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Diseases iinn VVeeggeettaabbllee 
SSeeeedd CCrrooppss:: 
IIddeennttiiffiiccaattiioonn,, BBiioollooggyy 
&& MMaannaaggeemmeenntt 
LLiinnddsseeyy dduu TTooiitt 
WWaasshhiinnggttoonn SSttaattee UUnniivveerrssiittyy 
MMoouunntt VVeerrnnoonn RReesseeaarrcchh && EExxtteennssiioonn UUnniitt
diagnosis of plant problems 
biotic abiotic 
physical 
chemical 
mechanical 
pathogenic: 
1. fungal 
2. bacterial 
3. viral 
4. nematode 
insect/mite: 
1. feeding habit 
2. life “cycle” 
“macro” organisms
Effects of diseases of vegetable 
seed crops 
• yield loss 
• infection of harvested seed 
• reduction in seed germination & 
vigor 
• seed transmission of pathogen(s) to 
new crops
Classes of seedborne microorganisms 
1. Infected seed = primary inoculum 
source. If seed infection is controlled, 
the disease is controlled 
3. Important crop pathogen, but infected 
seed = minor source of inoculum 
5. Seedborne microorganisms never 
demonstrated to cause disease 
7. Pathogens that infect seed in fields or 
in storage, and reduce seed quality
inoculation 
penetration 
infection & 
colonization 
survival pathogen 
dissemination 
life 
cycle 
growth & 
reproduction
infection 
seed transmission 
production 
crop 
disease development 
survival 
seedborne 
disease 
cycle 
seed crop 
seed storage 
& conditioning 
seed or 
production 
crop
pathogen 
environment 
disease 
host
pathogen 
environment 
host
Disease management in seed crops 
• cultural practices 
• chemical applications, seed treatments 
• disease resistance
Disease management in seed crops: 
Cultural practices 
• Crop rotation 
• Elimination of alternative hosts 
• Destruction of inoculum in the field 
• Control of insect vectors 
• Irrigation practices 
• Planting practices 
• Ventilation of seed crops 
• Fertilizer programs 
• Transplanting 
• Harvesting 
• Geographical location
Disease management in seed crops: 
Cultural practices 
Crop rotation 
• non-host, resistant, or ‘antagonistic’ crops 
• duration dependent on pathogen host range, 
foliar vs. soilborne pathogens, 
longevity of inoculum survival, 
resistance of cultivar or parent lines 
cultural practices, etc. 
• be aware of asymptomatic hosts 
Elimination of alternative hosts 
• weeds 
• volunteers 
• adjacent crops
Evaluation of mustard vs. winter wheat cover crops in spinach seed production
Biomass (g/0.15 m2) of weeds and spinach seed 
crop on 6/13/03 following incorporation of mustard 
cover crops 
12 
10 
8 
6 
4 
2 
0 
Metam 
sodium 
B. juncea B. juncea + 
B. hirta 
Mustard 
seedmeal 
Winter 
wheat 
Weeds Spinach crop 
a 
b 
b 
b b
% weed control of shepherd’s purse & 
lambsquarters on 6/13/03, using mustard cover 
crops prior to spinach seed production 
90 
80 
70 
60 
50 
40 
30 
20 
10 
0 
Metam 
sodium 
B. juncea B. juncea + 
B. hirta 
Mustard 
seedmeal 
Winter 
wheat 
Shepherds purse Lambs-quarters 
a 
ab 
abc 
bc 
c 
z 
z 
z z 
z
Disease management in seed crops: 
Cultural practices 
Destruction of inoculum in the field 
• remove, or reduce, amount of infected debris 
or remaining seed after harvest 
• reduce inoculum of soilborne pathogens 
• burn stubble/debris 
• vacuum fields 
• fumigation (synthetic, biofumigation) 
• soil solarization 
• incorporate infested debris into the soil
Overwintering of spinach leaf spot fungi in 
western Washington 
Cladosporium variabile on 
volunteer spinach 
Stemphylium botryosum on 
spinach seed stalk debris
Survival of Stemphylium botryosum on spinach 
debris: Surface vs. buried debris
Disease management in seed crops: 
Cultural practices 
Irrigation practices 
• reduce duration of leaf wetness, splash 
dispersal, relative humidity 
• e.g., drip vs. furrow vs. overhead irrigation 
• economics, practicality? 
• timing of irrigation
Incidence of plants on which Xanthomonas campestris pv. carotae was 
detected in drip vs. overhead-irrigated sections of 4 carrot seed 
OK 
OK-drip 
OL 
OL-drip 
OM 
OM-drip 
ON 
ON-drip 
Aug-03 
Jun-03 
Apr-03 
14 
12 
10 
6 
4 
2 
0 
8 
16 
Incidence (of 20 plants sampled) 
crops in central Oregon, 2002/03
Disease management in seed crops: 
Cultural practices 
Planting practices 
• planting date selected to escape inoculum 
- insect vectored pathogens 
- pathogens that don’t overwinter in the region 
• planting date selected for unfavorable conditions for 
pathogens &/or favorable for crop 
• row spacing, plant spacing 
• row orientation 
Ventilation practices 
• thinning 
• canopy management for maximum air circulation
Brassica seed crop 
ventilation through 
row orientation, row 
spacing, & 
staking/tying
Disease management in seed crops: 
Cultural practices 
Transplanting & hygiene 
• avoid mechanical injury during transplanting 
• avoid dipping transplants in water 
• mechanical transmission of pathogens by 
workers: 
- Septoria apiicola in celery 
- Xanthomonas campestris pv. campestris 
in cabbage 
- tobacco mosaic virus (TMV) transmission 
on hands of smokers
Disease management in seed crops: 
Cultural practices 
Geographical location 
• continental level: grow seed crops in environments 
unfavorable for disease 
- bean seed in ID & CA to avoid bacterial blights 
& anthracnose 
- pea seed ID, WA, CA to avoid Pseudomonas pisi 
& Ascochyta blight 
- crucifer seed in WA to avoid blackleg & black 
rot 
- sweet corn seed in ID & WA to avoid Fusarium 
ear rots 
• local level: avoid frost pockets, areas prone to fogs or 
dews
Disease management in seed crops: 
Chemical applications & seed treatment 
• organic & biological materials 
- e.g., sulfurs, coppers, Serenade, AQ10, 
Contans, … 
- 2002 Plant Health Progress article by 
McSpadden Gardener and Fravel 
- consistency, niche environments? 
- potential phytotoxicity 
• natural plant products 
- oils, plant extracts, compost teas, … 
- reliability, consistency? 
• bicarbonate fungicides 
- powdery mildews
2000/01 Brussels sprouts seed crop fungicide trial 
White mold (Sclerotinia sclerotiorum) 
du Toit & Derie, 2002. Fungicide & Nematicide Tests 57:V013 
a a 
100.0 
90.0 
80.0 
70.0 
60.0 
50.0 
40.0 
30.0 
20.0 
10.0 
0.0 
Control Pristine 
(BAS516) 
Elevate Serenade Rovral/Bravo Switch 
Incidence on 07/01/01 (% infected plants) 
a 
c 
c 
b b 
b
2002/03 Cabbage fungicide trial 
White mold (Sclerotinia sclerotiorum) 
du Toit & Derie, 2004. Fung. & Nem. Tests 59:submitted 
a 
ab 
bc 
bcd 
cd cd 
cd cd cd cd 
cd 
d 
Incidence of plants with white mold (%)
In vitro efficacy of fungicides against Botrytis aclada, 
causal agent of neck rot/scape blight of onions 
6 days after plating on fungicide-amended agar 
Colony diameter (mm) 
aab 
abc 
f 
bc 
f 
cd 
d 
e 
e 
fg 
ghh 
h hh hh h 
h hh hh hh hh hh hh hh hh
In vitro efficacy of fungicides against Botrytis 
aclada (7 days after plating on fungicide-amended agar)
Methods of seed treatment 
• physical 
• chemical 
• biological
Physical seed treatments 
• hot water 
- kill pathogens, not damage seed 
- Phoma lingam and Xanthomonas 
campestris pv. campestris on cabbage seed 
exposed to hot water at 50C for 30 
minutes 
• hot dry air 
• aerated steam 
• microwaves 
• others, e.g., cathode rays, ultrasound
Chemical seed treatments 
• chlorine = surface disinfestation 
e.g., Xanthomonas campestris pv. carotae 
on carrot seed 
• fungicides – various products, but few 
qualify for organic production 
• insecticide seed treatments for vector 
control (e.g., Gaucho), but few organic 
Biological seed treatments 
• problems with consistency, few available 
• e.g.- Bacillus subtilis = Kodiak, HiStick N/T 
- Burkholderia cepacia = Deny
Efficacy of treatment with chlorine on 
eradication of seedborne inoculum of spinach 
leaf spot fungi 
Duration in Stemphylium Cladosporium 
NaOCl 
(% of seed infected/infested) 
(minutes) 
% 
NaOCl 
1.2% 
0.0 54.75 55.00 
10.0 23.25 0.50 
20.0 16.75 1.00 
30.0 19.00 0.25 
40.0 18.25 0.25
Disease management during 
harvest, storage & conditioning of 
seed 
• adjustment & manipulation of equipment 
to remove pathogen structures from 
seed lots (sclerotia, teliospores, etc.) 
