The All-Species Living Tree (Release LTP_s93): Tree ... - Silva

<strong>The</strong> <strong>All</strong>-<strong>Species</strong> <strong>Living</strong> <strong>Tree</strong> (<strong>Release</strong> <strong>LTP</strong>_<strong>s93</strong>):<br />

<strong>Tree</strong> reconstruction harboring all type strains of all species with validly published names up to December 2007.<br />

Type species are highlighted in red. Incorrectly affiliated species, and ungrouped species due to the absence<br />

of a type species, are indicated by their valid family.<br />

P. Yarza, M. Richter, J. Peplies, J. Euzeby, R. Amann, K.-H. Schleifer, W. Ludwig, F.O. Glöckner, R. Rossello-Mora.<br />

<strong>The</strong> <strong>All</strong>-<strong>Species</strong> <strong>Living</strong> <strong>Tree</strong> Project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.<br />

System. Appl. Microbiol. 2008 In press<br />

for suggestions contact:<br />

living-tree@arb-silva.de<br />

for further information and downloads:<br />

www.elsevier.de/syapm<br />

www.arb-silva.de/living-tree<br />

www.arb-home.de<br />

www.bacterio.cict.fr<br />

Bacteria (6471:0)<br />

Proteobacteria (2392:0)<br />

Gammaproteobacteria and Betaproteobacteria (1444:0)<br />

Enterobacteriaceae and Pasteurellaceae (240:0)<br />

Pasteurellaceae (63:0)<br />

Aggregatibacter actinomycetemcomitans, M75039, type sp.<br />

Aggregatibacter aphrophilus, AY362906<br />

Aggregatibacter segnis, M75043<br />

Haemophilus parainfluenzae, AY362908<br />

Haemophilus pittmaniae, AJ290755<br />

Pasteurella pneumotropica, AY362924<br />

Actinobacillus seminis, AY362897<br />

Pasteurella mairii, AY362923<br />

Pasteurella aerogenes, U66491<br />

Haemophilus aegyptius, AY362905<br />

Haemophilus influenzae, M35019, type sp.<br />

Actinobacillus delphinicola, AY362889<br />

Actinobacillus scotiae, Y09653<br />

Actinobacillus rossii, AY362895<br />

Pasteurella langaaensis, AY362922<br />

Actinobacillus porcinus, U65583<br />

Actinobacillus indolicus, AY362891<br />

Haemophilus parasuis, AY362909<br />

Avibacterium gallinarum, AY362921, type sp.<br />

Avibacterium volantium, M75070<br />

Avibacterium paragallinarum, AY498868<br />

Gallibacterium anatis, AF228001, type sp.<br />

Avibacterium avium, M75058<br />

Volucribacter amazonae, AY216869<br />

Volucribacter psittacicida, AY216868, type sp.<br />

Actinobacillus succinogenes, AF024525<br />

Histophilus somni, AF549387, type sp.<br />

Actinobacillus capsulatus, AY362886<br />

Haemophilus haemoglobinophilus, AY362907<br />

Bibersteinia trehalosi, AY362927, type sp.<br />

Pasteurella canis, AY362919<br />

Pasteurella stomatis, AY362925<br />

Pasteurella dagmatis, AY362920<br />

Pasteurella multocida subsp. multocida, AF294410, type sp.<br />

Pasteurella multocida subsp. gallicida, AF294412<br />

Pasteurella multocida subsp. septica, AF294411<br />

Haemophilus felis, AF224292<br />

Haemophilus paracuniculus, M75061<br />

Actinobacillus muris, AY362894<br />

Nicoletella semolina, AY508816, type sp.<br />

Lonepinella koalarum, Y17189, type sp.<br />

Pasteurella bettyae, AY362917<br />

Pasteurella caballi, AY362918<br />

Actinobacillus hominis, AY362890<br />

Actinobacillus suis, AY362899<br />

Actinobacillus arthritidis, L06084<br />

Actinobacillus equuli subsp. equuli, AF381186<br />

Haemophilus parahaemolyticus, M75073<br />

Actinobacillus equuli subsp. haemolyticus, AF247716<br />

Actinobacillus ureae, AY362900<br />

Actinobacillus lignieresii, AY362892, type sp.<br />

Actinobacillus pleuropneumoniae, M75074<br />

Actinobacillus minor, AY362893<br />

Haemophilus paraphrohaemolyticus, M75076<br />

Mannheimia granulomatis, AF053902<br />

1<br />

Mannheimia varigena, AF053893<br />

Mannheimia ruminalis, AF053900<br />

Mannheimia glucosida, AF053889<br />

Mannheimia haemolytica, M75080, type sp.<br />

Haemophilus ducreyi, M63900

---

Haemophilus ducreyi, M63900<br />

Pasteurella skyensis, AJ243202<br />

Phocoenobacter uteri, X89379, type sp.<br />

Pasteurella testudinis, AY362926<br />

Thorsellia anophelis, AY837748, type sp.<br />

Arsenophonus nasoniae, AY264674, type sp.<br />

Photorhabdus asymbiotica subsp. asymbiotica, Z76755<br />

Photorhabdus luminescens subsp. luminescens, X82248, type sp.<br />

Photorhabdus asymbiotica subsp. australis, AY280572<br />

Photorhabdus temperata, AJ007405<br />

Photorhabdus luminescens subsp. kayaii, AJ560630<br />

Photorhabdus luminescens subsp. laumondii, AJ007404<br />

Photorhabdus luminescens subsp. akhurstii, AJ007359<br />

Photorhabdus luminescens subsp. thracensis, AJ560634<br />

Xenorhabdus beddingii, AY278675<br />

Xenorhabdus griffiniae, DQ211710<br />

Xenorhabdus poinarii, D78010<br />

Xenorhabdus cabanillasii, AY521244<br />

Xenorhabdus romanii, DQ211717<br />

Xenorhabdus miraniensis, DQ211713<br />

Xenorhabdus mauleonii, DQ211715<br />

Xenorhabdus nematophila, AY278674, type sp.<br />

Xenorhabdus szentirmaii, AJ810295<br />

Xenorhabdus bovienii, AY278673<br />

Xenorhabdus japonica, D78008<br />

Xenorhabdus budapestensis, AJ810293<br />

Xenorhabdus ehlersii, AJ810294<br />

Xenorhabdus kozodoii, DQ211716<br />

Xenorhabdus doucetiae, DQ211709<br />

Xenorhabdus innexi, AJ810292<br />

Xenorhabdus stockiae, DQ202309<br />

Xenorhabdus koppenhoeferi, DQ205450<br />

Xenorhabdus hominickii, DQ211719<br />

Proteus mirabilis, DQ885256<br />

Proteus penneri, DQ885258<br />

Proteus hauseri, DQ885262<br />

Proteus vulgaris, AJ233425, type sp.<br />

Proteus myxofaciens, DQ885259<br />

Providencia alcalifaciens, AJ301684, type sp.<br />

Providencia rustigianii, AM040489<br />

Providencia heimbachae, AM040490<br />

Providencia rettgeri, AM040492<br />

Providencia vermicola, AM040495<br />

Providencia stuartii, AF008581<br />

Morganella morganii subsp. morganii, AJ301681, type sp.<br />

Morganella morganii subsp. sibonii, DQ358146<br />

Morganella psychrotolerans, DQ358135<br />

Budvicia aquatica, AJ233407, type sp.<br />

Leminorella grimontii, AJ233421, type sp.<br />

Pragia fontium, AJ233424, type sp.<br />

Brenneria quercina, AJ233416<br />

Brenneria salicis, U80210, type sp.<br />

Sodalis glossinidius, M99060, type sp.<br />

Brenneria rubrifaciens, AJ233418<br />

Dickeya dadantii, AF520707<br />

Dickeya dianthicola, AF520708<br />

Dickeya paradisiaca, Z96096<br />

Dickeya chrysanthemi, AJ233412, type sp.<br />

Dickeya dieffenbachiae, AF520712<br />

Dickeya zeae, AF520711<br />

Brenneria nigrifluens, U80203<br />

Brenneria alni, AJ233409<br />

Samsonia erythrinae, AF273037, type sp.<br />

Pectobacterium carotovorum subsp. odoriferum, AJ223407<br />

Pectobacterium carotovorum subsp. carotovorum, AJ233411, type sp.<br />

Pectobacterium cacticida, AJ223409<br />

Pectobacterium wasabiae, U80199<br />

Pectobacterium betavasculorum, U80198<br />

Pectobacterium atrosepticum, Z96090<br />

Salmonella enterica subsp. diarizonae, EU014688<br />

Salmonella enterica subsp. salamae, EU014685<br />

Salmonella enterica subsp. houtenae, EU014684<br />

Salmonella enterica subsp. indica, EU014680<br />

Salmonella enterica subsp. arizonae, AF008580<br />

Citrobacter amalonaticus, DQ187379<br />

Citrobacter farmeri, AF025371<br />

Citrobacter rodentium, AF025363<br />

Citrobacter sedlakii, AF025364<br />

Salmonella bongori, AF029227<br />

Escherichia albertii, AJ508775<br />

Escherichia coli, X80725, type sp.<br />

Escherichia fergusonii, AF530475<br />

Shigella flexneri, X96963<br />

Shigella sonnei, X80726<br />

Shigella dysenteriae, X96966, type sp.<br />

Salmonella subterranea, AY373829<br />

Trabulsiella odontotermitis, DQ453129<br />

Trabulsiella guamensis, AY373830, type sp.<br />

Enterobacter sakazakii, EF088379<br />

Klebsiella singaporensis, AF250285<br />

Klebsiella variicola, AJ783916<br />

Klebsiella pneumoniae subsp. pneumoniae, X87276, type sp.<br />

Klebsiella pneumoniae subsp. rhinoscleromatis, Y17657<br />

Klebsiella pneumoniae subsp. ozaenae, AF130982<br />

Enterobacter cloacae subsp. dissolvens, Z96079<br />

Enterobacter cloacae subsp. cloacae, AJ251469, type sp.<br />

Enterobacter cowanii, AJ508303<br />

Enterobacter radicincitans, AY563134<br />

Escherichia hermannii, X80675<br />

Erwinia amylovora, AJ233410, type sp.<br />

Erwinia pyrifoliae, EF122435<br />

Erwinia tasmaniensis, AM055716

---

Erwinia tasmaniensis, AM055716<br />

Erwinia persicina, U80205<br />

Erwinia rhapontici, AJ233417<br />

Pectobacterium cypripedii, AJ233413<br />

Pantoea dispersa, DQ504305<br />

Erwinia mallotivora, AJ233414<br />

Erwinia papayae, AY131237<br />

Erwinia psidii, Z96085<br />

Erwinia tracheiphila, Y13250<br />

Pantoea agglomerans, AJ233423, type sp.<br />

Pantoea ananatis, U80196<br />

Pantoea stewartii subsp. stewartii, U80208<br />

Enterobacter pyrinus, AJ010486<br />

Enterobacter gergoviae, AB004748<br />

Enterobacter hormaechei, AJ508302<br />

Escherichia vulneris, AF530476<br />

Enterobacter ludwigii, AJ853891<br />

Enterobacter cancerogenus, Z96078<br />

Enterobacter asburiae, AB004744<br />

Kluyvera ascorbata, AF008579, type sp.<br />

Kluyvera georgiana, AF047186<br />

Kluyvera cryocrescens, AF310218<br />

Kluyvera intermedia, AF310217<br />

Pseudomonas flectens, AB021400, Pseudomonadaceae<br />

Pantoea citrea, DQ838096<br />

Tatumella ptyseos, AJ233437, type sp.<br />

Citrobacter braakii, AF025368<br />

Citrobacter murliniae, AF025369<br />

Citrobacter werkmanii, AF025373<br />

Citrobacter freundii, AJ233408, type sp.<br />

Citrobacter gillenii, AF025367<br />

Klebsiella oxytoca, AF129440<br />

Raoultella ornithinolytica, U78182<br />

Raoultella planticola, AF129443, type sp.<br />

Enterobacter aerogenes, AB004750<br />

Enterobacter kobei, AJ508301<br />

Raoultella terrigena, Y17658<br />

Enterobacter amnigenus, AB004749<br />

Buttiauxella agrestis, AJ233400, type sp.<br />

Buttiauxella brennerae, AJ233401<br />

Buttiauxella ferragutiae, AJ233402<br />

Buttiauxella gaviniae, AJ233403<br />

Buttiauxella noackiae, AJ233405<br />

Buttiauxella warmboldiae, AJ233406<br />

Buttiauxella izardii, AJ233404<br />

Enterobacter nimipressuralis, Z96077<br />

Serratia ureilytica, AJ854062<br />

Cedecea davisae, AF493976, type sp.<br />

Cedecea neteri, AB086230<br />

Edwardsiella hoshinae, AB050825<br />

Edwardsiella ictaluri, AB050826<br />

Edwardsiella tarda, AB050827, type sp.<br />

Serratia rubidaea, AB004751<br />

Serratia marcescens subsp. sakuensis, AB061685<br />

Serratia marcescens subsp. marcescens, AJ233431, type sp.<br />

Serratia odorifera, AJ233432<br />

Serratia entomophila, AJ233427<br />

Serratia ficaria, AJ233428<br />

Yersinia pestis, AF366383, type sp.<br />

Yersinia pseudotuberculosis subsp. pseudotuberculosis, AF366375<br />

Yersinia ruckeri, AF366385<br />

Yersinia aleksiciae, AJ627597<br />

Yersinia bercovieri, AF366377<br />

Yersinia intermedia, AF366380<br />

Yersinia frederiksenii, AF366379<br />

Yersinia kristensenii, AF366381<br />

Yersinia rohdei, AF366384<br />

Yersinia aldovae, AF366376<br />

Yersinia mollaretii, AF366382<br />

Yersinia enterocolitica subsp. enterocolitica, AF366378<br />

Rahnella aquatilis, AJ233426, type sp.<br />

Hafnia alvei, M59155, type sp.<br />

Obesumbacterium proteus, AJ233422, type sp.<br />

Serratia fonticola, AJ233429<br />

Serratia proteamaculans, AJ233434<br />

Serratia quinivorans, AJ233435<br />

Serratia grimesii, AJ233430<br />

Serratia liquefaciens, AJ306725<br />

Serratia plymuthica, AJ233433<br />

Plesiomonas shigelloides, X60418, type sp.<br />

Vibrionaceae (91:0)<br />

Vibrio comitans, DQ922915<br />

Vibrio superstes, AY155585<br />

Vibrio inusitatus, DQ922920<br />

Vibrio rarus, DQ914239<br />

Vibrio ezurae, AY426980<br />

Vibrio halioticoli, AB000390<br />

Vibrio neonatus, AY426979<br />

Aliivibrio logei, AJ437616<br />

Aliivibrio salmonicida, X70643<br />

Aliivibrio wodanis, AJ132227<br />

Aliivibrio fischeri, X74702, type sp.<br />

Vibrio agarivorans, AJ310647<br />

Vibrio gallicus, AY257972<br />

Listonella pelagia, AJ293802<br />

Vibrio fortis, AJ514916<br />

Vibrio brasiliensis, AJ316172<br />

Vibrio coralliilyticus, AJ440005<br />

Vibrio neptunius, AJ316171<br />

Vibrio hepatarius, AJ345063<br />

Vibrio tubiashii, X74725

---

Vibrio xuii, AJ316181<br />

Vibrio alginolyticus, X56576<br />

Vibrio campbellii, X56575<br />

Vibrio harveyi, AY750575<br />

Vibrio rotiferianus, AJ316187<br />

Vibrio parahaemolyticus, AF388386<br />

Vibrio natriegens, X74714<br />

Vibrio diabolicus, X99762<br />

Vibrio mytili, X99761<br />

Vibrio nereis, X74716<br />

Vibrio proteolyticus, X74723<br />

Vibrio albensis, EF032499<br />

Vibrio cholerae, X76337, type sp.<br />

Vibrio mimicus, X74713<br />

Vibrio rhizosphaerae, DQ847123<br />

Vibrio ruber, AF462458<br />

Vibrio gazogenes, X74705<br />

Vibrio fluvialis, X76335<br />

Vibrio furnissii, X76336<br />

Vibrio nigripulchritudo, X74717<br />

Vibrio ponticus, AJ630103<br />

Vibrio orientalis, X74719<br />

Vibrio mediterranei, X74710<br />

Vibrio kanaloae, AM162657<br />

Vibrio lentus, AJ278881<br />

Vibrio splendidus, AJ515230<br />

Vibrio cyclitrophicus, AM162656<br />

Vibrio tasmaniensis, AJ316192<br />

Vibrio gigantis, EF094888<br />

Vibrio crassostreae, EF094887<br />

Vibrio pomeroyi, AJ491290<br />

Vibrio chagasii, AJ316199<br />

Vibrio pacinii, AJ316194<br />

Vibrio pectenicida, Y13830<br />

Listonella anguillarum, AM235737, type sp.<br />

Vibrio ordalii, X74718<br />

Vibrio diazotrophicus, X74701<br />

Vibrio hispanicus, AY254040<br />

Vibrio metschnikovii, X74711<br />

Vibrio cincinnatiensis, X74698<br />

Vibrio ichthyoenteri, AJ421445<br />

Vibrio scophthalmi, U46579<br />

Vibrio vulnificus, X76333<br />

Vibrio aestuarianus, X74689<br />

Vibrio tapetis, Y08430<br />

Vibrio penaeicida, AJ421444<br />

Vibrio litoralis, DQ097523<br />

Vibrio rumoiensis, AB013297<br />

Enterovibrio coralii, AJ842343<br />

Grimontia hollisae, AJ514909, type sp.<br />

Vibrio calviensis, AF118021<br />

Enterovibrio norvegicus, AJ316208, type sp.<br />

Salinivibrio costicola subsp. costicola, X74699, type sp.<br />

Salinivibrio costicola subsp. alcaliphilus, AJ640132<br />

Salinivibrio costicola subsp. vallismortis, AF057016<br />

Photobacterium halotolerans, AY551089<br />

Photobacterium ganghwense, AY960847<br />

Photobacterium lutimaris, DQ534014<br />

Photobacterium rosenbergii, AJ842344<br />

Photobacterium damselae subsp. damselae, AB032015<br />

Photobacterium damselae subsp. piscicida, X78105<br />

Photobacterium leiognathi, X74686<br />

Photobacterium frigidiphilum, AY538749<br />

Photobacterium indicum, AB016982<br />

Photobacterium profundum, D21226<br />

Photobacterium lipolyticum, AY554009<br />

Photobacterium aplysiae, AY781193<br />

Photobacterium iliopiscarium, AY643710<br />

Photobacterium kishitanii, AY341439<br />

Photobacterium phosphoreum, Z19107, type sp.<br />

Photobacterium angustum, D25307<br />

Aeromonadaceae and Succinivibrionaceae (39:0)<br />

Aeromonas enteropelogenes, X71121<br />

Aeromonas punctata subsp. caviae, X74674<br />

Aeromonas punctata subsp. punctata, X60408<br />

Aeromonas hydrophila subsp. dhakensis, AJ508765<br />

Aeromonas hydrophila subsp. ranae, AM262151<br />

Aeromonas media, X60410<br />

Aeromonas hydrophila subsp. hydrophila, DQ207728, type sp.<br />

Aeromonas schubertii, X60416<br />

Aeromonas simiae, AJ536821<br />

Aeromonas jandaei, X60413<br />

Aeromonas veronii, X60414<br />

Aeromonas ichthiosmia, X71120<br />

Aeromonas eucrenophila, X60411<br />

Aeromonas allosaccharophila, S39232<br />

Aeromonas bivalvium, DQ504429<br />

Aeromonas popoffii, AJ224308<br />

Aeromonas sobria, X60412<br />

Aeromonas encheleia, AJ224309<br />

Aeromonas salmonicida subsp. pectinolytica, AF134065<br />

Aeromonas bestiarum, X60406<br />

Aeromonas salmonicida subsp. salmonicida, AY987751<br />

Aeromonas salmonicida subsp. masoucida, AB027542<br />

Aeromonas salmonicida subsp. achromogenes, X60407<br />

Aeromonas salmonicida subsp. smithia, AJ009859<br />

Aeromonas molluscorum, AY532690<br />

Succinivibrionaceae (5:0)<br />

Anaerobiospirillum succiniciproducens, U96412, type sp.<br />

Anaerobiospirillum thomasii, AJ420985

---

Anaerobiospirillum thomasii, AJ420985<br />

Succinivibrio dextrinosolvens, Y17600, type sp.<br />

Ruminobacter amylophilus, Y15992, type sp.<br />

Succinimonas amylolytica, Y17599, type sp.<br />

Tolumonas auensis, X92889, type sp.<br />

Aeromonas sharmana, DQ013306<br />

Oceanimonas baumannii, AF168367<br />

Oceanimonas smirnovii, AY538714<br />

Oceanimonas doudoroffii, AB019390, type sp.<br />

Zobellella denitrificans, DQ195675, type sp.<br />

Zobellella taiwanensis, DQ195676<br />

Oceanisphaera donghaensis, DQ190441<br />

Oceanisphaera litoralis, AJ550470, type sp.<br />

Shewanellaceae and Ferrimonadaceae (51:0)<br />

Shewanella pealeana , ARB_C5135190<br />

Shewanella halifaxensis, AY579751<br />

Shewanella marinintestina, AB081757<br />

Shewanella sairae, AB081762<br />

Shewanella pneumatophori, AB204519<br />

Shewanella fidelis, AF420312<br />

Shewanella schlegeliana, AB081760<br />

Shewanella kaireitica, AB094598<br />

Shewanella psychrophila, AJ551089<br />

Shewanella abyssi, AB201475<br />

Shewanella gelidimarina, U85907<br />

Shewanella surugensis, AB094597<br />

Shewanella benthica, X82131<br />

Shewanella violacea, D21225<br />

Shewanella piezotolerans , AJ551090<br />

Shewanella hanedai, X82132<br />

Shewanella woodyi , AAUO01000015<br />

Shewanella canadensis, AY579749<br />

Shewanella atlantica, AY579752<br />

Shewanella aquimarina, AY485225<br />

Shewanella loihica, DQ286387<br />

Shewanella marisflavi, AY485224<br />

Shewanella colwelliana, AY653177<br />

Shewanella algidipiscicola, AB205570<br />

Shewanella waksmanii, AY170366<br />

Shewanella haliotis, EF178282<br />

Shewanella algae, AF005249<br />

Shewanella amazonensis, AF005248<br />

Shewanella morhuae, AB205576<br />

Shewanella glacialipiscicola, AB205571<br />

Shewanella baltica, AJ000214<br />

Shewanella oneidensis , AF005251<br />

Shewanella putrefaciens, X81623, type sp.<br />

Shewanella decolorationis, AJ609571<br />

Shewanella hafniensis, AB205566<br />

Shewanella frigidimarina, U85903<br />

Shewanella livingstonensis, AJ300834<br />

Shewanella denitrificans, AJ311964<br />

Shewanella gaetbuli, AY190533<br />

Ferrimonadaceae (6:0)<br />

Ferrimonas balearica, X93021, type sp.<br />

Ferrimonas marina, AB193751<br />

Ferrimonas senticii, DQ778094<br />

Ferrimonas futtsuensis, AB245515<br />

Ferrimonas kyonanensis, AB245514<br />

Paraferrimonas sedimenticola, AB252732, type sp.<br />

Shewanella spongiae, DQ167234<br />

Shewanella irciniae, DQ180743<br />

Shewanella donghaensis, AY326275<br />

Shewanella olleyana, AF295592<br />

Shewanella pacifica, AF500075<br />

Shewanella japonica, AF145921<br />

Pseudoalteromonadaceae (33:0)<br />

Pseudoalteromonas aliena, AY387858<br />

Pseudoalteromonas marina, AY563031<br />

Pseudoalteromonas haloplanktis, X67024, type sp.<br />

Pseudoalteromonas nigrifaciens, X82146<br />

Pseudoalteromonas antarctica, X98336<br />

Pseudoalteromonas translucida, AY040230<br />

Pseudoalteromonas undina, X82140<br />

Pseudoalteromonas atlantica, X82134<br />

Pseudoalteromonas espejiana, X82143<br />

Pseudoalteromonas carrageenovora, X82136<br />

Pseudoalteromonas elyakovii, AF082562<br />

Pseudoalteromonas paragorgicola, AY040229<br />

Pseudoalteromonas distincta, AF082564<br />

Pseudoalteromonas agarivorans, AJ417594<br />

Pseudoalteromonas issachenkonii, AF316144<br />

Pseudoalteromonas tetraodonis, AF214730<br />

Pseudoalteromonas mariniglutinosa, AJ507251<br />

Pseudoalteromonas prydzensis, U85855<br />

Pseudoalteromonas byunsanensis, DQ011289<br />

Pseudoalteromonas aurantia, X82135<br />

Pseudoalteromonas citrea, X82137<br />

Pseudoalteromonas flavipulchra, AF297958<br />

Pseudoalteromonas maricaloris, AF144036<br />

Pseudoalteromonas piscicida, AB090232<br />

Pseudoalteromonas peptidolytica, AF007286<br />

Pseudoalteromonas rubra, X82147<br />

Pseudoalteromonas luteoviolacea, X82144<br />

Pseudoalteromonas ruthenica, AF316891<br />

Pseudoalteromonas spongiae, AY769918<br />

Pseudoalteromonas phenolica, AF332880<br />

Pseudoalteromonas denitrificans, X82138

---

Pseudoalteromonas tunicata , Z25522<br />

Pseudoalteromonas ulvae, AF172987<br />

Colwelliaceae (11:0)<br />

Colwellia psychrotropica, U85846<br />

Colwellia rossensis, U14581<br />

Colwellia maris, AB002630<br />

Colwellia piezophila, AB094412<br />

Colwellia demingiae, U85845<br />

Colwellia psychrerythraea, AB011364, type sp.<br />

Colwellia aestuarii, DQ055844<br />

Thalassomonas viridans, AJ294747, type sp.<br />

Thalassomonas agarivorans, DQ212914<br />

Thalassomonas loyana, AY643537<br />

Thalassomonas ganghwensis, AY194066<br />

Idiomarinaceae (11:0)<br />

Pseudidiomarina sediminum, EF212001<br />

Pseudidiomarina taiwanensis, DQ118948, type sp.<br />

Idiomarina salinarum, EF486355<br />

Idiomarina homiensis, DQ342238<br />

Idiomarina abyssalis, AF052740, type sp.<br />

Idiomarina ramblicola, AY526862<br />

Idiomarina loihiensis, AF288370<br />

Idiomarina seosinensis, AY635468<br />

Idiomarina zobellii, AF052741<br />

Idiomarina baltica, AJ440214<br />

Idiomarina fontislapidosi, AY526861<br />

Agarivorans albus, AB076561, Alteromonadaceae, type sp.<br />

Psychromonadaceae (7:0)<br />

Psychromonas kaikoae, AB052160<br />

Psychromonas marina, AB023378<br />

Psychromonas profunda, AJ416756<br />

Psychromonas hadalis, AB094413<br />

Psychromonas arctica, AF374385<br />

Psychromonas ingrahamii , U73721<br />

Psychromonas antarctica, Y14697, type sp.<br />

Moritellaceae (6:0)<br />

Moritella abyssi, AJ252022<br />

Moritella profunda, AJ252023<br />

Moritella japonica, D21224<br />

Moritella viscosa, AJ132226<br />

Moritella yayanosii, AB008797<br />

Moritella marina, AB038033, type sp.<br />

Algicola bacteriolytica, D89929, Pseudoalteromonadaceae, type sp.<br />

Algicola sagamiensis, AB063324, Pseudoalteromonadaceae<br />

Alteromonadaceae (20:0)<br />

Glaciecola agarilytica, DQ784575<br />

Glaciecola chathamensis, AB247623<br />

Glaciecola polaris, AJ293820<br />

Glaciecola mesophila, AJ488501<br />

Glaciecola psychrophila, DQ007436<br />

Glaciecola punicea, U85853, type sp.<br />

Glaciecola nitratireducens, AY787042<br />

Glaciecola pallidula, U85854<br />

Aestuariibacter halophilus, AY207503<br />

Aestuariibacter salexigens, AY207502, type sp.<br />

Alteromonas macleodii, Y18228, type sp.<br />

Alteromonas simiduii, DQ836766<br />

Alteromonas marina, AF529060<br />

Alteromonas tagae, DQ836765<br />

Alteromonas addita, AY682202<br />

Alteromonas stellipolaris, AJ295715<br />

Alteromonas litorea, AY428573<br />

Alteromonas hispanica, AY926460<br />

Salinimonas chungwhensis, AY553295, type sp.<br />

Bowmanella denitrificans, DQ343294, type sp.<br />

Rheinheimera aquimaris, EF076757, Chromatiaceae<br />

Rheinheimera pacifica, AB073132, Chromatiaceae<br />

Rheinheimera baltica, AJ441080, Chromatiaceae, type sp.<br />

Rheinheimera chironomi, DQ298025, Chromatiaceae<br />

Rheinheimera texasensis, AY701891, Chromatiaceae<br />

Alishewanella fetalis, AF144407, Alteromonadaceae, type sp.<br />

Rheinheimera perlucida, AM183347, Chromatiaceae<br />

Alkalimonas amylolytica, AF250323, Unclassified Gammaproteobacteria, type sp.<br />

