.03478N,
112.20838W) dominated by Artemisia tridentata,
Cercocarpus montanus, Juniperus osteosperma and
Pinus monophylla, conspicuous upon the local
substrate, Gardison Limestone (Lower Mississippian), a dark grey limestone, and lacking from
softer, more friable limestones elsewhere in Black
Rock Canyon – 30 May 1992, BRY-C 33692
(holotype: BRY-C; isotypes: F; URC; and S).
Description. Thallus orbicular, up to 5 cm
across, the center areolate, the margin effigurate.
Areoles up to 1 mm wide, richly fertile, closely
packed, round to irregular, high-convex to hemispheric, sometimes basally constricted, pale to
occasionally dark brown beneath a dense white
Leavitt et al.: Acarospora diversity in the Great Basin, U.S.A.
pruina. Marginal lobes 1–3 (rarely 4) mm long, 1–2
mm wide, sterile, convex, dichotomous, the tips
closely contiguous, usually ca. 1 mm wide, brownish,
weakly pruinose. Pruina dense and often prominently cracked over the areoles, thinner over the
marginal lobes, very thin or lacking over the lobe
tips. Upper cortex 80–160 lm thick, thinner towards
the thallus center, cells rounded, 3.5–5.5 lm,
syncortex absent; algal layer 100–140 lm, photobiont cells 12–16(25) lm; medulla solid, 250–340
lm, thinner towards the margin. Apothecia abundant, often heaped together in the thallus center, 1–2
mm wide; thalloid margin high, prominent, often
somewhat arching over and obscuring the disc; disc
concave, black, subnitid, faintly pruinose to epruinose. Amphithecial cortex 80–100 (180) lm thick;
hypothecium hyaline; hymenium hyaline, 90–120
(150) lm; subhymenium 65–90 lm; paraphyses
septate, sparsely anastomosing, 2–3.3 lm, slightly
swelling apically; epithecium brown; hymenium is
hemiamyloid (Iþ blue rapidly turning red) and
subhymenium is amyloid (Iþ persistent blue). Asci
clavate, 75–100 3 20–35 lm; spores numerous per
ascus, simple, hyaline, subglobose, (3.4)4.060.4(5.6)
3 (2.5)2.860.3(4.0) lm (N¼140 spores from 7
specimens, with extreme values in parentheses);
conidia broadly ellipsoid, 3.260.5 3 1.960.2 lm
(N¼48 conidia from 5 specimens).
Chemistry. Spot tests: cortex KOH–, Cþ rose,
KCþ rose; medulla KOH–, Cþ rose, KCþ rose. Major
secondary metabolite: gyrophoric acid (Supplementary Figs. S1 & S2).
Substrate and ecology. Occurring on hard
limestone in deserts and semiarid woodlands of the
Great Basin of western North America (Supplementary Table S1). Frequently associated lichens included Acarospora aff. strigata, Aspicilia determinata,
Caloplaca atroalba, C. saxicola, Candelariella rosulans, Myriolecis crenulata, Psora tuckermanii, Rinodina bischoffii, Russavskia elegans, Staurothele
drummondii and Xanthomendoza trachyphylla.
Etymology. The epithet ‘‘tintickiana’’ refers to
Tintick, a member of the ‘‘Timpanogos’’ Ute people,
the namesake of mountain range in which this
species was first found, the East Tintic Range, Tooele
Co., Utah, U.S.A.
Additional specimens examined. U.S.A., NEVADA: Churchill County, Sand Springs Range, J.
Hollinger 11725 (BRY-C); Lander County, Humboldt
Range, J. Hollinger 8239 (BRY-C) & J. Hollinger 15901
283
(Hollinger personal herbarium); Lincoln County,
Golden Gate Range, J. Hollinger 10967A, 10967B,
10967C & 10967F (BRY-C); Lincoln County, Groom
Range, J. Hollinger 12029 (Hollinger personal
herbarium); Lincoln County, Highland Peak, J.
Hollinger 12665 (BRY-C); Lincoln County, Worthington Range, J. Hollinger 12175 (Hollinger personal
herbarium), J. Hollinger 12183 (Hollinger personal
herbarium) & J. Hollinger 13477 (BRY-C); Lincoln
County, Mormon Mountains, J. Hollinger 16894
(Hollinger personal herbarium), with N. Noell;
White Pine County, Snake Range, Leavitt 17-555,
17-556, & 17-563 (BRY-C). UTAH: Millard County,
Fossil Mountain, Leavitt 18-129 (BRY-C); Millard
County, Sawtooth Mountain Leavitt 18-176 (BRY-C).
ACKNOWLEDGMENTS
We thank anonymous reviewers and Dr. James Lawrey (editor) for
valuable comments that improved this manuscript. The study was
financially supported by the M. L. Bean Life Science Museum,
Provo, Utah, U.S.A. Additional fieldwork was supported by the
Bureau of Land Management Nevada State Office through an
Assistance Agreement with the Nevada Department of Wildlife and
The Great Basin Institute. We thank Kerry Knudsen for invaluable
discussion and insight regarding the interpretation of Acarospora
diversity in western North America. We would like to recognize
Todd Trapp (former Wildlife Biologist, Bureau of Land Management, Caliente Nevada Field Office) for his visionary support of
lichen research in the Great Basin. We are also grateful to Gretchen
Baker (Great Basin National Park) and Bradley Kropp (Utah State
University) for organizing a BioBlitz in Great Basin National Park
that resulted in new collections of A. tintickiana.
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Supplementary documents online:
Supplementary Table S1. A list of sampled
specimens included in the molecular phylogeny.
Newly produced sequences are shown in bold. For
most specimens sampled in previous studies, the
nuLSU shares the identical GenBank accession
number with the ITS.
Supplementary Figure S1. Results of thin-layer
chromatography (TLC) comparing Acarospora tintickiana, A. ‘pruinorosulata’ nom. prov. and A. aff.
nevadensis specimens. A. Plate visualized under white
light. B. Plate visualized under UV light. The control
was Xanthoparmelia chlorochroa; and plates were run
in solvent system ‘C’ (toluene / acetic acid [170 : 30]).
Supplementary Figure S2. Results of thin-layer
chromatography (TLC) comparing Acarospora tin-
285
tickiana, A. ‘pruinorosulata’ nom. prov. and A. aff.
nevadensis specimens. A. Plate visualized under
white light. B. Plate visualized under UV light. The
control was Xanthoparmelia chlorochroa; and plates
were run in solvent system ‘G’ (toluene / ethyl
acetate / formic acid [139 : 83 : 8]).
Supplementary Figure S3. Mixed collection of
morphologically similar species/species-level lineages
representing A. ‘effigurata’ nom. prov. and A.
tintickiana sp. nov. collected in Golden Gate Range
in south-central Nevada, U.S.A. In this collection
(Hollinger 10967 [BRY-C]), two thalli, labeled ‘D-ef’
and ‘E-ef’ were recovered in the A. ‘effigurata’ clade
(see Fig. 1); and the remaining four specimens were
A. tintickiana.