• controlled storage conditions to avoid 
development of storage molds
Disease management practices in 
production crops 
• cultural practices to minimize impact of 
seed- or soilborne pathogens 
• seed treatments to minimize transmission 
of pathogens 
• test seed to ensure infection levels lower 
than inoculum threshold that can 
cause disease
Criteria for development/use of 
inoculum thresholds for seedborne 
pathogens 
• suitable seed health assay 
• incidence of infection on seeds correlated with 
plant infection 
• inoculum thresholds established by appropriate 
statistical analysis, e.g.: 
- X. campestris pv. campestris of 
crucifers 
- X. campestris pv. carotae on carrots in CA 
- lettuce mosaic virus
Methods for seed health testing 
• field inspections 
• direct visual examination 
• incubation 
• grow-out 
• indicator tests 
• serological 
• DNA hybridization 
Reasons for seed health testing 
• determine whether infection is below threshold 
• for quarantine or phytosanitary certification 
• to determine plant stand/health
Small-seeded vegetable seed crops 
grown in semi-arid regions of the 
PNW 
Umbelliferous seed crops 
carrot, coriander, dill, parsley, parsnip, … 
Cruciferous seed cops 
radish, daikon, turnip, kale, collard, 
kohlrabi, Chinese kale, Chinese mustard, … 
Allium seed crops 
onion, leek, chives, … 
Others
Diseases of small-seeded vegetable 
seed crops 
Umbelliferous seed crops 
• bacterial blights 
• Alternaria diseases: leaf blight, black rot 
• powdery mildew 
• phytoplasmas: aster yellows, BLTVA 
• viruses: motley dwarf, BCTV, AMV, … 
• root knot nematode 
• cavity spot, bacterial soft rot
Bacterial leaf blight 
Xanthomonas campestris 
pv. carotae
Bacterial blight 
Xanthomonas 
campestris pv. carotae
Alternaria leaf blight 
Alternaria dauci 
HHoowwaarrdd ee tt aall.. ((11999944))
carrot umbel 
infection by 
Alternaria dauci
Cercospora leaf spot 
Cercospora carotae
Alternaria lleeaaff bblliigghhtt 
AAlltteerrnnaarriiaa ddaauuccii 
CCeerrccoossppoorraa lleeaaff ssppoott 
CCeerroossppoorraa ccaarroottaaee 
BBaacctteerriiaall lleeaaff bblliigghhtt 
XXaanntthhoommoonnaass ccaammppeessttrriiss ppvv.. ccaarroottaaee
Black rot 
Alternaria radicina 
HHoowwaarrdd eett aall.. ((11999944)) 
SSnnoowwddoonn ((11999922)) 
SSnnoowwddoonn ((11999922))
Host range 
• Xanthomonas campestris pv. carotae 
carrot 
• Alternaria dauci 
carrot, parsley, Umbelliferous weeds 
• Alternaria radicina 
carrot, celery, parsley, parsnip, dill 
• Cercospora carotae 
carrot, other Daucus species
Incidence of plants on which X. campestris pv. carotae was detected 
in 14 carrot seed crops: WA, 2001/02
Population of X. campestris pv. carotae detected on 
stock seed & harvested seed of carrot seed crops: WA, 2001/02
Sampling debris/dust during threshing of seed crops 
Crop Distance # samples CFU/ft3 
1 100’ 10 13.30 
150’ 7 33.70 
250’ 3 1.80 
2 25’ 4 15.00 
100’ 12 10.40 
150’ 1 0.00 
200’ 8 1.00 
300’ 1 0.00 
800 3 0.00 
3 900’ 8 0.00 
4 ~ 1 mile 5 0.02
Management of bacterial blight in 
carrot seed crops 
• pathogen-free seed or stecklings 
• avoid overhead irrigation, where possible 
• crop rotation 
• plow or disc infested residues 
• isolation from carrot root crops, seed crops 
• copper applications, chlorine?, compost teas?? 
• hot water seed treatment @ 122oF for 30 min 
• chlorine seed treatment (surface efficacy)
Management of Alternaria leaf 
blight in carrot seed crops 
• disease-free seed & stecklings 
• minimum 2-3 year crop rotation 
• plow or disc infested residues 
• fungicides 
- coppers 
- Bravo, Terranil (chlorothalonil) 
- Quadris 
- Rovral (foliar & seed treatment) 
- applications based on disease severity 
- new fungicides: Cabrio, Pristine, Folicur, …? 
• seed treatments 
- thiram, Rovral, Maxim, hot water, chlorine
Management of black rot in 
carrot seed crops 
• disease-free seed, stecklings 
• 8+ year crop rotation 
• plow or disc infested residues 
• avoid overhead irrigation, where possible 
• resistance 
• fungicides 
- coppers 
- Rovral 4F (foliar, seed treatment) 
- new (Maxim, Quadris, Pristine, …) 
• seed treatments 
- hot water @ 122oF for 30 min 
- hot chlorine (0.1-1.0% @ 122oF for 30 min)
Powdery mildew 
Erysiphe heraclei
Powdery mildew in carrot seed crops 
• no yield loss if infection occurs > mid-June, 
otherwise seed yield/quality reduced 
• remove wild/volunteer carrots 
• isolate crops 
• pathogen-free stecklings 
• fungicides: 
- Kaligreen (potassium bicarbonate) 
- sulfurs (e.g., Kumulus DF, Microthiol Disperss) 
- Quadris F 
- AQ10 biofungicide (incompatible with some 
fungicides)
Phytoplasmas 
Aster yellows & 
Beet leafhopper-transmitted 
virescence 
agent (BLTVA)
Aster yellows, 
Beet leafhopper-transmitted 
virescence agent 
(BLTVA)
Phytoplasmas in seed crops 
• leafhopper transmitted 
• more prevalent after mild winters 
• isolate from alternative & weedy hosts (?) 
Aster yellows/BLTVA: onion, Umbelliferous 
crops, Cruciferous crops, tomato, lettuce, many 
weeds, some ornamentals 
• insecticides for leafhopper control 
- variable efficacy 
- timing relative to leafhopper migration
Beet curly top 
virus 
(BCTV) 
beet leafhopper
Beet Curly Top Virus (BCTV) in 
seed crops 
• beet leafhopper 
• more prevalent after mild winters 
• extensive host range 
- mustards, in perennial or winter annual weeds 
• insecticides for leafhopper control 
- variable efficacy 
- timing relative to leafhopper migration 
• resistance (?)
Diseases of small-seeded vegetable 
seed crops 
Allium seed crops 
• gray mold/scape blight/neck rot 
• black mold 
• bacterial soft rots 
• Fusarium basal rot 
• viruses ?? 
