2. diagnosis of plant problems
biotic abiotic
physical
chemical
mechanical
pathogenic:
1. fungal
2. bacterial
3. viral
4. nematode
insect/mite:
1. feeding habit
2. life “cycle”
“macro” organisms
3. Effects of diseases of vegetable
seed crops
• yield loss
• infection of harvested seed
• reduction in seed germination &
vigor
• seed transmission of pathogen(s) to
new crops
4. Classes of seedborne microorganisms
1. Infected seed = primary inoculum
source. If seed infection is controlled,
the disease is controlled
3. Important crop pathogen, but infected
seed = minor source of inoculum
5. Seedborne microorganisms never
demonstrated to cause disease
7. Pathogens that infect seed in fields or
in storage, and reduce seed quality
9. Disease management in seed crops
• cultural practices
• chemical applications, seed treatments
• disease resistance
10. Disease management in seed crops:
Cultural practices
• Crop rotation
• Elimination of alternative hosts
• Destruction of inoculum in the field
• Control of insect vectors
• Irrigation practices
• Planting practices
• Ventilation of seed crops
• Fertilizer programs
• Transplanting
• Harvesting
• Geographical location
11. Disease management in seed crops:
Cultural practices
Crop rotation
• non-host, resistant, or ‘antagonistic’ crops
• duration dependent on pathogen host range,
foliar vs. soilborne pathogens,
longevity of inoculum survival,
resistance of cultivar or parent lines
cultural practices, etc.
• be aware of asymptomatic hosts
Elimination of alternative hosts
• weeds
• volunteers
• adjacent crops
13. Biomass (g/0.15 m2) of weeds and spinach seed
crop on 6/13/03 following incorporation of mustard
cover crops
12
10
8
6
4
2
0
Metam
sodium
B. juncea B. juncea +
B. hirta
Mustard
seedmeal
Winter
wheat
Weeds Spinach crop
a
b
b
b b
14. % weed control of shepherd’s purse &
lambsquarters on 6/13/03, using mustard cover
crops prior to spinach seed production
90
80
70
60
50
40
30
20
10
0
Metam
sodium
B. juncea B. juncea +
B. hirta
Mustard
seedmeal
Winter
wheat
Shepherds purse Lambs-quarters
a
ab
abc
bc
c
z
z
z z
z
15. Disease management in seed crops:
Cultural practices
Destruction of inoculum in the field
• remove, or reduce, amount of infected debris
or remaining seed after harvest
• reduce inoculum of soilborne pathogens
• burn stubble/debris
• vacuum fields
• fumigation (synthetic, biofumigation)
• soil solarization
• incorporate infested debris into the soil
16. Overwintering of spinach leaf spot fungi in
western Washington
Cladosporium variabile on
volunteer spinach
Stemphylium botryosum on
spinach seed stalk debris
18. Disease management in seed crops:
Cultural practices
Irrigation practices
• reduce duration of leaf wetness, splash
dispersal, relative humidity
• e.g., drip vs. furrow vs. overhead irrigation
• economics, practicality?