Alkalimonas delamerensis, X92130, Unclassified Gammaproteobacteria<br />

Alkalimonas collagenimarina, AB270706, Unclassified Gammaproteobacteria<br />

Halomonadaceae (61:0)<br />

Halomonas aquamarina, AJ306888<br />

Halomonas meridiana, AJ306891<br />

Halomonas axialensis, AF212206<br />

Halomonas magadiensis, X92150<br />

Halomonas hydrothermalis, AF212218<br />

Halomonas alkaliphila, AJ640133<br />

Halomonas venusta, AJ306894<br />

Halomonas boliviensis, AY245449<br />

Halomonas variabilis, AJ306893<br />

Halomonas neptunia, AF212202<br />

Halomonas sulfidaeris, AF212204<br />

Halomonas janggokensis, AM229315<br />

Halomonas subterranea, EF144148<br />

Halomonas arcis, EF144147<br />

Halomonas gomseomensis, AM229314<br />

Halomonas halodurans, L42619<br />

Halomonas subglaciescola, AJ306892<br />

Halomonas halocynthiae, AJ417388

---

Chromohalobacter beijerinckii, AB021386<br />

Chromohalobacter japonicus, AB105159<br />

Chromohalobacter canadensis, AJ295143<br />

Chromohalobacter nigrandesensis, AJ277205<br />

Chromohalobacter sarecensis, AY373448<br />

Chromohalobacter marismortui, X87219, type sp.<br />

Chromohalobacter israelensis, AJ295144<br />

Chromohalobacter salexigens , CP000285<br />

Chromohalobacter salarius, AJ427626<br />

Halomonas salaria, AM229316<br />

Modicisalibacter tunisiensis, DQ641495, type sp.<br />

Halomonas alimentaria, AF211860<br />

Halomonas halodenitrificans, L04942<br />

Halomonas gudaonensis, DQ421808<br />

Halomonas shengliensis, EF121853<br />

Halomonas campisalis, AF054286<br />

Halomonas desiderata, X92417<br />

Halomonas campaniensis, AJ515365<br />

Halomonas almeriensis, AY858696<br />

Halomonas halmophila, AJ306889<br />

Halomonas elongata, X67023, type sp.<br />

Halomonas eurihalina, X87218<br />

Halomonas cupida, L42615<br />

Halomonas denitrificans, AM229317<br />

Halomonas saccharevitans, EF144149<br />

Halomonas maura, AJ271864<br />

Halomonas ventosae, AY268080<br />

Halomonas organivorans, AJ616910<br />

Halomonas salina, AJ295145<br />

Halomonas koreensis, AY382579<br />

Halomonas pacifica, L42616<br />

Halomonas muralis, AJ320530<br />

Halomonas pantelleriensis, X93493<br />

Halomonas kribbensis, DQ280368<br />

Halomonas anticariensis, AY489405<br />

Halomonas taeanensis, AY671975<br />

Halomonas marisflavi, AF251143<br />

Halomonas indalinina, AJ427627<br />

Halomonas avicenniae, DQ888315<br />

Cobetia marina, AJ306890, type sp.<br />

Carnimonas nigrificans, Y13299, type sp.<br />

Halotalea alkalilenta, DQ421388, type sp.<br />

Zymobacter palmae, AF211871, type sp.<br />

Marinospirillum insulare, AB098510, Oceanospirillaceae<br />

Marinospirillum megaterium, AB006770, Oceanospirillaceae<br />

Marinospirillum minutulum, AB006769, Oceanospirillaceae, type sp.<br />

Marinospirillum alkaliphilum, AF275713, Oceanospirillaceae<br />

Pseudospirillum japonicum, AB006766, Oceanospirillaceae, type sp.<br />

Marinomonas primoryensis, AB074193, Oceanospirillaceae<br />

Marinomonas polaris, AJ833000, Oceanospirillaceae<br />

Marinomonas ushuaiensis, AJ627909, Oceanospirillaceae<br />

Marinomonas pontica, AY539835, Oceanospirillaceae<br />

Marinomonas dokdonensis, DQ011526, Oceanospirillaceae<br />

Marinomonas mediterranea, AF063027, Oceanospirillaceae<br />

Marinomonas communis, DQ011528, Oceanospirillaceae, type sp.<br />

Marinomonas ostreistagni, AB242868, Oceanospirillaceae<br />

Marinomonas aquimarina, AJ843077, Oceanospirillaceae<br />

Marinomonas vaga, X67025, Oceanospirillaceae<br />

Marinobacterium georgiense, U58339, Alteromonadaceae, type sp.<br />

Marinobacterium halophilum, AY563030, Alteromonadaceae<br />

Marinobacterium stanieri, AB021367, Alteromonadaceae<br />

Marinobacterium jannaschii, AB006765, Alteromonadaceae<br />

Nitrincola lacisaponensis, AY567473, Oceanospirillaceae, type sp.<br />

Marinobacterium litorale, DQ917760, Alteromonadaceae<br />

Neptunomonas naphthovorans, AF053734, Oceanospirillaceae, type sp.<br />

Neptuniibacter caesariensis, AY136116, Oceanospirillaceae, type sp.<br />

Oceanobacter kriegii, AB006767, Oceanospirillaceae, type sp.<br />

Thalassolituus oleivorans, AJ431699, Oceanospirillaceae, type sp.<br />

Oleispira antarctica, AJ426420, Oceanospirillaceae, type sp.<br />

Oceanospirillum beijerinckii, AB006760, Oceanospirillaceae<br />

Oceanospirillum maris, AB006763, Oceanospirillaceae<br />

Oceanospirillum multiglobuliferum, AB006764, Oceanospirillaceae<br />

Balneatrix alpica, Y17112, Oceanospirillaceae, type sp.<br />

Reinekea blandensis, DQ403810, Oceanospirillaceae<br />

Reinekea marinisedimentorum, AJ561121, Oceanospirillaceae, type sp.<br />

Saccharospirillum impatiens, AJ315983, Saccharospirillaceae, type sp.<br />

Litoricola lipolytica, EF176580, Litoricolaceae, type sp.<br />

Fluoribacter dumoffii, Z32637, Legionellaceae<br />

Fluoribacter gormanii, Z32639, Legionellaceae<br />

Legionella cherrii, Z49720, Legionellaceae<br />

Legionella parisiensis, Z49731, Legionellaceae<br />

Legionella anisa, Z32635, Legionellaceae<br />

Legionella wadsworthii, Z49738, Legionellaceae<br />

Legionella steigerwaltii, Z49737, Legionellaceae<br />

Legionella tucsonensis, Z32644, Legionellaceae<br />

Legionella cincinnatiensis, Z49721, Legionellaceae<br />

Legionella sainthelensi, Z49734, Legionellaceae<br />

Legionella longbeachae, AY444740, Legionellaceae<br />

Legionella gratiana, Z49725, Legionellaceae<br />

Legionella lytica, X97364, Legionellaceae<br />

Legionella rowbothamii, X97359, Legionellaceae<br />

Legionella drancourtii, X97366, Legionellaceae<br />

Legionella fallonii, X97363, Legionellaceae<br />

Legionella moravica, Z49729, Legionellaceae<br />

Legionella shakespearei, Z49736, Legionellaceae<br />

Legionella quateirensis, Z49732, Legionellaceae<br />

Legionella worsleiensis, Z49739, Legionellaceae<br />

Legionella pneumophila subsp. pascullei, AF122885, Legionellaceae<br />

Legionella waltersii, AF122886, Legionellaceae<br />

Legionella fairfieldensis, Z49722, Legionellaceae<br />

Legionella londiniensis, Z49728, Legionellaceae

---

Legionella busanensis, AF424887, Legionellaceae<br />

Legionella gresilensis, AF122883, Legionellaceae<br />

Legionella beliardensis, AF122884, Legionellaceae<br />

Tatlockia maceachernii, AF227161, Legionellaceae<br />

Legionella micdadei, AF227162, Legionellaceae<br />

Legionella impletisoli, AB233209, Legionellaceae<br />

Legionella yabuuchiae, AB233210, Legionellaceae<br />

Legionella oakridgensis, Z32642, Legionellaceae<br />

Legionella israelensis, Z32640, Legionellaceae<br />

Legionella nautarum, Z49730, Legionellaceae<br />

Legionella birminghamensis, Z49717, Legionellaceae<br />

Legionella quinlivanii, Z49733, Legionellaceae<br />

Legionella adelaidensis, Z49716, Legionellaceae<br />

Legionella jamestowniensis, Z49726, Legionellaceae<br />

Legionella jordanis, Z32667, Legionellaceae<br />

Legionella brunensis, Z32636, Legionellaceae<br />

Legionella rubrilucens, Z32643, Legionellaceae<br />

Legionella taurinensis, DQ667196, Legionellaceae<br />

Legionella erythra, Z32638, Legionellaceae<br />

Legionella lansingensis, Z49727, Legionellaceae<br />

Legionella drozanskii, X97355, Legionellaceae<br />

Legionella feeleii, X73395, Legionellaceae<br />

Legionella geestiana, Z49723, Legionellaceae<br />

Aquicella lusitana, AY359282, Coxiellaceae, type sp.<br />

Aquicella siphonis, AY359283, Coxiellaceae<br />

Thiomicrospira arctica, AJ404731, Piscirickettsiaceae<br />

Thiomicrospira psychrophila, AJ404732, Piscirickettsiaceae<br />

Thiomicrospira frisia, AF013974, Piscirickettsiaceae<br />

Thiomicrospira chilensis, AF013975, Piscirickettsiaceae<br />

Thiomicrospira crunogena, L40810, Piscirickettsiaceae<br />

Thiomicrospira thermophila, AB166731, Piscirickettsiaceae<br />

Thiomicrospira halophila, DQ390450, Piscirickettsiaceae<br />

Hydrogenovibrio marinus, D86374, Piscirickettsiaceae, type sp.<br />

Thiomicrospira kuenenii, AF013978, Piscirickettsiaceae<br />

Thiomicrospira pelophila, L40809, Piscirickettsiaceae, type sp.<br />

Thiomicrospira thyasirae, AF016046, Piscirickettsiaceae<br />

Thioalkalimicrobium aerophilum, AF126548, Piscirickettsiaceae, type sp.<br />

Thioalkalimicrobium sibiricum, AF126549, Piscirickettsiaceae<br />

Thioalkalimicrobium cyclicum, AF329082, Piscirickettsiaceae<br />

Thioalkalimicrobium microaerophilum, DQ900623, Piscirickettsiaceae<br />

Sulfurivirga caldicuralii, AB245479, Piscirickettsiaceae, type sp.<br />

Pseudomonadaceae (116:0)<br />

Pseudomonas antarctica, AJ537601<br />

Pseudomonas meridiana, AJ537602<br />

Pseudomonas azotoformans, D84009<br />

Pseudomonas fluorescens, D84013<br />

Pseudomonas costantinii, AF374472<br />

Pseudomonas salomonii, AY091528<br />

Pseudomonas simiae, AJ936933<br />

Pseudomonas lurida, AJ581999<br />

Pseudomonas trivialis, AJ492831<br />

Pseudomonas poae, AJ492829<br />

Pseudomonas brenneri, AF268968<br />

Pseudomonas gessardii, AF074384<br />

Pseudomonas proteolytica, AJ537603<br />

Pseudomonas libanensis, AF057645<br />

Pseudomonas mucidolens, D84017<br />

Pseudomonas rhodesiae, AF064459<br />

Pseudomonas synxantha, D84025<br />

Pseudomonas grimontii, AF268029<br />

Pseudomonas palleroniana, AY091527<br />

Pseudomonas tolaasii, AF255336<br />

Pseudomonas extremorientalis, AF405328<br />

Pseudomonas cedrina, AF064461<br />

Pseudomonas orientalis, AF064457<br />

Pseudomonas marginalis, Z76663<br />

Pseudomonas panacis, AY787208<br />

Pseudomonas veronii, AF064460<br />

Pseudomonas migulae, AF074383<br />

Pseudomonas amygdali, Z76654<br />

Pseudomonas ficuserectae, AB021378<br />

Pseudomonas syringae , DQ318866<br />

Pseudomonas congelans, AJ492828<br />

Pseudomonas cannabina, AJ492827<br />

Pseudomonas caricapapayae, D84010<br />

Pseudomonas savastanoi, AB021402<br />

Pseudomonas cichorii, Z76658<br />

Pseudomonas tremae, AJ492826<br />

Pseudomonas mandelii, AF058286<br />

Pseudomonas frederiksbergensis, AJ249382<br />

Pseudomonas corrugata, D84012<br />

Pseudomonas kilonensis, AJ292426<br />

Pseudomonas mediterranea, AF386080<br />

Pseudomonas thivervalensis, AF100323<br />

Pseudomonas brassicacearum, AF100321<br />

Pseudomonas lini, AY035996<br />

Pseudomonas fragi, AF094733<br />

Pseudomonas psychrophila, AB041885<br />

Pseudomonas lundensis, AB021395<br />

Pseudomonas taetrolens, D84027<br />

Pseudomonas chlororaphis subsp. chlororaphis, Z76673<br />

Pseudomonas chlororaphis subsp. aureofaciens, AY509898<br />

Pseudomonas chlororaphis subsp. aurantiaca, DQ682655<br />

Pseudomonas viridiflava, AY180972<br />

Pseudomonas moorei, AM293566<br />

Pseudomonas vancouverensis, AJ011507<br />

Pseudomonas mohnii, AM293567<br />

Pseudomonas jessenii, AF068259<br />

Pseudomonas reinekei, AM293565<br />

Pseudomonas umsongensis, AF468450<br />

Pseudomonas koreensis, AF468452

---

Pseudomonas moraviensis, AY970952<br />

Pseudomonas abietaniphila, AJ011504<br />

Pseudomonas rhizosphaerae, AY152673<br />

Pseudomonas graminis, Y11150<br />

Pseudomonas lutea, AY364537<br />

Pseudomonas agarici, Z76652<br />

Pseudomonas asplenii, AB021397<br />

Pseudomonas vranovensis, AY970951<br />

Pseudomonas cremoricolorata, AB060137<br />

Pseudomonas parafulva, AB046999<br />

Pseudomonas fulva, AB046996<br />

Pseudomonas monteilii, AF064458<br />

Pseudomonas plecoglossicida, AB009457<br />

Pseudomonas mosselii, AF072688<br />

Pseudomonas oryzihabitans, D84004<br />

Pseudomonas putida, D84020<br />

Azomonas agilis, AB175652, type sp.<br />

Pseudomonas pohangensis, DQ339144<br />

Pseudomonas pachastrellae, AB125366<br />

Pseudomonas pertucinogena, AB021380<br />

Pseudomonas luteola, D84002<br />

Pseudomonas argentinensis, AY691188<br />

Pseudomonas straminea, D84023<br />

Pseudomonas flavescens, U01916<br />

Azotobacter vinelandii, AB175657<br />

Azorhizophilus paspali, AJ308318, type sp.<br />

Azotobacter nigricans subsp. nigricans, AB175651<br />

Azotobacter armeniacus, AB175655<br />

Azotobacter salinestris, AB175656<br />

Pseudomonas thermotolerans, AJ311980<br />

Pseudomonas azotifigens, AB189452<br />

Pseudomonas indica, AF302795<br />

Pseudomonas balearica, U26418<br />

Pseudomonas oleovorans, D84018<br />

Pseudomonas psychrotolerans, AJ575816<br />

Azotobacter beijerinckii, AJ308319<br />

Azotobacter chroococcum, AB175653, type sp.<br />

Pseudomonas citronellolis, Z76659<br />

Pseudomonas delhiensis, DQ339153<br />

Pseudomonas knackmussii, AF039489<br />

Pseudomonas nitroreducens, AM088473<br />

Pseudomonas jinjuensis, AF468448<br />

Pseudomonas aeruginosa, X06684, type sp.<br />

Pseudomonas otitidis, AY953147<br />

Pseudomonas resinovorans, Z76668<br />

Pseudomonas alcaligenes, D84006<br />

Pseudomonas stutzeri, AF094748<br />

Pseudomonas xanthomarina, AB176954<br />

Pseudomonas mendocina, D84016<br />

Pseudomonas alcaliphila, AB030583<br />

Pseudomonas pseudoalcaligenes, Z76666<br />

Pseudomonas anguilliseptica, X99540<br />

Pseudomonas peli, AM114534<br />

Pseudomonas guineae, AM491810<br />

Pseudomonas borbori, AM114527<br />

Pseudomonas segetis, AY770691<br />

Azomonas macrocytogenes, AB175654<br />

Cellvibrio fibrivorans, AJ289164, Pseudomonadaceae<br />

Cellvibrio ostraviensis, AJ493583, Pseudomonadaceae<br />

Cellvibrio fulvus, AF448514, Pseudomonadaceae<br />

Cellvibrio vulgaris, AF448513, Pseudomonadaceae<br />

Cellvibrio mixtus subsp. mixtus, AF448515, Pseudomonadaceae, type sp.<br />

Cellvibrio japonicus, AF452103, Pseudomonadaceae<br />

Cellvibrio gandavensis, AJ289162, Pseudomonadaceae<br />

Marinimicrobium agarilyticum, AY839870, Alteromonadaceae<br />

Marinimicrobium koreense, AY839869, Alteromonadaceae, type sp.<br />

Microbulbifer elongatus, AF500006, Alteromonadaceae<br />

Microbulbifer hydrolyticus, U58338, Alteromonadaceae, type sp.<br />

Microbulbifer salipaludis, AF479688, Alteromonadaceae<br />

Microbulbifer celer, EF486352, Alteromonadaceae<br />

Microbulbifer maritimus, AY377986, Alteromonadaceae<br />

Saccharophagus degradans , AF055269, Alteromonadaceae, type sp.<br />

Teredinibacter turnerae, AY028398, Unclassified Alteromonadales, type sp.<br />

Marinobacter algicola, AY258110, Alteromonadaceae<br />

Marinobacter salsuginis, EF028328, Alteromonadaceae<br />

Marinobacter flavimaris, AY517632, Alteromonadaceae<br />

Marinobacter lipolyticus, AY147906, Alteromonadaceae<br />

Marinobacter sediminum, AJ609270, Alteromonadaceae<br />

Marinobacter bryozoorum, AJ609271, Alteromonadaceae<br />

Marinobacter segnicrescens, EF157832, Alteromonadaceae<br />

Marinobacter salicampi, EF486354, Alteromonadaceae<br />

Marinobacter maritimus, AJ704395, Alteromonadaceae<br />

Marinobacter gudaonensis, DQ414419, Alteromonadaceae<br />

Marinobacter koreensis, DQ325514, Alteromonadaceae<br />

Marinobacter excellens, AY180101, Alteromonadaceae<br />

Marinobacter litoralis, AF479689, Alteromonadaceae<br />

Marinobacter daepoensis, AY517633, Alteromonadaceae<br />

Marinobacter vinifirmus, DQ235263, Alteromonadaceae<br />

Marinobacter hydrocarbonoclasticus, X67022, Alteromonadaceae, type sp.<br />

Marinobacter lutaoensis, AF288157, Alteromonadaceae<br />

Halovibrio denitrificans, DQ072718, Halomonadaceae<br />

Halospina denitrificans, DQ072719, Hahellaceae, type sp.<br />

Pseudomonas halophila, AB021383, Pseudomonadaceae<br />

Salicola salis, DQ129689, Halomonadaceae<br />

Salicola marasensis, DQ019934, Halomonadaceae, type sp.<br />

Oleiphilus messinensis, AJ295154, Oleiphilaceae, type sp.<br />

Hahellaceae (4:0)<br />

Endozoicomonas elysicola, AB196667, type sp.<br />

Zooshikella ganghwensis, AY130994, type sp.<br />

Hahella chejuensis , CP000155, type sp.<br />

Hahella ganghwensis, AY676463

---

Hahella ganghwensis, AY676463<br />

Alcanivoraceae (5:0)<br />

Alcanivorax borkumensis, Y12579, type sp.<br />

Alcanivorax jadensis, AJ001150<br />

Alcanivorax venustensis, AF328762<br />

Alcanivorax dieselolei, AY683537<br />

Alcanivorax balearicus, AY686709<br />

Cardiobacteriaceae (5:0)<br />

Dichelobacter nodosus, M35016, type sp.<br />

Suttonella indologenes, M35015, type sp.<br />

Suttonella ornithocola, AJ717394<br />

Cardiobacterium hominis, M35014, type sp.<br />

Cardiobacterium valvarum, AF506987<br />

Halothiobacillus halophilus, U58020, Halothiobacillaceae<br />

Halothiobacillus hydrothermalis, M90662, Halothiobacillaceae<br />

Halothiobacillus kellyi, AF170419, Halothiobacillaceae<br />

Piscirickettsia salmonis, U36941, Piscirickettsiaceae, type sp.<br />

Betaproteobacteria (326:0)<br />

Burkholderiales (230:0)<br />

Comamonadaceae (96:0)<br />

Brachymonas denitrificans, D14320<br />

Tepidicella xavieri, DQ295805, type sp.<br />

Lampropedia hyalina, AB089485<br />

Delftia acidovorans, AB021417, type sp.<br />

Delftia tsuruhatensis, AB075017<br />

Comamonas odontotermitis, DQ453128<br />

Comamonas testosteroni, M11224<br />

Comamonas koreensis, AF275377<br />

Comamonas denitrificans, AF233877<br />

Comamonas nitrativorans, AJ251577<br />

Comamonas aquatica, AJ430344<br />

Comamonas kerstersii, AJ430347<br />

Comamonas badia, AB164432<br />

Comamonas terrigena, AF078772, type sp.<br />

Alicycliphilus denitrificans, AJ418042, type sp.<br />

Giesbergeria giesbergeri, AB074522<br />

Giesbergeria sinuosa, AF078754<br />

Giesbergeria voronezhensis, AY780905, type sp.<br />

Giesbergeria anulus, AB074527<br />

Giesbergeria kuznetsovii, AY780907<br />

Diaphorobacter nitroreducens, AB064317, type sp.<br />

Acidovorax defluvii, Y18616<br />

Acidovorax delafieldii, AF078764<br />

Acidovorax facilis, AF078765, type sp.<br />

Acidovorax temperans, AF078766<br />

Acidovorax anthurii, AJ007013<br />

Acidovorax valerianellae, AJ431731<br />

Acidovorax avenae subsp. avenae, AF137505<br />

Acidovorax avenae subsp. cattleyae, AF137504<br />

Acidovorax avenae subsp. citrulli, AF137506<br />

Acidovorax konjaci, AJ420325<br />

Xylophilus ampelinus, AJ420330, Unclassified Burkholderiales, type sp.<br />

Simplicispira limi, DQ372987<br />

Simplicispira psychrophila, AF078755<br />

Simplicispira metamorpha, Y18618, type sp.<br />

Malikia granosa, AJ627188, type sp.<br />

Malikia spinosa, AB077038<br />

Macromonas bipunctata, AB077037<br />

Hydrogenophaga flava, AF078771, type sp.<br />

Hydrogenophaga pseudoflava, AF078770<br />

Hydrogenophaga palleronii, AF078769<br />

Hydrogenophaga taeniospiralis, AF078768<br />

Hydrogenophaga intermedia, AF019037<br />

Hydrogenophaga atypica, AJ585992<br />

Hydrogenophaga defluvii, AJ585993<br />

Hydrogenophaga caeni, DQ372983<br />

Xenophilus azovorans, AF285414, type sp.<br />

Polaromonas hydrogenivorans, DQ094183<br />

Polaromonas naphthalenivorans, AY166684<br />

Polaromonas aquatica, AM039830<br />

Polaromonas vacuolata, U14585, type sp.<br />

Curvibacter gracilis, AB109889, type sp.<br />

Curvibacter lanceolatus, AB021390<br />

Curvibacter delicatus, AF078756<br />

Rhodoferax fermentans, D16211, type sp.<br />

Rhodoferax ferrireducens , CP000267<br />

Variovorax dokdonensis, DQ178978<br />

Variovorax soli, DQ432053<br />

Variovorax paradoxus, AJ420329, type sp.<br />

Hylemonella gracilis, AF078753, type sp.<br />

Ottowia thiooxydans, AJ537466, type sp.<br />

Ramlibacter henchirensis, AF439400<br />

Ramlibacter tataouinensis, AF144383, type sp.<br />

Tepidimonas taiwanensis, AY845054, Unclassified Burkholderiales<br />

Tepidimonas thermarum, AM042693, Unclassified Burkholderiales<br />

Tepidimonas ignava, AF177943, Unclassified Burkholderiales, type sp.<br />

Tepidimonas aquatica, AY324139, Unclassified Burkholderiales<br />

Caldimonas manganoxidans, AB008801, type sp.<br />

Caldimonas taiwanensis, AY845052<br />

Schlegelella aquatica, DQ417336<br />

Schlegelella thermodepolymerans, AY152824, type sp.<br />

Aquabacterium citratiphilum, AF035050, Unclassified Burkholderiales<br />

Aquabacterium commune, AF035054, Unclassified Burkholderiales, type sp.<br />

Aquabacterium parvum, AF035052, Unclassified Burkholderiales<br />

Methylibium fulvum, AB245356, Unclassified Burkholderiales<br />

Rhizobacter dauci, AB297965, Pseudomonadaceae, type sp.<br />

Methylibium petroleiphilum, AF176594, Unclassified Burkholderiales, type sp.

---

Methylibium aquaticum, DQ664244, Unclassified Burkholderiales<br />

Leptothrix mobilis, X97071, Unclassified Burkholderiales<br />

Aquincola tertiaricarbonis, DQ656489, Unclassified Burkholderiales, type sp.<br />

Azohydromonas australica, AB188124, Alcaligenaceae<br />

Rubrivivax benzoatilyticus, AJ888903, Unclassified Burkholderiales<br />

Rubrivivax gelatinosus, D16213, Unclassified Burkholderiales, type sp.<br />

Azohydromonas lata, AB188125, Alcaligenaceae, type sp.<br />

Ideonella dechloratans, X72724, Unclassified Burkholderiales, type sp.<br />

Leptothrix discophora, L33975, Unclassified Burkholderiales<br />

Pelomonas aquatica, AM501435<br />

Pelomonas puraquae, AM501439<br />

Pelomonas saccharophila, AB021407, type sp.<br />

Mitsuaria chitosanitabida, AB006851, Unclassified Burkholderiales, type sp.<br />

Roseateles depolymerans, AB003623, type sp.<br />

Paucibacter toxinivorans, AY515390, Unclassified Burkholderiales, type sp.<br />

Thiomonas intermedia, AY455809, Unclassified Burkholderiales, type sp.<br />

Thiomonas perometabolis, AY455808, Unclassified Burkholderiales<br />

Thiomonas delicata, AB245481, Unclassified Burkholderiales<br />

Thiomonas cuprina, U67162, Unclassified Burkholderiales<br />

Derxia gummosa, AB089482, Alcaligenaceae, type sp.<br />

Alcaligenaceae (30:0)<br />

Achromobacter denitrificans, AJ278451<br />

Achromobacter ruhlandii, AB010840<br />

Achromobacter xylosoxidans, Y14908, type sp.<br />

Achromobacter insolitus, AY170847<br />

Achromobacter spanius, AY170848<br />

Achromobacter piechaudii, AB010841<br />

Bordetella avium, AF177666<br />

Bordetella hinzii, AF177667<br />

Bordetella trematum, AJ277798<br />

Bordetella bronchiseptica, U04948<br />

Bordetella parapertussis, U04949<br />

Bordetella holmesii, U04820<br />

Bordetella pertussis, U04950, type sp.<br />

Bordetella petrii, AJ249861<br />

Kerstersia gyiorum, AY131213, type sp.<br />

Taylorella asinigenitalis, AF067729<br />

Taylorella equigenitalis, X68645, type sp.<br />

Tetrathiobacter kashmirensis, AJ864470, type sp.<br />

Tetrathiobacter mimigardefordensis, AY880023<br />

Oligella ureolytica, AJ251912<br />

Oligella urethralis, AF133538, type sp.<br />

Brackiella oedipodis, AJ277742, type sp.<br />

Alcaligenes faecalis subsp. phenolicus, AY296718<br />

Alcaligenes faecalis subsp. faecalis, D88008, type sp.<br />

Alcaligenes faecalis subsp. parafaecalis, AJ242986<br />

Pusillimonas noertemannii, AY695828, type sp.<br />

Castellaniella defragrans, AJ005447, type sp.<br />

Castellaniella denitrificans, U82826<br />

Pigmentiphaga daeguensis, EF100696<br />

Pigmentiphaga kullae, AF282916, type sp.<br />

Burkholderiaceae (51:0)<br />

Burkholderia ferrariae, DQ514537<br />

Burkholderia nodosa, AY773189<br />

Burkholderia silvatlantica, AY965240<br />

Burkholderia mimosarum, AY752958<br />

Burkholderia tropica, AJ420332<br />

Burkholderia unamae, AY221956<br />

Burkholderia sacchari, AF263278<br />

Burkholderia kururiensis, AB024310<br />

Burkholderia tuberum, AJ302311<br />

Burkholderia phenoliruptrix, AY435213<br />

Burkholderia phymatum, AJ302312<br />

Burkholderia caribensis, Y17009<br />

Burkholderia hospita, AY040365<br />

Burkholderia terrae, AB201285<br />

Burkholderia megapolitana, AM489502<br />

Burkholderia bryophila, AM489501<br />

Burkholderia caledonica, AF215704<br />

Burkholderia ginsengisoli, AB201286<br />

Burkholderia graminis, U96939<br />

Burkholderia terricola, AY040362<br />

Burkholderia xenovorans, U86373<br />

Burkholderia phytofirmans, AY497470<br />

Burkholderia fungorum, AF215705<br />

Burkholderia phenazinium, U96936<br />

Burkholderia glathei, U96935<br />

Burkholderia sordidicola, AF512827<br />

Burkholderia caryophylli, AB021423<br />

Burkholderia soli, DQ465451<br />

Burkholderia cocovenenans, U96934<br />

Burkholderia plantarii, U96933<br />

Burkholderia glumae, U96931<br />

Burkholderia multivorans, Y18703<br />

Burkholderia ubonensis, AB030584<br />

Burkholderia vietnamiensis, AF097534<br />

Burkholderia cenocepacia, AF148556<br />

Burkholderia cepacia, U96927, type sp.<br />

Burkholderia ambifaria, AF043302<br />

Burkholderia pyrrocinia, U96930<br />

Burkholderia stabilis, AF097533<br />

Burkholderia oklahomensis, DQ108388<br />

Burkholderia mallei, AF110188<br />

Burkholderia pseudomallei, DQ108392<br />

Burkholderia thailandensis, U91838<br />

Burkholderia endofungorum, AM420302<br />

Burkholderia rhizoxinica, AJ938142<br />

Pandoraea apista, AF139173, type sp.<br />

Pandoraea norimbergensis, Y09879

---

Pandoraea pnomenusa, AY268170<br />

Pandoraea sputorum, AF139176<br />

Pandoraea pulmonicola, AF139175<br />

Limnobacter thiooxidans, AJ289885, type sp.<br />

Sutterella stercoricanis, AJ566849, Alcaligenaceae<br />

Oxalobacteraceae (34:0)<br />

Massilia aurea, AM231588<br />

Massilia timonae, U54470, type sp.<br />

Naxibacter alkalitolerans, AY679161, type sp.<br />

Telluria chitinolytica, X65590<br />

Telluria mixta, X65589, type sp.<br />

Duganella violaceinigra, AY376163<br />

Massilia albidiflava, AY965999<br />

Massilia lutea, AY966001<br />

Massilia dura, AY965998<br />

Massilia plicata, AY966000<br />

Janthinobacterium lividum, Y08846, type sp.<br />

Pseudomonas mephitica, AB021388, Pseudomonadaceae<br />

Janthinobacterium agaricidamnosum, Y08845<br />

Aquaspirillum arcticum, AB074523, Neisseriaceae<br />

Duganella zoogloeoides, D14256, type sp.<br />

Undibacterium pigrum, AM397630, type sp.<br />

Herminiimonas arsenicoxydans, AY728038<br />

Herminiimonas saxobsidens, AM493906<br />

Herminiimonas aquatilis, AM085762<br />

Herminiimonas fonticola, AY676462, type sp.<br />

Oxalicibacterium flavum, AY061962, type sp.<br />

Paucimonas lemoignei, X92555, Burkholderiaceae, type sp.<br />

Herbaspirillum hiltneri, DQ150563<br />

Herbaspirillum lusitanum, AF543312<br />

Herbaspirillum rhizosphaerae, DQ188986<br />

Herbaspirillum autotrophicum, AB074524<br />

Collimonas fungivorans, AJ310394, type sp.<br />

Herbaspirillum chlorophenolicum, AB094401<br />

Herbaspirillum frisingense, AJ238358<br />

Herbaspirillum huttiense, AB021366<br />

Herbaspirillum putei, AB109890<br />

Herbaspirillum rubrisubalbicans, AF137508<br />

Herbaspirillum seropedicae, Y10146, type sp.<br />

Oxalobacter formigenes, U49757, type sp.<br />

Cupriavidus oxalaticus, AF155567, Burkholderiaceae<br />

Cupriavidus taiwanensis, AF300324, Burkholderiaceae<br />

Cupriavidus laharis, AB054961, Burkholderiaceae<br />

Cupriavidus pinatubonensis, AB121221, Burkholderiaceae<br />

Cupriavidus basilensis, AF312022, Burkholderiaceae<br />

Cupriavidus campinensis, AF312020, Burkholderiaceae<br />

Cupriavidus necator, AF191737, Burkholderiaceae, type sp.<br />

Wautersia numazuensis, AB104447, Burkholderiaceae<br />

Cupriavidus respiraculi, AF500583, Burkholderiaceae<br />

Cupriavidus metallidurans, D87999, Burkholderiaceae<br />

Cupriavidus pauculus, AF085226, Burkholderiaceae<br />

Cupriavidus gilardii, AF076645, Burkholderiaceae<br />

Ralstonia mannitolilytica, AJ270258, Burkholderiaceae<br />

Ralstonia pickettii, AY741342, Burkholderiaceae, type sp.<br />

Ralstonia solanacearum, EF016361, Burkholderiaceae<br />

Ralstonia syzygii, AB021403, Burkholderiaceae<br />

Ralstonia insidiosa, AF488779, Burkholderiaceae<br />

Rhodocyclaceae (34:0)<br />

Azoarcus evansii, X77679<br />

Azoarcus toluvorans, L33692<br />

Azoarcus tolulyticus, L33694<br />

Azoarcus toluclasticus, AF123077<br />

Azoarcus anaerobius, Y14701<br />

Azoarcus buckelii, AJ315676<br />

Azoarcus indigens, AF011345, type sp.<br />

Azoarcus communis, AF011343<br />

Thauera terpenica, AJ005817<br />

Thauera chlorobenzoica, AF123264<br />

Thauera mechernichensis, Y17590<br />

Thauera phenylacetica, AJ315678<br />

Thauera selenatis, Y17591, type sp.<br />

Thauera aminoaromatica, AJ315677<br />

Thauera aromatica, X77118<br />

Thauera linaloolentis, AJ005816<br />

Zoogloea oryzae, AB201043<br />

Zoogloea resiniphila, AJ011506<br />

Zoogloea ramigera, X74913, type sp.<br />

Dechloromonas denitrificans, AJ318917<br />

Dechloromonas hortensis, AY277621<br />

Ferribacterium limneticum, Y17060, type sp.<br />

Quatrionicoccus australiensis, AY007722, type sp.<br />

Dechloromonas agitata, AF047462, type sp.<br />

Azonexus caeni, AB166882<br />

Azonexus fungiphilus, AF011350, type sp.<br />

Propionivibrio dicarboxylicus, Y17601, type sp.<br />

Propionivibrio pelophilus, AF016690<br />

Propionivibrio limicola, AJ307983<br />

Rhodocyclus purpureus, M34132, type sp.<br />

Rhodocyclus tenuis, D16208<br />

Azospira oryzae, AF011347, type sp.<br />

Azospira restricta, DQ974114<br />

Azovibrio restrictus, AF011346, type sp.<br />

Hydrogenophilaceae (3:0)<br />

Petrobacter succinatimandens, AY219713, type sp.<br />

Tepidiphilus margaritifer, AJ504663, type sp.<br />

Hydrogenophilus thermoluteolus, AB009828, type sp.<br />

Thiobacillus denitrificans, AJ243144, Hydrogenophilaceae

---

Thiobacillus thioparus, M79426, Hydrogenophilaceae, type sp.<br />

Thiobacillus aquaesulis, U58019, Hydrogenophilaceae<br />

Thiobacter subterraneus, AB180657, Burkholderiales, type sp.<br />

Methyloversatilis universalis, DQ442273, Rhodocyclaceae, type sp.<br />

Sterolibacterium denitrificans, AJ306683, Rhodocyclaceae, type sp.<br />

Denitratisoma oestradiolicum, AY879297, Rhodocyclaceae, type sp.<br />

Nitrosomonadaceae (3:0)<br />

Nitrosomonas europaea, AB070982, type sp.<br />

Nitrosomonas eutropha, AY123795<br />

Nitrosospira multiformis , CP000103<br />

Chitinilyticum aquatile, DQ314581, Neisseriaceae, type sp.<br />

Chitinibacter tainanensis, AY264287, Neisseriaceae, type sp.<br />

Deefgea rivuli, AM397080, Neisseriaceae, type sp.<br />

Formivibrio citricus, Y17602, Neisseriaceae, type sp.<br />

Andreprevotia chitinilytica, DQ836355, Neisseriaceae, type sp.<br />

Silvimonas terrae, AB194302, Neisseriaceae, type sp.<br />

Chitinimonas koreensis, DQ256728, Burkholderiaceae<br />

Chitinimonas taiwanensis, AY323827, Burkholderiaceae, type sp.<br />

Methylophilaceae (5:0)<br />

Methylophilus leisingeri, AB193725<br />

Methylophilus methylotrophus, AB193724, type sp.<br />

Methylotenera mobilis, DQ287786, type sp.<br />

Methylovorus mays, AY486132<br />

Methylobacillus pratensis, AY298905<br />

Leeia oryzae, DQ280369, Neisseriaceae, type sp.<br />

Neisseriaceae (34:0)<br />

Neisseria elongata subsp. glycolytica, AY167422<br />

Neisseria elongata subsp. elongata, L06171<br />

Kingella denitrificans, M22516<br />

Bergeriella denitrificans, AB087265, type sp.<br />

Simonsiella muelleri, AF328147, type sp.<br />

Neisseria animalis, AJ239288<br />

Neisseria gonorrhoeae, X07714, type sp.<br />

Neisseria polysaccharea, AJ239289<br />

Neisseria lactamica, AJ239286<br />

Neisseria flavescens, L06168<br />

Neisseria weaveri, L10738<br />

Kingella kingae, AY551999, type sp.<br />

Kingella potus, AJ629192<br />

Neisseria bacilliformis, AY560519<br />

Kingella oralis, L06164<br />

Conchiformibius kuhniae, AF328150<br />

Conchiformibius steedae, AB087261, type sp.<br />

Uruburuella suis, AJ586614, type sp.<br />

Neisseria canis, L06170<br />

Neisseria dentiae, AF487709<br />

Neisseria zoodegmatis, DQ006843<br />

Alysiella crassa, AB087264<br />

Alysiella filiformis, AF487710, type sp.<br />

Neisseria animaloris, DQ006842<br />

Vitreoscilla stercoraria, L06174<br />

Gulbenkiania mobilis, AM295491, type sp.<br />

Chromobacterium subtsugae, AY344056<br />

Chromobacterium violaceum , AE016825, type sp.<br />

Aquitalea magnusonii, DQ018117, type sp.<br />

Aquaspirillum putridiconchylium, AB076000<br />

Aquaspirillum serpens, AB074518, type sp.<br />

Laribacter hongkongensis, AF389085<br />

Microvirgula aerodenitrificans, U89333, type sp.<br />

Vogesella indigofera, AB021385, type sp.<br />

Thiovirga sulfuroxydans, AB118236, Halothiobacillaceae, type sp.<br />

Francisellaceae (4:0)<br />

Francisella philomiragia subsp. noatunensis, DQ295795<br />

Francisella philomiragia subsp. philomiragia, AY928394<br />

Francisella novicida, AY928396<br />

Francisella tularensis subsp. tularensis, Z21931, type sp.<br />

Wolbachia persica, M21292, Anaplasmataceae<br />

Caedibacter taeniospiralis, AY102612, Unclassified Thiotrichales, type sp.<br />

Fangia hongkongensis, AB176554, Unclassified Thiotrichales, type sp.<br />

Ignatzschineria larvae, AJ252143, Xanthomonadaceae, type sp.<br />

Moraxellaceae (58:0)<br />

Psychrobacter immobilis, U39399, type sp.<br />

Psychrobacter phenylpyruvicus, U46144<br />

Psychrobacter okhotskensis, AB094794<br />

Psychrobacter cryohalolentis, AY660685<br />

Psychrobacter cibarius, AY639871<br />

Psychrobacter urativorans, AJ609555<br />

Psychrobacter glacincola, AJ312213<br />

Psychrobacter frigidicola, AJ609556<br />

Psychrobacter luti, AJ430828<br />

Psychrobacter arcticus , AY444822<br />

Psychrobacter fozii, AJ430827<br />

Psychrobacter celer, AY842259<br />

Psychrobacter pacificensis, AB016057<br />

Psychrobacter nivimaris, AJ313425<br />

Psychrobacter aquimaris, AY722804<br />

Psychrobacter proteolyticus, AJ272303<br />

Psychrobacter namhaensis, AY722805<br />

Psychrobacter aquaticus, AJ584833<br />

Psychrobacter vallis, AJ584832<br />

Psychrobacter marincola, AJ309941<br />

Psychrobacter submarinus, AJ309940<br />

Psychrobacter salsus, AJ539104<br />

Psychrobacter jeotgali, AF441201<br />

Psychrobacter maritimus, AJ609272

---

Psychrobacter alimentarius, AY513645<br />

Psychrobacter faecalis, AJ421528<br />

Psychrobacter pulmonis, AJ437696<br />

Psychrobacter arenosus, AJ609273<br />

Moraxella bovoculi, DQ153089<br />

Moraxella (subgen. Branhamella Catlin 1970) ovis, AF005186<br />

Moraxella cuniculi, AF005188<br />

Moraxella (subgen. Moraxella Lwoff 1939) bovis, AF005182<br />

Moraxella (subgen. Branhamella Catlin 1970) caviae, AF005187<br />

Moraxella (subgen. Moraxella Lwoff 1939) lacunata, D64049, type sp.<br />

Moraxella equi, AF005184<br />

Moraxella caprae, DQ156148<br />

Moraxella canis, AJ269511<br />

Moraxella (subgen. Branhamella Catlin 1970) catarrhalis, AF005185, type sp.<br />