iris yellow spot virus = IYSV
Botrytis scape & flower 
blight 
B. allii 
B. squamosa, 
B. cinerea, 
B. byssoidea
Seed-borne 
Botrytis
2001/02 survey of onion seed crops in WA 
Incidence (%) of plants infected with Botrytis allii a 
Visual symptoms Plants sampled in the fieldb 
9/01 11/01 4/02 6/02 7/02 9/01 11/01 4/02 6/02 7/02 
Field & 
irrigation 
A (spr) 5 5 15 100 100 0 0 0 0 7 
B (spr)c 3 0 - - - 0 0 - - - 
C (furr) 15 3 70 100 100 0 0 0 0 16 
D (furr) 8 10 95 100 100 0 0 2 5 10 
E (furr) 63 0 70 100 100 0 0 0 2 10 
F (furr) 8 3 25 100 100 0 0 1 6 7 
G (furr) 18 3 30 95 100 0 0 0 2 4 
H (spr)d - - 65 90 100 - - 0 0 17 
Mean 19.6 3.2 52.9 97.9 100 0.0 0.0 0.4 2.1 8.7 
a 20 or 40 plants sampled randomly per field 
b 100 plants rated for symptoms of neck/bulb rot, scape/umbel blight 
c Crop plowed under in 03/02 
d Bulb-to-seed crop
2001/02 survey of 7 onion seed crops in WA 
Incidence (%) of seed infected/infested with Botrytis spp.a 
Stock seed Harvested seed 
Internalc Externalc 
Internal 
B. allii B. allii B.allii B.porri Aspergillus 
Field & irrigationb 
A (sprinkler) F,M = 0.00 F,M = 0.75 0.25 0.00 55.25 
B (sprinkler) F,M = 0.00 - - - - 
C (furrow) - - 6.00 0.00 33.75 
D (furrow) - - 5.50 0.00 23.00 
E (furrow) 1.50 0.75 28.25 0.00 9.00 
F (furrow) - - 3.75 0.25 48.75 
G (furrow) 3.00 6.75 1.50 0.00 0.75 
H (sprinkler) bulb-to- - - 0.00 0.00 27.75 
seed 
Mean 1.13 2.06 6.46 0.04 28.32 
a 400 seed/field; F = female parent, M = male parent; - = seed unavailable 
b sprinkler = overhead irrigation 
c Internal = 60 sec. rinse in 0.5% NaOCl + triple H2O rinse; External = 60 min. rinse in H2O
Management of Botrytis in 
onion seed crops 
• pathogen-free seed, treated seed 
• fungicides 
seed treatment (hot water, Thiram, Rovral, chlorine) 
foliar sprays (e.g., Rovral, Bravo, Switch) 
new fungicides (Serenade, Switch, Pristine, Endura, 
Botran, …) 
• “healthy” crop 
• sanitation (volunteers, culls, debris) 
• rotation & isolation from other Allium crops 
• well-dried umbels <harvest, artificial drying
Iris yellow spot virus 
IYSV
Iris yellow spot virus (IYSV) in 
Allium seed crops 
• onion thrips, not Western flower thrips 
• not known to be seedborne, nor present in bulbs 
• can cause significant yield losses (bulb & seed crops) 
• range from symptomless to striking 
• host range 
onion, garlic, leek, chive, iris, Nicotiana 
benthamiana & N. rustica, Datura stramonium 
• Brazil, Israel, Holland, US – western states
Diseases of small-seeded vegetable 
seed crops 
Crucifer seed crops in semi-arid PNW 
• viruses/BLTVA 
• white rust 
• powdery mildew 
• Alternaria leaf/pod spot 
• white mold 
• damping-off/seedling blight fungi 
(Rhizoctonia, Aphanomyces, Pythium) 
• black leg??
White rust of radish 
Albugo candida
White rust of radish seed crops 
• light green spots; white, raised blisters 
• abnormal growth on seed stalk (“staghorn”); 
seed may not form 
• seed yield & quality may be reduced severely 
• select isolated fields 
• host range 
radish, rapeseed, mustards (including wild mustard) 
control wild mustards 
• resistance (some daikon cultivars) 
• incorporate debris after harvest 
• fungicides: 
seed treatment - captan, thiram 
at planting – Ridomil Gold
Root rots/damping off of 
Crucifer seed crops 
Aphanomyces, Pythium, 
Fusarium 
• blue-black lesions on roots 
• constricted lesions, sometimes 
girdling 
• discolored radial streaks 
• general root rot, damping-off 
• plant in well-drained soils, 
avoid overwatering 
• > 3 year crop rotation 
• fungicide treatment: e.g., 
Quadris in-furrow or banded
Small-seeded vegetable seed crops 
grown in the maritime coastal region 
of the PNW 
Chenopodiaceous seed crops 
spinach, table beet, Swiss chard 
Cruciferous seed crops 
cabbage, Brussels sprouts, cauliflower, 
Chinese cabbage, … 
Others
Spinach leaf spot fungi: 
Cladosporium leaf spot 
Stemphylium leaf spot 
Anthracnose
SStteemmpphhyylliiuumm 
bboottrryyoossuumm 
CCllaaddoossppoorriiuumm 
vvaarriiaabbiillee 
Photo by M.L. Derie
Pleospora herbarum 
= sexual stage of S. botryosum
Seedborne potential of leaf spot fungi 
Pseudothecia of Pleospora herbarum & 
conidia of Stemphylium botryosum 
Conidiophores & conidia of Cladosporium 
variabile (top right & lower left) 
& a Cladosporium sp. (top left & lower right)
Spinach anthracnose: 
Colletotrichum dematium = C. spinaciae 
Photo by M.L. Derie
Spinach anthracnose: 
Colletotrichum dematium = C. spinaciae 
http://www.hgic.umd.edu/diagn/veg/anthracnose_fruit.html
acervuli 
Spinach anthracnose: 
Colletotrichum dematium 
= C. spinaciae 
setae
conidia 
setae 
Spinach 
anthracnose: 
Colletotrichum 
dematium
Cladosporium leaf spot, Stemphylium leaf 
spot, & anthracnose of spinach 
Cladosporium 
variable 
Distinct, develop 
dark margin 
Spores in lesions + (abundant in 
+ (in acervuli) 
moist 
conditions) 
Stemphylium 
botryosum 
Diffuse, rapidly 
expanding 
Seedborne + 
+ + 
Wind, seed 
Volunteers, seed 
Moist, cool 
Host range > Chenopods? 
Spinach Spinach 
Splashing water, 
seed 
Dispersal Wind, seed 
Seed stalk Volunteers, seed 
debris, seed 
Overwintering 
Moist, warm, Wet, cool 
pollen 
Favorable conditions 
+ (in moist 
conditions) 
Distinct, 
coalesce 
Leaf spot symptoms 
Colletotrichum 
dematium
Beet & chard leaf spot fungi: 
Phoma leaf spot 
Ramularia leaf spot 
Cercospora leaf spot
Phoma leaf 
spot of beets 
& chard: 
Phoma betae 
Barnett & Hunter, 1972
Photo by L.J. du Toit 
Phoma leaf spot of 
beet/chard: 
Phoma betae 
pycnidia 
holdfasts 
on water 
agar
Photo by D.A. Inglis 
Ramularia leaf spot 
of beet & chard: 
Ramularia betae 
Barnett & Hunter, 1972
Cercospora leaf 
spot of 
beet/chard: 
Cercospora 
beticola 
Photos at NDSU website: 
http://www.ext.nodak.edu 
/extpubs/plantsci/rowcro 
ps/pp1244w.htm
Cercospora leaf 
spot of 
beet/chard: 
Cercospora 
beticola 
Cercospora conidia 
http://www.ext.nodak.edu/extpub 
s/plantsci/rowcrops/pp1244w.htm
Cercospora leaf spot, Ramularia leaf spot, and 
Phoma leaf spot of beets/chard 
Cercospora 
beticola 
Circular leaf spots, 
red-brown margin, 
older leaves; 
Crown lesions 
Minute black dots 
(stromata) in spots 
Ramularia 
betae 
Light brown leaf 
spots, angular & 
larger, 
older leaves 
Seedborne + (external) 
+ (?) + 
Dispersal Splashing water, wind, 
Wind Splashing water, insects 
insects 
Overwinter Weeds, debris 
Debris Soil, roots, debris, weeds 
Fav. conditions Warm, moist 
Cool, moist Cool to warm, moist 
Host range Beet, chard, Chenopod. 
Beet, chard Beet, lambsquarter 
weeds 
Silvery gray to 
white in spots 
Black pycnidia in leaf 
spots, on crowns 
Spores in leaf 
spots 
Round leaf spots, 
concentric rings on 
perimeter, dark margin; 
Seedling black leg; 
Crown rot 
Symptoms 
Phoma betae
Crucifer foliar pathogens: 
Alternaria leaf spot 
Ring spot 
Bacterial diseases
Alternaria leaf/pod spot of crucifers: 
Alternaria brassicicola & A. brassicae
Alternaria leaf/pod spot of crucifers 
Alternaria 
brassicicola 
smaller spores in chains, no beak 
Photo from R.L. Gabrielson 
Alternaria brassicae 
larger spores, not in chains, long beak 
beak 
conidiophore
Alternaria leaf/pod spot of crucifers: 
Alternaria brassicicola & A. brassicae
Alternaria leaf/pod spot of crucifers: 
Alternaria brassicicola & A. brassicae 
chains of conidia 
of A. brassicicola
Ring spot of crucifers: 
Mycosphaerella brassicicola 
Photos by L.J. du Toit 
Photo from R.L. Gabrielson
Ring spot of crucifers: 
Mycosphaerella brassicicola 
Photo from R.L. Gabrielson
sterile spermagonia 
& “conidia” 
Ring spot of crucifers: 
Mycosphaerella brassicicola 
Drawings from CMI 
Descriptions of 
Pathogenic Fungi & 
Bacteria No. 468 perithecium with 
asci & ascospores 
ascus & 
ascospores
Black leg of crucifers: 
(Phoma lingam, sexual stage = Leptosphaeria maculans) 
asci & ascospores 
Drawings from CMI 
Descriptions of 
Pathogenic Fungi & 
Bacteria No. 331 
conidia ascospores 
pycnidium with conidia 
perithecium with asci & ascospores
Alternaria leaf/pod spot & ring spot 
of crucifers 
Alternaria leaf/pod spot 
Black circular - irregular lesions; 
necrotic center; black spots on 
pods & racemes 
Naked spores 
Ring spot 
Circular lesions, definite 
margin & chlorotic halo, 
concentric zonation; 
lowest leaves 
Symptoms 
Seedborne + 
- 
Dispersal Wind, insects 
Splashing water, insects 
Overwinter Debris, biennial seed crops 
Debris, biennial seed crops 
Favorable conditions Moist, warm 
Moist, cool 
Host range Crucifers, beet 
Crucifers 
Black pycnidia &/or perithecia 
in concentric rings 
Spores in leaf spots
Black rot of crucifers: 
Xanthomonas campestris pv. campestris
Black rot of crucifers: 
Xanthomonas campestris pv. campestris
Black rot of crucifers: 
Xanthomonas campestris pv. campestris 
Photos from R.L. Gabrielson
Xanthomonas leaf spot of crucifers: 
Xanthomonas campestris pv. armoraciae/raphani
Peppery leaf spot of crucifers: 
Pseudomonas syringae pv. maculicola 
Photos from PetoSeed
Xanthomonas campestris & Pseudomonas syringae 
pathogens of crucifers 
Xanthomonas 
leaf spot 
Xanthomonas 
leaf spot 
Circular, water-soaked leaf spot, chlorotic halo; 