• timing of irrigation
19. Incidence of plants on which Xanthomonas campestris pv. carotae was
detected in drip vs. overhead-irrigated sections of 4 carrot seed
OK
OK-drip
OL
OL-drip
OM
OM-drip
ON
ON-drip
Aug-03
Jun-03
Apr-03
14
12
10
6
4
2
0
8
16
Incidence (of 20 plants sampled)
crops in central Oregon, 2002/03
20. Disease management in seed crops:
Cultural practices
Planting practices
• planting date selected to escape inoculum
- insect vectored pathogens
- pathogens that don’t overwinter in the region
• planting date selected for unfavorable conditions for
pathogens &/or favorable for crop
• row spacing, plant spacing
• row orientation
Ventilation practices
• thinning
• canopy management for maximum air circulation
22. Disease management in seed crops:
Cultural practices
Transplanting & hygiene
• avoid mechanical injury during transplanting
• avoid dipping transplants in water
• mechanical transmission of pathogens by
workers:
- Septoria apiicola in celery
- Xanthomonas campestris pv. campestris
in cabbage
- tobacco mosaic virus (TMV) transmission
on hands of smokers
23. Disease management in seed crops:
Cultural practices
Geographical location
• continental level: grow seed crops in environments
unfavorable for disease
- bean seed in ID & CA to avoid bacterial blights
& anthracnose
- pea seed ID, WA, CA to avoid Pseudomonas pisi
& Ascochyta blight
- crucifer seed in WA to avoid blackleg & black
rot
- sweet corn seed in ID & WA to avoid Fusarium
ear rots
• local level: avoid frost pockets, areas prone to fogs or
dews
25. 2000/01 Brussels sprouts seed crop fungicide trial
White mold (Sclerotinia sclerotiorum)
du Toit & Derie, 2002. Fungicide & Nematicide Tests 57:V013
a a
100.0
90.0
80.0
70.0
60.0
50.0
40.0
30.0
20.0
10.0
0.0
Control Pristine
(BAS516)
Elevate Serenade Rovral/Bravo Switch
Incidence on 07/01/01 (% infected plants)
a
c
c
b b
b
26. 2002/03 Cabbage fungicide trial
White mold (Sclerotinia sclerotiorum)
du Toit & Derie, 2004. Fung. & Nem. Tests 59:submitted
a
ab
bc
bcd
cd cd
cd cd cd cd
cd
d
Incidence of plants with white mold (%)
27. In vitro efficacy of fungicides against Botrytis aclada,
causal agent of neck rot/scape blight of onions
6 days after plating on fungicide-amended agar
Colony diameter (mm)
aab
abc
f
bc
f
cd
d
e
e
fg
ghh
h hh hh h
h hh hh hh hh hh hh hh hh
28. In vitro efficacy of fungicides against Botrytis
aclada (7 days after plating on fungicide-amended agar)
29. Methods of seed treatment
• physical
• chemical
• biological
30. Physical seed treatments
• hot water
- kill pathogens, not damage seed
- Phoma lingam and Xanthomonas
campestris pv. campestris on cabbage seed
exposed to hot water at 50C for 30
minutes
• hot dry air
• aerated steam
• microwaves
• others, e.g., cathode rays, ultrasound
31. Chemical seed treatments
• chlorine = surface disinfestation
e.g., Xanthomonas campestris pv. carotae
on carrot seed
• fungicides – various products, but few
qualify for organic production
• insecticide seed treatments for vector
control (e.g., Gaucho), but few organic
Biological seed treatments
• problems with consistency, few available
• e.g.- Bacillus subtilis = Kodiak, HiStick N/T
- Burkholderia cepacia = Deny
32. Efficacy of treatment with chlorine on
eradication of seedborne inoculum of spinach
leaf spot fungi
Duration in Stemphylium Cladosporium
NaOCl
(% of seed infected/infested)
(minutes)
%
NaOCl
1.2%
0.0 54.75 55.00
10.0 23.25 0.50
20.0 16.75 1.00
30.0 19.00 0.25
40.0 18.25 0.25
33. Disease management during
harvest, storage & conditioning of
seed
• adjustment & manipulation of equipment
to remove pathogen structures from
seed lots (sclerotia, teliospores, etc.)