Enhydrobacter aerosaccus, AJ550856, type sp.<br />

Moraxella boevrei, DQ156147<br />

Acinetobacter grimontii, AF509828<br />

Acinetobacter junii, X81664<br />

Acinetobacter gerneri, AF509829<br />

Acinetobacter baumannii, X81660<br />

Acinetobacter radioresistens, X81666<br />

Acinetobacter baylyi, AF509820<br />

Acinetobacter towneri, AF509823<br />

Acinetobacter ursingii, AJ275038<br />

Acinetobacter parvus, AJ293691<br />

Acinetobacter bouvetii, AF509827<br />

Acinetobacter johnsonii, Z93440<br />

Acinetobacter schindleri, AJ278311<br />

Acinetobacter haemolyticus, X81662<br />

Acinetobacter calcoaceticus, AJ888983, type sp.<br />

Acinetobacter lwoffii, X81665<br />

Acinetobacter tjernbergiae, AF509825<br />

Acinetobacter tandoii, AF509830<br />

Alkanindiges illinoisensis, AF513979, type sp.<br />

Kangiella aquimarina, AY520561, Alcanivoraceae<br />

Kangiella koreensis, AY520560, Alcanivoraceae, type sp.<br />

Methylomicrobium agile, X72767, Methylococcaceae, type sp.<br />

Methylomicrobium album, X72777, Methylococcaceae<br />

Methylobacter whittenburyi, X72773, Methylococcaceae<br />

Methylomicrobium pelagicum, X72775, Methylococcaceae<br />

Methylosarcina fibrata, AF177296, Methylococcaceae, type sp.<br />

Methylosarcina quisquiliarum, AF177297, Methylococcaceae<br />

Methylomicrobium buryatense, AF307138, Methylococcaceae<br />

Methylobacter luteus, AF304195, Methylococcaceae, type sp.<br />

Methylobacter marinus, AF304197, Methylococcaceae<br />

Methylosarcina lacus, AY007296, Methylococcaceae<br />

Methylobacter psychrophilus, AF152597, Methylococcaceae<br />

Methylobacter tundripaludum, AJ414655, Methylococcaceae<br />

Methylosoma difficile, DQ119050, Methylococcaceae, type sp.<br />

Methylomonas aurantiaca, X72776, Methylococcaceae<br />

Methylomonas fodinarum, X72778, Methylococcaceae<br />

Methylomonas methanica, AF304196, Methylococcaceae, type sp.<br />

Methylomonas scandinavica, AJ131369, Methylococcaceae<br />

Methylosphaera hansonii, U67929, Methylococcaceae, type sp.<br />

Methylophaga alcalica, AF384373, Piscirickettsiaceae<br />

Methylophaga sulfidovorans, X95461, Piscirickettsiaceae<br />

Methylophaga aminisulfidivorans, DQ463161, Piscirickettsiaceae<br />

Methylophaga thalassica, X95460, Piscirickettsiaceae<br />

Methylophaga marina, X95459, Piscirickettsiaceae, type sp.<br />

Cycloclasticus pugetii, L34955, Piscirickettsiaceae, type sp.<br />

Thiotrichaceae (5:0)<br />

Thiothrix disciformis, AB042532<br />

Thiothrix eikelboomii, AB042819<br />

Thiothrix unzii, L79961<br />

Thiothrix flexilis, AB042545<br />

Leucothrix mucor, X87277, type sp.<br />

Sedimenticola selenatireducens, AF432145, Unclassified Gammaproteobacteria, type sp.<br />

Beggiatoa alba , AF110274, Thiotrichaceae, type sp.<br />

Methylohalomonas lacus, DQ834966, Unclassified Gammaproteobacteria, type sp.<br />

Chromatiaceae (35:0)<br />

Thiocapsa litoralis, AJ242772<br />

Thiocapsa rosea, AJ006062<br />

Thiocapsa roseopersicina, AF113000, type sp.<br />

Thiocapsa marina, AF112998<br />

Thiolamprovum pedioforme, Y12297, type sp.<br />

Thiobaca trueperi, AJ404006, type sp.<br />

Lamprocystis purpurea, AJ223235<br />

Lamprocystis roseopersicina, AJ006063<br />

Thiodictyon bacillosum, EF999974<br />

Thiodictyon elegans, EF999973, type sp.<br />

Thiocystis gelatinosa, Y11317<br />

Thiocystis violascens, AJ224438<br />

Thiocystis minor, Y12372<br />

Chromatium okenii, AJ223234, type sp.<br />

Thiocystis violacea, Y11315, type sp.<br />

<strong>All</strong>ochromatium minutissimum, Y12369<br />

<strong>All</strong>ochromatium warmingii, Y12365<br />

Thiorhodococcus kakinadensis, AM282561<br />

Thiorhodococcus mannitoliphagus, AJ971090<br />

Thiorhodococcus minor, Y11316, type sp.<br />

Thiorhodococcus bheemlicus, AM282559<br />

Isochromatium buderi, AJ224430, type sp.<br />

Marichromatium purpuratum, AJ224439<br />

Marichromatium gracile, X93473, type sp.<br />

Marichromatium indicum, AJ543328<br />

Marichromatium bheemlicum, AM180952<br />

Thiohalocapsa halophila, AJ002796, type sp.<br />

Thioflavicoccus mobilis, AJ010125, type sp.<br />

Thioalkalicoccus limnaeus, AJ277023, type sp.<br />

Thiococcus pfennigii, Y12373, type sp.

---

Thiococcus pfennigii, Y12373, type sp.<br />

Rhabdochromatium marinum, X84316, type sp.<br />

Thiorhodovibrio winogradskyi, AB016986, type sp.<br />

Halochromatium salexigens, X98597, type sp.<br />

Halochromatium glycolicum, X93472<br />

Halochromatium roseum, AM283535<br />

Ectothiorhodospiraceae (27:0)<br />

Thioalkalivibrio jannaschii, AF329083<br />

Thioalkalivibrio versutus, AF126546, type sp.<br />

Thioalkalivibrio nitratis, AF126547<br />

Thioalkalivibrio thiocyanoxidans, AF302081<br />

Thioalkalivibrio halophilus, AY346464<br />

Thioalkalivibrio nitratireducens, AY079010<br />

Thioalkalivibrio paradoxus, AF151432<br />

Thioalkalivibrio denitrificans, AF126545<br />

Thioalkalivibrio thiocyanodenitrificans, AY360060<br />

Thiorhodospira sibirica, AJ006530, type sp.<br />

Ectothiorhodospira haloalkaliphila, X93479<br />

Ectothiorhodospira marina, X93476<br />

Ectothiorhodospira mobilis, X93482, type sp.<br />

Ectothiorhodosinus mongolicus, AY298904, type sp.<br />

Alkalilimnicola ehrlichii , AF406554<br />

Alkalilimnicola halodurans, AJ404972, type sp.<br />

Alkalispirillum mobile, AF114783, type sp.<br />

Halorhodospira neutriphila, AJ318525<br />

Halorhodospira abdelmalekii, X93477<br />

Aquisalimonas asiatica, AM404263, type sp.<br />

Arhodomonas aquaeolei, M26631, type sp.<br />

Methylonatrum kenyense, DQ789390, Unclassified Gammaproteobacteria, type sp.<br />

Natronocella acetinitrilica, EF103128, type sp.<br />

Thioalkalispira microaerophila, AF481118, type sp.<br />

Thiohalophilus thiocyanatoxydans, DQ469584, Unclassified Gammaproteobacteria, type sp.<br />

Thiohalomonas denitrificans, EF117909, Unclassified Gammaproteobacteria, type sp.<br />

Thiohalomonas nitratireducens, DQ836238, Unclassified Gammaproteobacteria<br />

Methylococcaceae (5:0)<br />

Methylocaldum gracile, U89298, Methylococcaceae<br />

Methylocaldum szegediense, U89300, Methylococcaceae, type sp.<br />

Methylocaldum tepidum, U89297, Methylococcaceae<br />

Methylococcus capsulatus, AJ563935, Methylococcaceae, type sp.<br />

Methylococcus thermophilus, X73819, Methylococcaceae<br />

Methylothermus thermalis, AY829009, Methylococcaceae, type sp.<br />

Methylohalobius crimeensis, AJ581837, Methylococcaceae, type sp.<br />

Acidithiobacillaceae (4:0)<br />

Acidithiobacillus albertensis, AJ459804<br />

Acidithiobacillus thiooxidans, Y11596, type sp.<br />

Acidithiobacillus ferrooxidans, AF465604<br />

Acidithiobacillus caldus, Z29975<br />

<strong>The</strong>rmithiobacillus tepidarius, AJ459801, <strong>The</strong>rmithiobacillaceae, type sp.<br />