dark lesions on petioles 
- 
Peppery leaf 
spot 
P. s. pv. 
maculicola 
Black rot 
X. c. pv. X. c. pv. raphani X. c. pv. armoraciae 
campestris 
Pathogen 
Symptoms 
Seedborne + 
Dispersal Splashing water, seed, insects 
Overwinter 
Debris, Crucifer weeds, soil 
Favorable Cool to warm, 
Cool, wet 
conditions 
extended wet periods 
Cabbage, broccoli, 
cauliflower, kale, 
radish, horseradish 
Cool to warm, 
extended wet periods 
Cabbage, broccoli, 
cauliflower, kale, 
radish, tomato, pepper 
Yellow leaves, 
wilting, black 
veins 
Warm to hot, 
wet 
Crucifers 
(including 
weeds) 
Cabbage, broccoli, 
cauliflower, Br. 
sprouts, turnip 
Host range 
+ 
Circular to angular 
spots, chlorotic 
halo 
Systemic
Bacterial leaf spot of beet: 
Pseudomonas syringae pv. aptata 
Photos at http://www.ext.nodak.edu/extpubs/plantsci/rowcrops/pp1244w.htm
Pseudomonas leaf spot diseases of 
spinach & beet 
P. syringae pv. 
spinaciae 
Irregular, water-soaked spots; 
older lesions dark brown to 
black, angular; lesions visible 
from top & bottom of leaf 
P. syringae pv. 
aptata 
Circular to irregular leaf 
spots, tan center, dark 
margin; leaf margins; coalesce 
to ragged appearance 
Symptoms 
Seedborne - (?) 
+ 
Splashing water, machinery 
Debris? 
Wet, cool? 
Spinach, others? 
Beet, chard, bean, eggplant, 
lettuce, and pepper 
Host range 
Splashing water, insects, 
machinery 
Dispersal 
Overwinter Debris, 
Favorable Wet, cool 
conditions
White mold: 
Sclerotinia 
sclerotiorum
sclerotia 
Photo by M.L. Derie 
apothecia 
Photo by L.J. du Toit
sclerotium 
& apothecium
asci with ascospores 
ascospores
Sclerotinia sclerotiorum 
• extremely broad host range 
(p. 27 of “2003 PNW Disease Mngmt Hdbk”) 
• long-lived (sclerotia) 
• favorable conditions: 
 extended periods of moist 
conditions 
 high humidity - dense canopy, rain, 
irrigation, dew 
 cool or warm temperatures
Wilt diseases: 
Fusarium oxysporum & 
Verticillium dahliae
Wilt diseases: 
Fusarium osysporum vs. Verticillium 
F. oxysporum 
Soilborne + + 
Seedborne + + 
Host range Narrow (specific) 
Broad 
Survival in soil Long-term 
Long(er)-term 
Warm, “dry” 
Warm, “dry” 
Favorable 
conditions for 
infection/symptoms 
Verticillium
Wilt diseases: 
Fusarium oxysporum 
Asympto-Forma 
specialis Symptomatic host 
matic host 
Spinach 
F. oxysporum Beet 
Spinach 
f. sp. betae 
Swiss chard 
Cabbage (strains 1 & 5) 
Brussels sprout, cauliflower, 
collard, kale, mustards, rape, 
rutabaga, … (strain 1) 
Flowering stock (strains 3 & 4) 
F. oxysporum 
f. sp. conglutinans 
Radish (formerly strain 2 of F. 
oxysporum f. sp. conglutinans) 
F. oxysporum 
f. sp. raphani 
Beet 
Swiss chard 
F. oxysporum 
f. sp. spinaciae
Fusarium wilt of radish: 
F. oxysporum f. sp. raphani
Fusarium wilt of radish: 
F. oxysporum f. sp. raphani
Fusarium wilt of radish: 
F. oxysporum f. sp. raphani 
Photo by D.A. Inglis
Fusarium wilt of spinach: 
F. oxysporum f. sp. spinaciae
Fusarium wilt of spinach: 
F. oxysporum f. sp. spinaciae
Verticillium wilt vs. Fusarium wilt of spinach 
Verticillium wilt 
Fusarium wilt
Verticillium wilt vs. Fusarium wilt of spinach 
Verticillium wilt 
Fusarium wilt
Fusarium wilt Verticillium wilt Control
Systemic infection by Verticillium 
Non-inoculated control Inoculated with V. dahliae
Verticillium wilt vs. Fusarium wilt of spinach 
Verticillium wilt 
Fusarium wilt
Verticillium wilt of spinach
Spinach wilt: 
Fusarium oxysporum vs. Verticillium dahliae 
Fusarium wilt 
Any stage in 
development 
General wilting, 
flaccid, off-green, 
death 
Verticillium wilt 
Only after bolting & 
initiation of seed set 
Oldest leaves 1st, 
initial interveinal chlorosis, 
then necrosis 
Symptoms 
Foliar symptoms 
Reddening of stem + + 
External root Black None/Light brown 
discoloration 
Vascular discoloration Black Light brown 
Seedborne/transmitted +/+ +/+ 
Host range Chenopodiaceae Broad 
Host resistance + ?
Verticillium wilt: 
Verticillium dahliae & V. albo-atrum 
Crucifer hosts: 
Susceptible = cauliflower, Brussels sprouts, cabbage 
Resistant = broccoli, mustards 
Chenopod. hosts: 
Spinach, beets, chard 
Other hosts: 
Numerous! Dependant on 
vegetative compatibility 
group (VCG)
Virus diseases of 
Chenopodiaceous & 
Cruciferous vegetables
Tools & techniques for diagnosis of 
virus diseases 
• symptoms 
• signs 
• virus inclusion bodies - light microscopy 
• virions - electron microscopy 
• host range studies 
• vector transmission evaluations 
• local lesion assays 
• biochemical/physical tests 
• immunological assays – ELISA, immunogold labeling, … 
• molecular (DNA or RNA) assays – PCR
Virus diseases of Crucifers: 
Turnip mosaic virus (TuMV)
Virus diseases of Crucifers: 
Cauliflower mosaic virus (CaMV)
Viruses diseases of Crucifers: 
CaMV vs. TuMV 
CaMV 
Mosaic, veinal chlorosis, 
leaf distortion, premature 
flowering 
Several aphids: e.g., green peach aphid, cabbage aphid 
Vector 
Transmission Non-persistent 
Seedborne - 
Survival Cruciferous weeds 
Crucifers, lettuce, endive, 
spinach, zinnia, petunia, … 
Host range Crucifers only 
Black necrotic ring spots; 
mosaic, leaf distortion, 
necrosis 
Symptoms 
TuMV
Virus diseases of spinach: 
Cucumber mosaic virus (CMV)
Virus diseases of spinach: 
Cucumber mosaic virus (CMV) 
 crown leaves narrow, curled, wrinkled, margins roll in 
 leaves yellow and die 
 stunting 
 symptoms develop faster at high temperatures 
 aphid transmitted 
 overwinters in perennial weeds, builds up in vegetables 
(especially cucurbits) 
 spread by many aphids
Virus yellows of beet 
Host Sheph. Chenop. 