• controlled storage conditions to avoid
development of storage molds
34. Disease management practices in
production crops
• cultural practices to minimize impact of
seed- or soilborne pathogens
• seed treatments to minimize transmission
of pathogens
• test seed to ensure infection levels lower
than inoculum threshold that can
cause disease
35. Criteria for development/use of
inoculum thresholds for seedborne
pathogens
• suitable seed health assay
• incidence of infection on seeds correlated with
plant infection
• inoculum thresholds established by appropriate
statistical analysis, e.g.:
- X. campestris pv. campestris of
crucifers
- X. campestris pv. carotae on carrots in CA
- lettuce mosaic virus
36. Methods for seed health testing
• field inspections
• direct visual examination
• incubation
• grow-out
• indicator tests
• serological
• DNA hybridization
Reasons for seed health testing
• determine whether infection is below threshold
• for quarantine or phytosanitary certification
• to determine plant stand/health
37. Small-seeded vegetable seed crops
grown in semi-arid regions of the
PNW
Umbelliferous seed crops
carrot, coriander, dill, parsley, parsnip, …
Cruciferous seed cops
radish, daikon, turnip, kale, collard,
kohlrabi, Chinese kale, Chinese mustard, …
Allium seed crops
onion, leek, chives, …
Others
50. Management of bacterial blight in
carrot seed crops
• pathogen-free seed or stecklings
• avoid overhead irrigation, where possible
• crop rotation
• plow or disc infested residues
• isolation from carrot root crops, seed crops
• copper applications, chlorine?, compost teas??
• hot water seed treatment @ 122oF for 30 min
• chlorine seed treatment (surface efficacy)
51. Management of Alternaria leaf
blight in carrot seed crops
• disease-free seed & stecklings
• minimum 2-3 year crop rotation
• plow or disc infested residues
• fungicides
- coppers
- Bravo, Terranil (chlorothalonil)
- Quadris
- Rovral (foliar & seed treatment)
- applications based on disease severity
- new fungicides: Cabrio, Pristine, Folicur, …?
• seed treatments
- thiram, Rovral, Maxim, hot water, chlorine
52. Management of black rot in
carrot seed crops
• disease-free seed, stecklings
• 8+ year crop rotation
• plow or disc infested residues
• avoid overhead irrigation, where possible
• resistance
• fungicides
- coppers
- Rovral 4F (foliar, seed treatment)
- new (Maxim, Quadris, Pristine, …)
• seed treatments
- hot water @ 122oF for 30 min
- hot chlorine (0.1-1.0% @ 122oF for 30 min)
57. Phytoplasmas in seed crops
• leafhopper transmitted
• more prevalent after mild winters
• isolate from alternative & weedy hosts (?)
Aster yellows/BLTVA: onion, Umbelliferous
crops, Cruciferous crops, tomato, lettuce, many
weeds, some ornamentals
• insecticides for leafhopper control
- variable efficacy
- timing relative to leafhopper migration
60. Beet Curly Top Virus (BCTV) in
seed crops
• beet leafhopper
• more prevalent after mild winters
• extensive host range
- mustards, in perennial or winter annual weeds
• insecticides for leafhopper control
- variable efficacy
- timing relative to leafhopper migration
• resistance (?)
68. Iris yellow spot virus (IYSV) in
Allium seed crops
• onion thrips, not Western flower thrips
• not known to be seedborne, nor present in bulbs
• can cause significant yield losses (bulb & seed crops)
• range from symptomless to striking
• host range
onion, garlic, leek, chive, iris, Nicotiana
benthamiana & N. rustica, Datura stramonium
• Brazil, Israel, Holland, US – western states
69. Diseases of small-seeded vegetable
seed crops
Crucifer seed crops in semi-arid PNW
• viruses/BLTVA
• white rust
• powdery mildew
• Alternaria leaf/pod spot
• white mold
• damping-off/seedling blight fungi
(Rhizoctonia, Aphanomyces, Pythium)
• black leg??