Nitrosococcus oceani , CP000127, Chromatiaceae<br />

Xanthomonadaceae (84:0)<br />

Xanthomonas hortorum, Y10759<br />

Xanthomonas vasicola, Y10755<br />

Xanthomonas arboricola, Y10757<br />

Xanthomonas codiaei, Y10765<br />

Xanthomonas fragariae, X95920<br />

Xanthomonas bromi, Y10764<br />

Pseudomonas cissicola, AB021399<br />

Xanthomonas cassavae, Y10762<br />

Xanthomonas pisi, Y10758<br />

Xanthomonas oryzae, X95921<br />

Xanthomonas populi, X95922<br />

Xanthomonas campestris, AE012505, type sp.<br />

Xanthomonas theicola, Y10763<br />

Xanthomonas vesicatoria, Y10761<br />

Xanthomonas cynarae, AF208315<br />

Xanthomonas cucurbitae, Y10760<br />

Xanthomonas axonopodis, X95919<br />

Pseudoxanthomonas kaohsiungensis, AY650027<br />

Pseudoxanthomonas koreensis, AY550263<br />

Pseudoxanthomonas daejeonensis, AY550264<br />

Pseudoxanthomonas japonensis, AB008507<br />

Pseudoxanthomonas mexicana, AF273082<br />

Pseudoxanthomonas taiwanensis, AF427039<br />

Pseudoxanthomonas suwonensis, AY927994<br />

Pseudoxanthomonas broegbernensis, AJ012231, type sp.<br />

Pseudoxanthomonas kalamensis, AY686710<br />

Pseudoxanthomonas yeongjuensis, DQ438977<br />

Pseudoxanthomonas spadix, AM418384<br />

Stenotrophomonas dokdonensis, DQ178977<br />

Xanthomonas translucens, X99299<br />

Xanthomonas melonis, Y10756<br />

Xanthomonas hyacinthi, Y10754<br />

Xanthomonas albilineans, X95918<br />

Xanthomonas sacchari, Y10766<br />

Pseudomonas boreopolis, AB021391<br />

Xylella fastidiosa, AF192343, type sp.<br />

Stenotrophomonas nitritireducens, AJ012229<br />

Stenotrophomonas terrae, AM403589<br />

Stenotrophomonas acidaminiphila, AF273080<br />

Pseudomonas pictorum, AJ131116, Pseudomonadaceae<br />

Stenotrophomonas humi, AM403587<br />

Stenotrophomonas koreensis, AB166885<br />

Pseudomonas hibiscicola, AB021405, Pseudomonadaceae<br />

Pseudomonas beteli, AB021406, Pseudomonadaceae<br />

Stenotrophomonas maltophilia, AB294553, type sp.<br />

Pseudomonas geniculata, AB021404, Pseudomonadaceae<br />

Stenotrophomonas rhizophila, AJ293463

---

Luteimonas composti, DQ846687<br />

Luteimonas mephitis, AJ012228, type sp.<br />

Lysobacter niabensis, DQ462461<br />

Lysobacter yangpyeongensis, DQ191179<br />

Lysobacter koreensis, AB166878<br />

Lysobacter enzymogenes, AJ298291, type sp.<br />

Lysobacter antibioticus, AB019582<br />

Lysobacter gummosus, AB161361<br />

Lysobacter concretionis, AB161359<br />

Lysobacter defluvii, AM283465<br />

Lysobacter daejeonensis, DQ191178<br />

Lysobacter niastensis, DQ462462<br />

<strong>The</strong>rmomonas fusca, AJ519986<br />

<strong>The</strong>rmomonas koreensis, DQ154906<br />

<strong>The</strong>rmomonas brevis, AJ519989<br />

<strong>The</strong>rmomonas haemolytica, AJ300185, type sp.<br />

<strong>The</strong>rmomonas hydrothermalis, AF542054<br />

Lysobacter brunescens, AB161360<br />

Silanimonas lenta, AY557615, type sp.<br />

Arenimonas malthae, DQ239766<br />

Arenimonas donghaensis, DQ411038, type sp.<br />

Aspromonas composti, AM229324, type sp.<br />

Dokdonella fugitiva, AJ969432<br />

Dokdonella koreensis, AY987368, type sp.<br />

Rhodanobacter lindaniclasticus, AF039167, type sp.<br />

Rhodanobacter thiooxydans, AB286179<br />

Rhodanobacter fulvus, AB100608<br />

Rhodanobacter spathiphylli, AM087226<br />

Rhodanobacter terrae, EF166076<br />

Rhodanobacter ginsengisoli, EF166075<br />

Frateuria aurantia, AB091194, type sp.<br />

Dyella yeojuensis, DQ181549<br />

Luteibacter rhizovicinus, AJ580498, type sp.<br />

Fulvimonas soli, AJ311653, type sp.<br />

Dyella japonica, AB110498, type sp.<br />

Dyella koreensis, AY884571<br />

Aquimonas voraii, AY544768, type sp.<br />

Hydrocarboniphaga effusa, AY363245, Sinobacteraceae, type sp.<br />

Nevskia ramosa, AJ001010, Sinobacteraceae, type sp.<br />

Solimonas soli, EF067861, Unclassified Gammaproteobacteria, type sp.<br />

Salinisphaera shabanensis, AJ421425, Salinisphaeraceae, type sp.<br />

Alphaproteobacteria (671:0)<br />

Methylobacteriaceae (26:0)<br />

Methylobacterium lusitanum, AB175635<br />

Methylobacterium podarium, AF514774<br />

Methylobacterium rhodesianum, AB175642<br />

Methylobacterium populi, AY251818<br />

Methylobacterium thiocyanatum, U58018<br />

Methylobacterium chloromethanicum, AB175630<br />

Methylobacterium dichloromethanicum, AB175631<br />

Methylobacterium zatmanii, AB175647<br />

Methylobacterium aminovorans, AB175629<br />

Methylobacterium extorquens, D32224<br />

Methylobacterium suomiense, AB175645<br />

Methylobacterium salsuginis, EF015478<br />

Methylobacterium aquaticum, AJ635303<br />

Methylobacterium platani, EF426729<br />

Methylobacterium variabile, AJ851087<br />

Methylobacterium isbiliense, AJ888239<br />

Methylobacterium nodulans, AF220763<br />

Methylobacterium rhodinum, AB175644<br />

Methylobacterium organophilum, AB175638, type sp.<br />

Methylobacterium fujisawaense, AJ250801<br />

Methylobacterium oryzae, AY683045<br />

Methylobacterium radiotolerans, D32227<br />

Methylobacterium mesophilicum, AB175636<br />

Methylobacterium hispanicum, AJ635304<br />

Methylobacterium adhaesivum, AM040156<br />

Methylobacterium jeotgali, DQ471331<br />

Balneimonas flocculans, AB098515, Bradyrhizobiaceae, type sp.<br />

Bosea eneae, AF288300, Bradyrhizobiaceae<br />

Bosea vestrisii, AF288306, Bradyrhizobiaceae<br />

Bosea thiooxidans, AJ250796, Bradyrhizobiaceae, type sp.<br />

Bosea minatitlanensis, AF273081, Bradyrhizobiaceae<br />

Bosea massiliensis, AF288309, Bradyrhizobiaceae<br />

Chelatococcus asaccharovorans, AJ294349, Beijerinckiaceae, type sp.<br />

Bradyrhizobiaceae (22:0)<br />

Nitrobacter alkalicus, AF069956<br />

Nitrobacter winogradskyi, CP000115, type sp.<br />

Nitrobacter vulgaris, AM114522<br />

Nitrobacter hamburgensis, L11663<br />

Afipia felis , M65248, type sp.<br />

Pseudomonas carboxydohydrogena, AB021393, Pseudomonadaceae<br />

Afipia clevelandensis, M69186<br />

Rhodopseudomonas faecalis, AF123085<br />

Rhodopseudomonas rhenobacensis, AB087719<br />

Rhodopseudomonas palustris, L11664, type sp.<br />

Agromonas oligotrophica, D78366, type sp.<br />

Blastobacter denitrificans, AF338176<br />

Bradyrhizobium betae, AY372184<br />

Bradyrhizobium liaoningense, AF208513<br />

Bradyrhizobium yuanmingense, AF193818<br />

Bradyrhizobium canariense, AJ558025<br />

Bradyrhizobium japonicum, U69638, type sp.<br />

Rhizobium lupini, X87273, Rhizobiaceae<br />

Afipia birgiae, AF288304<br />

Afipia broomeae, U87759<br />

Afipia massiliensis, AY029562

---

Bradyrhizobium elkanii, U35000<br />

Pseudolabrys taiwanensis, DQ062742, Xanthobacteraceae, type sp.<br />

Labrys methylaminiphilus, AB236172, Xanthobacteraceae<br />

Labrys neptuniae, DQ417335, Xanthobacteraceae<br />

Labrys miyagiensis, AB236170, Xanthobacteraceae<br />

Labrys monachus, AJ535707, Xanthobacteraceae<br />

Labrys okinawensis, AB236169, Xanthobacteraceae<br />

Methylocystaceae (7:0)<br />

Methylosinus sporium, Y18946<br />

Methylosinus trichosporium, Y18947, type sp.<br />

Methylocystis parvus, Y18945, type sp.<br />

Methylocystis echinoides, AJ458473<br />

Methylocystis hirsuta, DQ364433<br />

Methylocystis rosea, AJ414656<br />

Methylocystis heyeri, AM283543<br />

Blastochloris sulfoviridis, D86514, Hyphomicrobiaceae<br />

Blastochloris viridis, AF084495, Hyphomicrobiaceae, type sp.<br />

Rhodoplanes elegans, D25311, Hyphomicrobiaceae<br />

Rhodoplanes roseus, D25313, Hyphomicrobiaceae, type sp.<br />

Beijerinckiaceae (9:0)<br />

Beijerinckia indica subsp. lacticogenes, AJ563931<br />

Beijerinckia indica subsp. indica, AJ563930, type sp.<br />

Beijerinckia derxii subsp. venezuelae, AJ563934<br />

Beijerinckia derxii subsp. derxii, AJ563933<br />

Beijerinckia mobilis, AJ563932<br />

Methylocella silvestris, AJ491847<br />

Methylocella tundrae, AJ555244<br />

Methylocella palustris, Y17144, type sp.<br />

Methylocapsa acidiphila, AJ278726, type sp.<br />

Rhodoblastus sphagnicola, AM040096, Bradyrhizobiaceae<br />

Pleomorphomonas koreensis, AB127972, Methylocystaceae<br />

Pleomorphomonas oryzae, AB159680, Methylocystaceae, type sp.<br />

Kaistia adipata, AY039817, Rhizobiaceae, type sp.<br />

Kaistia granuli, AB244762, Rhizobiaceae<br />

Prosthecomicrobium pneumaticum, AB017203, Hyphomicrobiaceae, type sp.<br />

Hyphomicrobium facile subsp. tolerans, Y14311, Hyphomicrobiaceae<br />

Hyphomicrobium facile subsp. ureaphilum, Y14310, Hyphomicrobiaceae<br />

Hyphomicrobium facile subsp. facile, Y14309, Hyphomicrobiaceae<br />

Hyphomicrobium chloromethanicum, AF198623, Hyphomicrobiaceae<br />

Hyphomicrobium methylovorum, Y14307, Hyphomicrobiaceae<br />

Hyphomicrobium denitrificans, Y14308, Hyphomicrobiaceae<br />

Hyphomicrobium sulfonivorans, AF235089, Hyphomicrobiaceae<br />

Hyphomicrobium hollandicum, Y14303, Hyphomicrobiaceae<br />

Hyphomicrobium zavarzinii, Y14305, Hyphomicrobiaceae<br />

Filomicrobium fusiforme, Y14313, Hyphomicrobiaceae, type sp.<br />

Pedomicrobium australicum, X97693, Hyphomicrobiaceae<br />

Devosia neptuniae, AF469072, Hyphomicrobiaceae<br />

Devosia limi, AJ786801, Hyphomicrobiaceae<br />

Devosia subaequoris, AM293857, Hyphomicrobiaceae<br />

Devosia riboflavina, AJ549086, Hyphomicrobiaceae, type sp.<br />

Devosia soli, DQ303125, Hyphomicrobiaceae<br />

Devosia insulae, EF012357, Hyphomicrobiaceae<br />

Xanthobacteraceae (17:0)<br />

Angulomicrobium amanitiforme, AJ535709, Hyphomicrobiaceae<br />

Angulomicrobium tetraedrale, AJ535708, Hyphomicrobiaceae, type sp.<br />

Methylorhabdus multivorans, AF004845, Hyphomicrobiaceae, type sp.<br />

Starkeya novella, D32247, type sp.<br />

Starkeya koreensis, AB166877<br />

Ancylobacter rudongensis, AY056830<br />

Ancylobacter aquaticus, M62790, type sp.<br />

Ancylobacter vacuolatus, AY211515<br />

Ancylobacter polymorphus, AY211516<br />

Xanthobacter autotrophicus, X94201, type sp.<br />

Xanthobacter viscosus, AF399970<br />

Azorhizobium doebereinerae, AF391130<br />

Azorhizobium caulinodans, D11342, type sp.<br />

Xanthobacter aminoxidans, AF399969<br />

Xanthobacter flavus, X94199<br />

Xanthobacter tagetidis, X99469<br />

Xanthobacter agilis, X94198<br />

Caulobacteraceae (26:0)<br />

Asticcacaulis benevestitus, AM087199<br />

Asticcacaulis taihuensis, AY500141<br />

Brevundimonas mediterranea, AJ227801<br />

Streptomyces longisporoflavus, DQ442520, Streptomycetaceae<br />

Brevundimonas bacteroides, AJ227782<br />

Brevundimonas intermedia, AJ227786<br />

Brevundimonas nasdae, AB071954<br />

Brevundimonas vesicularis, AJ227780<br />

Brevundimonas aurantiaca, AJ227787<br />

Brevundimonas diminuta, AB021415, type sp.<br />

Brevundimonas terrae, DQ335215<br />

Mycoplana bullata, D12785, Brucellaceae<br />

Brevundimonas lenta, EF363713<br />

Brevundimonas subvibrioides, AJ227784<br />

Brevundimonas variabilis, AJ227783<br />

Brevundimonas alba, AJ227785<br />

Brevundimonas kwangchunensis, AY971368<br />

Brevundimonas aveniformis, DQ372984<br />

Caulobacter fusiformis, AJ227759<br />

Caulobacter segnis, AB023427<br />

Caulobacter vibrioides, AJ009957, type sp.<br />

Caulobacter henricii, AJ227758<br />

Phenylobacterium immobile, Y18216, type sp.<br />

Phenylobacterium koreense, AB166881<br />

Phenylobacterium falsum, AJ717391<br />

Phenylobacterium lituiforme, AY534887

---

Phenylobacterium lituiforme, AY534887<br />

Meganema perideroedes, AF180468, Methylobacteriaceae, type sp.<br />

Methylopila capsulata, AF004844, Methylocystaceae, type sp.<br />

Pseudovibrio ascidiaceicola, AB175663, Rhodobacteraceae<br />

Pseudovibrio japonicus, AB246748, Rhodobacteraceae<br />

Pseudovibrio denitrificans, AY486423, Rhodobacteraceae, type sp.<br />

Nesiotobacter exalbescens, AF513441, Rhodobacteraceae, type sp.<br />

Roseibium denhamense, D85832, Rhodobacteraceae, type sp.<br />

Roseibium hamelinense, D85836, Rhodobacteraceae<br />

Labrenzia alexandrii, AJ582083, Rhodobacteraceae, type sp.<br />

Labrenzia marina, AY628423, Rhodobacteraceae<br />

Labrenzia alba, AJ878875, Rhodobacteraceae<br />

Labrenzia aggregata, AAUW01000023, Rhodobacteraceae<br />

Pannonibacter phragmitetus, AJ400704, Rhodobacteraceae, type sp.<br />

Stappia stellulata, D88525, Rhodobacteraceae, type sp.<br />

Rhizobiaceae (41:0)<br />

Rhizobium rhizogenes, D14501<br />

Rhizobium rubi, AY626395<br />

Rhizobium lusitanum, AY738130<br />

Rhizobium tropici, U89832<br />

Rhizobium leguminosarum, U29386, type sp.<br />

Rhizobium phaseoli, EF141340<br />

Rhizobium etli, U28916<br />

Rhizobium hainanense, U71078<br />

Rhizobium gallicum, U86343<br />

Rhizobium yanglingense, AF003375<br />

Rhizobium indigoferae, AF364068<br />

Rhizobium mongolense, U89817<br />

Rhizobium sullae, Y10170<br />

Arthrobacter viscosus, AJ639832, Micrococcaceae<br />

Aurantimonas ureilytica, DQ883810, Aurantimonadaceae<br />

Aurantimonas altamirensis, DQ372921, Aurantimonadaceae<br />

Fulvimarina pelagi, AY178860, Aurantimonadaceae, type sp.<br />

Martelella mediterranea, AY649762, Aurantimonadaceae, type sp.<br />

Rhizobium undicola, Y17047<br />

Rhizobium vitis, U45329<br />

Rhizobium cellulosilyticum, DQ855276<br />

Rhizobium galegae, D11343<br />

Rhizobium huautlense, AF025852<br />

Rhizobium loessense, AF364069<br />

Rhizobium radiobacter, AB247615<br />

Rhizobium larrymoorei, Z30542<br />

Rhizobium daejeonense, AY341343<br />

Blastobacter aggregatus, X73041, Bradyrhizobiaceae<br />

Blastobacter capsulatus, X73042, Bradyrhizobiaceae<br />

Rhizobium giardinii, U86344<br />

Sinorhizobium morelense, AY024335<br />

Ensifer adhaerens, AM181733, type sp.<br />

Ensifer fredii, X67231<br />

Sinorhizobium americanum, AF506513<br />

Ensifer xinjiangensis, AM181732<br />

Ensifer meliloti, D14509<br />

Ensifer arboris, Z78204<br />

Ensifer kummerowiae, AY034028<br />

Ensifer saheli, X68390<br />

Ensifer kostiensis, AM181747<br />

Ensifer terangae, X68388<br />

Shinella zoogloeoides, AB238789, Rhodocyclaceae<br />

Shinella granuli, AB187585, Rhodocyclaceae, type sp.<br />

Brucellaceae (22:0)<br />

Brucella melitensis , AY594215, type sp.<br />

Brucella neotomae, AY594216<br />

Brucella ovis, L26168<br />

Brucella canis, L37584<br />

Brucella suis, AM158980<br />

Brucella ceti, AM158982<br />

Brucella pinnipedialis, AM158981<br />

Brucella abortus, AM158979<br />

Ochrobactrum anthropi, U70978, type sp.<br />

Ochrobactrum intermedium, AM114411<br />

Ochrobactrum cytisi, AY776289<br />

Ochrobactrum lupini, AY457038<br />

Ochrobactrum tritici, AJ242584<br />

Ochrobactrum grignonense, AJ242581<br />

Ochrobactrum pseudogrignonense, AM422371<br />

Ochrobactrum haematophilum, AM422370<br />

Ochrobactrum gallinifaecis, AJ519939<br />

Ochrobactrum oryzae, AM041247<br />

Ochrobactrum pseudintermedium, DQ365921<br />

Pseudochrobactrum asaccharolyticum, AM180485, type sp.<br />

Pseudochrobactrum saccharolyticum, AM180484<br />

Pseudochrobactrum kiredjianiae, AM263420<br />

Bartonellaceae (19:0)<br />

Bartonella chomelii, AY254309<br />

Bartonella schoenbuchensis, AJ278187<br />

Bartonella bovis, AF293391<br />

Bartonella capreoli, AF293389<br />

Bartonella henselae, BX897699<br />

Bartonella koehlerae, AF076237<br />

Bartonella bacilliformis, M65249, type sp.<br />

Bartonella quintana, M73228<br />

Bartonella doshiae, Z31351<br />

Bartonella vinsonii subsp. vinsonii, L01259<br />

Bartonella vinsonii subsp. arupensis, AF214558<br />

Bartonella alsatica, AJ002139<br />

Bartonella vinsonii subsp. berkhoffii, L35052<br />

Bartonella elizabethae, L01260<br />

Bartonella tribocorum, AJ003070<br />

Bartonella grahamii, Z31349

---

Bartonella grahamii, Z31349<br />

Bartonella birtlesii, AF204274<br />

Bartonella taylorii, Z31350<br />

Bartonella clarridgeiae, X89208<br />

Mycoplana ramosa, D13944, Brucellaceae<br />

Mycoplana dimorpha, D12786, Brucellaceae, type sp.<br />

Phyllobacteriaceae (33:0)<br />

Phyllobacterium catacumbae, AY636000<br />

Phyllobacterium ifriqiyense, AY785325<br />

Phyllobacterium trifolii, AY786080<br />

Phyllobacterium bourgognense, AY785320<br />

Phyllobacterium brassicacearum, AY785319<br />

Phyllobacterium rubiacearum, AY785316<br />

Phyllobacterium myrsinacearum, AY785315, type sp.<br />

Phyllobacterium leguminum, AJ968695<br />

Ahrensia kielensis, D88524, Rhodobacteraceae, type sp.<br />

Nitratireductor aquibiodomus, AF534573, type sp.<br />

Hoeflea alexandrii, AJ786600<br />

Hoeflea marina, AY598817, type sp.<br />

Aquamicrobium defluvii, Y15403, type sp.<br />

Defluvibacter lusatiensis, AJ132378, type sp.<br />

Pseudaminobacter defluvii, D32248<br />

Pseudaminobacter salicylatoxidans, AF072542, type sp.<br />

Aminobacter aganoensis, AJ011760<br />

Aminobacter niigataensis, AJ011761<br />

Aminobacter ciceronei, AF034798<br />

Aminobacter aminovorans, AJ011759, type sp.<br />

Aminobacter lissarensis, AF107722<br />

Mesorhizobium chacoense, AJ278249<br />

Mesorhizobium ciceri, U07934<br />

Mesorhizobium loti, D14514, type sp.<br />

Mesorhizobium albiziae, DQ100066<br />

Mesorhizobium mediterraneum, AM181745<br />

Mesorhizobium temperatum, AF508208<br />

Mesorhizobium tianshanense, AF041447<br />

Mesorhizobium amorphae, AF041442<br />

Mesorhizobium septentrionale, AF508207<br />

Mesorhizobium huakuii, D13431<br />

Mesorhizobium plurifarium, Y14158<br />

Mesorhizobium thiogangeticum, AJ864462<br />

Rhodobiaceae (5:0)<br />

Rhodopseudomonas julia, AB087720, Bradyrhizobiaceae<br />

Rhodobium marinum, D30790<br />

Anderseniella baltica, AM712634, type sp.<br />

Rhodobium gokarnense, AM180706<br />

Rhodobium orientis, D30792, type sp.<br />

Hyphomonadaceae (17:0)<br />

Hyphomonas hirschiana, AF082794<br />

Hyphomonas neptunium , CP000158<br />

Hyphomonas rosenbergii, AF082795<br />

Hyphomonas polymorpha, AJ227813, type sp.<br />

Hyphomonas oceanitis, AF082797<br />

Hyphomonas johnsonii, AF082791<br />

Hyphomonas adhaerens, AF082790<br />

Hyphomonas jannaschiana, AJ227814<br />

Hirschia baltica, AJ421782, type sp.<br />

Robiginitomaculum antarcticum, EF495229, type sp.<br />

Maricaulis salignorans, AJ227806<br />

Maricaulis washingtonensis, AJ227804<br />

Maricaulis maris, AJ227802, type sp.<br />

Maricaulis parjimensis, AJ227808<br />

Maricaulis virginensis, AJ301667<br />

Oceanicaulis alexandrii, AJ309862, type sp.<br />

Woodsholea maritima, AJ578476, Rhodobacteraceae, type sp.<br />

Parvularcula bermudensis, AF544015, Parvularculaceae, type sp.<br />

Parvibaculum lavamentivorans, AY387398, Rhodobiaceae, type sp.<br />

Sphingomonadales (97:0)<br />

Sphingomonadaceae (80:0)<br />

Sphingomonas paucimobilis, AM237364, type sp.<br />

Sphingomonas sanguinis, D84529<br />

Sphingomonas pseudosanguinis, AM412238<br />

Sphingomonas roseiflava, D84520<br />

Sphingomonas yabuuchiae, AB071955<br />

Sphingomonas parapaucimobilis, D13724<br />

Sphingomonas azotifigens, AB033947<br />

Sphingomonas trueperi, X97776<br />

Sphingomonas pituitosa, AJ243751<br />

Sphingomonas phyllosphaerae, AY453855<br />

Sphingomonas yunnanensis, AY894691<br />

Sphingomonas desiccabilis, AJ871435<br />

Sphingomonas molluscorum, AB248285<br />

Sphingomonas panni, AJ575818<br />

Sphingomonas dokdonensis, DQ178975<br />

Sphingomonas mucosissima, AM229669<br />

Asticcacaulis biprosthecium, AJ007799, Caulobacteraceae<br />

Caulobacter leidyi, AJ227812, Caulobacteraceae<br />

Asticcacaulis excentricus, AJ007800, Caulobacteraceae, type sp.<br />

Sphingomonas abaci, AJ575817<br />

Sphingomonas aquatilis, AF131295<br />

Sphingomonas melonis, AB055863<br />

Sphingomonas aurantiaca, AJ429236<br />

Sphingomonas faeni, AJ429239<br />

Sphingomonas aerolata, AJ429240<br />

Sphingomonas koreensis, AF131296<br />

Sphingomonas soli, AB166883<br />

Sphingomonas asaccharolytica, Y09639<br />

Sphingomonas pruni, Y09637

---

Sphingomonas pruni, Y09637<br />

Sphingomonas mali, Y09638<br />

Sphingomonas echinoides, AB021370<br />

Sphingomonas oligophenolica, AB018439<br />

Sandaracinobacter sibiricus, Y10678, type sp.<br />

Sandarakinorhabdus limnophila, AY902680, type sp.<br />

Sphingomonas jaspsi, AB264131<br />

Sphingomonas kaistensis, AY769083<br />

Sphingosinicella microcystinivorans, AB084247, type sp.<br />

Sphingosinicella xenopeptidilytica, AY950663<br />

Sphingomonas haloaromaticamans, X94101<br />

Sphingomonas wittichii, AB021492<br />

Sphingomonas fennica, AJ009706<br />

Zymomonas mobilis subsp. mobilis, AF281031, type sp.<br />

Zymomonas mobilis subsp. pomaceae, AF281032<br />

Sphingobium francense, AY519130<br />

Sphingobium indicum, AY519129<br />

Sphingobium japonicum, AF039168<br />

Sphingomonas chlorophenolica, X87161<br />

Sphingobium chungbukense, AF159257<br />

Sphingomonas herbicidovorans, AB022428<br />

Sphingobium fuliginis, DQ092757<br />

Sphingobium cloacae, AB040739<br />

Sphingobium amiense, AB047364<br />

Sphingomonas yanoikuyae, D13728<br />

Sphingobium olei, AM489507<br />

Sphingobium xenophagum, X94098<br />

Sphingobium aromaticiconvertens, AM181012<br />

Sphingomonas suberifaciens , D13737<br />

Blastomonas natatoria, AB024288, type sp.<br />

Sphingomonas ursincola, AB024289<br />

Novosphingobium nitrogenifigens, DQ448852<br />

Sphingomonas stygia, AB025013<br />

Novosphingobium taihuense, AY500142<br />

Novosphingobium lentum, AJ303009<br />

Novosphingobium hassiacum, AJ416411<br />

Novosphingobium tardaugens, AB070237<br />

Sphingomonas subterranea, AB025014<br />

Sphingomonas aromaticivorans, CP000248<br />

Sphingomonas capsulata, D16147<br />

Sphingomonas rosa, D13945<br />

Novosphingobium resinovorum, EF029110<br />

Sphingopyxis alaskensis, Z73631<br />

Sphingomonas macrogoltabidus, D13723<br />

Sphingopyxis chilensis, AF367204<br />

Sphingopyxis taejonensis, AF131297<br />

Sphingopyxis witflariensis, AJ416410<br />

Sphingomonas adhaesiva, D13722<br />

Sphingomonas terrae, D13727<br />

Sphingopyxis baekryungensis, AY608604<br />

Sphingopyxis flavimaris, AY554010<br />

Novosphingobium pentaromativorans, AF502400<br />

Erythrobacteraceae (17:0)<br />

Porphyrobacter neustonensis, AB033327, type sp.<br />

Porphyrobacter tepidarius, AB033328<br />

Porphyrobacter sanguineus, AB021493<br />

Erythromicrobium ramosum, AF465837, type sp.<br />

Porphyrobacter donghaensis, AY559428<br />

Erythrobacter litoralis, AF465836<br />

Porphyrobacter cryptus, AF465834<br />

Porphyrobacter dokdonensis, DQ011529<br />

Erythrobacter aquimaris, AY461441<br />

Erythrobacter longus, AF465835, type sp.<br />

Erythrobacter seohaensis, AY562219<br />

Erythrobacter citreus, AF118020<br />

Erythrobacter vulgaris, AY706935<br />

Erythrobacter flavus, AF500004<br />

Erythrobacter gaetbuli, AY562220<br />

Altererythrobacter luteolus, AY739662<br />

Altererythrobacter epoxidivorans, DQ304436, type sp.<br />

Rhodobacteraceae (128:0)<br />

Ruegeria atlantica, D88526, type sp.<br />

Silicibacter lacuscaerulensis, U77644, type sp.<br />

Ruegeria mobilis, AB255401<br />

Ruegeria pelagia, DQ916141<br />

Silicibacter pomeroyi, AF098491<br />

Pseudoruegeria aquimaris, DQ675021, type sp.<br />

Roseovarius mucosus, AJ534215<br />

Roseovarius tolerans, Y11551, type sp.<br />

Roseovarius nubinhibens , AF098495<br />

Jannaschia helgolandensis, AJ438157, type sp.<br />

Jannaschia rubra, AJ748747<br />

Jannaschia seosinensis, AY906862<br />

Jannaschia donghaensis, EF202612<br />

Thalassobacter stenotrophicus, AJ631302, type sp.<br />

Maribius pelagius, DQ514326<br />

Maribius salinus, AY906863, type sp.<br />

Maritimibacter alkaliphilus, DQ915443, type sp.<br />

Roseovarius crassostreae, AF114484<br />

Octadecabacter antarcticus, U14583<br />

Octadecabacter arcticus, U73725, type sp.<br />

Nereida ignava, AJ748748, type sp.<br />

Phaeobacter gallaeciensis, Y13244, type sp.<br />

Phaeobacter inhibens, AY177712<br />

Phaeobacter daeponensis, DQ981486<br />

Leisingera methylohalidivorans, AY005463, type sp.<br />

Palleronia marisminoris, AY926462, type sp.<br />

Salipiger mucosus, AY527274, type sp.<br />

Pelagibaca bermudensis, DQ178660, type sp.

---

Marinovum algicola, X78315, type sp.<br />

Thalassococcus halodurans, DQ397336, type sp.<br />

Thalassobius gelatinovorus, D88523<br />

Thalassobius mediterraneus, AJ878874, type sp.<br />

Thalassobius aestuarii, AY442178<br />

Shimia marina, AY962292, type sp.<br />

Loktanella atrilutea, AB246747<br />

Loktanella fryxellensis, AJ582225<br />

Loktanella salsilacus, AJ440997, type sp.<br />

Loktanella agnita, AY682198<br />

Loktanella vestfoldensis, AJ582226<br />

Loktanella hongkongensis, AY600300<br />

Loktanella koreensis, DQ344498<br />

Loktanella maricola, EF202613<br />

Loktanella rosea, AY682199<br />

Sulfitobacter pontiacus, Y13155, type sp.<br />

Sulfitobacter litoralis, DQ097527<br />

Sulfitobacter brevis, Y16425<br />

Sulfitobacter marinus, DQ683726<br />

Sulfitobacter mediterraneus, Y17387<br />

Roseobacter denitrificans, L01784<br />

Roseobacter litoralis, X78312, type sp.<br />

Sulfitobacter delicatus, AY180103<br />

Sulfitobacter dubius, AY180102<br />

Oceanibulbus indolifex, AJ550939, type sp.<br />

Sulfitobacter donghicola, EF202614<br />

Sulfitobacter guttiformis, Y16427<br />

Antarctobacter heliothermus, Y11552, type sp.<br />

Sagittula stellata, U58356, type sp.<br />

Donghicola eburneus, DQ667965, type sp.<br />

Ketogulonicigenium robustum, AF136850<br />

Ketogulonicigenium vulgare, AF136849, type sp.<br />

Roseivivax halodurans, D85829, type sp.<br />

Roseivivax halotolerans, D85831<br />

Citreimonas salinaria, AY962295, type sp.<br />

Rubellimicrobium thermophilum, AJ844281, type sp.<br />

Citreicella thiooxidans, AY639887, type sp.<br />

Yangia pacifica, AJ877265, type sp.<br />

Oceanicola batsensis, AY424898<br />

Oceanicola marinus, DQ822569<br />

Oceanicola nanhaiensis, DQ414420<br />

Oceanicola granulosus, AY424896, type sp.<br />

Roseisalinus antarcticus, AJ605747, type sp.<br />

Roseicyclus mahoneyensis, AJ315682, type sp.<br />

Dinoroseobacter shibae, AJ534211, type sp.<br />

Wenxinia marina, DQ640643, type sp.<br />

Amaricoccus macauensis, U88042<br />

Amaricoccus veronensis, U88043<br />

Amaricoccus tamworthensis, U88044<br />

Amaricoccus kaplicensis, U88041, type sp.<br />

Catellibacterium nectariphilum, AB101543, type sp.<br />

Albidovulum inexpectatum, AF465833, type sp.<br />

Rhodobacter blasticus, DQ342322<br />

Pseudorhodobacter ferrugineus, D88522, type sp.<br />

Rhodobacter changlensis, AM399030<br />

Rhodobacter azotoformans, D70846<br />

Rhodobacter sphaeroides, X53853<br />

Rhodobacter capsulatus, D16428, type sp.<br />

Rhodobaca bogoriensis, AF248638, type sp.<br />

Roseinatronobacter thiooxidans, AF249749, type sp.<br />

Rhodobacter veldkampii, D16421<br />

Haematobacter massiliensis, AF452106<br />

Haematobacter missouriensis, DQ342315, type sp.<br />

Rhodobacter vinaykumarii, AM408117<br />

Rhodovulum adriaticum, D16418<br />

Rhodovulum robiginosum, Y15012<br />

Rhodovulum imhoffii, AM180953<br />

Rhodovulum iodosum, Y15011<br />

Rhodovulum marinum, AJ891122<br />

Rhodovulum euryhalinum, D16426<br />

Rhodovulum strictum, D16419<br />

Rhodovulum sulfidophilum, D16423, type sp.<br />

Rhodovulum visakhapatnamense, AM180707<br />

Rubrimonas cliftonensis, D85834, type sp.<br />

Thioclava pacifica, AY656719, type sp.<br />

Paracoccus alcaliphilus, AY014177<br />

Paracoccus aminovorans, D32240<br />

Paracoccus thiocyanatus, D32242<br />

Paracoccus yeei, AY014173<br />

Paracoccus denitrificans, Y16927, type sp.<br />

Paracoccus aminophilus, AY014176<br />

Paracoccus bengalensis, AJ864469<br />

Paracoccus versutus, AY014174<br />

Paracoccus pantotrophus, Y16933<br />

Paracoccus methylutens, AF250334<br />

Paracoccus kondratievae, AF250332<br />

Paracoccus sulfuroxidans, DQ512861<br />

Paracoccus alkenifer, Y13827<br />

Paracoccus solventivorans, AY014175<br />

Paracoccus kocurii, D32241<br />

Paracoccus koreensis, AB187584<br />

Paracoccus haeundaensis, AY189743<br />

Paracoccus marcusii, Y12703<br />

Paracoccus carotinifaciens, AB006899<br />

Paracoccus seriniphilus, AJ428275<br />

Paracoccus zeaxanthinifaciens, AF461158<br />

Paracoccus homiensis, DQ342239<br />

Methylarcula marina, AF030436, type sp.<br />

Methylarcula terricola, AF030437<br />

Rhodothalassium salexigens, D14431, type sp.<br />

Kordiimonas gwangyangensis, AY682384, Kordiimonadaceae, type sp.

---

Sneathiella chinensis, DQ219355, Sneathiellaceae, type sp.<br />

Rickettsiaceae (19:0)<br />

Rickettsia conorii, AF541999<br />

Rickettsia rickettsii, L36217<br />

Rickettsia parkeri, L36673<br />

Rickettsia honei, U17645<br />

Rickettsia sibirica, D38628<br />

Rickettsia heilongjiangensis, AF178037<br />

Rickettsia asiatica, AF394906<br />

Rickettsia massiliae, L36214<br />

Rickettsia prowazekii, M21789, type sp.<br />

Rickettsia typhi, U12463<br />

Rickettsia montanensis, L36215<br />

Rickettsia aeschlimannii, U74757<br />

Rickettsia rhipicephali, L36216<br />

Rickettsia tamurae, AY049981<br />

Rickettsia akari , L36099<br />

Rickettsia australis, L36101<br />

Rickettsia canadensis, L36104<br />

Rickettsia bellii, L36103<br />

Orientia tsutsugamushi, D38623, type sp.<br />

Ehrlichia chaffeensis, M73222, Anaplasmataceae<br />

Ehrlichia muris, U15527, Anaplasmataceae<br />

Ehrlichia ewingii, M73227, Anaplasmataceae<br />

Ehrlichia ruminantium, X61659, Anaplasmataceae<br />

Anaplasma phagocytophilum, U02521, Anaplasmataceae<br />

Neorickettsia risticii, M21290, Anaplasmataceae<br />

Neorickettsia sennetsu, M73225, Anaplasmataceae<br />

Rhodospirillaceae and Acetobacteraceae (113:0)<br />

Acetobacteraceae (74:0)<br />

Acetobacter malorum, AJ419844<br />

Acetobacter orleanensis, AB032350<br />

Acetobacter cerevisiae, AJ419843<br />

Acetobacter cibinongensis, AB052710<br />

Acetobacter orientalis, AB052706<br />

Acetobacter indonesiensis, AB032356<br />

Acetobacter senegalensis, AY883036<br />

Acetobacter tropicalis, AB032355<br />

Acetobacter oeni, AY829472<br />

Acetobacter (subgen. Acetobacter Beijerinck 1898) aceti, X74066, type sp.<br />

Acetobacter nitrogenifigens, AY669513<br />

Acetobacter estunensis, AJ419838<br />

Acetobacter ghanensis, EF030713<br />

Acetobacter lovaniensis, AB032351<br />

Acetobacter syzygii, AB052712<br />

Acetobacter pasteurianus subsp. pasteurianus, X71863<br />

Acetobacter pomorum, AJ419835<br />

Acetobacter peroxydans, AB032352<br />

Gluconobacter frateurii, X82290<br />

Gluconobacter thailandicus, AB128050<br />

Gluconobacter cerinus, AB178406<br />

Gluconobacter albidus, AB178392<br />

Gluconobacter oxydans, X73820, type sp.<br />

Saccharibacter floricola, AB110421, type sp.<br />

Asaia krungthepensis, AB102953<br />

Asaia siamensis, AB035416<br />

Asaia bogorensis, AB025928, type sp.<br />

Swaminathania salitolerans, AF459454, type sp.<br />

Kozakia baliensis, AB056321, type sp.<br />

Neoasaia chiangmaiensis, AB208549, type sp.<br />

Acidomonas methanolica, X77468, type sp.<br />

Gluconacetobacter liquefaciens, X75617, type sp.<br />

Gluconacetobacter sacchari, AF127407<br />

Gluconacetobacter diazotrophicus, X75618<br />

Gluconacetobacter azotocaptans, AF192761<br />

Gluconacetobacter johannae, AF111841<br />

Gluconacetobacter intermedius, Y14694<br />

Gluconacetobacter oboediens, AB205221<br />

Gluconacetobacter rhaeticus, AY180961<br />

Gluconacetobacter nataicola, AB166743<br />

Gluconacetobacter europaeus, Z21936<br />

Gluconacetobacter swingsii, AY180960<br />

Gluconacetobacter saccharivorans, AJ012466<br />

Gluconacetobacter xylinus, X75619<br />

Gluconacetobacter hansenii, X75620<br />

Gluconacetobacter kombuchae, AY688433<br />

Gluconacetobacter entanii, AJ251110<br />

Granulibacter bethesdensis, AY788950, type sp.<br />

Rhodopila globiformis, D86513, type sp.<br />

Acidicaldus organivorans, AY140238, type sp.<br />

Acidisphaera rubrifaciens, D86512, type sp.<br />

Acidiphilium angustum, D30772<br />

Acidiphilium rubrum, D30776<br />

Acidiphilium acidophilum, D86511<br />

Acidiphilium cryptum, D30773, type sp.<br />

Acidiphilium organovorum, D30775<br />

Acidiphilium multivorum, AB006711<br />

Acidocella aminolytica, D30771<br />

Acidocella facilis, D30774, type sp.<br />

Roseomonas gilardii subsp. rosea, AY220740<br />

Roseomonas gilardii subsp. gilardii, AY150045, type sp.<br />

Roseomonas mucosa, AF538712<br />

Muricoccus roseus, AJ488505, type sp.<br />

Rubritepida flocculans, AF465832, type sp.<br />

Roseococcus thiosulfatophilus, X72908, type sp.<br />

Rhodovarius lipocyclicus, AJ633644, type sp.<br />

Craurococcus roseus, D85828, type sp.<br />

Paracraurococcus ruber, D85827, type sp.<br />

Belnapia moabensis, AJ871428, type sp.

---

Roseomonas cervicalis, AY150047<br />

Teichococcus ludipueritiae, AJ488504, type sp.<br />

Roseomonas lacus, AJ786000<br />

Roseomonas terrae, EF363716<br />

Roseomonas aquatica, AM231587<br />

Azospirillum lipoferum, Z29619, type sp.<br />

Azospirillum melinis, DQ022958<br />

Azospirillum oryzae, AB185396<br />

Azospirillum doebereinerae, AJ238567<br />

Azospirillum zeae, DQ682470<br />

Azospirillum brasilense, AY324110<br />

Azospirillum canadense, DQ393891<br />

Azospirillum halopraeferens, X79731<br />

Rhodocista centenaria, D12701, type sp.<br />

Rhodocista pekingensis, AF523824<br />

Azospirillum irakense, Z29583<br />

Skermanella parooensis, X90760, type sp.<br />

Skermanella aerolata, DQ672568<br />

Stella humosa, AJ535710, Acetobacteraceae, type sp.<br />

Stella vacuolata, AJ535711, Acetobacteraceae<br />

Caedibacter caryophilus, X71837, Unclassified Thiotrichales<br />

Inquilinus limosus, AY043374, type sp.<br />

Defluviicoccus vanus, AF179678, type sp.<br />

Magnetospirillum gryphiswaldense, Y10109, type sp.<br />

Magnetospirillum magnetotacticum, Y10110<br />

Phaeospirillum fulvum, D14433, type sp.<br />

Tistrella mobilis, AB071665, type sp.<br />

Roseospira goensis, AM283537<br />

Roseospira marina, AJ298879<br />

Roseospira visakhapatnamensis, AM282560<br />

Roseospira navarrensis, AJ298880<br />

Rhodospira trueperi, X99671, type sp.<br />

Rhodospirillum photometricum, AJ222662<br />

Rhodospirillum rubrum, CP000230, type sp.<br />

Thalassospira xiamenensis, AY189753<br />

Thalassospira profundimaris, AY186195<br />

Thalassospira lucentensis, AF358664, type sp.<br />

Terasakiella pusilla, AB006768, Methylocystaceae, type sp.<br />

Insolitispirillum peregrinum subsp. peregrinum, EF612767, Unclassified Alphaproteobacteria, type s<br />

Insolitispirillum peregrinum subsp. integrum, EF612768, Unclassified Alphaproteobacteria<br />

Novispirillum itersonii subsp. nipponicum, AB074520, Unclassified Alphaproteobacteria<br />

Novispirillum itersonii subsp. itersonii, EF612765, Unclassified Alphaproteobacteria, type sp.<br />