Virus Name Range Purse capitatum 
Closterovirus 
BYV Beet Yellows Virus narrow - + 
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 
Luteovirus 
BWYV Beet Western Yellows Virus wide + - 
BChV Beet Chlorosis Virus narrow - + 
BMYV Beet Mild Yellows Virus intermed. + + 
Table provided by R.T. Lewellen, USDA ARS, Salinas, CA
Virus diseases of beet & chard: 
Beet western yellows virus 
(BWYV)
Virus diseases of beet & chard: 
Beet yellows virus (BYV) 
Photos provided by R.T. Lewellen
Virus diseases of beet & chard: 
Beet mosaic virus (BMV) 
http://www.ipm.ucdavis.edu/PMG/B/D-SB-BMOV-FO.001.html
Important aphid-borne viruses of beets: 
BWYV, BYV, BMV 
BYV 
BWYV 
Interveinal yellowing (older leaves 
first); red-brown spots between veins 
(bronze cast); thick, leathery, brittle 
leaves; poor root growth 
Symptoms 
Vector 
BMV 
Yellow circular spots 
(young leaves); 
puckered leaves with 
mottling; stunting 
Transmission Semi-persistent 
Non-persistent 
Alternative hosts Overwintering seed 
crops, weed hosts 
Mainly 
Chenopodiaceae 
Persistent 
Aphids (many) 
Seedborne - 
Alternative crop 
& weed hosts 
Survival 
Host range Very broad Moderate
Virus diseases of beet & chard: 
Rhizomania 
Beet necrotic 
yellow vein virus 
(BNYVV) 
& 
soilborne fungus 
Polymyxa betae 
Photos provided by R.T. Lewellen
Virus diseases of beet & chard: 
Rhizomania 
Photos provided by R.T. Lewellen
Virus diseases of beet & chard: 
Rhizomania 
 root stunting, proliferation, vascular discoloration 
 upright, yellow leaves, proliferation of leaves 
 distinct veinal yellowing is rare but diagnostic 
 wilting in higher temperatures 
 vectored by the soilborne fungus, Polymyxa betae 
 vector favored by saturated soils 
 spreads in infected soil, on plants 
 vector survives in soils >10 years 
 potential yield loss is high 
 found in sugarbeet fields along Columbia River in 2000 
 concern re. table beet seed industry in PNW
Some other viruses of spinach, beet & chard 
Photos provided by R.T. Lewellen 
Beet chlorosis virus (BChV) 
- non-persistent aphid vector 
-interveinal yellowing 
Beet curly top virus (BCTV) 
-beet leafhopper vector 
-very broad host range 
- stunting, hairy roots, thickened 
& rolled leaves
Monitoring diseases 
• appearance/development 
• threshold populations 
• need for control 
• effectiveness of actions
Diseases in Vegetable Seed Crops

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Diseases in Vegetable Seed Crops

  • 1. Diseases iinn VVeeggeettaabbllee SSeeeedd CCrrooppss:: IIddeennttiiffiiccaattiioonn,, BBiioollooggyy && MMaannaaggeemmeenntt LLiinnddsseeyy dduu TTooiitt WWaasshhiinnggttoonn SSttaattee UUnniivveerrssiittyy MMoouunntt VVeerrnnoonn RReesseeaarrcchh && EExxtteennssiioonn UUnniitt
  • 2. diagnosis of plant problems biotic abiotic physical chemical mechanical pathogenic: 1. fungal 2. bacterial 3. viral 4. nematode insect/mite: 1. feeding habit 2. life “cycle” “macro” organisms
  • 3. Effects of diseases of vegetable seed crops • yield loss • infection of harvested seed • reduction in seed germination & vigor • seed transmission of pathogen(s) to new crops
  • 4. Classes of seedborne microorganisms 1. Infected seed = primary inoculum source. If seed infection is controlled, the disease is controlled 3. Important crop pathogen, but infected seed = minor source of inoculum 5. Seedborne microorganisms never demonstrated to cause disease 7. Pathogens that infect seed in fields or in storage, and reduce seed quality
  • 5. inoculation penetration infection & colonization survival pathogen dissemination life cycle growth & reproduction
  • 6. infection seed transmission production crop disease development survival seedborne disease cycle seed crop seed storage & conditioning seed or production crop
  • 9. Disease management in seed crops • cultural practices • chemical applications, seed treatments • disease resistance
  • 10. Disease management in seed crops: Cultural practices • Crop rotation • Elimination of alternative hosts • Destruction of inoculum in the field • Control of insect vectors • Irrigation practices • Planting practices • Ventilation of seed crops • Fertilizer programs • Transplanting • Harvesting • Geographical location
  • 11. Disease management in seed crops: Cultural practices Crop rotation • non-host, resistant, or ‘antagonistic’ crops • duration dependent on pathogen host range, foliar vs. soilborne pathogens, longevity of inoculum survival, resistance of cultivar or parent lines cultural practices, etc. • be aware of asymptomatic hosts Elimination of alternative hosts • weeds • volunteers • adjacent crops
  • 12. Evaluation of mustard vs. winter wheat cover crops in spinach seed production
  • 13. Biomass (g/0.15 m2) of weeds and spinach seed crop on 6/13/03 following incorporation of mustard cover crops 12 10 8 6 4 2 0 Metam sodium B. juncea B. juncea + B. hirta Mustard seedmeal Winter wheat Weeds Spinach crop a b b b b
  • 14. % weed control of shepherd’s purse & lambsquarters on 6/13/03, using mustard cover crops prior to spinach seed production 90 80 70 60 50 40 30 20 10 0 Metam sodium B. juncea B. juncea + B. hirta Mustard seedmeal Winter wheat Shepherds purse Lambs-quarters a ab abc bc c z z z z z
  • 15. Disease management in seed crops: Cultural practices Destruction of inoculum in the field • remove, or reduce, amount of infected debris or remaining seed after harvest • reduce inoculum of soilborne pathogens • burn stubble/debris • vacuum fields • fumigation (synthetic, biofumigation) • soil solarization • incorporate infested debris into the soil
  • 16. Overwintering of spinach leaf spot fungi in western Washington Cladosporium variabile on volunteer spinach Stemphylium botryosum on spinach seed stalk debris
  • 17. Survival of Stemphylium botryosum on spinach debris: Surface vs. buried debris
  • 18. Disease management in seed crops: Cultural practices Irrigation practices • reduce duration of leaf wetness, splash dispersal, relative humidity • e.g., drip vs. furrow vs. overhead irrigation • economics, practicality? • timing of irrigation
  • 19. Incidence of plants on which Xanthomonas campestris pv. carotae was detected in drip vs. overhead-irrigated sections of 4 carrot seed OK OK-drip OL OL-drip OM OM-drip ON ON-drip Aug-03 Jun-03 Apr-03 14 12 10 6 4 2 0 8 16 Incidence (of 20 plants sampled) crops in central Oregon, 2002/03
  • 20. Disease management in seed crops: Cultural practices Planting practices • planting date selected to escape inoculum - insect vectored pathogens - pathogens that don’t overwinter in the region • planting date selected for unfavorable conditions for pathogens &/or favorable for crop • row spacing, plant spacing • row orientation Ventilation practices • thinning • canopy management for maximum air circulation
  • 21. Brassica seed crop ventilation through row orientation, row spacing, & staking/tying
  • 22. Disease management in seed crops: Cultural practices Transplanting & hygiene • avoid mechanical injury during transplanting • avoid dipping transplants in water • mechanical transmission of pathogens by workers: - Septoria apiicola in celery - Xanthomonas campestris pv. campestris in cabbage - tobacco mosaic virus (TMV) transmission on hands of smokers
  • 23. Disease management in seed crops: Cultural practices Geographical location • continental level: grow seed crops in environments unfavorable for disease - bean seed in ID & CA to avoid bacterial blights & anthracnose - pea seed ID, WA, CA to avoid Pseudomonas pisi & Ascochyta blight - crucifer seed in WA to avoid blackleg & black rot - sweet corn seed in ID & WA to avoid Fusarium ear rots • local level: avoid frost pockets, areas prone to fogs or dews