93. Alternaria leaf/pod spot of crucifers
Alternaria
brassicicola
smaller spores in chains, no beak
Photo from R.L. Gabrielson
Alternaria brassicae
larger spores, not in chains, long beak
beak
conidiophore
95. Alternaria leaf/pod spot of crucifers:
Alternaria brassicicola & A. brassicae
chains of conidia
of A. brassicicola
96. Ring spot of crucifers:
Mycosphaerella brassicicola
Photos by L.J. du Toit
Photo from R.L. Gabrielson
97. Ring spot of crucifers:
Mycosphaerella brassicicola
Photo from R.L. Gabrielson
98. sterile spermagonia
& “conidia”
Ring spot of crucifers:
Mycosphaerella brassicicola
Drawings from CMI
Descriptions of
Pathogenic Fungi &
Bacteria No. 468 perithecium with
asci & ascospores
ascus &
ascospores
99. Black leg of crucifers:
(Phoma lingam, sexual stage = Leptosphaeria maculans)
asci & ascospores
Drawings from CMI
Descriptions of
Pathogenic Fungi &
Bacteria No. 331
conidia ascospores
pycnidium with conidia
perithecium with asci & ascospores
100. Alternaria leaf/pod spot & ring spot
of crucifers
Alternaria leaf/pod spot
Black circular - irregular lesions;
necrotic center; black spots on
pods & racemes
Naked spores
Ring spot
Circular lesions, definite
margin & chlorotic halo,
concentric zonation;
lowest leaves
Symptoms
Seedborne +
-
Dispersal Wind, insects
Splashing water, insects
Overwinter Debris, biennial seed crops
Debris, biennial seed crops
Favorable conditions Moist, warm
Moist, cool
Host range Crucifers, beet
Crucifers
Black pycnidia &/or perithecia
in concentric rings
Spores in leaf spots
101. Black rot of crucifers:
Xanthomonas campestris pv. campestris
102. Black rot of crucifers:
Xanthomonas campestris pv. campestris
103. Black rot of crucifers:
Xanthomonas campestris pv. campestris
Photos from R.L. Gabrielson
131. Spinach wilt:
Fusarium oxysporum vs. Verticillium dahliae
Fusarium wilt
Any stage in
development
General wilting,
flaccid, off-green,
death
Verticillium wilt
Only after bolting &
initiation of seed set
Oldest leaves 1st,
initial interveinal chlorosis,
then necrosis
Symptoms
Foliar symptoms
Reddening of stem + +
External root Black None/Light brown
discoloration
Vascular discoloration Black Light brown
Seedborne/transmitted +/+ +/+
Host range Chenopodiaceae Broad
Host resistance + ?
132. Verticillium wilt:
Verticillium dahliae & V. albo-atrum
Crucifer hosts:
Susceptible = cauliflower, Brussels sprouts, cabbage
Resistant = broccoli, mustards
Chenopod. hosts:
Spinach, beets, chard
Other hosts:
Numerous! Dependant on
vegetative compatibility
group (VCG)
139. Virus diseases of spinach:
Cucumber mosaic virus (CMV)
crown leaves narrow, curled, wrinkled, margins roll in
leaves yellow and die
stunting
symptoms develop faster at high temperatures
aphid transmitted
overwinters in perennial weeds, builds up in vegetables
(especially cucurbits)
spread by many aphids
146. Virus diseases of beet & chard:
Rhizomania
Photos provided by R.T. Lewellen
147. Virus diseases of beet & chard:
Rhizomania
root stunting, proliferation, vascular discoloration
upright, yellow leaves, proliferation of leaves
distinct veinal yellowing is rare but diagnostic
wilting in higher temperatures
vectored by the soilborne fungus, Polymyxa betae
vector favored by saturated soils
spreads in infected soil, on plants
vector survives in soils >10 years
potential yield loss is high
found in sugarbeet fields along Columbia River in 2000
concern re. table beet seed industry in PNW
148. Some other viruses of spinach, beet & chard
Photos provided by R.T. Lewellen
Beet chlorosis virus (BChV)
- non-persistent aphid vector
-interveinal yellowing
Beet curly top virus (BCTV)
-beet leafhopper vector
-very broad host range
- stunting, hairy roots, thickened
& rolled leaves
149. Monitoring diseases
• appearance/development
• threshold populations
• need for control
• effectiveness of actions