Caenispirillum bisanense, EF100694, type sp.<br />

Roseospirillum parvum, AJ011919, Rhodobiaceae, type sp.<br />

Rhodovibrio salinarum, D14432, type sp.<br />

Deltaproteobacteria and Epsilonproteobacteria (277:0)<br />

Epsilonproteobacteria (79:0)<br />

Campylobacterales (72:0)<br />

Campylobacteraceae (36:0)<br />

Campylobacter helveticus, U03022<br />

Campylobacter upsaliensis, DQ174157<br />

Campylobacter canadensis, EF621894<br />

Campylobacter lari, AY621114<br />

Campylobacter jejuni subsp. jejuni, AF372091<br />

Campylobacter jejuni subsp. doylei, DQ174144<br />

Campylobacter insulaenigrae, DQ174183<br />

Campylobacter coli, AF372092<br />

Campylobacter hyointestinalis subsp. lawsonii, AF097685<br />

Campylobacter lanienae, AF043425<br />

Campylobacter hyointestinalis subsp. hyointestinalis, AF097689<br />

Campylobacter fetus subsp. venerealis, DQ174131<br />

Campylobacter fetus subsp. fetus, DQ174127, type sp.<br />

Campylobacter mucosalis, DQ174173<br />

Bacteroides ureolyticus, L04321, Bacteroidaceae<br />

Campylobacter hominis, AJ251584<br />

Campylobacter gracilis, DQ174168<br />

Campylobacter rectus, DQ174169<br />

Campylobacter showae, DQ174155<br />

Campylobacter sputorum subsp. bubulus, DQ174151<br />

Campylobacter sputorum subsp. sputorum, X67775<br />

Campylobacter curvus, DQ174165<br />

Campylobacter concisus, DQ174166<br />

Sulfurospirillum arsenophilum, U85964<br />

Sulfurospirillum halorespirans, AF218076<br />

Sulfurospirillum multivorans, X82931<br />

Sulfurospirillum barnesii, AF038843<br />

Sulfurospirillum deleyianum, Y13671, type sp.<br />

Sulfurospirillum cavolei, AB246781<br />

Sulfurospirillum arcachonense, Y11561<br />

Arcobacter cryaerophilus, L14624<br />

Arcobacter skirrowii, L14625<br />

Arcobacter cibarius, AJ607391<br />

Arcobacter butzleri, AY621116<br />

Arcobacter nitrofigilis, L14627, type sp.<br />

Arcobacter halophilus, AF513455<br />

Helicobacteraceae (30:0)<br />

Helicobacter bizzozeronii, Y09404<br />

Helicobacter cynogastricus, DQ004689<br />

Helicobacter salomonis, U89351<br />

Helicobacter felis, M57398<br />

Helicobacter acinonychis, M88148<br />

Helicobacter pylori, U01330, type sp.<br />

Helicobacter cetorum, AF292378<br />

Helicobacter brantae, DQ415546<br />

Helicobacter cholecystus, AY686606<br />

Helicobacter pametensis, M88147

---

Helicobacter anseris, DQ415545<br />

Helicobacter mustelae, M35048<br />

Helicobacter fennelliae, M88154<br />

Helicobacter trogontum, U65103<br />

Helicobacter marmotae, AF333341<br />

Helicobacter muridarum, M80205<br />

Helicobacter typhlonius, AF127912<br />

Helicobacter mastomyrinus, AY742307<br />

Helicobacter aurati, AF297868<br />

Helicobacter hepaticus, U07574<br />

Helicobacter bilis, U18766<br />

Helicobacter cinaedi, M88150<br />

Helicobacter canis, AY631945<br />

Helicobacter equorum, DQ307735<br />

Helicobacter pullorum, AY631956<br />

Helicobacter canadensis, AF262037<br />

Helicobacter ganmani, AF000221<br />

Helicobacter rodentium, U96296<br />

Helicobacter mesocricetorum, AF072471<br />

Wolinella succinogenes, M88159, type sp.<br />

Sulfurimonas autotrophica, AB088431, Helicobacteraceae, type sp.<br />

Sulfurimonas paralvinellae, AB252048, Helicobacteraceae<br />

Sulfurimonas denitrificans, CP000153, Helicobacteraceae<br />

Nitratifractor salsuginis, AB175500, Nautiliaceae, type sp.<br />

Sulfurovum lithotrophicum, AB091292, Helicobacteraceae, type sp.<br />

Hydrogenimonas thermophila, AB105048, Hydrogenimonaceae, type sp.<br />

Nitratiruptor tergarcus, AB175499, Nautiliaceae, type sp.<br />

Nautiliaceae (6:0)<br />

Caminibacter hydrogeniphilus, AJ309655, type sp.<br />

Caminibacter mediatlanticus, AY691430<br />

Caminibacter profundus, AJ535664<br />

Lebetimonas acidiphila, AB167820, type sp.<br />

Nautilia lithotrophica, AJ404370, type sp.<br />

Thioreductor micantisoli, AB175498, type sp.<br />

Desulfurellaceae (5:0)<br />

Desulfurella acetivorans, X72768, type sp.<br />

Desulfurella multipotens, Y16943<br />

Desulfurella propionica, Y16942<br />

Desulfurella kamchatkensis, Y16941<br />

Hippea maritima, Y18292, type sp.<br />

Desulfovibrionales (60:0)<br />

Desulfovibrionaceae (43:0)<br />

Desulfovibrio ferrireducens, DQ148944<br />

Desulfovibrio frigidus, DQ148943<br />

Desulfovibrio hydrothermalis, AF458778<br />

Desulfovibrio zosterae, Y18049<br />

Desulfovibrio bastinii, AY359868<br />

Desulfovibrio aespoeensis, X95230<br />

Desulfovibrio dechloracetivorans, AF230530<br />

Desulfovibrio halophilus, U48243<br />

Desulfovibrio oxyclinae, U33316<br />

Desulfovibrio gracilis, U53464<br />

Desulfovibrio longus, AY359867<br />

Desulfovibrio aminophilus, AF067964<br />

Desulfovibrio mexicanus, AF227984<br />

Desulfovibrio africanus, X99236<br />

Desulfovibrio alkalitolerans, AY649785<br />

Desulfovibrio bizertensis, DQ422859<br />

Desulfovibrio senezii, AF050100<br />

Desulfovibrio carbinolicus, AY626035<br />

Desulfovibrio magneticus, D43944<br />

Desulfovibrio burkinensis, AF053752<br />

Desulfovibrio alcoholivorans, AF053751<br />

Desulfovibrio fructosivorans, AF050101<br />

Desulfovibrio sulfodismutans, Y17764<br />

Desulfovibrio putealis, AY574979<br />

Desulfovibrio inopinatus, AF177276<br />

Desulfovibrio indonesiensis, Y09504<br />

Desulfovibrio marinus, DQ365924<br />

Desulfovibrio gabonensis, U31080<br />

Desulfovibrio gigas, DQ447183<br />

Desulfovibrio desulfuricans subsp. desulfuricans, M34113, type sp.<br />

Desulfovibrio intestinalis, Y12254<br />

Desulfovibrio piger, AF192152<br />

Bilophila wadsworthia, AJ867049, type sp.<br />

Lawsonia intracellularis, L15739<br />

Desulfovibrio oxamicus, DQ122124<br />

Desulfovibrio termitidis, X87409<br />

Desulfovibrio longreachensis, Z24450<br />

Desulfovibrio vulgaris, AF418179<br />

Desulfovibrio cuneatus, X99501<br />

Desulfovibrio litoralis, X99504<br />

Desulfovibrio alaskensis, Y11984<br />

Desulfovibrio vietnamensis, X93994<br />

Desulfovibrio acrylicus, U32578<br />

Desulfonatronaceae (3:0)<br />

Desulfonatronum lacustre, AF418171, type sp.<br />

Desulfonatronum thiodismutans, AF373920<br />

Desulfonatronum cooperativum, AY725424<br />

Desulfomicrobiaceae (7:0)<br />

Desulfomicrobium apsheronum, U64865<br />

Desulfomicrobium escambiense, AJ277886<br />

Desulfomicrobium norvegicum, AJ277897<br />

Desulfomicrobium macestii, AJ237604

---

Desulfomicrobium macestii, AJ237604<br />

Desulfomicrobium baculatum, AJ277894, type sp.<br />

Desulfomicrobium orale, AJ251623<br />

Desulfomicrobium thermophilum, AY464939<br />

Desulfonatronovibrio hydrogenovorans, X99234, Desulfohalobiaceae, type sp.<br />

Desulfohalobiaceae (6:0)<br />

Desulfothermus naphthae, X80922, type sp.<br />

Desulfothermus okinawensis, AB264617<br />

Desulfonauticus submarinus, AF524933, type sp.<br />

Desulfovermiculus halophilus, DQ139408, type sp.<br />

Desulfohalobium utahense, DQ067421<br />

Desulfohalobium retbaense, X99235, type sp.<br />

Desulfobacteraceae (32:0)<br />

Desulfobacter curvatus, AF418175<br />

Desulfobacter postgatei, AF418180, type sp.<br />

Desulfobacter halotolerans, Y14745<br />

Desulfobacter latus, AJ441315<br />

Desulfobacter vibrioformis, U12254<br />

Desulfospira joergensenii, X99637, type sp.<br />

Desulfotignum balticum, AF418176, type sp.<br />

Desulfotignum toluenicum, EF207157<br />

Desulfotignum phosphitoxidans, AF420288<br />

Desulfobacula phenolica, AJ237606<br />

Desulfobacula toluolica, AJ441316, type sp.<br />

Desulfobacterium autotrophicum, AF418177<br />

Desulfobacterium vacuolatum, AF418178<br />

Desulfocella halophila, AF022936, type sp.<br />

Desulforegula conservatrix, AF243334, type sp.<br />

Desulfatiferula olefinivorans, DQ826724, type sp.<br />

Desulfofaba gelida, AF099063, type sp.<br />

Desulfofaba hansenii, AF321820<br />

Desulfofrigus fragile, AF099065<br />

Desulfofrigus oceanense, AF099064, type sp.<br />

Desulfofaba fastidiosa, AY268891<br />

Desulfococcus biacutus, AJ277887<br />

Desulfococcus multivorans, AF418173, type sp.<br />

Desulfonema limicola, U45990, type sp.<br />

Desulfonema magnum, U45989<br />

Desulfonema ishimotonii, U45992<br />

Desulfosarcina ovata, Y17286<br />

Desulfosarcina variabilis, M34407, type sp.<br />

Desulfosarcina cetonica, AJ237603<br />

Desulfobacterium indolicum, AJ237607, type sp.<br />

Desulfatibacillum aliphaticivorans, AY184360, type sp.<br />

Desulfatibacillum alkenivorans, AY493562<br />

Syntrophaceae (3:0)<br />

Syntrophus buswellii, X85131, type sp.<br />

Syntrophus gentianae, X85132<br />

Smithella propionica, AF126282, type sp.<br />

Syntrophobacteraceae (10:0)<br />

Syntrophobacter fumaroxidans, X82874<br />

Syntrophobacter pfennigii, X82875<br />

Desulforhabdus amnigena, X83274, type sp.<br />

Desulfovirga adipica, AJ237605, type sp.<br />

Syntrophobacter wolinii, X70905, type sp.<br />

Syntrophobacter sulfatireducens, AY651787<br />

Desulfacinum hydrothermale, AF170417<br />

Desulfacinum infernum, L27426, type sp.<br />

Desulfoglaeba alkanexedens, DQ303457, type sp.<br />

<strong>The</strong>rmodesulforhabdus norvegica, U25627, type sp.<br />

Desulfobacca acetoxidans, AF002671, Syntrophaceae, type sp.<br />

Desulfarculus baarsii, AF418174, Desulfarculaceae, type sp.<br />

Desulfobacterium anilini, AJ237601, Desulfobacteraceae<br />

Desulfomonile limimaris, AF230531, Syntrophaceae<br />

Desulfomonile tiedjei, AM086646, Syntrophaceae, type sp.<br />

Desulfobulbaceae (14:0)<br />

Desulfotalea arctica, AF099061<br />

Desulfotalea psychrophila, AF099062, type sp.<br />

Desulfopila aestuarii, AB110542, type sp.<br />

Desulfobacterium catecholicum, AJ237602, Desulfobacteraceae<br />

Desulforhopalus singaporensis, AF118453<br />

Desulfofustis glycolicus, X99707, type sp.<br />

Desulforhopalus vacuolatus, L42613, type sp.<br />

Desulfocapsa sulfexigens, Y13672<br />

Desulfocapsa thiozymogenes, X95181, type sp.<br />

Desulfobulbus elongatus, X95180<br />

Desulfobulbus propionicus, AY548789, type sp.<br />

Desulfobulbus rhabdoformis, U12253<br />

Desulfobulbus japonicus, AB110549<br />

Desulfobulbus mediterraneus, AF354663<br />

Bacteriovoracaceae (4:0)<br />

Bacteriovorax litoralis, AF084859<br />

Bacteriovorax marinus, AF084854<br />

Bacteriovorax stolpii, AJ288899, type sp.<br />

Peredibacter starrii, AF084852, type sp.<br />

Bdellovibrio bacteriovorus, AJ292759, Bdellovibrionaceae, type sp.<br />

Myxococcales (32:0)<br />

Cystobacteraceae and Myxococcaceae (23:0)<br />

Cystobacter badius, DQ768108<br />

Cystobacter fuscus, DQ768109, type sp.<br />

Cystobacter velatus, DQ768115<br />

Cystobacter ferrugineus, AJ233901<br />

Cystobacter armeniaca, DQ768107

---

Cystobacter armeniaca, DQ768107<br />

Cystobacter miniatus, DQ768111<br />

Archangium gephyra, DQ768106, type sp.<br />

Cystobacter violaceus, DQ768114<br />

Cystobacter minus, AJ233903<br />

Myxococcaceae (9:0)<br />

Myxococcus flavescens, DQ768130<br />

Myxococcus virescens, DQ768119<br />

Myxococcus xanthus, DQ768116<br />

Corallococcus macrosporus, AJ811623<br />

Myxococcus fulvus, DQ768117, type sp.<br />

Pyxidicoccus fallax, DQ768123, type sp.<br />

Corallococcus coralloides, AJ811588, type sp.<br />

Melittangium lichenicola, DQ768126, Cystobacteraceae<br />

Corallococcus exiguus, AJ811598<br />

Hyalangium minutum, DQ768124, type sp.<br />

Stigmatella aurantiaca, DQ768127, type sp.<br />

Stigmatella hybrida, DQ768129<br />

Stigmatella erecta, AJ970180<br />

Anaeromyxobacter dehalogenans, AF382396, type sp.<br />

Nannocystaceae (3:0)<br />

Enhygromyxa salina, AB097590, type sp.<br />

Plesiocystis pacifica, AB083432, type sp.<br />

Nannocystis exedens, AB084253, type sp.<br />

Haliangiaceae (2:0)<br />

Haliangium ochraceum, AB016470, type sp.<br />

Haliangium tepidum, AB062751<br />

Chondromyces lanuginosus, AJ233939, Polyangiaceae<br />

Chondromyces robustus, AJ233942, Polyangiaceae<br />

Chondromyces apiculatus, AJ233938, Polyangiaceae<br />

Byssovorax cruenta, AJ833647, Polyangiaceae, type sp.<br />

Desulfuromonadales (32:0)<br />

Desulfuromonadaceae (19:0)<br />

Desulfuromonas svalbardensis, AY835388<br />

Desulfuromonas acetoxidans, AAEW02000008, type sp.<br />

Desulfuromonas thiophila, Y11560<br />

Desulfuromonas acetexigens, U23140<br />

Desulfuromonas chloroethenica, U49748<br />

Pelobacter acetylenicus, X70955<br />

Pelobacter venetianus, U41562<br />

Pelobacter carbinolicus , CP000142<br />

Geoalkalibacter ferrihydriticus, DQ309326, Geobacteraceae, type sp.<br />

Desulfuromonas palmitatis, U28172<br />

Desulfuromusa bakii, X79412<br />

Desulfuromusa kysingii, X79414, type sp.<br />

Desulfuromusa succinoxidans, X79415<br />

Desulfuromusa ferrireducens, AY835392<br />

Geopsychrobacter electrodiphilus, AY187303, Geobacteraceae, type sp.<br />

Pelobacter seleniigenes, DQ991964<br />

Malonomonas rubra, Y17712, type sp.<br />

Pelobacter acidigallici, X77216, type sp.<br />

Geothermobacter ehrlichii, AY155599, Geobacteraceae, type sp.<br />

Geobacteraceae (13:0)<br />

Geobacter chapellei, U41561<br />

Pelobacter propionicus , CP000482, Desulfuromonadaceae<br />

Geobacter psychrophilus, AY653549<br />

Geobacter thiogenes, AF223382<br />

Geobacter argillaceus, DQ145534<br />

Geobacter pelophilus, U96918<br />

Geobacter bemidjiensis, AY187307<br />

Geobacter bremensis, U96917<br />

Geobacter hydrogenophilus, U28173<br />

Geobacter metallireducens, L07834, type sp.<br />

Geobacter grbiciae, AF335183<br />

Geobacter sulfurreducens, U13928<br />

Geobacter pickeringii, DQ145535<br />

Bacteroidetes (469:0)<br />

Flavobacteriaceae (213:0)<br />

Muricauda aquimarina, AY445075<br />

Muricauda ruestringensis, AF218782, type sp.<br />

Muricauda flavescens, AY445073<br />

Flagellimonas eckloniae, DQ191180, type sp.<br />

Costertonia aggregata, DQ167246, type sp.<br />

Zobellia amurskyensis, AB121974<br />

Zobellia laminariae, AB121975<br />

Zobellia russellii, AB121976<br />

Zobellia galactanivorans, AF208293, type sp.<br />

Zobellia uliginosa, M62799<br />

Maribacter orientalis, AY271624<br />

Maribacter dokdonensis, AY960749<br />

Maribacter sedimenticola, AY271623, type sp.<br />

Maribacter ulvicola, AY271626<br />

Maribacter aquivivus, AY271625<br />

Pibocella ponti, AY576654, type sp.<br />

Maribacter polysiphoniae, AM497875<br />

Zeaxanthinibacter enoshimensis, AB264057, type sp.<br />

Robiginitalea biformata , AAOI01000001, type sp.<br />

Arenibacter palladensis, AJ575643<br />

Arenibacter troitsensis, AB080771<br />

Arenibacter echinorum, EF536748<br />

Arenibacter certesii, AY271622

---

Arenibacter latericius, AF052742, type sp.<br />

Cellulophaga algicola, AF001366<br />

Cellulophaga baltica, AJ005972<br />

Cellulophaga pacifica, AB100840<br />

Sediminicola luteus, AB206957, type sp.<br />

Cellulophaga fucicola, AJ005973<br />

Aequorivita crocea, AY027806<br />

Aequorivita lipolytica, AY027805<br />

Aequorivita antarctica, AY027802, type sp.<br />

Aequorivita sublithincola, AF170749<br />

Vitellibacter vladivostokensis, AB071382, type sp.<br />

Croceibacter atlanticus , AY163576, type sp.<br />

Marixanthomonas ophiurae, AB261012, type sp.<br />

Ulvibacter antarcticus, EF554364<br />

Ulvibacter litoralis, AY243096, type sp.<br />

Gelidibacter algens, U62914, type sp.<br />

Gelidibacter gilvus, AF001369<br />

Gelidibacter mesophilus, AJ344133<br />

Gelidibacter salicanalis, AY694009<br />

Subsaxibacter broadyi, AY693999, type sp.<br />

Sediminibacter furfurosus, AB255369, type sp.<br />

Subsaximicrobium saxinquilinus, AY693998<br />

Subsaximicrobium wynnwilliamsii, AY693997, type sp.<br />

Psychroserpens mesophilus, DQ001321<br />

Winogradskyella epiphytica, AY521224<br />

Winogradskyella thalassocola, AY521223, type sp.<br />

Winogradskyella eximia, AY521225<br />

Winogradskyella poriferorum, AY848823<br />

Psychroserpens burtonensis, U62913, type sp.<br />

Bizionia algoritergicola, AY694003<br />

Bizionia myxarmorum, AY694002<br />

Bizionia gelidisalsuginis, AY694004<br />

Bizionia saleffrena, AY694005<br />

Bizionia paragorgiae, AY651070, type sp.<br />

Formosa agariphila, AY187688<br />

Formosa algae, AY228461, type sp.<br />

Lacinutrix copepodicola, AY694001<br />

Tamlana crocina, AM286230, type sp.<br />

Yeosuana aromativorans, AY682382, type sp.<br />

Gaetbulibacter saemankumensis, AY883937, type sp.<br />

Mariniflexile gromovii, DQ312294, type sp.<br />

Flaviramulus basaltis, DQ361033, type sp.<br />

Algibacter lectus, AY187689, type sp.<br />

Algibacter mikhailovii, AM491809<br />

Gilvibacter sediminis, AB255368, type sp.<br />

Aquimarina latercula, M58769<br />

Kordia algicida, AY195836, type sp.<br />

Aquimarina muelleri, AY608406, type sp.<br />

Aquimarina intermedia, AM113977<br />

Aquimarina brevivitae, AY987367<br />

Dokdonia donghaensis, DQ003276, type sp.<br />

Krokinobacter genikus, AB198086, type sp.<br />

Krokinobacter diaphorus, AB198089<br />

Krokinobacter eikastus, AB198088<br />

Salegentibacter agarivorans, DQ191176<br />

Salegentibacter holothuriorum, AB116148<br />

Salegentibacter salegens, M92279, type sp.<br />

Salegentibacter salarius, EF486353<br />

Salegentibacter mishustinae, AY576653<br />

Salegentibacter flavus, AY682200<br />

Gramella echinicola, AY608409, type sp.<br />

Gramella portivictoriae, DQ002871<br />

Psychroflexus torquis, U85881, type sp.<br />

Psychroflexus tropicus, AF513434<br />

Zunongwangia profunda, DQ855467, type sp.<br />

Mesonia algae, AF536383, type sp.<br />

Mesonia mobilis, DQ367409<br />

Gillisia illustrilutea, AY694008<br />

Gillisia sandarakina, AY694007<br />

Gillisia hiemivivida, AY694006<br />

Gillisia limnaea, AJ440991, type sp.<br />

Gillisia myxillae, DQ202393<br />

Gillisia mitskevichiae, AY576655<br />

Salegentibacter catena, DQ640642<br />

Leeuwenhoekiella aequorea, AJ278780<br />

Leeuwenhoekiella marinoflava, AF203475, type sp.<br />

Leeuwenhoekiella blandensis, DQ294291<br />

Nonlabens tegetincola, AY987349, type sp.<br />

Sandarakinotalea sediminis, AB206954, type sp.<br />

Donghaeana dokdonensis, DQ017065, type sp.<br />

Stenothermobacter spongiae, DQ064789, type sp.<br />

Capnocytophaga ochracea, U41350, type sp.<br />

Capnocytophaga sputigena, X67609<br />

Capnocytophaga haemolytica, X97247<br />

Capnocytophaga canimorsus, AY643075<br />

Capnocytophaga cynodegmi, AY643076<br />

Capnocytophaga gingivalis, X67608<br />

Capnocytophaga granulosa, U41347<br />

Coenonia anatina, Y17612, type sp.<br />

Zhouia amylolytica, DQ423479, type sp.<br />

Galbibacter mesophilus, AB255367, type sp.<br />

Flavobacterium johnsoniae, AM230489<br />

Flexibacter aurantiacus, M62792, Cytophagaceae<br />

Flavobacterium defluvii, DQ372986<br />

Flavobacterium daejeonense, DQ222427<br />

Flavobacterium soli, DQ178976<br />

Flavobacterium denitrificans, AJ318907<br />

Flavobacterium hercynium, AM265623<br />

Flavobacterium saccharophilum, AM230491<br />

Flavobacterium segetis, AY581115<br />

Flavobacterium weaverense, AY581114<br />

Flavobacterium frigidimaris, AB183888

---

Flavobacterium micromati, AJ557888<br />

Flavobacterium aquidurense, AM177392<br />

Flavobacterium hydatis, M58764<br />

Flavobacterium hibernum, L39067<br />

Flavobacterium degerlachei, AJ557886<br />

Flavobacterium gillisiae, U85889<br />

Flavobacterium frigoris, AJ557887<br />

Flavobacterium gelidilacus, AJ440996<br />

Flavobacterium xinjiangense, AF433173<br />

Flavobacterium frigidarium, AF162266<br />

Flavobacterium omnivorum, AF433174<br />

Flavobacterium fryxellicola, AJ811961<br />

Flavobacterium xanthum, AF030380<br />

Flavobacterium limicola, AB075230<br />

Flavobacterium psychrolimnae, AJ585428<br />

Flavobacterium psychrophilum, AB078060<br />

Flavobacterium granuli, AB180738<br />

Flavobacterium succinicans, AM230492<br />

Flavobacterium glaciei, DQ515962<br />

Flavobacterium antarcticum, AY581113<br />

Flavobacterium tegetincola, U85887<br />

Flavobacterium aquatile, AM230485, type sp.<br />

Flavobacterium terrigena, DQ889724<br />

Flavobacterium cucumis, EF126993<br />

Flavobacterium indicum, AY904351<br />

Flavobacterium croceum, DQ372982<br />

Flavobacterium columnare, AB078047<br />

Flavobacterium terrae, EF117329<br />

Flavobacterium saliperosum, DQ021903<br />

Flavobacterium suncheonense, DQ222428<br />

Flavobacterium filum, DQ372981<br />

Flavobacterium ceti, AM292800<br />

Myroides odoratus, M58777, type sp.<br />

Myroides pelagicus, AB176662<br />

Myroides odoratimimus, AJ854059<br />

Tenacibaculum litoreum, AY962294<br />

Tenacibaculum lutimaris, AY661691<br />

Tenacibaculum mesophilum, AB032501<br />

Tenacibaculum aestuarii, DQ314760<br />

Tenacibaculum amylolyticum, AB032505<br />

Tenacibaculum skagerrakense, AF469612<br />

Tenacibaculum litopenaei, DQ822567<br />

Tenacibaculum ovolyticum, AB078058<br />

Polaribacter butkevichii, AY189722<br />

Polaribacter irgensii, M61002<br />

Polaribacter filamentus, U73726, type sp.<br />

Polaribacter franzmannii, U14586<br />

Polaribacter dokdonensis, DQ004686<br />

Tenacibaculum maritimum, AB078057, type sp.<br />

Lutimonas vermicola, EF108218, type sp.<br />

Lutibacter litoralis, AY962293, type sp.<br />

Chryseobacterium daecheongense, AJ457206<br />

Chryseobacterium defluvii, AJ309324<br />

Chryseobacterium wanjuense, DQ256729<br />

Chryseobacterium taeanense, AY883416<br />

Chryseobacterium taichungense, AJ843132<br />

Chryseobacterium taiwanense, DQ318789<br />

Chryseobacterium daeguense, EF076759<br />

Chryseobacterium balustinum, AY468447<br />

Chryseobacterium piscium, AM040439<br />

Chryseobacterium scophthalmum, AJ271009<br />

Chryseobacterium indoltheticum, AY468448<br />

Chryseobacterium formosense, AY315443<br />

Chryseobacterium soldanellicola, AY883415<br />

Sejongia marina, EF554366<br />

Chryseobacterium luteum, AM489609<br />

Chryseobacterium shigense, AB193101<br />

Chryseobacterium vrystaatense, AJ871397<br />

Chryseobacterium joostei, AJ271010<br />

Chryseobacterium flavum, EF154516<br />

Chryseobacterium gleum, AM232812, type sp.<br />

Chryseobacterium indologenes, AM232813<br />

Chryseobacterium caeni, DQ336714<br />

Chryseobacterium haifense, EF204450<br />

Kaistella koreensis, AF344179, type sp.<br />

Sejongia antarctica, AY553293, type sp.<br />

Sejongia jeonii, AY553294<br />

Chryseobacterium hispanicum, AM159183<br />

Chryseobacterium hominis, AM261868<br />

Riemerella anatipestifer, U60101, type sp.<br />

Riemerella columbina, AF181448<br />

Cloacibacterium normanense, AJ575430, type sp.<br />

Epilithonimonas tenax, AF493696, type sp.<br />

Elizabethkingia meningoseptica, AJ704540, type sp.<br />

Elizabethkingia miricola, AB071953<br />

Empedobacter brevis, AM177497, type sp.<br />

Wautersiella falsenii, AM084341, type sp.<br />

Ornithobacterium rhinotracheale, U87101, type sp.<br />

Brumimicrobium glaciale, AF521195, Cryomorphaceae, type sp.<br />

Lishizhenia caseinilytica, AB176674, Cryomorphaceae, type sp.<br />

Fluviicola taffensis, AF493694, Cryomorphaceae, type sp.<br />

Crocinitomix catalasitica, AB078042, Cryomorphaceae, type sp.<br />

Bacteroidales (102:0)<br />

Bacteroidaceae and Prevotellaceae (68:0)<br />

Prevotellaceae (38:0)<br />

Prevotella loescheii, AY836508<br />

Prevotella shahii, AB108825<br />

Prevotella marshii, AF481227<br />

Prevotella oralis, AY323522

---

Prevotella oralis, AY323522<br />

Prevotella buccalis, L16476<br />

Prevotella timonensis, DQ518919<br />

Prevotella stercorea, AB244774<br />

Prevotella nanceiensis, AY957555<br />

Prevotella enoeca, AJ005635<br />

Prevotella pleuritidis, AB278593<br />

Xylanibacter oryzae, AB078826, type sp.<br />

Prevotella intermedia, X73965<br />

Prevotella pallens, Y13105<br />

Prevotella nigrescens, X73963<br />

Prevotella disiens, L16483<br />

Prevotella corporis, L16465<br />

Prevotella bivia, L16475<br />

Prevotella paludivivens, AB078827<br />

Prevotella denticola, AY323524<br />

Prevotella multiformis, AB182483<br />

Prevotella melaninogenica, AY323525, type sp.<br />

Prevotella veroralis, L16473<br />

Prevotella albensis, AJ011683<br />

Prevotella baroniae, AY840553<br />

Prevotella buccae, L16477<br />

Prevotella maculosa, EF534314<br />

Prevotella oris, L16474<br />

Prevotella salivae, AB108826<br />

Hallella seregens, X81877, type sp.<br />

Prevotella dentalis, X81876<br />

Prevotella bergensis, AY350613<br />

Prevotella multisaccharivorax, AB200414<br />

Prevotella oulorum, L16472<br />

Prevotella copri, AB064923<br />

Prevotella brevis, AJ011682<br />

Prevotella ruminicola, L16482<br />

Prevotella bryantii, AJ006457<br />

Prevotella tannerae, AJ005634<br />

Bacteroides coprophilus, AB260026<br />

Bacteroides salanitronis, AB253731<br />

Bacteroides barnesiae, AB253726<br />

Bacteroides coprocola, AB200224<br />

Bacteroides plebeius, AB200217<br />

Bacteroides dorei, AB242142<br />

Bacteroides vulgatus, AJ867050<br />

Bacteroides massiliensis, AY126616<br />

Bacteroides helcogenes, AB200227<br />

Prevotella heparinolytica, L16487, Prevotellaceae<br />

Prevotella zoogleoformans, L16488, Prevotellaceae<br />

Bacteroides uniformis, AB050110<br />

Bacteroides gallinarum, AB253732<br />

Bacteroides stercoris, X83953<br />

Bacteroides eggerthii, AB050107<br />

Bacteroides fragilis , CR626927, type sp.<br />

Weeksella virosa, AF133539, Flavobacteriaceae, type sp.<br />

Bacteroides nordii, AY608697<br />

Bacteroides salyersiae, AY608696<br />

Bacteroides thetaiotaomicron , AE015928<br />

Bacteroides pyogenes, AB200229<br />

Bacteroides suis, DQ497991<br />

Bacteroides tectus, AB200228<br />

Bacteroides finegoldii, AB222699<br />

Bacteroides acidifaciens, AB021164<br />

Bacteroides caccae, X83951<br />

Bacteroides ovatus, AB050108<br />

Bacteroides intestinalis, AB214328<br />

Bacteroides cellulosilyticus, AJ583243<br />

Bacteroides coprosuis, AF319778<br />

Porphyromonadaceae (24:0)<br />

Porphyromonas asaccharolytica, L16490, type sp.<br />

Porphyromonas uenonis, AY570514<br />

Porphyromonas circumdentaria, L26102<br />

Porphyromonas endodontalis, AY253728<br />

Porphyromonas macacae, L16494<br />

Porphyromonas levii, L16493<br />

Porphyromonas somerae, AY968205<br />

Porphyromonas cangingivalis, X76259<br />

Porphyromonas gingivalis, AB035459<br />

Porphyromonas gulae, AF208290<br />

Porphyromonas cansulci, X76260<br />

Porphyromonas catoniae, X82823<br />

Tannerella forsythensis, AB035460, type sp.<br />

Parabacteroides johnsonii, AB261128<br />

Parabacteroides merdae, AB238928<br />

Parabacteroides distasonis, AB238922, type sp.<br />

Parabacteroides goldsteinii, AY974070<br />

Barnesiella viscericola, AB267809, type sp.<br />

Dysgonomonas gadei, Y18530, type sp.<br />

Dysgonomonas mossii, AJ319867<br />

Dysgonomonas capnocytophagoides, U41355<br />

Paludibacter propionicigenes, AB078842, type sp.<br />

Petrimonas sulfuriphila, AY570690, type sp.<br />

Proteiniphilum acetatigenes, AY742226, type sp.<br />

Bacteroides splanchnicus, L16496, Bacteroidaceae<br />

Anaerophaga thermohalophila, AJ418048, Marinilabiaceae, type sp.<br />

Alkaliflexus imshenetskii, AJ784993, Marinilabiaceae, type sp.<br />

Cytophaga fermentans, M58766, Cytophagaceae<br />

Rikenellaceae (5:0)<br />

Alistipes finegoldii, AY643083<br />

Alistipes shahii, AY974072<br />

Alistipes putredinis, L16497, type sp.<br />

Alistipes onderdonkii, AY974071

---

Rikenella microfusus, L16498, type sp.<br />

Prolixibacter bellariivorans, AY918928, Unclassified Bacteroidetes, type sp.<br />

Cryomorphaceae (2:0)<br />

Cryomorpha ignava, AF170738, type sp.<br />

Owenweeksia hongkongensis, AB125062, type sp.<br />

Sphingobacteriaceae (35:0)<br />

Pedobacter cryoconitis, AJ438170<br />

Pedobacter himalayensis, AJ583425<br />

Pedobacter hartonius, AM491371<br />

Pedobacter westerhofensis, AM491369<br />

Pedobacter piscium, AJ438174<br />

Pedobacter insulae, EF100697<br />

Pedobacter koreensis, DQ092871<br />

Pedobacter ginsengisoli, AB245371<br />

Pedobacter africanus, AJ438171<br />

Pedobacter heparinus, AJ438172, type sp.<br />

Pedobacter metabolipauper, AM491370<br />

Pedobacter caeni, AJ786798<br />

Pedobacter steynii, AM491372<br />

Pedobacter duraquae, AM491368<br />

Pedobacter panaciterrae, AB245368<br />

Pedobacter aquatilis, AM114396<br />

Pedobacter sandarakinus, DQ235228<br />

Pedobacter suwonensis, DQ097274<br />

Pedobacter terrae, DQ889723<br />

Pedobacter roseus, DQ112353<br />

Mucilaginibacter gracilis, AM490403<br />

Mucilaginibacter paludis, AM490402, type sp.<br />

Pedobacter lentus, EF446146<br />

Pedobacter terricola, EF446147<br />

Sphingobacterium multivorum, AB100738<br />

Sphingobacterium thalpophilum, AJ438177<br />

Sphingobacterium faecium, AJ438176<br />

Sphingobacterium spiritivorum, EF090267, type sp.<br />

Sphingobacterium composti, AB244764<br />

Flavobacterium mizutaii, AJ438175, Flavobacteriaceae<br />

Sphingobacterium daejeonense, AB249372<br />

Olivibacter sitiensis, DQ421387, type sp.<br />

Parapedobacter koreensis, DQ680836, type sp.<br />

Pseudosphingobacterium domesticum, AM407725, type sp.<br />

Pedobacter saltans, AJ438173<br />

Flexibacter canadensis, AB078046, Cytophagaceae<br />

Chitinophagaceae (17:0)<br />

Chitinophaga filiformis, AB078049<br />

Chitinophaga ginsengisoli, AB245374<br />

Chitinophaga pinensis, AF078775, type sp.<br />

Chitinophaga skermanii, DQ062743<br />

Chitinophaga sancti, AB078066<br />

Chitinophaga arvensicola, AM237311<br />

Chitinophaga ginsengisegetis, AB264798<br />

Chitinophaga terrae, AB278570<br />

Chitinophaga japonensis, AB078055<br />

Niabella aurantiaca, DQ457019, Unclassified Sphingobacteriales, type sp<br />

Terrimonas ferruginea, AM230484, type sp.<br />

Terrimonas lutea, AB192292<br />

Flavisolibacter ginsengiterrae, AB267476, Unclassified Bacteroidetes, type s<br />

Flavisolibacter ginsengisoli, AB267477, Unclassified Bacteroidetes<br />

Niastella koreensis, DQ244077, type sp.<br />

Niastella yeongjuensis, DQ244076<br />

Segetibacter koreensis, AB267478, Unclassified Bacteroidetes, type sp.<br />

Lewinella lutea, AB301494, Saprospiraceae<br />

Lewinella marina, AB301495, Saprospiraceae<br />

Lewinella agarilytica, AM286229, Saprospiraceae<br />

Lewinella persica, AF039295, Saprospiraceae<br />

Lewinella cohaerens, AF039292, Saprospiraceae, type sp.<br />

Lewinella nigricans, AF039294, Saprospiraceae<br />

Haliscomenobacter hydrossis, AJ784892, Saprospiraceae, type sp.<br />

Aureispira marina, AB245933, Saprospiraceae, type sp.<br />

Aureispira maritima, AB278130, Saprospiraceae<br />

Cytophagaceae and Cyclobacteriaceae (71:0)<br />

Cyclobacteriaceae (23:0)<br />

Algoriphagus chordae, AJ575265<br />

Algoriphagus locisalis, AY835922<br />

Algoriphagus yeomjeoni, AY699794<br />

Algoriphagus winogradskyi, AJ575263<br />

Algoriphagus aquimarinus, AJ575264<br />

Algoriphagus ratkowskyi, AJ608641, type sp.<br />

Algoriphagus antarcticus, AJ577141<br />

Algoriphagus halophilus, AY264839<br />

Algoriphagus alkaliphilus, AJ717393<br />

Algoriphagus terrigena, DQ178979<br />

Algoriphagus boritolerans, AB197852<br />

Algoriphagus mannitolivorans, AY264838<br />

Algoriphagus marincola, AY533663<br />

Algoriphagus ornithinivorans, AY264840<br />

Algoriphagus vanfongensis, EF392675<br />

Cyclobacterium amurskyense, AY960985<br />

Cyclobacterium marinum, AY533665, type sp.<br />

Cyclobacterium lianum, DQ534063<br />

Echinicola pacifica, DQ185611, type sp.<br />

Echinicola vietnamensis, DQ645421<br />

Belliella baltica, AJ564643, type sp.<br />

Rhodonellum psychrophilum, DQ112660, Cytophagaceae, type sp.<br />

Aquiflexum balticum, AJ744861, type sp.<br />

Roseivirga echinicomitans, AY753206, Flammeovirgaceae

---

Roseivirga ehrenbergii, AY608410, Flammeovirgaceae, type sp.<br />

Roseivirga seohaensis, AY739663, Flammeovirgaceae<br />

Fabibacter halotolerans, DQ080995, Flammeovirgaceae, type sp.<br />

Roseivirga spongicola, DQ080996, Flammeovirgaceae<br />

Fulvivirga kasyanovii, DQ836305, Unclassified Bacteroidetes, type sp.<br />

Reichenbachiella agariperforans, AB058919, Flammeovirgaceae, type sp.<br />

Flexibacter tractuosus, AB078072<br />

Cytophaga aurantiaca, D12658<br />

Cytophaga hutchinsonii , CP000383, type sp.<br />

Sporocytophaga myxococcoides, AJ310654, type sp.<br />

Dyadobacter koreensis, EF017660<br />

Persicitalea jodogahamensis, AB272165, type sp.<br />

Dyadobacter hamtensis, AJ619978<br />

Dyadobacter crusticola, AJ821885<br />

Dyadobacter ginsengisoli, AB245369<br />

Dyadobacter fermentans, AF137029, type sp.<br />

Dyadobacter beijingensis, DQ335125<br />

Runella defluvii, DQ372980<br />

Runella limosa, DQ372985<br />

Runella zeae, AF137381<br />

Runella slithyformis, M62786, type sp.<br />

Emticicia oligotrophica, AY904352, type sp.<br />

Leadbetterella byssophila, AY854022, type sp.<br />

Spirosoma rigui, EF507900<br />

Spirosoma linguale, AM000023, type sp.<br />

Larkinella insperata, AM000022<br />

Flectobacillus major, M62787, type sp.<br />

Flectobacillus lacus, DQ112352<br />

Arcicella aquatica, AJ535729, type sp.<br />

Flexibacter flexilis, M62794, type sp.<br />

Hymenobacter roseosalivarius, Y18833, type sp.<br />

Hymenobacter norwichensis, AJ549285<br />

Hymenobacter chitinivorans, Y18837<br />

Hymenobacter actinosclerus, Y17356<br />

Hymenobacter aerophilus, AJ276901<br />

Hymenobacter rigui, DQ089669<br />

Hymenobacter gelipurpurascens, Y18836<br />

Hymenobacter xinjiangensis, DQ888329<br />

Hymenobacter ocellatus, Y18835<br />

Adhaeribacter aquaticus, AJ626894, type sp.<br />

Pontibacter akesuensis, DQ672723<br />

Pontibacter actiniarum, AY989908, type sp.<br />

Effluviibacter roseus, AM049256, type sp.<br />

Flexibacter elegans, AB078048<br />

Flexibacter roseolus, AB078062<br />

Microscilla marina, AB078080, type sp.<br />

Flexibacter ruber, AB078065<br />

Flammeovirgaceae (8:0)<br />

Flammeovirga aprica, AB247553, type sp.<br />

Flammeovirga kamogawensis, AB251933<br />

Flammeovirga yaeyamensis, AB247554<br />

Perexilibacter aurantiacus, AB276355, type sp.<br />

Sediminitomix flava, AB255370, Cryomorphaceae, type sp.<br />

Flexithrix dorotheae, AB078077, type sp.<br />

Rapidithrix thailandica, AB265192, type sp.<br />

Persicobacter diffluens, AB260929, type sp.<br />

Flexibacter litoralis, AB078056, Cytophagaceae<br />

Flexibacter polymorphus, AB078059, Cytophagaceae<br />

<strong>The</strong>rmonema lapsum, L11703, Flammeovirgaceae, type sp.<br />

<strong>The</strong>rmonema rossianum, Y08956, Flammeovirgaceae<br />

Balneola vulgaris, AY576749, Chitinophagaceae, type sp.<br />

Rhodothermaceae (2:0)<br />

Rhodothermus marinus, X80994, type sp.<br />

Salinibacter ruber, CP000159, type sp.<br />

Chlorobi (11:0)<br />

Chlorobium clathratiforme, Y08108<br />

Chlorobium phaeobacteroides , CP000492<br />

Chlorobium limicola , AAHJ01000048, type sp.<br />

Chlorobium phaeovibrioides, Y08105<br />

Chlorobium luteolum, CP000096<br />

Chlorobaculum tepidum, M58468, type sp.<br />

Chlorobaculum thiosulfatiphilum, Y08102<br />

Chlorobium chlorovibrioides, Y10649<br />

Prosthecochloris aestuarii , AAIJ01000002, type sp.<br />

Prosthecochloris vibrioformis, M62791<br />

Chloroherpeton thalassium, AF170103, type sp.<br />

Caldithrix abyssi, AJ430587, Unclassified Deferribacterales, type sp.<br />

Fibrobacteres (2:0)<br />

Fibrobacter intestinalis, AJ496284<br />

Fibrobacter succinogenes subsp. succinogenes, AJ496032, type sp.<br />

Gemmatimonas aurantiaca, AB072735, Gemmatimonadaceae, type sp.<br />

Verrucomicrobia (19:0)<br />

Verrucomicrobiaceae (5:0)<br />

Prosthecobacter dejongeii, U60012<br />

Prosthecobacter fusiformis, U60015, type sp.<br />

Prosthecobacter debontii, U60014<br />

Prosthecobacter vanneervenii, U60013<br />

Verrucomicrobium spinosum, X90515, type sp.<br />

Rubritaleaceae (4:0)<br />

Rubritalea spongiae, AB297805<br />

Rubritalea tangerina, AB297806<br />

Rubritalea marina, DQ302104, type sp.<br />

Rubritalea squalenifaciens, AB277853

---

Akkermansia muciniphila, AY271254, Akkermansiaceae, type sp.<br />

Puniceicoccaceae and Opitutaceae (9:0)<br />

Pelagicoccus albus, AB286016<br />

Pelagicoccus litoralis, AB286017<br />

Pelagicoccus mobilis, AB286015, type sp.<br />

Pelagicoccus croceus, AB297922<br />

Opitutaceae (2:0)<br />

Alterococcus agarolyticus, AF075271, type sp.<br />

Opitutus terrae, AJ229235, type sp.<br />

Coraliomargarita akajimensis, AB266750, type sp.<br />

Cerasicoccus arenae, AB292183, type sp.<br />

Puniceicoccus vermicola, DQ539046, type sp.<br />

Lentisphaerae (2:0)<br />

Lentisphaera araneosa, AY390428, Lentisphaeraceae, type sp.<br />

Victivallis vadensis, AY049713, Victivallaceae, type sp.<br />

Chlamydiae (13:0)<br />

Chlamydiaceae (9:0)<br />

Chlamydia trachomatis, D89067, type sp.<br />

Chlamydia suis, U73110<br />

Chlamydia muridarum, D85718<br />

Chlamydophila pecorum, D88317<br />

Chlamydophila abortus, D85709<br />

Chlamydophila caviae, D85708<br />

Chlamydophila psittaci, U68447, type sp.<br />

Chlamydophila felis, D85701<br />

Chlamydophila pneumoniae, Z49873<br />

Parachlamydiaceae (2:0)<br />

Neochlamydia hartmannellae, AF177275, type sp.<br />

Parachlamydia acanthamoebae, Y07556, type sp.<br />

Simkania negevensis, U68460, Simkaniaceae, type sp.<br />

Waddlia chondrophila, AF042496, Waddliaceae, type sp.<br />

Planctomycetes (9:0)<br />

Planctomyces brasiliensis, AJ231190<br />

Planctomyces maris, AJ231184<br />

Planctomyces limnophilus, X62911<br />

Schlesneria paludicola, AM162407, type sp.<br />

Gemmata obscuriglobus, X56305, type sp.<br />

Blastopirellula marina, X62912, type sp.<br />

Pirellula staleyi, AJ231183, type sp.<br />

Rhodopirellula baltica, BX294149, type sp.<br />

Isosphaera pallida, AJ231195, type sp.<br />

Spirochaetes (58:0)<br />

Borrelia japonica, L40597, Spirochaetaceae<br />

Borrelia sinica, AB022101, Spirochaetaceae<br />

Borrelia burgdorferi , M59293, Spirochaetaceae<br />

Borrelia lusitaniae, X98228, Spirochaetaceae<br />

Borrelia garinii, D67018, Spirochaetaceae<br />

Borrelia valaisiana, X98232, Spirochaetaceae<br />

Borrelia turdi, D67022, Spirochaetaceae<br />

Borrelia tanukii, D67023, Spirochaetaceae<br />

Borrelia coriaceae, U42286, Spirochaetaceae<br />

Borrelia miyamotoi, D45192, Spirochaetaceae<br />

Borrelia turcica, AB111849, Spirochaetaceae<br />

Spirochaeta alkalica, X93927, Spirochaetaceae<br />

Spirochaeta americana, AF373921, Spirochaetaceae<br />

Spirochaeta halophila, M88722, Spirochaetaceae<br />

Spirochaeta africana, X93928, Spirochaetaceae<br />

Spirochaeta asiatica, X93926, Spirochaetaceae<br />

Spirochaeta bajacaliforniensis, AJ698859, Spirochaetaceae<br />

Spirochaeta smaragdinae, U80597, Spirochaetaceae<br />

Spirochaeta coccoides, AJ698092, Spirochaetaceae<br />

Treponema socranskii subsp. socranskii, AF033306, Spirochaetaceae<br />

Treponema socranskii subsp. buccale, AF033305, Spirochaetaceae<br />

Treponema socranskii subsp. paredis, AF033307, Spirochaetaceae<br />

Treponema amylovorum, Y09959, Spirochaetaceae<br />

Treponema parvum, AF302937, Spirochaetaceae<br />

Treponema porcinum, AY518274, Spirochaetaceae<br />

Treponema succinifaciens, M57738, Spirochaetaceae<br />

Treponema berlinense, AY230217, Spirochaetaceae<br />

Treponema saccharophilum, M71238, Spirochaetaceae<br />

Treponema lecithinolyticum, X87139, Spirochaetaceae<br />

Treponema maltophilum, X87140, Spirochaetaceae<br />

Treponema brennaborense, Y16568, Spirochaetaceae<br />

Treponema denticola, AF139203, Spirochaetaceae<br />

Treponema putidum, AJ543428, Spirochaetaceae<br />

Treponema medium, D85437, Spirochaetaceae<br />

Treponema azotonutricium, AF320287, Spirochaetaceae<br />

Treponema primitia, AF093252, Spirochaetaceae<br />

Brachyspiraceae (7:0)<br />

Brachyspira alvinipulli, EF455559<br />

Brachyspira pilosicoli, AY155458<br />

Brachyspira intermedia, U23033<br />

Brachyspira hyodysenteriae, U14930<br />

Brachyspira innocens, U14920<br />

Brachyspira murdochii, AY312492<br />

Brachyspira aalborgi, Z22781, type sp.<br />

Leptospiraceae (15:0)<br />

Leptospira borgpetersenii , AY887899<br />

Leptospira weilii , AY631877<br />

Leptospira santarosai, AY631883

---

Leptospira santarosai, AY631883<br />

Leptospira alexanderi , AY631880<br />

Leptospira interrogans, Z12817, type sp.<br />

Leptospira kirschneri , AY631895<br />

Leptospira noguchii , AY631886<br />

Leptospira broomii, AY796065<br />

Leptospira fainei, AY631885<br />

Leptospira inadai, Z21634<br />

Leptospira biflexa , AY631876<br />

Leptospira meyeri , AY631878<br />

Leptospira wolbachii , AY631879<br />

Leptonema illini, AY714984, type sp.<br />

Turneriella parva, AY293856, type sp.<br />

Nitrospirae (5:0)<br />

Leptospirillum ferriphilum, AF356829, Nitrospiraceae<br />

Leptospirillum ferrooxidans, X86776, Nitrospiraceae, type sp.<br />

Nitrospira moscoviensis, X82558, Nitrospiraceae<br />

<strong>The</strong>rmodesulfovibrio islandicus, X96726, Nitrospiraceae<br />

<strong>The</strong>rmodesulfovibrio yellowstonii, AB231858, Nitrospiraceae, type sp.<br />