  • 24. Disease management in seed crops: Chemical applications & seed treatment • organic & biological materials - e.g., sulfurs, coppers, Serenade, AQ10, Contans, … - 2002 Plant Health Progress article by McSpadden Gardener and Fravel - consistency, niche environments? - potential phytotoxicity • natural plant products - oils, plant extracts, compost teas, … - reliability, consistency? • bicarbonate fungicides - powdery mildews
  • 25. 2000/01 Brussels sprouts seed crop fungicide trial White mold (Sclerotinia sclerotiorum) du Toit & Derie, 2002. Fungicide & Nematicide Tests 57:V013 a a 100.0 90.0 80.0 70.0 60.0 50.0 40.0 30.0 20.0 10.0 0.0 Control Pristine (BAS516) Elevate Serenade Rovral/Bravo Switch Incidence on 07/01/01 (% infected plants) a c c b b b
  • 26. 2002/03 Cabbage fungicide trial White mold (Sclerotinia sclerotiorum) du Toit & Derie, 2004. Fung. & Nem. Tests 59:submitted a ab bc bcd cd cd cd cd cd cd cd d Incidence of plants with white mold (%)
  • 27. In vitro efficacy of fungicides against Botrytis aclada, causal agent of neck rot/scape blight of onions 6 days after plating on fungicide-amended agar Colony diameter (mm) aab abc f bc f cd d e e fg ghh h hh hh h h hh hh hh hh hh hh hh hh
  • 28. In vitro efficacy of fungicides against Botrytis aclada (7 days after plating on fungicide-amended agar)
  • 29. Methods of seed treatment • physical • chemical • biological
  • 30. Physical seed treatments • hot water - kill pathogens, not damage seed - Phoma lingam and Xanthomonas campestris pv. campestris on cabbage seed exposed to hot water at 50C for 30 minutes • hot dry air • aerated steam • microwaves • others, e.g., cathode rays, ultrasound
  • 31. Chemical seed treatments • chlorine = surface disinfestation e.g., Xanthomonas campestris pv. carotae on carrot seed • fungicides – various products, but few qualify for organic production • insecticide seed treatments for vector control (e.g., Gaucho), but few organic Biological seed treatments • problems with consistency, few available • e.g.- Bacillus subtilis = Kodiak, HiStick N/T - Burkholderia cepacia = Deny
  • 32. Efficacy of treatment with chlorine on eradication of seedborne inoculum of spinach leaf spot fungi Duration in Stemphylium Cladosporium NaOCl (% of seed infected/infested) (minutes) % NaOCl 1.2% 0.0 54.75 55.00 10.0 23.25 0.50 20.0 16.75 1.00 30.0 19.00 0.25 40.0 18.25 0.25
  • 33. Disease management during harvest, storage & conditioning of seed • adjustment & manipulation of equipment to remove pathogen structures from seed lots (sclerotia, teliospores, etc.) • controlled storage conditions to avoid development of storage molds
  • 34. Disease management practices in production crops • cultural practices to minimize impact of seed- or soilborne pathogens • seed treatments to minimize transmission of pathogens • test seed to ensure infection levels lower than inoculum threshold that can cause disease
  • 35. Criteria for development/use of inoculum thresholds for seedborne pathogens • suitable seed health assay • incidence of infection on seeds correlated with plant infection • inoculum thresholds established by appropriate statistical analysis, e.g.: - X. campestris pv. campestris of crucifers - X. campestris pv. carotae on carrots in CA - lettuce mosaic virus
  • 36. Methods for seed health testing • field inspections • direct visual examination • incubation • grow-out • indicator tests • serological • DNA hybridization Reasons for seed health testing • determine whether infection is below threshold • for quarantine or phytosanitary certification • to determine plant stand/health
  • 37. Small-seeded vegetable seed crops grown in semi-arid regions of the PNW Umbelliferous seed crops carrot, coriander, dill, parsley, parsnip, … Cruciferous seed cops radish, daikon, turnip, kale, collard, kohlrabi, Chinese kale, Chinese mustard, … Allium seed crops onion, leek, chives, … Others
  • 38. Diseases of small-seeded vegetable seed crops Umbelliferous seed crops • bacterial blights • Alternaria diseases: leaf blight, black rot • powdery mildew • phytoplasmas: aster yellows, BLTVA • viruses: motley dwarf, BCTV, AMV, … • root knot nematode • cavity spot, bacterial soft rot
  • 39. Bacterial leaf blight Xanthomonas campestris pv. carotae
  • 40. Bacterial blight Xanthomonas campestris pv. carotae
  • 41. Alternaria leaf blight Alternaria dauci HHoowwaarrdd ee tt aall.. ((11999944))
  • 42. carrot umbel infection by Alternaria dauci
  • 43. Cercospora leaf spot Cercospora carotae
  • 44. Alternaria lleeaaff bblliigghhtt AAlltteerrnnaarriiaa ddaauuccii CCeerrccoossppoorraa lleeaaff ssppoott CCeerroossppoorraa ccaarroottaaee BBaacctteerriiaall lleeaaff bblliigghhtt XXaanntthhoommoonnaass ccaammppeessttrriiss ppvv.. ccaarroottaaee
  • 45. Black rot Alternaria radicina HHoowwaarrdd eett aall.. ((11999944)) SSnnoowwddoonn ((11999922)) SSnnoowwddoonn ((11999922))
  • 46. Host range • Xanthomonas campestris pv. carotae carrot • Alternaria dauci carrot, parsley, Umbelliferous weeds • Alternaria radicina carrot, celery, parsley, parsnip, dill • Cercospora carotae carrot, other Daucus species
  • 47. Incidence of plants on which X. campestris pv. carotae was detected in 14 carrot seed crops: WA, 2001/02
  • 48. Population of X. campestris pv. carotae detected on stock seed & harvested seed of carrot seed crops: WA, 2001/02
  • 49. Sampling debris/dust during threshing of seed crops Crop Distance # samples CFU/ft3 1 100’ 10 13.30 150’ 7 33.70 250’ 3 1.80 2 25’ 4 15.00 100’ 12 10.40 150’ 1 0.00 200’ 8 1.00 300’ 1 0.00 800 3 0.00 3 900’ 8 0.00 4 ~ 1 mile 5 0.02
  • 50. Management of bacterial blight in carrot seed crops • pathogen-free seed or stecklings • avoid overhead irrigation, where possible • crop rotation • plow or disc infested residues • isolation from carrot root crops, seed crops • copper applications, chlorine?, compost teas?? • hot water seed treatment @ 122oF for 30 min • chlorine seed treatment (surface efficacy)
  • 51. Management of Alternaria leaf blight in carrot seed crops • disease-free seed & stecklings • minimum 2-3 year crop rotation • plow or disc infested residues • fungicides - coppers - Bravo, Terranil (chlorothalonil) - Quadris - Rovral (foliar & seed treatment) - applications based on disease severity - new fungicides: Cabrio, Pristine, Folicur, …? • seed treatments - thiram, Rovral, Maxim, hot water, chlorine
  • 52. Management of black rot in carrot seed crops • disease-free seed, stecklings • 8+ year crop rotation • plow or disc infested residues • avoid overhead irrigation, where possible • resistance • fungicides - coppers - Rovral 4F (foliar, seed treatment) - new (Maxim, Quadris, Pristine, …) • seed treatments - hot water @ 122oF for 30 min - hot chlorine (0.1-1.0% @ 122oF for 30 min)
  • 54. Powdery mildew in carrot seed crops • no yield loss if infection occurs > mid-June, otherwise seed yield/quality reduced • remove wild/volunteer carrots • isolate crops • pathogen-free stecklings • fungicides: - Kaligreen (potassium bicarbonate) - sulfurs (e.g., Kumulus DF, Microthiol Disperss) - Quadris F - AQ10 biofungicide (incompatible with some fungicides)
  • 55. Phytoplasmas Aster yellows & Beet leafhopper-transmitted virescence agent (BLTVA)
  • 56. Aster yellows, Beet leafhopper-transmitted virescence agent (BLTVA)
  • 57. Phytoplasmas in seed crops • leafhopper transmitted • more prevalent after mild winters • isolate from alternative & weedy hosts (?) Aster yellows/BLTVA: onion, Umbelliferous crops, Cruciferous crops, tomato, lettuce, many weeds, some ornamentals • insecticides for leafhopper control - variable efficacy - timing relative to leafhopper migration
  • 58. Beet curly top virus (BCTV) beet leafhopper
  • 59.
  • 60. Beet Curly Top Virus (BCTV) in seed crops • beet leafhopper • more prevalent after mild winters • extensive host range - mustards, in perennial or winter annual weeds • insecticides for leafhopper control - variable efficacy - timing relative to leafhopper migration • resistance (?)