Acidobacteria (4:0)<br />

Acidobacterium capsulatum, D26171, type sp.<br />

Terriglobus roseus, DQ660892, type sp.<br />

Geothrix fermentans, U41563, type sp.<br />

Holophaga foetida, X77215, type sp.<br />

Deferribacteres (8:0)<br />

Deferribacter desulfuricans, AB086060<br />

Deferribacter thermophilus, U75602, type sp.<br />

Deferribacter abyssi, AJ515882<br />

Flexistipes sinusarabici, M59231, type sp.<br />

Geovibrio ferrireducens, X95744, type sp.<br />

Geovibrio thiophilus, AJ299402<br />

Denitrovibrio acetiphilus, AF146526, type sp.<br />

Mucispirillum schaedleri, AY387670, type sp.<br />

Chrysiogenes arsenatis , X81319, Chrysiogenaceae, type sp.<br />

Fusobacteria (34:0)<br />

Fusobacteriaceae (26:0)<br />

Filifactor alocis, X55406, Peptostreptococcaceae<br />

Fusobacterium nucleatum subsp. animalis, X55404<br />

Fusobacterium simiae, M58685<br />

Fusobacterium nucleatum subsp. nucleatum, AE009951, type sp.<br />

Fusobacterium canifelinum, AY162221<br />

Fusobacterium nucleatum subsp. fusiforme, X55403<br />

Fusobacterium nucleatum subsp. vincentii , AABF01000111<br />

Fusobacterium nucleatum subsp. polymorphum, AF287812<br />

Fusobacterium periodonticum, X55405<br />

Fusobacterium russii, M58681<br />

Fusobacterium equinum, AJ295750<br />

Fusobacterium necrophorum subsp. necrophorum, AJ867039<br />

Fusobacterium gonidiaformans, X55410<br />

Fusobacterium ulcerans, X55412<br />

Fusobacterium varium, AJ867036<br />

Clostridium rectum, X77850, Clostridiaceae<br />

Fusobacterium mortiferum, AJ867032<br />

Fusobacterium necrogenes, AJ867034<br />

Fusobacterium perfoetens, M58684<br />

Cetobacterium somerae, AJ438155<br />

Cetobacterium ceti, X78419, type sp.<br />

Ilyobacter polytropus, AJ307981, type sp.<br />

Propionigenium maris, X84049<br />

Ilyobacter tartaricus, AJ307982<br />

Propionigenium modestum, X54275, type sp.<br />

Ilyobacter insuetus, AJ307980<br />

Leptotrichia shahii, AY029806, Leptotrichiaceae<br />

Leptotrichia trevisanii, AF206305, Leptotrichiaceae<br />

Leptotrichia wadei, AY029802, Leptotrichiaceae<br />

Leptotrichia hofstadii, AY029803, Leptotrichiaceae<br />

Leptotrichia goodfellowii, AY029807, Leptotrichiaceae<br />

Streptobacillus moniliformis, Z35305, Leptotrichiaceae, type sp.<br />

Sneathia sanguinegens, AJ344093, Leptotrichiaceae, type sp.<br />

Sebaldella termitidis, M58678, Leptotrichiaceae, type sp.<br />

Halobacteroidaceae (11:0)<br />

Halobacteroides elegans, L37423<br />

Halanaerobacter lacunarum, X89075<br />

Halanaerobacter salinarius, Y14212<br />

Halobacteroides halobius, X89074, type sp.<br />

Halonatronum saccharophilum, AY014858, type sp.<br />

Orenia sivashensis, AF152595<br />

Orenia marismortui, X89073, type sp.<br />

Orenia salinaria, Y18485<br />

Natroniella acetigena, X95817, type sp.<br />

Acetohalobium arabaticum, X89077, type sp.<br />

Selenihalanaerobacter shriftii, AF310247, type sp.<br />

Halanaerobiaceae (11:0)<br />

Halanaerobium congolense, U76632<br />

Halanaerobium saccharolyticum subsp. senegalense, X89070<br />

Halanaerobium saccharolyticum subsp. saccharolyticum, X89069<br />

Halanaerobium praevalens, AB022034, type sp.<br />

Halanaerobium kushneri, U86446<br />

Halanaerobium acetethylicum, X89071<br />

Halanaerobium fermentans, AB023308<br />

Halanaerobium lacusrosei, L39787<br />

Halanaerobium salsuginis, L22890<br />

Halocella cellulosilytica, X89072, type sp.