  • 61. Diseases of small-seeded vegetable seed crops Allium seed crops • gray mold/scape blight/neck rot • black mold • bacterial soft rots • Fusarium basal rot • viruses ?? iris yellow spot virus = IYSV
  • 62. Botrytis scape & flower blight B. allii B. squamosa, B. cinerea, B. byssoidea
  • 64. 2001/02 survey of onion seed crops in WA Incidence (%) of plants infected with Botrytis allii a Visual symptoms Plants sampled in the fieldb 9/01 11/01 4/02 6/02 7/02 9/01 11/01 4/02 6/02 7/02 Field & irrigation A (spr) 5 5 15 100 100 0 0 0 0 7 B (spr)c 3 0 - - - 0 0 - - - C (furr) 15 3 70 100 100 0 0 0 0 16 D (furr) 8 10 95 100 100 0 0 2 5 10 E (furr) 63 0 70 100 100 0 0 0 2 10 F (furr) 8 3 25 100 100 0 0 1 6 7 G (furr) 18 3 30 95 100 0 0 0 2 4 H (spr)d - - 65 90 100 - - 0 0 17 Mean 19.6 3.2 52.9 97.9 100 0.0 0.0 0.4 2.1 8.7 a 20 or 40 plants sampled randomly per field b 100 plants rated for symptoms of neck/bulb rot, scape/umbel blight c Crop plowed under in 03/02 d Bulb-to-seed crop
  • 65. 2001/02 survey of 7 onion seed crops in WA Incidence (%) of seed infected/infested with Botrytis spp.a Stock seed Harvested seed Internalc Externalc Internal B. allii B. allii B.allii B.porri Aspergillus Field & irrigationb A (sprinkler) F,M = 0.00 F,M = 0.75 0.25 0.00 55.25 B (sprinkler) F,M = 0.00 - - - - C (furrow) - - 6.00 0.00 33.75 D (furrow) - - 5.50 0.00 23.00 E (furrow) 1.50 0.75 28.25 0.00 9.00 F (furrow) - - 3.75 0.25 48.75 G (furrow) 3.00 6.75 1.50 0.00 0.75 H (sprinkler) bulb-to- - - 0.00 0.00 27.75 seed Mean 1.13 2.06 6.46 0.04 28.32 a 400 seed/field; F = female parent, M = male parent; - = seed unavailable b sprinkler = overhead irrigation c Internal = 60 sec. rinse in 0.5% NaOCl + triple H2O rinse; External = 60 min. rinse in H2O
  • 66. Management of Botrytis in onion seed crops • pathogen-free seed, treated seed • fungicides seed treatment (hot water, Thiram, Rovral, chlorine) foliar sprays (e.g., Rovral, Bravo, Switch) new fungicides (Serenade, Switch, Pristine, Endura, Botran, …) • “healthy” crop • sanitation (volunteers, culls, debris) • rotation & isolation from other Allium crops • well-dried umbels <harvest, artificial drying
  • 67. Iris yellow spot virus IYSV
  • 68. Iris yellow spot virus (IYSV) in Allium seed crops • onion thrips, not Western flower thrips • not known to be seedborne, nor present in bulbs • can cause significant yield losses (bulb & seed crops) • range from symptomless to striking • host range onion, garlic, leek, chive, iris, Nicotiana benthamiana & N. rustica, Datura stramonium • Brazil, Israel, Holland, US – western states
  • 69. Diseases of small-seeded vegetable seed crops Crucifer seed crops in semi-arid PNW • viruses/BLTVA • white rust • powdery mildew • Alternaria leaf/pod spot • white mold • damping-off/seedling blight fungi (Rhizoctonia, Aphanomyces, Pythium) • black leg??
  • 70. White rust of radish Albugo candida
  • 71. White rust of radish seed crops • light green spots; white, raised blisters • abnormal growth on seed stalk (“staghorn”); seed may not form • seed yield & quality may be reduced severely • select isolated fields • host range radish, rapeseed, mustards (including wild mustard) control wild mustards • resistance (some daikon cultivars) • incorporate debris after harvest • fungicides: seed treatment - captan, thiram at planting – Ridomil Gold
  • 72. Root rots/damping off of Crucifer seed crops Aphanomyces, Pythium, Fusarium • blue-black lesions on roots • constricted lesions, sometimes girdling • discolored radial streaks • general root rot, damping-off • plant in well-drained soils, avoid overwatering • > 3 year crop rotation • fungicide treatment: e.g., Quadris in-furrow or banded
  • 73.
  • 74. Small-seeded vegetable seed crops grown in the maritime coastal region of the PNW Chenopodiaceous seed crops spinach, table beet, Swiss chard Cruciferous seed crops cabbage, Brussels sprouts, cauliflower, Chinese cabbage, … Others
  • 75. Spinach leaf spot fungi: Cladosporium leaf spot Stemphylium leaf spot Anthracnose
  • 77. Pleospora herbarum = sexual stage of S. botryosum
  • 78. Seedborne potential of leaf spot fungi Pseudothecia of Pleospora herbarum & conidia of Stemphylium botryosum Conidiophores & conidia of Cladosporium variabile (top right & lower left) & a Cladosporium sp. (top left & lower right)
  • 79. Spinach anthracnose: Colletotrichum dematium = C. spinaciae Photo by M.L. Derie
  • 80. Spinach anthracnose: Colletotrichum dematium = C. spinaciae http://www.hgic.umd.edu/diagn/veg/anthracnose_fruit.html
  • 81. acervuli Spinach anthracnose: Colletotrichum dematium = C. spinaciae setae
  • 82. conidia setae Spinach anthracnose: Colletotrichum dematium
  • 83. Cladosporium leaf spot, Stemphylium leaf spot, & anthracnose of spinach Cladosporium variable Distinct, develop dark margin Spores in lesions + (abundant in + (in acervuli) moist conditions) Stemphylium botryosum Diffuse, rapidly expanding Seedborne + + + Wind, seed Volunteers, seed Moist, cool Host range > Chenopods? Spinach Spinach Splashing water, seed Dispersal Wind, seed Seed stalk Volunteers, seed debris, seed Overwintering Moist, warm, Wet, cool pollen Favorable conditions + (in moist conditions) Distinct, coalesce Leaf spot symptoms Colletotrichum dematium
  • 84. Beet & chard leaf spot fungi: Phoma leaf spot Ramularia leaf spot Cercospora leaf spot
  • 85. Phoma leaf spot of beets & chard: Phoma betae Barnett & Hunter, 1972
  • 86. Photo by L.J. du Toit Phoma leaf spot of beet/chard: Phoma betae pycnidia holdfasts on water agar
  • 87. Photo by D.A. Inglis Ramularia leaf spot of beet & chard: Ramularia betae Barnett & Hunter, 1972
  • 88. Cercospora leaf spot of beet/chard: Cercospora beticola Photos at NDSU website: http://www.ext.nodak.edu /extpubs/plantsci/rowcro ps/pp1244w.htm
  • 89. Cercospora leaf spot of beet/chard: Cercospora beticola Cercospora conidia http://www.ext.nodak.edu/extpub s/plantsci/rowcrops/pp1244w.htm
  • 90. Cercospora leaf spot, Ramularia leaf spot, and Phoma leaf spot of beets/chard Cercospora beticola Circular leaf spots, red-brown margin, older leaves; Crown lesions Minute black dots (stromata) in spots Ramularia betae Light brown leaf spots, angular & larger, older leaves Seedborne + (external) + (?) + Dispersal Splashing water, wind, Wind Splashing water, insects insects Overwinter Weeds, debris Debris Soil, roots, debris, weeds Fav. conditions Warm, moist Cool, moist Cool to warm, moist Host range Beet, chard, Chenopod. Beet, chard Beet, lambsquarter weeds Silvery gray to white in spots Black pycnidia in leaf spots, on crowns Spores in leaf spots Round leaf spots, concentric rings on perimeter, dark margin; Seedling black leg; Crown rot Symptoms Phoma betae
  • 91. Crucifer foliar pathogens: Alternaria leaf spot Ring spot Bacterial diseases
  • 92. Alternaria leaf/pod spot of crucifers: Alternaria brassicicola & A. brassicae
  • 93. Alternaria leaf/pod spot of crucifers Alternaria brassicicola smaller spores in chains, no beak Photo from R.L. Gabrielson Alternaria brassicae larger spores, not in chains, long beak beak conidiophore
  • 94. Alternaria leaf/pod spot of crucifers: Alternaria brassicicola & A. brassicae
  • 95. Alternaria leaf/pod spot of crucifers: Alternaria brassicicola & A. brassicae chains of conidia of A. brassicicola
  • 96. Ring spot of crucifers: Mycosphaerella brassicicola Photos by L.J. du Toit Photo from R.L. Gabrielson
  • 97. Ring spot of crucifers: Mycosphaerella brassicicola Photo from R.L. Gabrielson
  • 98. sterile spermagonia & “conidia” Ring spot of crucifers: Mycosphaerella brassicicola Drawings from CMI Descriptions of Pathogenic Fungi & Bacteria No. 468 perithecium with asci & ascospores ascus & ascospores
  • 99. Black leg of crucifers: (Phoma lingam, sexual stage = Leptosphaeria maculans) asci & ascospores Drawings from CMI Descriptions of Pathogenic Fungi & Bacteria No. 331 conidia ascospores pycnidium with conidia perithecium with asci & ascospores
  • 100. Alternaria leaf/pod spot & ring spot of crucifers Alternaria leaf/pod spot Black circular - irregular lesions; necrotic center; black spots on pods & racemes Naked spores Ring spot Circular lesions, definite margin & chlorotic halo, concentric zonation; lowest leaves Symptoms Seedborne + - Dispersal Wind, insects Splashing water, insects Overwinter Debris, biennial seed crops Debris, biennial seed crops Favorable conditions Moist, warm Moist, cool Host range Crucifers, beet Crucifers Black pycnidia &/or perithecia in concentric rings Spores in leaf spots
  • 101. Black rot of crucifers: Xanthomonas campestris pv. campestris
  • 102. Black rot of crucifers: Xanthomonas campestris pv. campestris
  • 103. Black rot of crucifers: Xanthomonas campestris pv. campestris Photos from R.L. Gabrielson
  • 104. Xanthomonas leaf spot of crucifers: Xanthomonas campestris pv. armoraciae/raphani
  • 105. Peppery leaf spot of crucifers: Pseudomonas syringae pv. maculicola Photos from PetoSeed
  • 106. Xanthomonas campestris & Pseudomonas syringae pathogens of crucifers Xanthomonas leaf spot Xanthomonas leaf spot Circular, water-soaked leaf spot, chlorotic halo; dark lesions on petioles - Peppery leaf spot P. s. pv. maculicola Black rot X. c. pv. X. c. pv. raphani X. c. pv. armoraciae campestris Pathogen Symptoms Seedborne + Dispersal Splashing water, seed, insects Overwinter Debris, Crucifer weeds, soil Favorable Cool to warm, Cool, wet conditions extended wet periods Cabbage, broccoli, cauliflower, kale, radish, horseradish Cool to warm, extended wet periods Cabbage, broccoli, cauliflower, kale, radish, tomato, pepper Yellow leaves, wilting, black veins Warm to hot, wet Crucifers (including weeds) Cabbage, broccoli, cauliflower, Br. sprouts, turnip Host range + Circular to angular spots, chlorotic halo Systemic
  • 107. Bacterial leaf spot of beet: Pseudomonas syringae pv. aptata Photos at http://www.ext.nodak.edu/extpubs/plantsci/rowcrops/pp1244w.htm
  • 108. Pseudomonas leaf spot diseases of spinach & beet P. syringae pv. spinaciae Irregular, water-soaked spots; older lesions dark brown to black, angular; lesions visible from top & bottom of leaf P. syringae pv. aptata Circular to irregular leaf spots, tan center, dark margin; leaf margins; coalesce to ragged appearance Symptoms Seedborne - (?) + Splashing water, machinery Debris? Wet, cool? Spinach, others? Beet, chard, bean, eggplant, lettuce, and pepper Host range Splashing water, insects, machinery Dispersal Overwinter Debris, Favorable Wet, cool conditions
  • 109. White mold: Sclerotinia sclerotiorum
  • 110.
  • 111. sclerotia Photo by M.L. Derie apothecia Photo by L.J. du Toit
  • 113.
  • 114. asci with ascospores ascospores
  • 115.
  • 116. Sclerotinia sclerotiorum • extremely broad host range (p. 27 of “2003 PNW Disease Mngmt Hdbk”) • long-lived (sclerotia) • favorable conditions:  extended periods of moist conditions  high humidity - dense canopy, rain, irrigation, dew  cool or warm temperatures
  • 117. Wilt diseases: Fusarium oxysporum & Verticillium dahliae
  • 118. Wilt diseases: Fusarium osysporum vs. Verticillium F. oxysporum Soilborne + + Seedborne + + Host range Narrow (specific) Broad Survival in soil Long-term Long(er)-term Warm, “dry” Warm, “dry” Favorable conditions for infection/symptoms Verticillium
  • 119. Wilt diseases: Fusarium oxysporum Asympto-Forma specialis Symptomatic host matic host Spinach F. oxysporum Beet Spinach f. sp. betae Swiss chard Cabbage (strains 1 & 5) Brussels sprout, cauliflower, collard, kale, mustards, rape, rutabaga, … (strain 1) Flowering stock (strains 3 & 4) F. oxysporum f. sp. conglutinans Radish (formerly strain 2 of F. oxysporum f. sp. conglutinans) F. oxysporum f. sp. raphani Beet Swiss chard F. oxysporum f. sp. spinaciae
  • 120. Fusarium wilt of radish: F. oxysporum f. sp. raphani
  • 121. Fusarium wilt of radish: F. oxysporum f. sp. raphani
  • 122. Fusarium wilt of radish: F. oxysporum f. sp. raphani Photo by D.A. Inglis
  • 123. Fusarium wilt of spinach: F. oxysporum f. sp. spinaciae
  • 124. Fusarium wilt of spinach: F. oxysporum f. sp. spinaciae
  • 125. Verticillium wilt vs. Fusarium wilt of spinach Verticillium wilt Fusarium wilt
  • 126. Verticillium wilt vs. Fusarium wilt of spinach Verticillium wilt Fusarium wilt
  • 127. Fusarium wilt Verticillium wilt Control
  • 128. Systemic infection by Verticillium Non-inoculated control Inoculated with V. dahliae
  • 129. Verticillium wilt vs. Fusarium wilt of spinach Verticillium wilt Fusarium wilt
  • 131. Spinach wilt: Fusarium oxysporum vs. Verticillium dahliae Fusarium wilt Any stage in development General wilting, flaccid, off-green, death Verticillium wilt Only after bolting & initiation of seed set Oldest leaves 1st, initial interveinal chlorosis, then necrosis Symptoms Foliar symptoms Reddening of stem + + External root Black None/Light brown discoloration Vascular discoloration Black Light brown Seedborne/transmitted +/+ +/+ Host range Chenopodiaceae Broad Host resistance + ?
  • 132. Verticillium wilt: Verticillium dahliae & V. albo-atrum Crucifer hosts: Susceptible = cauliflower, Brussels sprouts, cabbage Resistant = broccoli, mustards Chenopod. hosts: Spinach, beets, chard Other hosts: Numerous! Dependant on vegetative compatibility group (VCG)
  • 133. Virus diseases of Chenopodiaceous & Cruciferous vegetables
  • 134. Tools & techniques for diagnosis of virus diseases • symptoms • signs • virus inclusion bodies - light microscopy • virions - electron microscopy • host range studies • vector transmission evaluations • local lesion assays • biochemical/physical tests • immunological assays – ELISA, immunogold labeling, … • molecular (DNA or RNA) assays – PCR
  • 135. Virus diseases of Crucifers: Turnip mosaic virus (TuMV)
  • 136. Virus diseases of Crucifers: Cauliflower mosaic virus (CaMV)
  • 137. Viruses diseases of Crucifers: CaMV vs. TuMV CaMV Mosaic, veinal chlorosis, leaf distortion, premature flowering Several aphids: e.g., green peach aphid, cabbage aphid Vector Transmission Non-persistent Seedborne - Survival Cruciferous weeds Crucifers, lettuce, endive, spinach, zinnia, petunia, … Host range Crucifers only Black necrotic ring spots; mosaic, leaf distortion, necrosis Symptoms TuMV
  • 138. Virus diseases of spinach: Cucumber mosaic virus (CMV)
  • 139. Virus diseases of spinach: Cucumber mosaic virus (CMV)  crown leaves narrow, curled, wrinkled, margins roll in  leaves yellow and die  stunting  symptoms develop faster at high temperatures  aphid transmitted  overwinters in perennial weeds, builds up in vegetables (especially cucurbits)  spread by many aphids
  • 140. Virus yellows of beet Host Sheph. Chenop. Virus Name Range Purse capitatum Closterovirus BYV Beet Yellows Virus narrow - + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Luteovirus BWYV Beet Western Yellows Virus wide + - BChV Beet Chlorosis Virus narrow - + BMYV Beet Mild Yellows Virus intermed. + + Table provided by R.T. Lewellen, USDA ARS, Salinas, CA
  • 141. Virus diseases of beet & chard: Beet western yellows virus (BWYV)
  • 142. Virus diseases of beet & chard: Beet yellows virus (BYV) Photos provided by R.T. Lewellen
  • 143. Virus diseases of beet & chard: Beet mosaic virus (BMV) http://www.ipm.ucdavis.edu/PMG/B/D-SB-BMOV-FO.001.html
  • 144. Important aphid-borne viruses of beets: BWYV, BYV, BMV BYV BWYV Interveinal yellowing (older leaves first); red-brown spots between veins (bronze cast); thick, leathery, brittle leaves; poor root growth Symptoms Vector BMV Yellow circular spots (young leaves); puckered leaves with mottling; stunting Transmission Semi-persistent Non-persistent Alternative hosts Overwintering seed crops, weed hosts Mainly Chenopodiaceae Persistent Aphids (many) Seedborne - Alternative crop & weed hosts Survival Host range Very broad Moderate
  • 145. Virus diseases of beet & chard: Rhizomania Beet necrotic yellow vein virus (BNYVV) & soilborne fungus Polymyxa betae Photos provided by R.T. Lewellen
  • 146. Virus diseases of beet & chard: Rhizomania Photos provided by R.T. Lewellen
  • 147. Virus diseases of beet & chard: Rhizomania  root stunting, proliferation, vascular discoloration  upright, yellow leaves, proliferation of leaves  distinct veinal yellowing is rare but diagnostic  wilting in higher temperatures  vectored by the soilborne fungus, Polymyxa betae  vector favored by saturated soils  spreads in infected soil, on plants  vector survives in soils >10 years  potential yield loss is high  found in sugarbeet fields along Columbia River in 2000  concern re. table beet seed industry in PNW
  • 148. Some other viruses of spinach, beet & chard Photos provided by R.T. Lewellen Beet chlorosis virus (BChV) - non-persistent aphid vector -interveinal yellowing Beet curly top virus (BCTV) -beet leafhopper vector -very broad host range - stunting, hairy roots, thickened & rolled leaves
  • 149. Monitoring diseases • appearance/development • threshold populations • need for control • effectiveness of actions