---

Firmicutes (1475:0)<br />

Bacilli (1036:0)<br />

Halothermothrix orenii, L22016, type sp.<br />

Cyanobacteria (5:0)<br />

Oscillatoriales (2:0)<br />

Halospirulina tapeticola, Y18791, type sp.<br />

Planktothricoides raciborskii , AB045960, type sp.<br />

Prochlorothrix hollandica, AJ007907, Prochlorotrichaceae, type sp.<br />

Prochlorococcaceae (2:0)<br />

Prochlorococcus marinus subsp. pastoris, AF180967<br />

Prochlorococcus marinus subsp. marinus , AE017126, type sp.<br />

Lactobacillales (321:0)<br />

Enterococcaceae and Streptococcaceae (112:0)<br />

Streptococcaceae (72:0)<br />

Streptococcus ferus, AY058218<br />

Streptococcus macacae, AY188351<br />

Streptococcus orisratti, AF124350<br />

Streptococcus ratti, AJ420201<br />

Streptococcus devriesei, AJ564067<br />

Streptococcus equi subsp. zooepidemicus, AB002516<br />

Streptococcus equi subsp. equi, DQ303186<br />

Streptococcus equi subsp. ruminatorum, AJ605748<br />

Streptococcus criceti, AJ420198<br />

Streptococcus orisuis, AB182324<br />

Streptococcus downei, AY188350<br />

Streptococcus sobrinus, AY188349<br />

Lactococcus lactis subsp. hordniae, AB100804<br />

Lactococcus lactis subsp. lactis, AB100803<br />

Lactococcus lactis subsp. cremoris, AB100802<br />

Lactovum miscens, AJ439543<br />

Lactococcus piscium, DQ343754<br />

Streptococcus hyovaginalis, Y07601<br />

Streptococcus thoraltensis, Y09007<br />

Streptococcus entericus, AJ409287<br />

Streptococcus marimammalium, AJ634751<br />

Streptococcus minor, AY232832<br />

Streptococcus ovis, Y17358<br />

Streptococcus gallinaceus, AJ307888<br />

Streptococcus parauberis, AY584477<br />

Streptococcus iniae, AF335572<br />

Streptococcus castoreus, AJ606047<br />

Streptococcus pseudoporcinus, DQ303209<br />

Streptococcus didelphis, AF176103<br />

Streptococcus phocae, AJ621053<br />

Streptococcus porcinus, AB002523<br />

Streptococcus dysgalactiae subsp. equisimilis, DQ232540<br />

Streptococcus dysgalactiae subsp. dysgalactiae, AB002485<br />

Streptococcus halichoeri, AJ606046<br />

Streptococcus agalactiae, AB023574<br />

Streptococcus canis, AB002483<br />

Streptococcus pyogenes, AB002521, type sp.<br />

Streptococcus ictaluri, DQ462421<br />

Streptococcus urinalis, AJ131965<br />

Streptococcus uberis, AB023573<br />

Streptococcus infantarius subsp. infantarius, AF177729<br />

Streptococcus infantarius subsp. coli, AF429763<br />

Streptococcus lutetiensis, AJ297215<br />

Streptococcus equinus, AJ301607<br />

Streptococcus gallolyticus subsp. macedonicus, Z94012<br />

Streptococcus gallolyticus subsp. pasteurianus, DQ232528<br />

Streptococcus gallolyticus subsp. gallolyticus, X94337<br />

Streptococcus alactolyticus, AF201899<br />

Streptococcus salivarius, AY188352<br />

Streptococcus vestibularis, AY188353<br />

Streptococcus thermophilus, AY188354<br />

Streptococcus hyointestinalis, AF201898<br />

Streptococcus suis, AF009477<br />

Streptococcus peroris, AB008314<br />

Streptococcus oligofermentans, AY099095<br />

Streptococcus sinensis, AF432856<br />

Streptococcus cristatus, AY188347<br />

Streptococcus gordonii, AF003931<br />

Streptococcus mutans, AY188348<br />

Streptococcus anginosus, AF104678<br />

Streptococcus massiliensis, AY769997<br />

Streptococcus intermedius, AF104671<br />

Streptococcus constellatus subsp. pharyngis, AY309095<br />

Streptococcus constellatus subsp. constellatus, AF104676<br />

Streptococcus sanguinis, AF003928<br />

Streptococcus pneumoniae, AF003930<br />

Streptococcus pseudopneumoniae, AY612844<br />

Streptococcus mitis, AF003929<br />

Streptococcus oralis, AY485602<br />

Streptococcus infantis, AY485603<br />

Streptococcus australis, AY485604<br />

Streptococcus parasanguinis, AF003933<br />

Pilibacter termitis, AY533171, type sp.<br />

Enterococcus cecorum, AF061009<br />

Enterococcus columbae, AF061006<br />

Enterococcus italicus, AJ626902<br />

Enterococcus camelliae, EF154454<br />

Enterococcus sulfureus, AF061001<br />

Enterococcus saccharolyticus, AF061004

---

Tetragenococcus koreensis, AY690334<br />

Tetragenococcus solitarius, AJ301840<br />

Tetragenococcus halophilus, D88668, type sp.<br />

Tetragenococcus muriaticus, D88824<br />

Enterococcus asini, Y11621<br />

Enterococcus mundtii, AF061013<br />

Enterococcus villorum, AJ271329<br />

Enterococcus hirae, Y17302<br />

Enterococcus durans, AJ276354<br />

Enterococcus faecium, AJ301830<br />

Enterococcus ratti, AF539705<br />

Enterococcus canis, X76177<br />

Melissococcus plutonius, AY862507, type sp.<br />

Enterococcus casseliflavus, AF039903<br />

Enterococcus gallinarum, AF039900<br />

Enterococcus canintestini, AJ888906<br />

Enterococcus dispar, AF061007<br />

Enterococcus devriesei, AJ891167<br />

Enterococcus pseudoavium, AF061002<br />

Enterococcus gilvus, DQ411810<br />

Enterococcus malodoratus, AJ301835<br />

Enterococcus avium, AF133535<br />

Enterococcus raffinosus, Y18296<br />

Enterococcus hermanniensis, AY396047<br />

Enterococcus pallens, DQ411812<br />

Enterococcus aquimarinus, AJ877015<br />

Enterococcus phoeniculicola, AY028437<br />

Enterococcus caccae, AY943820<br />

Enterococcus silesiacus, AM039966<br />

Enterococcus haemoperoxidus, AF286832<br />

Enterococcus moraviensis, AF286831<br />

Enterococcus faecalis, AB012212, type sp.<br />

Enterococcus termitis, AM039968<br />

Carnobacteriaceae (46:0)<br />

Facklamia ignava, Y15716, Aerococcaceae<br />

Facklamia sourekii, Y17312, Aerococcaceae<br />

Facklamia tabacinasalis, Y17820, Aerococcaceae<br />

Ignavigranum ruoffiae, Y16426, Aerococcaceae, type sp.<br />

Facklamia languida, Y18053, Aerococcaceae<br />

Facklamia miroungae, AJ277381, Aerococcaceae<br />

Facklamia hominis, Y10772, Aerococcaceae, type sp.<br />

Dolosicoccus paucivorans, AJ012666, Aerococcaceae, type sp.<br />

Globicatella sulfidifaciens, AJ297627, Aerococcaceae<br />

Eremococcus coleocola, Y17780, Aerococcaceae, type sp.<br />

Abiotrophia defectiva, D50541, Aerococcaceae, type sp.<br />

Aerococcus christensenii, Y17005, Aerococcaceae<br />

Aerococcus urinae, M77819, Aerococcaceae<br />

Aerococcus sanguinicola, AJ276512, Aerococcaceae<br />

Aerococcus suis, AM230658, Aerococcaceae<br />

Aerococcus urinaeequi, D87677, Aerococcaceae<br />

Aerococcus urinaehominis, AJ278341, Aerococcaceae<br />

Granulicatella adiacens, D50540, type sp.<br />

Granulicatella elegans, AF016390<br />

Granulicatella balaenopterae, Y16547<br />

Atopobacter phocae, Y16546, Enterococcaceae, type sp.<br />

Trichococcus collinsii, AJ306612<br />

Trichococcus pasteurii, X87150<br />

Trichococcus patagoniensis, AF394926<br />

Trichococcus flocculiformis, AJ306611, type sp.<br />

Trichococcus palustris, AJ296179<br />

Alkalibacterium olivapovliticus, AF143511, type sp.<br />

Alkalibacterium psychrotolerans, AB125938<br />

Alkalibacterium iburiense, AB188091<br />

Marinilactibacillus piezotolerans, AB247277<br />

Marinilactibacillus psychrotolerans, AB083406, type sp.<br />

<strong>All</strong>ofustis seminis, AJ410303, type sp.<br />

Atopostipes suicloacalis, AF445248, type sp.<br />

<strong>All</strong>oiococcus otitis, X59765, type sp.<br />

Dolosigranulum pigrum, X70907, type sp.<br />

Atopococcus tabaci, AJ634917, type sp.<br />

Carnobacterium funditum, S86170<br />

Carnobacterium mobile, AB083414<br />

Carnobacterium pleistocenium, AF450136<br />

Carnobacterium inhibens, Z73313<br />

Carnobacterium viridans, AF425608<br />

Carnobacterium gallinarum, AJ387905<br />

Carnobacterium maltaromaticum, M58825<br />

Carnobacterium divergens, M58816, type sp.<br />

Isobaculum melis, AJ302648, type sp.<br />

Desemzia incerta, Y17300, type sp.<br />

Vagococcus fessus, AJ243326, Enterococcaceae<br />

Vagococcus elongatus, AF445297, Enterococcaceae<br />

Vagococcus lutrae, Y17152, Enterococcaceae<br />

Vagococcus carniphilus, AY179329, Enterococcaceae<br />

Vagococcus fluvialis, Y18098, Enterococcaceae, type sp.<br />

Vagococcus salmoninarum, Y18097, Enterococcaceae<br />

Lactobacillaceae (126:0)<br />

Lactobacillus antri, AY253659<br />

Lactobacillus oris, X94229<br />

Lactobacillus panis, X94230<br />

Lactobacillus frumenti, AJ250074<br />

Lactobacillus pontis, X76329<br />

Lactobacillus vaginalis, AF243177<br />

Lactobacillus reuteri, L23507<br />

Lactobacillus coleohominis, AM113776<br />

Lactobacillus secaliphilus, AM279150<br />

Lactobacillus ingluviei, AF333975<br />

Lactobacillus gastricus, AY253658<br />

Lactobacillus mucosae, AF126738

---

Lactobacillus rossiae, AJ564009<br />

Lactobacillus suebicus, AJ575744<br />

Lactobacillus vaccinostercus, AJ621556<br />

Lactobacillus oligofermentans, AY733084<br />

Lactobacillus casei, AF469172<br />

Lactobacillus zeae, D86516<br />

Lactobacillus paracasei subsp. tolerans, AB181950<br />

Lactobacillus paracasei subsp. paracasei, D79212<br />

Lactobacillus rhamnosus, D16552<br />

Lactobacillus camelliae, AB257864<br />

Lactobacillus manihotivorans, AF000162<br />

Lactobacillus pantheris, AF413523<br />

Lactobacillus thailandensis, AB257863<br />

Lactobacillus sharpeae, M58831<br />

Pediococcus cellicola, AY956788<br />

Pediococcus siamensis, AB258357<br />

Pediococcus ethanolidurans, AY956789<br />

Pediococcus damnosus, AJ318414, type sp.<br />

Pediococcus inopinatus, AJ271383<br />

Pediococcus parvulus, D88528<br />

Pediococcus acidilactici, AJ305320<br />

Pediococcus pentosaceus, AJ305321<br />

Pediococcus stilesii, AJ973157<br />

Pediococcus claussenii, AJ621555<br />

Lactobacillus hammesii, AJ632219<br />

Lactobacillus parabrevis, AM158249<br />

Lactobacillus brevis, M58810<br />

Lactobacillus spicheri, AJ534844<br />

Lactobacillus acidifarinae, AJ632158<br />

Lactobacillus zymae, AJ632157<br />

Lactobacillus namurensis, AM259118<br />

Lactobacillus pentosus, D79211<br />

Lactobacillus plantarum subsp. plantarum, AJ965482<br />

Lactobacillus plantarum subsp. argentoratensis, AJ640078<br />

Lactobacillus paraplantarum, AJ306297<br />

Lactobacillus collinoides, AB005893<br />

Lactobacillus paracollinoides, AJ786665<br />

Lactobacillus malefermentans, AM113783<br />

Lactobacillus buchneri, AB205055<br />

Lactobacillus parakefiri, AY026750<br />

Lactobacillus kefiri, AJ621553<br />

Lactobacillus parabuchneri, AB205056<br />

Lactobacillus diolivorans, AF264701<br />

Lactobacillus farraginis, AB262731<br />

Lactobacillus hilgardii, M58821<br />

Lactobacillus parafarraginis, AB262734<br />

Lactobacillus fructivorans, X76330<br />

Lactobacillus homohiochii, AJ621552<br />

Lactobacillus lindneri, X95421<br />

Lactobacillus sanfranciscensis, X76327<br />

Lactobacillus kunkeei, Y11374<br />

Lactobacillus acidipiscis, AB023836<br />

Lactobacillus aviarius subsp. aviarius, M58808<br />

Lactobacillus salivarius, AF089108<br />

Lactobacillus hayakitensis, AB267406<br />

Lactobacillus saerimneri, AY255802<br />

Lactobacillus agilis, M58803<br />

Lactobacillus equi, AB048833<br />

Lactobacillus murinus, AJ621554<br />

Lactobacillus apodemi, AJ871178<br />

Lactobacillus mali, M58824<br />

Lactobacillus ghanensis, DQ523489<br />

Lactobacillus nagelii, AB162131<br />

Lactobacillus vini, AJ576009<br />

Lactobacillus satsumensis, AB154519<br />

Paralactobacillus selangorensis, AF049745, type sp.<br />

Lactobacillus harbinensis, AB196123<br />

Lactobacillus perolens, Y19167<br />

Lactobacillus composti, AB268118<br />

Lactobacillus amylovorus, AY944408<br />

Lactobacillus sobrius, AY700063<br />

Lactobacillus amylolyticus, Y17361<br />

Lactobacillus hamsteri, AJ306298<br />

Lactobacillus kitasatonis, AB107638<br />

Lactobacillus acidophilus, AY773947<br />

Lactobacillus kefiranofaciens subsp. kefirgranum, AM113782<br />

Lactobacillus kefiranofaciens subsp. kefiranofaciens, AM113781<br />

Lactobacillus crispatus, AF257097<br />

Lactobacillus ultunensis, AY253660<br />

Lactobacillus gallinarum, AJ417737<br />

Lactobacillus helveticus, AM113779<br />

Lactobacillus intestinalis, AJ306299<br />

Lactobacillus kalixensis, AY253657<br />

Lactobacillus delbrueckii subsp. delbrueckii, AY773949, type sp.<br />

Lactobacillus delbrueckii subsp. lactis, AY050173<br />

Lactobacillus delbrueckii subsp. indicus, AY421720<br />

Lactobacillus delbrueckii subsp. bulgaricus , CR954253<br />

Lactobacillus acetotolerans, M58801<br />

Lactobacillus fornicalis, Y18654<br />

Lactobacillus jensenii, AF243176<br />

Lactobacillus psittaci, AJ272391<br />

Lactobacillus gasseri, AF519171<br />

Lactobacillus johnsonii, AJ002515<br />

Lactobacillus iners, Y16329<br />

Lactobacillus amylophilus, M58806<br />

Lactobacillus amylotrophicus, AM236149<br />

Lactobacillus concavus, AY683322<br />

Pediococcus dextrinicus, D87679<br />

Lactobacillus algidus, AB033209<br />

Lactobacillus kimchii, AF183558<br />

Lactobacillus paralimentarius, AB018528<br />

Lactobacillus alimentarius, M58804

---

Lactobacillus crustorum, AM285450<br />

Lactobacillus farciminis, M58817<br />

Lactobacillus mindensis, AJ313530<br />

Lactobacillus nantensis, AY690834<br />

Lactobacillus versmoldensis, AJ496791<br />

Lactobacillus coryniformis subsp. coryniformis, M58813<br />

Lactobacillus coryniformis subsp. torquens, AJ575741<br />

Lactobacillus rennini, AJ576007<br />

Lactobacillus curvatus, AM113777<br />

Lactobacillus sakei subsp. sakei, AM113784<br />

Lactobacillus sakei subsp. carnosus, AY204889<br />

Lactobacillus graminis, AM113778<br />

Leuconostocaceae (30:0)<br />

Leuconostoc gelidum, AF175402<br />

Leuconostoc kimchii, AF173986<br />

Leuconostoc inhae, AF439560<br />

Leuconostoc gasicomitatum, AF231131<br />

Leuconostoc carnosum, AB022925<br />

Leuconostoc citreum, AF111948<br />

Leuconostoc holzapfelii, AM600682<br />

Leuconostoc lactis, AB023968<br />

Leuconostoc pseudomesenteroides, AB023237<br />

Leuconostoc mesenteroides subsp. mesenteroides , CP000414, type sp.<br />

Leuconostoc mesenteroides subsp. dextranicum, AB023246<br />

Leuconostoc mesenteroides subsp. cremoris, AB023247<br />

Leuconostoc durionis, AJ780981<br />

Leuconostoc fructosum, AF360737<br />

Leuconostoc ficulneum, AF360736<br />

Leuconostoc pseudoficulneum, AY169967<br />

Leuconostoc fallax, AF360738<br />

Oenococcus kitaharae, AB221475<br />

Oenococcus oeni, AB022924, type sp.<br />

Weissella minor, AB022920<br />

Weissella viridescens, AB023236, type sp.<br />

Weissella halotolerans, AB022926<br />

Weissella paramesenteroides, AB023238<br />

Weissella thailandensis, AB023838<br />

Weissella hellenica, S67831<br />

Weissella confusa, AB023241<br />

Weissella cibaria, AJ295989<br />

Weissella kandleri, M23038<br />

Weissella koreensis, AY035891<br />

Weissella soli, AY028260<br />

Catellicoccus marimammalium, AJ854484, Enterococcaceae, type sp.<br />

Listeriaceae (9:0)<br />

Listeria monocytogenes, X56153, type sp.<br />

Listeria welshimeri, DQ065846<br />

Listeria innocua, X98527<br />

Listeria seeligeri, DQ065845<br />

Listeria ivanovii subsp. londoniensis, X98529<br />

Listeria ivanovii subsp. ivanovii, X98528<br />

Listeria grayi, X98526<br />

Brochothrix campestris, X56156<br />

Brochothrix thermosphacta, AY543023, type sp.<br />

Planococcaceae (24:0)<br />

Planococcus citreus, X62172, type sp.<br />

Planococcus rifietoensis, AJ493659<br />

Planococcus columbae, AJ966515<br />

Planococcus maitriensis, AJ544622<br />

Planococcus maritimus, AF500007<br />

Planomicrobium alkanoclasticum, AF029364<br />

Planomicrobium chinense, AJ697862<br />

Planomicrobium koreense, AF144750, type sp.<br />

Planomicrobium psychrophilum, AJ314746<br />

Planomicrobium mcmeekinii, AF041791<br />

Planomicrobium okeanokoites, D55729<br />

Planococcus stackebrandtii, AY437845<br />

Planococcus antarcticus, AJ314745<br />

Planococcus kocurii, X62173<br />

Planococcus donghaensis, EF079063<br />

Sporosarcina globispora, X68415<br />

Sporosarcina psychrophila, D16277<br />

Filibacter limicola, AJ292316, type sp.<br />

Sporosarcina soli, DQ073394<br />

Sporosarcina aquimarina, AF202056<br />

Sporosarcina ureae, AF202057, type sp.<br />

Sporosarcina saromensis, AB243859<br />

Sporosarcina koreensis, DQ073393<br />

Sporosarcina macmurdoensis, AJ514408<br />

Bacillus psychrotolerans, AJ277983, Bacillaceae<br />

Bacillus psychrodurans, AJ277984, Bacillaceae<br />

Ureibacillus thermophilus, DQ348072, Bacillaceae<br />

Ureibacillus composti, DQ348071, Bacillaceae<br />

Ureibacillus suwonensis, AY850379, Bacillaceae<br />

Ureibacillus terrenus, AJ276403, Bacillaceae<br />

Ureibacillus thermosphaericus, AB101594, Bacillaceae, type sp.<br />

Bacillus massiliensis, AY677116, Bacillaceae<br />

Lysinibacillus fusiformis, AJ310083, Bacillaceae<br />

Lysinibacillus sphaericus, AJ310084, Bacillaceae<br />

Lysinibacillus boronitolerans, AB199591, Bacillaceae, type sp.<br />

Bacillus decisifrondis, DQ465405, Bacillaceae<br />

Caryophanaceae (2:0)<br />

Caryophanon latum, X70314, type sp.<br />

Caryophanon tenue, X70315<br />

Bacillus silvestris, AJ006086, Bacillaceae<br />

Bacillus odysseyi, AF526913, Bacillaceae

---

Bacillus odysseyi, AF526913, Bacillaceae<br />

Kurthia gibsonii, AB271738, Planococcaceae<br />

Kurthia zopfii, AB271740, Planococcaceae, type sp.<br />

Kurthia sibirica, AJ605774, Planococcaceae<br />

Viridibacillus arenosi, AJ627212, Bacillaceae<br />

Viridibacillus arvi, AJ627211, Bacillaceae, type sp.<br />

Viridibacillus neidei, AF169520, Bacillaceae<br />

Bacillus pycnus, AB271739, Bacillaceae<br />

Staphylococcaceae (66:0)<br />

Staphylococcus saprophyticus subsp. bovis, AB233327<br />

Staphylococcus xylosus, D83374<br />

Staphylococcus saprophyticus subsp. saprophyticus, AP008934<br />

Staphylococcus arlettae, AB009933<br />

Staphylococcus gallinarum, D83366<br />

Staphylococcus equorum subsp. linens, AF527483<br />

Staphylococcus equorum subsp. equorum, AB009939<br />

Staphylococcus succinus subsp. casei, AJ320272<br />

Staphylococcus succinus subsp. succinus, AF004220<br />

Staphylococcus kloosii, AB009940<br />

Staphylococcus cohnii subsp. cohnii, D83361<br />

Staphylococcus nepalensis, AJ517414<br />

Staphylococcus cohnii subsp. urealyticus, AB009936<br />

Staphylococcus pettenkoferi, AF322002<br />

Staphylococcus delphini, AB009938<br />

Staphylococcus intermedius, D83369<br />

Staphylococcus pseudintermedius, AJ780976<br />

Staphylococcus schleiferi subsp. coagulans, AB009945<br />

Staphylococcus schleiferi subsp. schleiferi, S83568<br />

Staphylococcus chromogenes, D83360<br />

Staphylococcus hyicus, D83368<br />

Staphylococcus lutrae, X84731<br />

Staphylococcus felis, D83364<br />

Staphylococcus condimenti, Y15750<br />

Staphylococcus piscifermentans, Y15754<br />

Staphylococcus simulans, D83373<br />

Staphylococcus carnosus subsp. carnosus, AB009934<br />

Staphylococcus auricularis, D83358<br />

Staphylococcus epidermidis, D83363<br />

Staphylococcus saccharolyticus, L37602<br />

Staphylococcus capitis subsp. urealyticus, AB009937<br />

Staphylococcus capitis subsp. capitis, L37599<br />

Staphylococcus caprae, AB009935<br />

Staphylococcus aureus subsp. aureus, L36472, type sp.<br />

Staphylococcus aureus subsp. anaerobius, D83355<br />

Staphylococcus simiae, AY727530<br />

Staphylococcus pasteuri, AB009944<br />

Staphylococcus warneri, L37603<br />

Staphylococcus hominis subsp. novobiosepticus, AB233326<br />

Staphylococcus hominis subsp. hominis, X66101<br />

Staphylococcus haemolyticus, X66100<br />

Staphylococcus lugdunensis, AB009941<br />

Staphylococcus sciuri subsp. rodentium, AB233332<br />

Staphylococcus sciuri subsp. carnaticus, AB233331<br />

Staphylococcus sciuri subsp. sciuri, AJ421446<br />

Staphylococcus lentus, D83370<br />

Staphylococcus vitulinus, AB009946<br />

Staphylococcus fleurettii, AB233330<br />

Macrococcus bovicus, Y15714<br />

Macrococcus lamae, AY119687<br />

Macrococcus brunensis, AY119686<br />

Macrococcus carouselicus, Y15713<br />

Macrococcus equipercicus, Y15712, type sp.<br />

Macrococcus hajekii, AY119685<br />

Macrococcus caseolyticus, D83359<br />

Salinicoccus jeotgali, DQ471329<br />

Salinicoccus salsiraiae, DQ333949<br />

Salinicoccus siamensis, AB258358<br />

Salinicoccus hispanicus, AY028927<br />

Salinicoccus luteus, DQ352839<br />

Salinicoccus roseus, X94559, type sp.<br />

Salinicoccus alkaliphilus, AF275710<br />

Salinicoccus kunmingensis, DQ837380<br />

Jeotgalicoccus halotolerans, AY028925, type sp.<br />

Jeotgalicoccus psychrophilus, AY028926<br />

Jeotgalicoccus pinnipedialis, AJ251530<br />

Bacillus mycoides, AB021192, Bacillaceae<br />

Bacillus weihenstephanensis, AB021199, Bacillaceae<br />

Bacillus thuringiensis, D16281, Bacillaceae<br />

Bacillus cereus, AE016877, Bacillaceae<br />

Bacillus anthracis, AB190217, Bacillaceae<br />

Bacillus pseudomycoides, AF013121, Bacillaceae<br />

Gemella bergeri, Y13365, Staphylococcaceae<br />

Gemella cuniculi, AJ251987, Staphylococcaceae<br />

Gemella palaticanis, Y17280, Staphylococcaceae<br />

Gemella morbillorum, L14327, Staphylococcaceae<br />

Gemella haemolysans, L14326, Staphylococcaceae, type sp.<br />

Gemella sanguinis, Y13364, Staphylococcaceae<br />

Marinibacillus campisalis, AY190535, Bacillaceae<br />

Marinibacillus marinus, AJ237708, Bacillaceae, type sp.<br />

Jeotgalibacillus alimentarius, AF281158, Bacillaceae, type sp.<br />

Bacillus koreensis, AY667496, Bacillaceae<br />

Bacillus aquimaris, AF483625, Bacillaceae<br />

Bacillus vietnamensis, AB099708, Bacillaceae<br />

Bacillus marisflavi, AF483624, Bacillaceae<br />

Bacillus seohaeanensis, AY667495, Bacillaceae<br />

Bacillaceae (16:0)<br />

Bacillus mojavensis, AB021191<br />

Brevibacterium halotolerans, AM747812, Brevibacteriaceae<br />

Bacillus subtilis subsp. spizizenii, AF074970<br />

Bacillus vallismortis, AB021198

---

Bacillus subtilis subsp. subtilis, AJ276351, type sp.<br />

Bacillus amyloliquefaciens, AB255669<br />

Bacillus velezensis, AY603658<br />

Bacillus aerius, AJ831843<br />

Bacillus aerophilus, AJ831844<br />

Bacillus stratosphericus, AJ831841<br />

Bacillus licheniformis , CP000002<br />

Bacillus sonorensis, AF302118<br />

Bacillus atrophaeus, AB021181<br />

Bacillus safensis, AF234854<br />

Bacillus pumilus, AY876289<br />

Bacillus altitudinis, AJ831842<br />

Bacillus coagulans, AB271752, Bacillaceae<br />

Bacillus oleronius, AY988598, Bacillaceae<br />

Bacillus sporothermodurans, U49078, Bacillaceae<br />

Bacillus acidicola, AF547209, Bacillaceae<br />

Bacillus ginsengihumi, AB245378, Bacillaceae<br />

Bacillus endophyticus, AF295302, Bacillaceae<br />

Bacillus smithii, Z26935, Bacillaceae<br />

Bacillus carboniphilus, AB021182, Bacillaceae<br />

Bacillus shackletonii, AJ250318, Bacillaceae<br />

Halobacillus campisalis, EF486356, Bacillaceae<br />

Halobacillus salinus, AF500003, Bacillaceae<br />

Halobacillus locisalis, AY190534, Bacillaceae<br />

Halobacillus trueperi, AJ310149, Bacillaceae<br />

Halobacillus faecis, AB243865, Bacillaceae<br />

Halobacillus kuroshimensis, AB195680, Bacillaceae<br />

Halobacillus aidingensis, AY351389, Bacillaceae<br />

Halobacillus karajensis, AJ486874, Bacillaceae<br />

Salimicrobium halophilum, AB021188, Bacillaceae<br />

Salimicrobium luteum, DQ227305, Bacillaceae<br />

Salimicrobium album, X90834, Bacillaceae, type sp.<br />

Halobacillus litoralis, X94558, Bacillaceae<br />

Halobacillus yeomjeoni, AY881246, Bacillaceae<br />

Halobacillus profundi, AB189298, Bacillaceae<br />

Halobacillus dabanensis, AY351395, Bacillaceae<br />

Thalassobacillus devorans, AJ717299, Bacillaceae, type sp.<br />

Amphibacillus sediminis, AB243866, Bacillaceae<br />

Amphibacillus tropicus, AF418602, Bacillaceae<br />

Amphibacillus xylanus, D82065, Bacillaceae, type sp.<br />

Halolactibacillus halophilus, AB196783, Bacillaceae, type sp.<br />

Halolactibacillus miurensis, AB196784, Bacillaceae<br />

Paraliobacillus ryukyuensis, AB087828, Bacillaceae, type sp.<br />

Gracilibacillus boraciitolerans, AB197126, Bacillaceae<br />

Gracilibacillus orientalis, AM040716, Bacillaceae<br />

Gracilibacillus dipsosauri, AB101591, Bacillaceae<br />

Gracilibacillus halotolerans, AF036922, Bacillaceae, type sp.<br />

Amphibacillus fermentum, AF418603, Bacillaceae<br />

Virgibacillus koreensis, AY616012, Bacillaceae<br />

Alkalibacillus filiformis, AJ493661, Bacillaceae<br />

Alkalibacillus haloalkaliphilus, AJ238041, Bacillaceae, type sp.<br />

Alkalibacillus silvisoli, AB264528, Bacillaceae<br />

Alkalibacillus salilacus, AY671976, Bacillaceae<br />

Halalkalibacillus halophilus, AB264529, Bacillaceae, type sp.<br />

Filobacillus milosensis, AJ238042, Bacillaceae, type sp.<br />

Tenuibacillus multivorans, AY319933, Bacillaceae, type sp.<br />

Piscibacillus salipiscarius, AB194046, Bacillaceae, type sp.<br />

Pontibacillus chungwhensis, AY553296, Bacillaceae, type sp.<br />

Pontibacillus marinus, AY603977, Bacillaceae<br />

Salinibacillus aidingensis, AY321436, Bacillaceae, type sp.<br />

Salinibacillus kushneri, AY321434, Bacillaceae<br />

Salirhabdus euzebyi, AM292417, Bacillaceae, type sp.<br />

Pelagibacillus goriensis, DQ519571, Bacillaceae, type sp.<br />

Terribacillus saccharophilus, AB243845, Bacillaceae, type sp.<br />

Terribacillus halophilus, AB243849, Bacillaceae<br />

Lentibacillus halodurans, AY321433, Bacillaceae<br />

Lentibacillus salarius, AY667493, Bacillaceae<br />

Lentibacillus salicampi, AY057394, Bacillaceae, type sp.<br />

Lentibacillus kapialis, AB231905, Bacillaceae<br />

Lentibacillus halophilus, AB191345, Bacillaceae<br />

Lentibacillus juripiscarius, AB127980, Bacillaceae<br />

Lentibacillus lacisalsi, AY667497, Bacillaceae<br />

Oceanobacillus oncorhynchi subsp. incaldanensis, AJ640134, Bacillaceae<br />

Oceanobacillus oncorhynchi subsp. oncorhynchi, AB188089, Bacillaceae<br />

Oceanobacillus iheyensis, AB010863, Bacillaceae, type sp.<br />

Oceanobacillus picturae, AJ315060, Bacillaceae<br />

Virgibacillus carmonensis, AJ316302, Bacillaceae<br />

Virgibacillus necropolis, AJ315056, Bacillaceae<br />

Virgibacillus halodenitrificans, AY543169, Bacillaceae<br />

Virgibacillus marismortui, AJ009793, Bacillaceae<br />

Virgibacillus olivae, DQ139839, Bacillaceae<br />

Virgibacillus salexigens, Y11603, Bacillaceae<br />

Virgibacillus pantothenticus, D16275, Bacillaceae, type sp.<br />

Virgibacillus proomii, AJ012667, Bacillaceae<br />

Virgibacillus dokdonensis, AY822043, Bacillaceae<br />

Bacillus thermocloacae, Z26939, Bacillaceae<br />

Oceanobacillus chironomi, DQ298074, Bacillaceae<br />

Paucisalibacillus globulus, AM114102, Bacillaceae, type sp.<br />

Oceanobacillus profundus, DQ386635, Bacillaceae<br />

Ornithinibacillus californiensis, AF326365, Bacillaceae<br />

Ornithinibacillus bavariensis, Y13066, Bacillaceae, type sp.<br />

Cerasibacillus quisquiliarum, AB107894, Bacillaceae, type sp.<br />

Virgibacillus halophilus, AB243851, Bacillaceae<br />

Bacillus agaradhaerens, X76445, Bacillaceae<br />

Bacillus selenitireducens, AF064704, Bacillaceae<br />

Bacillus chagannorensis, AM492159, Bacillaceae<br />

Bacillus saliphilus, AJ493660, Bacillaceae<br />

Bacillus cellulosilyticus, AB043852, Bacillaceae<br />

Bacillus vedderi, Z48306, Bacillaceae<br />

Bacillus clarkii, X76444, Bacillaceae<br />

Marinococcus halophilus, X90835, Sporolactobacillaceae, type sp.

---

Marinococcus halotolerans, AY817493, Sporolactobacillaceae<br />

Sinococcus qinghaiensis, DQ168584, Sporolactobacillaceae, type sp.<br />

Bacillus qingdaonensis, DQ115802, Bacillaceae<br />

Bacillus salarius, AY667494, Bacillaceae<br />

Salsuginibacillus kocurii, AM492160, Bacillaceae, type sp.<br />

Bacillus horti, D87035, Bacillaceae<br />

Bacillus mannanilyticus, AB043864, Bacillaceae<br />

Pullulanibacillus naganoensis, AB021193, Unclassified Bacillales, type sp.<br />

Tuberibacillus calidus, AB231786, Sporolactobacillaceae, type sp.<br />

Bacillus taeanensis, AY603978, Bacillaceae<br />

Bacillus oshimensis, AB188090, Bacillaceae<br />

Bacillus lehensis, AY793550, Bacillaceae<br />

Bacillus clausii, X76440, Bacillaceae<br />

Bacillus patagoniensis, AY258614, Bacillaceae<br />

Bacillus gibsonii, X76446, Bacillaceae<br />

Bacillus murimartini, AJ316316, Bacillaceae<br />

Bacillus plakortidis, AJ880003, Bacillaceae<br />

Bacillus arseniciselenatis, AF064705, Bacillaceae<br />

Bacillus macyae, AY032601, Bacillaceae<br />

Vulcanibacillus modesticaldus, AM050346, Bacillaceae, type sp.<br />

Bacillus pseudofirmus, X76439, Bacillaceae<br />

Bacillus akibai, AB043858, Bacillaceae<br />

Bacillus krulwichiae, AB086897, Bacillaceae<br />

Bacillus okhensis, DQ026060, Bacillaceae<br />

Bacillus wakoensis, AB043851, Bacillaceae<br />

Bacillus alcalophilus, X76436, Bacillaceae<br />

Bacillus pseudalcaliphilus, X76449, Bacillaceae<br />

Bacillus bogoriensis, AY376312, Bacillaceae<br />

Bacillus hemicellulosilyticus, AB043846, Bacillaceae<br />

Bacillus halodurans, AJ302709, Bacillaceae<br />

Bacillus okuhidensis, AB047684, Bacillaceae<br />

Sporolactobacillaceae (5:0)<br />

Sporolactobacillus nakayamae subsp. nakayamae, AJ634663<br />

Sporolactobacillus nakayamae subsp. racemicus, AJ698860<br />

Sporolactobacillus laevolacticus, D16270<br />

Sporolactobacillus inulinus, AB101595, type sp.<br />

Sporolactobacillus terrae, AJ634662<br />

Bacillus arsenicus, AJ606700, Bacillaceae<br />

Bacillus barbaricus, AJ422145, Bacillaceae<br />

Bacillus gelatini, AJ551329, Bacillaceae<br />

Bacillus macauensis, AY373018, Bacillaceae<br />

Bacillus decolorationis, AJ315075, Bacillaceae<br />

Bacillus algicola, AY228462, Bacillaceae<br />

Bacillus hwajinpoensis, AF541966, Bacillaceae<br />

Exiguobacterium artemiae, AM072763, Bacillaceae<br />

Exiguobacterium undae, DQ019165, Bacillaceae<br />

Exiguobacterium oxidotolerans, AB105164, Bacillaceae<br />

Exiguobacterium antarcticum, DQ019164, Bacillaceae<br />

Exiguobacterium acetylicum, DQ019167, Bacillaceae<br />

Exiguobacterium indicum, AJ846291, Bacillaceae<br />

Exiguobacterium aestuarii, AY594264, Bacillaceae<br />

Exiguobacterium profundum, AY818050, Bacillaceae<br />

Exiguobacterium aurantiacum, DQ019166, Bacillaceae, type sp.<br />

Exiguobacterium mexicanum, AM072764, Bacillaceae<br />

Exiguobacterium marinum, AY594266, Bacillaceae<br />

Bacillus benzoevorans, X60611, Bacillaceae<br />

Bacillus circulans, AY043084, Bacillaceae<br />

Bacillus siralis, AF071856, Bacillaceae<br />

Bacillus fordii, AY443039, Bacillaceae<br />

Bacillus fortis, AY443038, Bacillaceae<br />

Bacillus farraginis, AY443036, Bacillaceae<br />

Bacillus galactosidilyticus, AJ535638, Bacillaceae<br />

Bacillus ruris, AJ535639, Bacillaceae<br />

Bacillus lentus, AB021189, Bacillaceae<br />

Bacillus badius, X77790, Bacillaceae<br />

Bacillus kribbensis, DQ280367, Bacillaceae<br />

Bacillus firmus, D16268, Bacillaceae<br />

Bacillus infantis, AY904032, Bacillaceae<br />

Bacillus asahii, AB109209, Bacillaceae<br />

Tenericutes (190:0)<br />

Mycoplasma adleri, U67943, Mycoplasmataceae<br />

Mycoplasma felifaucium, U15795, Mycoplasmataceae<br />

Mycoplasma leopharyngis, U16760, Mycoplasmataceae<br />

Mycoplasma maculosum, AF221116, Mycoplasmataceae<br />

Mycoplasma caviae, AF221111, Mycoplasmataceae<br />

Mycoplasma fermentans, M24289, Mycoplasmataceae<br />

Mycoplasma spermatophilum, AF221119, Mycoplasmataceae<br />

Mycoplasma lipofaciens, AF221115, Mycoplasmataceae<br />

Mycoplasma opalescens, AF221117, Mycoplasmataceae<br />

Mycoplasma agalactiae, M24290, Mycoplasmataceae<br />

Mycoplasma bovis, U02968, Mycoplasmataceae<br />

Mycoplasma primatum, AF221118, Mycoplasmataceae<br />

Mycoplasma columbinum, AF221113, Mycoplasmataceae<br />

Mycoplasma iners, AF221114, Mycoplasmataceae<br />

Mycoplasma columbinasale, AF221112, Mycoplasmataceae<br />

Mycoplasma meleagridis, L24106, Mycoplasmataceae<br />

Mycoplasma gallinarum, L24105, Mycoplasmataceae<br />

Mycoplasma californicum, M24582, Mycoplasmataceae<br />

Mycoplasma simbae, U16323, Mycoplasmataceae<br />

Mycoplasma bovigenitalium, M24291, Mycoplasmataceae<br />

Mycoplasma phocirhinis, AF304324, Mycoplasmataceae<br />

Mycoplasma hyopharyngis, U58997, Mycoplasmataceae<br />

Mycoplasma lipophilum, M24581, Mycoplasmataceae<br />

Mycoplasma canis, AF340023, Mycoplasmataceae<br />

Mycoplasma cynos, AF412978, Mycoplasmataceae<br />

Mycoplasma bovirhinis, U44766, Mycoplasmataceae<br />

Mycoplasma leonicaptivi, U16759, Mycoplasmataceae<br />

Mycoplasma felis, U09787, Mycoplasmataceae<br />

Mycoplasma mustelae, AF412986, Mycoplasmataceae<br />

Mycoplasma synoviae, X52083, Mycoplasmataceae

---

Mycoplasma corogypsi, L08054, Mycoplasmataceae<br />

Mycoplasma citelli, AF412973, Mycoplasmataceae<br />

Mycoplasma oxoniensis, AF412987, Mycoplasmataceae<br />

Mycoplasma columborale, AF412975, Mycoplasmataceae<br />

Mycoplasma sturni, U22013, Mycoplasmataceae<br />

Mycoplasma buteonis, AF412971, Mycoplasmataceae<br />

Mycoplasma gallopavonis, AF412980, Mycoplasmataceae<br />

Mycoplasma glycophilum, AF412981, Mycoplasmataceae<br />

Mycoplasma gallinaceum, L24104, Mycoplasmataceae<br />

Mycoplasma anatis, AF412970, Mycoplasmataceae<br />

Mycoplasma pullorum, U58504, Mycoplasmataceae<br />

Mycoplasma alligatoris, AF412969, Mycoplasmataceae<br />

Mycoplasma crocodyli, AF412977, Mycoplasmataceae<br />

Mycoplasma elephantis, AF221121, Mycoplasmataceae<br />

Mycoplasma equigenitalium, AF221120, Mycoplasmataceae<br />

Mycoplasma indiense, AF125593, Mycoplasmataceae<br />

Mycoplasma orale, AY796060, Mycoplasmataceae<br />

Mycoplasma hyosynoviae, U26730, Mycoplasmataceae<br />

Mycoplasma faucium, AF125590, Mycoplasmataceae<br />

Mycoplasma subdolum, AF125588, Mycoplasmataceae<br />

Mycoplasma buccale, AF125586, Mycoplasmataceae<br />

Mycoplasma salivarium, AF125583, Mycoplasmataceae<br />

Mycoplasma arthritidis, M24580, Mycoplasmataceae<br />

Mycoplasma equirhinis, AF125585, Mycoplasmataceae<br />

Mycoplasma hominis, AF443616, Mycoplasmataceae<br />

Mycoplasma phocidae, AF304325, Mycoplasmataceae<br />

Mycoplasma arginini, AF125581, Mycoplasmataceae<br />

Mycoplasma gateae, U15796, Mycoplasmataceae<br />

Mycoplasma canadense, U44769, Mycoplasmataceae<br />

Mycoplasma alkalescens, U44764, Mycoplasmataceae<br />

Mycoplasma auris, U67944, Mycoplasmataceae<br />

Mycoplasma phocicerebrale, AF304323, Mycoplasmataceae<br />

Mycoplasma falconis, AF125591, Mycoplasmataceae<br />

Mycoplasma spumans, AF125587, Mycoplasmataceae<br />

Mycoplasma cloacale, AF125592, Mycoplasmataceae<br />

Mycoplasma anseris, AF125584, Mycoplasmataceae<br />

Mycoplasma gypis, AF125589, Mycoplasmataceae<br />

Mycoplasma agassizii, U09786, Mycoplasmataceae<br />

Mycoplasma testudineum, U19768, Mycoplasmataceae<br />

Mycoplasma pulmonis, AF125582, Mycoplasmataceae<br />

Mycoplasma dispar, AF412979, Mycoplasmataceae<br />

Mycoplasma ovipneumoniae, U44771, Mycoplasmataceae<br />

Mycoplasma flocculare, X62699, Mycoplasmataceae<br />

Mycoplasma bovoculi, U44768, Mycoplasmataceae<br />

Mycoplasma conjunctivae, U44770, Mycoplasmataceae<br />

Mycoplasma hyorhinis, AF412982, Mycoplasmataceae<br />

Mycoplasma collis, AF538681, Mycoplasmataceae<br />

Mycoplasma cricetuli, AF412976, Mycoplasmataceae<br />

Mycoplasma neurolyticum, M23944, Mycoplasmataceae<br />

Mycoplasma lagogenitalium, AF412983, Mycoplasmataceae<br />

Mycoplasma molare, AF538683, Mycoplasmataceae<br />

Mycoplasma iguanae, AY714305, Mycoplasmataceae<br />

Mycoplasma mobile, M24480, Mycoplasmataceae<br />

Mycoplasma moatsii, AF412984, Mycoplasmataceae<br />

Mycoplasma sualvi, AF412988, Mycoplasmataceae<br />

Ureaplasma felinum, D78651, Mycoplasmataceae<br />

Ureaplasma cati, D78649, Mycoplasmataceae<br />

Ureaplasma canigenitalium, D78648, Mycoplasmataceae<br />

Ureaplasma diversum, D78650, Mycoplasmataceae<br />

Ureaplasma parvum , AF073456, Mycoplasmataceae<br />

Ureaplasma urealyticum , AF073450, Mycoplasmataceae, type sp.<br />

Ureaplasma gallorale, U62937, Mycoplasmataceae<br />

Mycoplasma iowae, M24293, Mycoplasmataceae<br />

Mycoplasma muris, M23939, Mycoplasmataceae<br />

Mycoplasma penetrans, L10839, Mycoplasmataceae<br />

Mycoplasma microti, AF212859, Mycoplasmataceae<br />

Mycoplasma amphoriforme, AY531655, Mycoplasmataceae<br />

Mycoplasma testudinis, U09788, Mycoplasmataceae<br />

Mycoplasma imitans, L24103, Mycoplasmataceae<br />

Mycoplasma pirum, M23940, Mycoplasmataceae<br />

Mycoplasma alvi, U44765, Mycoplasmataceae<br />

Mycoplasma genitalium, X77334, Mycoplasmataceae<br />

Mycoplasma pneumoniae, AF132740, Mycoplasmataceae<br />

Mycoplasma cavipharyngis, AF125879, Mycoplasmataceae<br />

Mycoplasma fastidiosum, AF125878, Mycoplasmataceae<br />

Entomoplasma lucivorax, AF547212, Entomoplasmataceae<br />

Entomoplasma luminosum, AY155670, Entomoplasmataceae<br />

Acholeplasma multilocale, AY538169, Acholeplasmataceae<br />

Entomoplasma freundtii, AF036954, Entomoplasmataceae<br />

Entomoplasma somnilux, AY157871, Entomoplasmataceae<br />

Mesoplasma seiffertii, AY351331, Entomoplasmataceae<br />

Mesoplasma syrphidae, AY231458, Entomoplasmataceae<br />

Mesoplasma photuris, AY177627, Entomoplasmataceae<br />

Mycoplasma capricolum subsp. capripneumoniae, M94728, Mycoplasmataceae<br />

Mycoplasma capricolum subsp. capricolum, U26046, Mycoplasmataceae<br />

Mycoplasma mycoides subsp. capri, U26037, Mycoplasmataceae<br />

Mycoplasma cottewii, U67945, Mycoplasmataceae<br />

Mycoplasma yeatsii, U67946, Mycoplasmataceae<br />

Mycoplasma putrefaciens, U26055, Mycoplasmataceae<br />

Mesoplasma florum, AF300327, Entomoplasmataceae, type sp.<br />

Mesoplasma tabanidae, AY187288, Entomoplasmataceae<br />

Mesoplasma entomophilum, AF305693, Entomoplasmataceae<br />

Mesoplasma grammopterae, AY174170, Entomoplasmataceae<br />

Mesoplasma chauliocola, AY166704, Entomoplasmataceae<br />

Mesoplasma corruscae, AY168929, Entomoplasmataceae<br />

Mesoplasma lactucae , AF303132, Entomoplasmataceae<br />

Spiroplasma diminutum, AY189130, Spiroplasmataceae<br />

Spiroplasma floricola, AY189131, Spiroplasmataceae<br />

Spiroplasma gladiatoris, M24475, Spiroplasmataceae<br />

Spiroplasma helicoides, AY189132, Spiroplasmataceae<br />

Spiroplasma chinense, AY189126, Spiroplasmataceae<br />

Spiroplasma velocicrescens, AY189311, Spiroplasmataceae

---

Spiroplasma velocicrescens, AY189311, Spiroplasmataceae<br />

Spiroplasma culicicola, AY189129, Spiroplasmataceae<br />

Spiroplasma corruscae, AY189128, Spiroplasmataceae<br />

Spiroplasma turonicum, AY189310, Spiroplasmataceae<br />

Spiroplasma litorale, AY189306, Spiroplasmataceae<br />

Spiroplasma montanense, AY189307, Spiroplasmataceae<br />

Spiroplasma lampyridicola, AY189134, Spiroplasmataceae<br />

Spiroplasma leptinotarsae, AY189305, Spiroplasmataceae<br />

Spiroplasma alleghenense, AY189125, Spiroplasmataceae<br />

Spiroplasma sabaudiense, AY189308, Spiroplasmataceae<br />

Spiroplasmataceae (8:0)<br />

Spiroplasma citri, X63781, type sp.<br />

Spiroplasma melliferum, AY325304<br />

Spiroplasma phoeniceum, AY772395<br />

Spiroplasma insolitum, AY189133<br />

Spiroplasma penaei, AY771927<br />

Spiroplasma poulsonii, M24483<br />

Spiroplasma chrysopicola, AY189127<br />

Spiroplasma syrphidicola, AY189309<br />

Acholeplasmataceae (15:0)<br />

Acholeplasma laidlawii, U14905, type sp.<br />

Acholeplasma pleciae, AY257485<br />

Acholeplasma granularum, AY538166<br />

Acholeplasma oculi, U14904<br />

Acholeplasma equifetale, AY538165<br />

Acholeplasma hippikon, AY538167<br />

Acholeplasma cavigenitalium, AY538164<br />

Acholeplasma modicum, M23933<br />

Acholeplasma axanthum, AF412968<br />

Acholeplasma palmae, L33734<br />

Acholeplasma parvum, AY538170<br />

Mycoplasma feliminutum, U16758, Mycoplasmataceae<br />

Acholeplasma morum, AY538168<br />

Acholeplasma vituli, AF031479<br />

Acholeplasma brassicae, AY538163<br />

Anaeroplasmataceae (3:0)<br />

Anaeroplasma bactoclasticum, M25049<br />

Anaeroplasma varium, M23934<br />

Anaeroplasma abactoclasticum, M25050, type sp.<br />

Erysipelotrichaceae (13:0)<br />

<strong>All</strong>obaculum stercoricanis, AJ417075, type sp.<br />

Eubacterium biforme, M59230, Eubacteriaceae<br />

Eubacterium cylindroides, L34617, Eubacteriaceae<br />

Streptococcus pleomorphus, M23730, Streptococcaceae<br />

Eubacterium dolichum, L34682, Eubacteriaceae<br />

Eubacterium tortuosum, L34683, Eubacteriaceae<br />

Clostridium innocuum, M23732, Clostridiaceae<br />

Bulleidia extructa, AF220064, type sp.<br />

Solobacterium moorei, AB031056, type sp.<br />

Holdemania filiformis, Y11466, type sp.<br />

Erysipelothrix rhusiopathiae, AB034200, type sp.<br />

Erysipelothrix tonsillarum, AB055906<br />

Erysipelothrix inopinata, AJ550617<br />

Asteroleplasma anaerobium, M22351, Anaeroplasmataceae, type sp.<br />

Clostridium cocleatum, Y18188, Clostridiaceae<br />

Clostridium spiroforme, X75908, Clostridiaceae<br />

Clostridium saccharogumia, DQ100445, Clostridiaceae<br />

Clostridium ramosum, X73440, Clostridiaceae<br />

Lactobacillus catenaformis, AJ621549, Lactobacillaceae<br />

Lactobacillus vitulinus, AB210825, Lactobacillaceae<br />

Catenibacterium mitsuokai, AB030224, Erysipelotrichaceae, type sp.<br />

Coprobacillus cateniformis, AB030219, Erysipelotrichaceae, type sp.<br />

Turicibacter sanguinis, AF349724, Erysipelotrichaceae, type sp.<br />

Bacillus funiculus, AB049195, Bacillaceae<br />

Bacillus panaciterrae, AB245380, Bacillaceae<br />

Bacillus flexus, AB021185, Bacillaceae<br />

Bacillus megaterium, D16273, Bacillaceae<br />

Bacillus halmapalus, X76447, Bacillaceae<br />

Bacillus horikoshii, AB043865, Bacillaceae<br />

Bacillus cohnii, X76437, Bacillaceae<br />

Bacillus luciferensis, AJ419629, Bacillaceae<br />

Bacillus acidiceler, DQ374637, Bacillaceae<br />

Bacillus fastidiosus, X60615, Bacillaceae<br />

Bacillus litoralis, AY608605, Bacillaceae<br />

Bacillus niabensis, AY998119, Bacillaceae<br />

Bacillus indicus, AJ583158, Bacillaceae<br />

Bacillus cibi, AY550276, Bacillaceae<br />

Bacillus idriensis, AY904033, Bacillaceae<br />

Bacillus humi, AJ627210, Bacillaceae<br />

Bacillus herbersteinensis, AJ781029, Bacillaceae<br />

Bacillus simplex, AJ439078, Bacillaceae<br />

Bacillus muralis, AJ316309, Bacillaceae<br />

Brevibacterium frigoritolerans, AM747813, Bacillaceae<br />

Bacillus psychrosaccharolyticus, AB021195, Bacillaceae<br />

Bacillus novalis, AJ542512, Bacillaceae<br />

Bacillus vireti, AJ542509, Bacillaceae<br />

Bacillus drentensis, AJ542506, Bacillaceae<br />

Bacillus bataviensis, AJ542508, Bacillaceae<br />

Bacillus soli, AJ542513, Bacillaceae<br />

Bacillus fumarioli, AJ250056, Bacillaceae<br />

Bacillus niacini, AB021194, Bacillaceae<br />

Bacillus pocheonensis, AB245377, Bacillaceae<br />

Bacillus boroniphilus, AB198719, Bacillaceae<br />

Bacillus selenatarsenatis, AB262082, Bacillaceae<br />

Bacillus jeotgali, AF221061, Bacillaceae<br />

Bacillus thioparans, DQ371431, Bacillaceae<br />

Bacillus foraminis, AJ717382, Bacillaceae

---

Bacillus foraminis, AJ717382, Bacillaceae<br />

Bacillus infernus, U20385, Bacillaceae<br />

Bacillus methanolicus, AB112727, Bacillaceae<br />

Bacillus aeolius, AJ504797, Bacillaceae<br />

Bacillus alveayuensis, AY605232, Bacillaceae<br />

Geobacillus pallidus, Z26930, Bacillaceae<br />

Bacillus thermoamylovorans, L27478, Bacillaceae<br />

Anoxybacillus gonensis, AY122325, Bacillaceae<br />

Anoxybacillus kestanbolensis, AY248711, Bacillaceae<br />

Anoxybacillus ayderensis, AF001963, Bacillaceae<br />

Anoxybacillus kamchatkensis, AF510985, Bacillaceae<br />

Anoxybacillus flavithermus, Z26932, Bacillaceae<br />

Anoxybacillus pushchinoensis, AJ010478, Bacillaceae, type sp.<br />

Anoxybacillus contaminans, AJ551330, Bacillaceae<br />

Anoxybacillus voinovskiensis, AB110008, Bacillaceae<br />

Anoxybacillus amylolyticus, AJ618979, Bacillaceae<br />

Geobacillus tepidamans, AY563003, Bacillaceae<br />

Geobacillus kaustophilus, X60618, Bacillaceae<br />

Geobacillus lituanicus, AY044055, Bacillaceae<br />

Geobacillus thermoleovorans, Z26923, Bacillaceae<br />

Geobacillus vulcani, AJ293805, Bacillaceae<br />

Geobacillus stearothermophilus, AB021196, Bacillaceae, type sp.<br />

Geobacillus thermocatenulatus, AY608935, Bacillaceae<br />

Geobacillus jurassicus, AY312404, Bacillaceae<br />

Geobacillus uzenensis, AF276304, Bacillaceae<br />

Geobacillus subterraneus, AF276306, Bacillaceae<br />

Geobacillus thermodenitrificans, AY608961, Bacillaceae<br />

Geobacillus debilis, AJ564616, Bacillaceae<br />

Geobacillus toebii, AF326278, Bacillaceae<br />

Geobacillus thermoglucosidasius, AY608981, Bacillaceae<br />

Geobacillus caldoxylosilyticus, AF067651, Bacillaceae<br />

Saccharococcus thermophilus, L09227, Bacillaceae, type sp.<br />

Aneurinibacillus aneurinilyticus, X94194, Paenibacillaceae, type sp.<br />

Aneurinibacillus migulanus, X94195, Paenibacillaceae<br />

Aneurinibacillus danicus, AB112725, Paenibacillaceae<br />

Aneurinibacillus terranovensis, AJ715385, Paenibacillaceae<br />

Aneurinibacillus thermoaerophilus, X94196, Paenibacillaceae<br />

Paenibacillaceae (103:0)<br />

Paenibacillus macerans, AB073196<br />

Paenibacillus sanguinis, AY323609<br />

Paenibacillus barengoltzii, AY167814<br />

Paenibacillus timonensis, AY323612<br />

Paenibacillus motobuensis, AY741810<br />

Paenibacillus turicensis, AF378694<br />

Paenibacillus nematophilus, AF480935<br />

Paenibacillus fonticola, DQ453131<br />

Paenibacillus anaericanus, AJ318909<br />

Paenibacillus ginsengisoli, AB245382<br />

Paenibacillus cineris, AJ575658<br />

Paenibacillus rhizosphaerae, AY751754<br />

Paenibacillus favisporus, AY208751<br />

Paenibacillus azoreducens, AJ272249<br />

Paenibacillus chibensis, AB073194<br />

Paenibacillus cookii, AJ250317<br />

Paenibacillus sabinae, DQ338444<br />

Paenibacillus zanthoxyli, DQ471303<br />

Paenibacillus durus, X77846<br />

Paenibacillus stellifer, AJ316013<br />

Paenibacillus graminis, AJ223987<br />

Paenibacillus antarcticus, AJ605292<br />

Paenibacillus macquariensis, X60625<br />

Paenibacillus wynnii, AJ633647<br />

Paenibacillus odorifer, AJ223990<br />

Paenibacillus borealis, AJ011322<br />

Paenibacillus barcinonensis, AJ716019<br />

Paenibacillus illinoisensis, AB073192<br />

Paenibacillus xylanilyticus, AY427832<br />

Paenibacillus pabuli, AB045094<br />

Paenibacillus amylolyticus, D85396<br />

Paenibacillus massiliensis, AY323608<br />

Paenibacillus panacisoli, AB245384<br />

Paenibacillus kribbensis, AF391123<br />

Paenibacillus peoriae, AJ320494<br />

Paenibacillus jamilae, AJ271157<br />

Paenibacillus polymyxa, D16276, type sp.<br />

Paenibacillus brasilensis, AF273740<br />

Paenibacillus terrae, AF391124<br />

Paenibacillus glucanolyticus, AB073189<br />

Paenibacillus lautus, AB073188<br />

Paenibacillus lactis, AY257868<br />

Paenibacillus campinasensis, AF021924<br />

Paenibacillus naphthalenovorans, AF353681<br />

Paenibacillus validus, AB073203<br />

Paenibacillus soli, DQ309072<br />

Bacillus edaphicus, AF006076, Bacillaceae<br />

Bacillus mucilaginosus, AF006077, Bacillaceae<br />

Paenibacillus chinjuensis, AF164345<br />

Paenibacillus ehimensis, AY116665<br />

Paenibacillus koreensis, AF130254<br />

Paenibacillus elgii, AY090110<br />

Paenibacillus alginolyticus, AB073362<br />

Paenibacillus chondroitinus, D82064<br />

Paenibacillus chitinolyticus, AB045100<br />

Paenibacillus gansuensis, AY839866<br />

Paenibacillus ginsengarvi, AB271057<br />

Paenibacillus hodogayensis, AB179866<br />

Paenibacillus koleovorans, AB041720<br />

Paenibacillus larvae, AY530294<br />

Paenibacillus curdlanolyticus, AB073202<br />

Paenibacillus cellulosilyticus, DQ407282<br />

Paenibacillus kobensis, AB073363<br />

Paenibacillus mendelii, AF537343

---

Paenibacillus mendelii, AF537343<br />

Paenibacillus sepulcri, DQ291142<br />

Paenibacillus humicus, AM411528<br />

Paenibacillus pasadenensis, AY167820<br />

<strong>The</strong>rmobacillus composti, AB254031<br />

<strong>The</strong>rmobacillus xylanilyticus, AJ005795, type sp.<br />

Paenibacillus phyllosphaerae, AY598818<br />

Paenibacillus glycanilyticus, AB042938<br />

Paenibacillus xinjiangensis, AY839868<br />

Paenibacillus agarexedens, AJ345020<br />

Paenibacillus alkaliterrae, AY960748<br />

Paenibacillus terrigena, AB248087<br />

Paenibacillus daejeonensis, AF290916<br />

Paenibacillus alvei, AJ320491<br />

Paenibacillus apiarius, AB073201<br />

Paenibacillus assamensis, AY884046<br />

Paenibacillus taiwanensis, DQ890521<br />

Paenibacillus lentimorbus, AB073199<br />

Paenibacillus popilliae, AB073198<br />

Paenibacillus thiaminolyticus, AB073197<br />

Paenibacillus dendritiformis, AY359885<br />

Paenibacillus agaridevorans, AJ345023<br />

Paenibacillus granivorans, AF237682<br />

Cohnella hongkongensis, AF433165<br />

Cohnella thermotolerans, AJ971483, type sp.<br />

Cohnella laeviribosi, DQ459874<br />

Brevibacillus centrosporus, D78458<br />

Brevibacillus choshinensis, AB112713<br />

Brevibacillus reuszeri, AB112715<br />

Brevibacillus brevis, AB271756, type sp.<br />

Brevibacillus formosus, AB112712<br />

Brevibacillus agri, AB112716<br />

Brevibacillus parabrevis, AB112714<br />

Brevibacillus limnophilus, AB112717<br />

Brevibacillus invocatus, AF378232<br />

Brevibacillus borstelensis, AB112721<br />

Brevibacillus ginsengisoli, AB245376<br />

Brevibacillus laterosporus, D16271<br />

Brevibacillus levickii, AJ715378<br />

Brevibacillus thermoruber, Z26921<br />

Ammoniphilus oxalaticus, Y14578, Paenibacillaceae, type sp.<br />

Ammoniphilus oxalivorans, Y14580, Paenibacillaceae<br />

Oxalophagus oxalicus, Y14581, Paenibacillaceae, type sp.<br />

<strong>The</strong>rmoactinomycetaceae (12:0)<br />

Laceyella putida, AF138736<br />

Laceyella sacchari, AJ251779<br />

<strong>The</strong>rmoactinomyces intermedius, AF138734<br />

<strong>The</strong>rmoactinomyces vulgaris, AF138739, type sp.<br />

Mechercharimyces asporophorigenens, AB239532<br />

Mechercharimyces mesophilus, AB239529, type sp.<br />

Seinonella peptonophila, AF138735, type sp.<br />

Shimazuella kribbensis, AB049939, type sp.<br />

<strong>The</strong>rmoflavimicrobium dichotomicum, AF138733, type sp.<br />

Planifilum fulgidum, AB088362<br />

Planifilum yunnanense, DQ119659<br />

Planifilum fimeticola, AB088364, type sp.<br />

Caldalkalibacillus thermarum, AY753654, Bacillaceae, type sp.<br />

Bacillus schlegelii, AB042060, Bacillaceae<br />

<strong>The</strong>rmicanus aegyptius, AJ242495, Paenibacillaceae, type sp.<br />

Alicyclobacillaceae (18:0)<br />

Alicyclobacillus hesperidum, AJ133633<br />

Alicyclobacillus sacchari, AB264020<br />

Alicyclobacillus acidiphilus, AB076660<br />

Alicyclobacillus acidoterrestris, AB042057<br />

Alicyclobacillus fastidiosus, AB264021<br />

Alicyclobacillus acidocaldarius subsp. rittmannii, AB059674<br />

Alicyclobacillus sendaiensis, AB084128<br />

Alicyclobacillus acidocaldarius subsp. acidocaldarius, AJ496806, type sp.<br />

Alicyclobacillus vulcanalis, AY425985<br />

Alicyclobacillus contaminans, AB264026<br />

Alicyclobacillus pomorum, AB089840<br />

Alicyclobacillus cycloheptanicus, AB042059<br />

Alicyclobacillus macrosporangiidus, AB264025<br />

Alicyclobacillus disulfidooxidans, AB089843<br />

Alicyclobacillus tolerans, Z21979<br />

Alicyclobacillus kakegawensis, AB264022<br />

Alicyclobacillus shizuokensis, AB264024<br />

Alicyclobacillus herbarius, AB042055<br />

Bacillus tusciae, AB042062, Bacillaceae<br />

Veillonellaceae (59:0)<br />

Selenomonas flueggei, AF287803<br />

Selenomonas noxia, AF287799<br />

Selenomonas infelix, AF287802<br />

Selenomonas dianae, AF287801<br />

Centipeda periodontii, AJ010963, type sp.<br />

Schwartzia succinivorans, Y09434, type sp.<br />

Selenomonas sputigena, AF287793, type sp.<br />

Mitsuokella jalaludinii, AF479674<br />

Mitsuokella multacida, X81878, type sp.<br />

Selenomonas ruminantium subsp. lactilytica, AB003379<br />

Selenomonas ruminantium subsp. ruminantium, M62702<br />

Anaerovibrio lipolyticus, AB034191, type sp.<br />

Pectinatus haikarae, DQ223731<br />

Pectinatus portalensis, AY428574<br />

Megamonas hypermegale, AJ420107, type sp.<br />

Propionispira arboris, Y18190, type sp.<br />

Zymophilus raffinosivorans, DQ217599, type sp.<br />

Sporomusa acidovorans, AJ279798

---

Sporomusa sphaeroides, AJ279801, type sp.<br />

Sporomusa malonica, AJ279799<br />

Sporomusa ovata, AJ279800<br />

Sporomusa silvacetica, Y09976<br />

Sporomusa aerivorans, AJ506191<br />

Sporomusa rhizae, AM158322<br />

Pelosinus fermentans, DQ145536, type sp.<br />

Sporotalea propionica, AM258975, type sp.<br />

Acetonema longum, AJ010964, type sp.<br />

Propionispora hippei, AJ508927<br />

Propionispora vibrioides, AJ279802, type sp.<br />

Anaerosinus glycerini, AJ010960, type sp.<br />

Dendrosporobacter quercicolus, AJ010962, type sp.<br />

Anaeromusa acidaminophila, AF071415, type sp.<br />

Anaeroarcus burkinensis, AJ010961, type sp.<br />

Megasphaera paucivorans, DQ223730<br />

Megasphaera sueciensis, DQ223729<br />

Megasphaera cerevisiae, L37040<br />

Megasphaera elsdenii, U95027, type sp.<br />

Anaeroglobus geminatus, AF338413, type sp.<br />

Megasphaera micronuciformis, AF473834<br />

<strong>All</strong>isonella histaminiformans, AF548373, type sp.<br />

Dialister pneumosintes, X82500, type sp.<br />

Dialister invisus, AY162469<br />

Dialister propionicifaciens, AY850119<br />

Dialister micraerophilus, AF473837<br />

Veillonella denticariosi, EF185167<br />

Veillonella rodentium, AY514996<br />

Veillonella atypica, AF439641<br />

Veillonella alcalescens, AY995769<br />

Veillonella parvula, AY995767, type sp.<br />

Veillonella dispar, AF439639<br />

Veillonella caviae, AY355140<br />

Veillonella montpellierensis, AF473836<br />

Veillonella criceti, AF186072<br />

Veillonella ratti, AY355138<br />

Acidaminococcus fermentans, X78017, type sp.<br />

Acidaminococcus intestini, AF473835<br />

Phascolarctobacterium faecium, X72865, type sp.<br />

Succiniclasticum ruminis, X81137, type sp.<br />

Succinispira mobilis, AJ006980, type sp.<br />

Desulfosporosinus auripigmenti, AJ493051, Peptococcaceae<br />

Desulfosporosinus meridiei, AF076527, Peptococcaceae<br />

Desulfosporosinus lacus, AJ582757, Peptococcaceae<br />

Desulfosporosinus orientis, Y11570, Peptococcaceae, type sp.<br />

Desulfitobacterium chlororespirans, U68528, Peptococcaceae<br />

Desulfitobacterium hafniense, X94975, Peptococcaceae<br />

Desulfitobacterium dehalogenans, L28946, Peptococcaceae, type sp.<br />

Desulfitobacterium metallireducens, AF297871, Peptococcaceae<br />

Dehalobacter restrictus, U84497, Peptococcaceae, type sp.<br />

Heliobacteriaceae (8:0)<br />

Heliobacterium gestii, AB100837<br />

Heliobacterium modesticaldum, AB100836<br />

Heliobacterium sulfidophilum, AF249678<br />

Heliobacterium undosum, AF249679<br />

Heliobacillus mobilis, AB100835, type sp.<br />

Heliobacterium chlorum, M11212, type sp.<br />

Heliorestis baculata, AF249680<br />

Heliorestis daurensis, AF079102, type sp.<br />

Peptococcaceae (2:0)<br />

Desulfonispora thiosulfatigenes, Y18214, type sp.<br />

Peptococcus niger, X55797, type sp.<br />

<strong>The</strong>rmolithobacteria (2:0)<br />

<strong>The</strong>rmolithobacter carboxydivorans, DQ095862<br />

<strong>The</strong>rmolithobacter ferrireducens, AF282253, type sp.<br />

<strong>The</strong>rmincola carboxydiphila, AY603000, Peptococcaceae, type sp.<br />

<strong>The</strong>rmincola ferriacetica, AY631277, Peptococcaceae<br />

Carboxydocella sporoproducens, AY673988, Syntrophomonadaceae<br />

Carboxydocella thermautotrophica, AY061974, Syntrophomonadaceae, type sp.<br />

Desulfotomaculum australicum, M96665, Peptococcaceae<br />

Desulfotomaculum thermocisternum, U33455, Peptococcaceae<br />

Desulfovirgula thermocuniculi, DQ208689, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

Desulfotomaculum kuznetsovii, Y11569, Peptococcaceae<br />

Desulfotomaculum solfataricum, AY084078, Peptococcaceae<br />

Desulfotomaculum thermosubterraneum, DQ208688, Peptococcaceae<br />

Desulfotomaculum thermobenzoicum subsp. thermobenzoicum, AJ294429, Peptococcaceae<br />

Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum, AY007190, Peptococcaceae<br />

Desulfotomaculum thermoacetoxidans, Y11573, Peptococcaceae<br />

Desulfurispora thermophila, AY548776, Peptococcaceae, type sp.<br />

Cryptanaerobacter phenolicus, AY327251, Peptococcaceae, type sp.<br />

Pelotomaculum schinkii, X91170, Peptococcaceae<br />

Pelotomaculum isophthalicicum, AB232785, Peptococcaceae<br />

Pelotomaculum terephthalicicum, AB091323, Peptococcaceae<br />

Pelotomaculum propionicicum, AB154390, Peptococcaceae<br />

Pelotomaculum thermopropionicum, AB035723, Peptococcaceae, type sp.<br />

Sporotomaculum hydroxybenzoicum, Y14845, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

Sporotomaculum syntrophicum, AB076610, <strong>The</strong>rmoanaerobacteriaceae<br />

Desulfotomaculum sapomandens, AF168365, Peptococcaceae<br />

Desulfotomaculum thermosapovorans, Z26315, Peptococcaceae<br />

Desulfotomaculum gibsoniae, Y11576, Peptococcaceae<br />

Desulfotomaculum arcticum, DQ148942, Peptococcaceae<br />

Desulfotomaculum geothermicum, AJ294428, Peptococcaceae<br />

Desulfotomaculum carboxydivorans, AY961415, Peptococcaceae<br />

Desulfotomaculum nigrificans, X62176, Peptococcaceae, type sp.<br />

Desulfotomaculum putei, AF053929, Peptococcaceae<br />

Desulfotomaculum aeronauticum, X98407, Peptococcaceae<br />

Desulfotomaculum ruminis, Y11572, Peptococcaceae

---

Desulfotomaculum acetoxidans, Y11566, Peptococcaceae<br />

Desulfotomaculum alkaliphilum, AF097024, Peptococcaceae<br />

Desulfotomaculum halophilum, U88891, Peptococcaceae<br />

Clostridia (323:0)<br />

Clostridium sphenoides, AB075772, Clostridiaceae<br />

Desulfotomaculum guttoideum, Y11568, Clostridiaceae<br />

Clostridium celerecrescens, X71848, Clostridiaceae<br />

Clostridium indolis, Y18184, Clostridiaceae<br />

Clostridium methoxybenzovorans, AF067965, Clostridiaceae<br />

Clostridium saccharolyticum, Y18185, Clostridiaceae<br />

Clostridium amygdalinum, AY353957, Clostridiaceae<br />

Clostridium aerotolerans, X76163, Clostridiaceae<br />

Clostridium xylanolyticum, X76739, Clostridiaceae<br />

Clostridium algidixylanolyticum, AF092549, Clostridiaceae<br />

Bacteroides xylanolyticus, DQ497992, Clostridiaceae<br />

Clostridium hathewayi, AJ311620, Clostridiaceae<br />

Clostridium aldenense, DQ279736, Clostridiaceae<br />

Clostridium citroniae, DQ279737, Clostridiaceae<br />

Clostridium clostridioforme, M59089, Clostridiaceae<br />

Clostridium bolteae, AJ508452, Clostridiaceae<br />

Clostridium asparagiforme, AJ582080, Clostridiaceae<br />

Clostridium symbiosum, M59112, Clostridiaceae<br />

Moryella indoligenes, DQ377947, Lachnospiraceae, type sp.<br />

Oribacterium sinus, AY323228, Lachnospiraceae, type sp.<br />

Ruminococcus obeum, X85101, Ruminococcaceae<br />

Ruminococcus luti, AJ133124, Ruminococcaceae<br />

Ruminococcus schinkii, X94965, Ruminococcaceae<br />

Ruminococcus productus, L76595, Ruminococcaceae<br />

Ruminococcus hydrogenotrophicus, X95624, Ruminococcaceae<br />

Lactonifactor longoviformis, DQ100449, Clostridiaceae<br />

Eubacterium cellulosolvens, X71860, Eubacteriaceae<br />

Syntrophococcus sucromutans, AF202264, Lachnospiraceae, type sp.<br />

Bryantella formatexigens, AJ505973, Clostridiaceae, type sp.<br />

Parasporobacterium paucivorans, AJ272036, Clostridiaceae, type sp.<br />

Sporobacterium olearium, AF116854, Lachnospiraceae, type sp.<br />

Clostridium hylemonae, AB023973, Clostridiaceae<br />

Clostridium scindens, AF262238, Clostridiaceae<br />

Dorea formicigenerans, L34619, Clostridiaceae, type sp.<br />

Dorea longicatena, AJ132842, Clostridiaceae<br />

Ruminococcus lactaris, L76602, Ruminococcaceae<br />

Clostridium glycyrrhizinilyticum, AB233029, Clostridiaceae<br />

Ruminococcus torques, L76604, Ruminococcaceae<br />

Clostridium nexile, X73443, Clostridiaceae<br />

Coprococcus comes, EF031542, Lachnospiraceae<br />

Hespellia porcina, AF445239, Clostridiaceae<br />

Hespellia stercorisuis, AF445264, Clostridiaceae, type sp.<br />

Ruminococcus gnavus, X94967, Ruminococcaceae<br />

Roseburia inulinivorans, AJ270473, Lachnospiraceae<br />

Eubacterium rectale, L34627, Eubacteriaceae<br />

Roseburia faecis, AY305310, Lachnospiraceae<br />

Roseburia intestinalis, AJ312385, Lachnospiraceae<br />

Roseburia hominis, AJ270482, Lachnospiraceae<br />

Shuttleworthia satelles, AF399956, Lachnospiraceae, type sp.<br />

Pseudobutyrivibrio ruminis, X95893, Lachnospiraceae, type sp.<br />

Pseudobutyrivibrio xylanivorans, AJ428548, Lachnospiraceae<br />

Bacteroides galacturonicus, DQ497994, Bacteroidaceae<br />

Eubacterium eligens, L34420, Eubacteriaceae<br />

Howardella ureilytica, DQ925472, Unclassified Clostridiales, type sp.<br />

Lachnobacterium bovis, AF298663, Lachnospiraceae<br />

Eubacterium ventriosum, L34421, Eubacteriaceae<br />

Clostridium neopropionicum, X76746, Clostridiaceae<br />

Clostridium propionicum, X77841, Clostridiaceae<br />

Clostridium lactatifermentans, AY033434, Clostridiaceae<br />

Clostridium colinum, X76748, Clostridiaceae<br />

Clostridium lentocellum, X71851, Clostridiaceae<br />

Anaerosporobacter mobilis, AY534872, Clostridiaceae, type sp.<br />

Eubacterium xylanophilum, L34628, Eubacteriaceae<br />

Clostridium herbivorans, L34418, Clostridiaceae<br />

Clostridium polysaccharolyticum, X77839, Clostridiaceae<br />

Clostridium populeti, X71853, Clostridiaceae<br />

Clostridium jejuense, AY494606, Clostridiaceae<br />

Clostridium xylanovorans, AF116920, Clostridiaceae<br />

Clostridium aminovalericum, X73436, Clostridiaceae<br />

Coprococcus eutactus, EF031543, Lachnospiraceae, type sp.<br />

Eubacterium ruminantium, AB008552, Eubacteriaceae<br />

Eubacterium hallii, L34621, Eubacteriaceae<br />

Clostridium fimetarium, AF126687, Clostridiaceae<br />

Anaerostipes caccae, AJ270487, Lachnospiraceae, type sp.<br />

Coprococcus catus, AB038359, Lachnospiraceae<br />

Bacteroides pectinophilus, DQ497993, Bacteroidaceae<br />

Catonella morbi, X87151, Lachnospiraceae, type sp.<br />

Butyrivibrio hungatei, AJ428553, Lachnospiraceae<br />

Clostridium proteoclasticum, U37378, Clostridiaceae<br />

Butyrivibrio fibrisolvens, U41172, Lachnospiraceae, type sp.<br />

Clostridium aminophilum, L04165, Clostridiaceae<br />

Johnsonella ignava, X87152, Lachnospiraceae, type sp.<br />

Acetitomaculum ruminis, M59083, Lachnospiraceae, type sp.<br />

Ruminococcaceae (38:0)<br />

Clostridium leptum, AJ305238, Clostridiaceae<br />

Clostridium sporosphaeroides, X66002, Clostridiaceae<br />

Ruminococcus bromii, L76600<br />

Clostridium cellulosi, L09177, Clostridiaceae<br />

Ethanoligenens harbinense, AY295777, Clostridiaceae, type sp.<br />

Anaerofilum agile, X98011<br />

Anaerofilum pentosovorans, X97852, type sp.<br />

Faecalibacterium prausnitzii, AJ413954, type sp.<br />

Subdoligranulum variabile, AJ518869, type sp.<br />

Acetanaerobacterium elongatum, AY487928, type sp.<br />

Anaerotruncus colihominis, AJ315980, type sp.<br />

Eubacterium siraeum, L34625, Eubacteriaceae

---

Ruminococcus callidus, L76596<br />

Ruminococcus flavefaciens, L76603, type sp.<br />

Ruminococcus albus, L76598<br />

Clostridium methylpentosum, Y18181, Clostridiaceae<br />

Clostridium orbiscindens, Y18187, Clostridiaceae<br />

Eubacterium plautii, AY724678, Eubacteriaceae<br />

Bacteroides capillosus, AY136666, Bacteroidaceae<br />

Clostridium viride, X81125, Clostridiaceae<br />

Oscillibacter valericigenes, AB238598, Oscilospiraceae, type sp.<br />

Papillibacter cinnamivorans, AF167711, type sp.<br />

Sporobacter termitidis, Z49863, type sp.<br />

Eubacterium desmolans, L34618, Eubacteriaceae<br />

Clostridium cellulolyticum, X71847, Clostridiaceae<br />

Clostridium papyrosolvens, X71852, Clostridiaceae<br />

Clostridium cellobioparum, X71856, Clostridiaceae<br />

Clostridium thermosuccinogenes, Y18180, Clostridiaceae<br />

Bacteroides cellulosolvens, L35517, Bacteroidaceae<br />

Acetivibrio cellulolyticus, L35516, type sp.<br />

Clostridium aldrichii, X71846, Clostridiaceae<br />

Clostridium alkalicellulosi, AY959944, Clostridiaceae<br />

Clostridium straminisolvens, AB125279, Clostridiaceae<br />

Clostridium thermocellum , CP000568, Clostridiaceae<br />

Fastidiosipila sanguinis, AJ575187, type sp.<br />

Clostridium stercorarium subsp. stercorarium, AJ310082, Clostridiaceae<br />

Clostridium stercorarium subsp. leptospartum, AF266461, Clostridiaceae<br />

Clostridium stercorarium subsp. thermolacticum, X72870, Clostridiaceae<br />

<strong>The</strong>rmoanaerobacterium thermosulfurigenes, L09171, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

<strong>The</strong>rmoanaerobacterium xylanolyticum, L09172, <strong>The</strong>rmoanaerobacteriaceae<br />

<strong>The</strong>rmoanaerobacterium saccharolyticum, L09169, <strong>The</strong>rmoanaerobacteriaceae<br />

<strong>The</strong>rmoanaerobacterium aciditolerans, AY350594, <strong>The</strong>rmoanaerobacteriaceae<br />

<strong>The</strong>rmoanaerobacterium aotearoense, X93359, <strong>The</strong>rmoanaerobacteriaceae<br />

<strong>The</strong>rmoanaerobacterium polysaccharolyticum, U40229, <strong>The</strong>rmoanaerobacteriaceae<br />

<strong>The</strong>rmoanaerobacterium zeae, U75993, <strong>The</strong>rmoanaerobacteriaceae<br />

Mahella australiensis, AY331143, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

Clostridiaceae (86:0)<br />

Clostridium chauvoei, U51843<br />

Clostridium septicum, U59278<br />

Clostridium isatidis, X98395<br />

Clostridium sartagoforme, Y18175<br />

Clostridium tertium, Y18174<br />

Clostridium carnis, M59091<br />

Clostridium celatum, X77844<br />

Clostridium disporicum, Y18176<br />

Clostridium quinii, X76745<br />

Clostridium gasigenes, AF092548<br />

Clostridium aurantibutyricum, X68183<br />

Clostridium chartatabidum, X71850<br />

Clostridium paraputrificum, X75907<br />

Clostridium vincentii, X97432<br />

Eubacterium multiforme, AB018184, Eubacteriaceae<br />

Eubacterium nitritogenes, AB018185, Eubacteriaceae<br />

Eubacterium budayi, AB018183, Eubacteriaceae<br />

Clostridium baratii, X68174<br />

Clostridium sardiniense, AB161367<br />

Clostridium colicanis, AJ420008<br />

Clostridium diolis, AJ458418<br />

Clostridium roseum, Y18171<br />

Clostridium beijerinckii, X68179<br />

Clostridium butyricum, AJ458420, type sp.<br />

Clostridium puniceum, X71857<br />

Clostridium saccharoperbutylacetonicum, U16122<br />

Clostridium saccharobutylicum, U16147<br />

Clostridium uliginosum, AJ276992<br />

Sarcina maxima, X76650<br />

Sarcina ventriculi, X76649, type sp.<br />

Clostridium frigidicarnis, AF069742<br />

Clostridium perfringens , CP000246<br />

Anaerobacter polyendosporus, Y18189, type sp.<br />

Clostridium intestinale, X76740<br />

Clostridium algidicarnis, AF127023<br />

Clostridium putrefaciens, AF127024<br />

Clostridium fallax, M59088<br />

Clostridium cellulovorans, X71849<br />

Clostridium haemolyticum, AB037910<br />

Clostridium novyi, AB045606<br />

Clostridium thermopalmarium, X72869<br />

Clostridium thermobutyricum, X72868<br />

Clostridium homopropionicum, X76744<br />

Clostridium aestuarii, DQ126679<br />

Clostridium grantii, X75272<br />

Clostridium ganghwense, AY903294<br />

Clostridium pascui, X96736<br />

Clostridium peptidivorans, AF156796<br />

Clostridium estertheticum subsp. laramiense, AJ506115<br />

Clostridium frigoris, AJ506116<br />

Clostridium estertheticum subsp. estertheticum, S46734<br />

Clostridium lacusfryxellense, AJ506118<br />

Clostridium psychrophilum, AJ297443<br />

Clostridium bowmanii, AJ506119<br />

Clostridium argentinense, X68316<br />

Clostridium schirmacherense, AM114453<br />

Clostridium subterminale, AF241844<br />

Clostridium thiosulfatireducens, AY024332<br />

Clostridium magnum, X77835<br />

Clostridium tyrobutyricum, M59113<br />

Clostridium drakei, Y18813<br />

Clostridium aciditolerans, DQ114945<br />

Clostridium nitrophenolicum, AM261414<br />

Clostridium acidisoli, AJ237756<br />

Clostridium akagii, AJ237755<br />

Clostridium acetobutylicum , AE001437

---

Clostridium acetobutylicum , AE001437<br />

Clostridium felsineum, AF270501<br />

Clostridium collagenovorans, X73439<br />

Clostridium lundense, AY858804<br />

Clostridium tetanomorphum, DQ241819<br />

Clostridium cochlearium, M59093<br />

Clostridium tetani, X74770<br />

Clostridium acetireducens, X79862<br />

Clostridium botulinum , L37585<br />

Eubacterium combesii, AY533380, Eubacteriaceae<br />

Clostridium sporogenes, X68189<br />

Clostridium putrificum, X73442<br />

Clostridium proteolyticum, X73448<br />

Caloramator indicus, X75788<br />

<strong>The</strong>rmobrachium celere, X99238, type sp.<br />

Caloramator proteoclasticus, X90488<br />

Caloramator coolhaasii, AF104215<br />

Caloramator fervidus, L09187, type sp.<br />

Caloramator viterbiensis, AF181848<br />

Clostridium cylindrosporum, Y18179<br />

Oxobacter pfennigii, X77838, type sp.<br />

Gracilibacter thermotolerans, DQ117465, Gracilibacteraceae, type sp.<br />

Peptostreptococcaceae (18:0)<br />

Peptostreptococcus anaerobius, AY326462, type sp.<br />

Peptostreptococcus stomatis, DQ160208<br />

Clostridium hiranonis, AB023970, Clostridiaceae<br />

Clostridium difficile, AB075770, Clostridiaceae<br />

Clostridium irregulare, X73447, Clostridiaceae<br />

Clostridium bartlettii, AY438672, Clostridiaceae<br />

Clostridium glycolicum, X76750, Clostridiaceae<br />

Clostridium lituseburense, M59107, Clostridiaceae<br />

Clostridium bifermentans, AB075769, Clostridiaceae<br />

Clostridium sordellii, AB075771, Clostridiaceae<br />

Tepidibacter formicigenes, AY245527, Clostridiaceae<br />

Tepidibacter thalassicus, AY158079, Clostridiaceae, type sp.<br />

Clostridium paradoxum, Z69929, Clostridiaceae<br />

Sporacetigenium mesophilum, AY682207, Clostridiaceae, type sp.<br />

Eubacterium yurii subsp. schtitka, AY533382, Eubacteriaceae<br />

Eubacterium yurii subsp. margaretiae, AY533381, Eubacteriaceae<br />

Filifactor villosus, AF537211, type sp.<br />

Clostridium sticklandii, M26494, Clostridiaceae<br />

Clostridium litorale, X77845, Clostridiaceae<br />

Eubacterium acidaminophilum, AF071416, Eubacteriaceae<br />

Clostridium aceticum, Y18183, Clostridiaceae<br />

Clostridium formicaceticum, X77836, Clostridiaceae<br />

Anaerovirgula multivorans, AB201750, Unclassified Clostridiales, type sp.<br />

Natronincola histidinovorans, Y16716, Clostridiaceae, type sp.<br />

Tindallia californiensis, AF373919, Clostridiaceae<br />

Tindallia magadiensis, Y15626, Clostridiaceae, type sp.<br />

Anoxynatronum sibiricum, AF522323, Clostridiaceae, type sp.<br />

Alkaliphilus crotonatoxidans, AF467248, Clostridiaceae<br />

Alkaliphilus transvaalensis, AB037677, Clostridiaceae, type sp.<br />

Clostridium caminithermale, AF458779, Clostridiaceae<br />

Clostridium halophilum, X77837, Clostridiaceae<br />

Caminicella sporogenes, AJ320233, Clostridiaceae, type sp.<br />

Geosporobacter subterraneus, DQ643978, Clostridiaceae, type sp.<br />

Eubacterium minutum, U13037, Eubacteriaceae<br />

Eubacterium nodatum, Z36274, Eubacteriaceae<br />

Eubacterium pyruvativorans, AJ310135, Eubacteriaceae<br />

Eubacterium infirmum, U13039, Eubacteriaceae<br />

Eubacterium sulci, AJ006963, Eubacteriaceae<br />

Mogibacterium diversum, AB037874, Eubacteriaceae<br />

Mogibacterium neglectum, AB037875, Eubacteriaceae<br />

Mogibacterium vescum, AB021702, Eubacteriaceae<br />

Mogibacterium pumilum, AB021701, Eubacteriaceae, type sp.<br />

Mogibacterium timidum, Z36296, Eubacteriaceae<br />

Eubacterium brachy, Z36272, Eubacteriaceae<br />

Eubacterium saphenum, U65987, Eubacteriaceae<br />

Anaerovorax odorimutans, AJ251215, Eubacteriaceae, type sp.<br />

Acidaminobacter hydrogenoformans, AF016691, Clostridiaceae, type sp.<br />

Guggenheimella bovis, AY272039, Clostridiaceae, type sp.<br />

Fusibacter paucivorans, AF050099, Peptostreptococcaceae, type sp.<br />

Eubacterium angustum, L34612, Eubacteriaceae<br />

Anaerococcus prevotii, AF542232, Peptostreptococcaceae, type sp.<br />

Anaerococcus tetradius, AF542234, Peptostreptococcaceae<br />

Anaerococcus octavius, Y07841, Peptostreptococcaceae<br />

Anaerococcus lactolyticus, AF542233, Peptostreptococcaceae<br />

Anaerococcus hydrogenalis, D14140, Peptostreptococcaceae<br />

Anaerococcus vaginalis, AF542229, Peptostreptococcaceae<br />

Helcococcus kunzii, X69837, Peptostreptococcaceae, type sp.<br />

Helcococcus ovis, Y16279, Peptostreptococcaceae<br />

Helcococcus sueciensis, AJ579914, Peptostreptococcaceae<br />

Finegoldia magna, AF542227, Peptostreptococcaceae, type sp.<br />

Gallicola barnesae, AB038361, Peptostreptococcaceae, type sp.<br />

Parvimonas micra, AY323523, Peptostreptococcaceae, type sp.<br />

Peptoniphilus asaccharolyticus, AF542228, Peptostreptococcaceae, type sp.<br />

Peptoniphilus indolicus, AY153431, Peptostreptococcaceae<br />

Peptoniphilus harei, Y07839, Peptostreptococcaceae<br />

Peptoniphilus lacrimalis, AF542230, Peptostreptococcaceae<br />

Peptoniphilus ivorii, Y07840, Peptostreptococcaceae<br />

Tissierella praeacuta, X80832, Peptostreptococcaceae, type sp.<br />

Tissierella creatinophila, X80227, Peptostreptococcaceae<br />

Soehngenia saccharolytica, AY353956, Clostridiaceae, type sp.<br />

Clostridium ultunense, Z69293, Clostridiaceae<br />

Tepidimicrobium ferriphilum, AY656718, Clostridiaceae, type sp.<br />

Sporanaerobacter acetigenes, AF358114, Peptostreptococcaceae, type sp.<br />

Sedimentibacter hydroxybenzoicus, L11305, Peptostreptococcaceae, type sp.<br />

Sedimentibacter saalensis, AJ404680, Peptostreptococcaceae<br />

Dethiosulfatibacter aminovorans, AB218661, Unclassified Clostridiales, type sp.<br />

Caloranaerobacter azorensis, AJ272422, Clostridiaceae, type sp.<br />

<strong>The</strong>rmohalobacter berrensis, AF113543, Clostridiaceae, type sp.

---

<strong>The</strong>rmohalobacter berrensis, AF113543, Clostridiaceae, type sp.<br />

Garciella nitratireducens, AY176772, Clostridiaceae, type sp.<br />

Eubacteriaceae (15:0)<br />

Acetobacterium paludosum, X96958<br />

Acetobacterium tundrae, AJ297449<br />

Acetobacterium bakii, X96960<br />

Acetobacterium fimetarium, X96959<br />

Acetobacterium carbinolicum, X96956<br />

Acetobacterium malicum, X96957<br />

Acetobacterium woodii, X96954, type sp.<br />

Acetobacterium wieringae, X96955<br />

Eubacterium callanderi, X96961<br />

Eubacterium limosum, M59120, type sp.<br />

Eubacterium aggregans, AF073898<br />

Eubacterium barkeri, M23927<br />

Pseudoramibacter alactolyticus, AB036759, type sp.<br />

Anaerofustis stercorihominis, AJ518871, type sp.<br />

Alkalibacter saccharofermentans, AY312403, type sp.<br />

Anaerobranca californiensis, AY064217, Syntrophomonadaceae<br />

Anaerobranca gottschalkii, AF203703, Syntrophomonadaceae<br />

Syntrophomonas cellicola, DQ288691, Syntrophomonadaceae<br />

Syntrophomonas wolfei subsp. saponavida, DQ666175, Syntrophomonadaceae<br />

Syntrophomonas zehnderi, DQ898277, Syntrophomonadaceae<br />

Pelospora glutarica, AJ251214, Syntrophomonadaceae, type sp.<br />

Syntrophomonas palmitatica, AB274039, Syntrophomonadaceae<br />

Syntrophomonas sapovorans, AF022249, Syntrophomonadaceae<br />

Syntrophomonas curvata, AY290767, Syntrophomonadaceae<br />

Syntrophomonas erecta, AY536889, Syntrophomonadaceae<br />

<strong>The</strong>rmosyntropha lipolytica, X99980, Syntrophomonadaceae, type sp.<br />

Syntrophothermus lipocalidus, AB021305, Syntrophomonadaceae, type sp.<br />

Desulfitibacter alkalitolerans, AY538171, Unclassified Clostridia, type sp.<br />

Natranaerobius thermophilus, DQ417202, Natranaerobiaceae, type sp.<br />

Moorella glycerini, U82327, <strong>The</strong>rmoanaerobacteriaceae<br />

Moorella mulderi, AF487538, <strong>The</strong>rmoanaerobacteriaceae<br />

Moorella thermoautotrophica, L09168, <strong>The</strong>rmoanaerobacteriaceae<br />

Moorella thermoacetica, AY656675, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

Sulfobacillus sibiricus, AY079150, Alicyclobacillaceae<br />

Sulfobacillus thermosulfidooxidans, AB089844, Alicyclobacillaceae, type sp.<br />

Sulfobacillus thermotolerans, DQ124681, Alicyclobacillaceae<br />

Sulfobacillus acidophilus, AB089842, Alicyclobacillaceae<br />

Symbiobacterium thermophilum , AP006840, Unclassified Lactobacillales, type sp.<br />

Gelria glutamica, AF321086, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

Carboxydothermus ferrireducens, U76363, Peptococcaceae<br />

<strong>The</strong>rmacetogenium phaeum, AB020336, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

<strong>The</strong>rmoanaerobacteriaceae (20:0)<br />

<strong>The</strong>rmoanaerobacter sulfurophilus, Y16940<br />

<strong>The</strong>rmoanaerobacter wiegelii, X92513<br />

<strong>The</strong>rmoanaerobacter siderophilus, AF120479<br />

<strong>The</strong>rmoanaerobacter acetoethylicus, L09163<br />

<strong>The</strong>rmoanaerobacter ethanolicus, L09162, type sp.<br />

<strong>The</strong>rmoanaerobacter thermohydrosulfuricus, L09161<br />

<strong>The</strong>rmoanaerobacter kivui, L09160<br />

<strong>The</strong>rmoanaerobacter brockii subsp. finnii, L09166<br />

<strong>The</strong>rmoanaerobacter brockii subsp. brockii, L09165<br />

<strong>The</strong>rmoanaerobacter brockii subsp. lactiethylicus, U14330<br />

<strong>The</strong>rmoanaerobacter pseudethanolicus, L09164<br />

<strong>The</strong>rmoanaerobacter mathranii subsp. alimentarius, AY701758<br />

<strong>The</strong>rmoanaerobacter mathranii subsp. mathranii, Y11279<br />

<strong>The</strong>rmoanaerobacter italicus, AJ250846<br />

<strong>The</strong>rmoanaerobacter thermocopriae, L09167<br />

<strong>The</strong>rmoanaerobacter sulfurigignens, AF234164<br />

Carboxydibrachium pacificum, AF174484, type sp.<br />

Caldanaerobacter subterraneus subsp. tengcongensis, AE012979<br />

Caldanaerobacter subterraneus subsp. yonseiensis, AF212925<br />

<strong>The</strong>rmanaeromonas toyohensis, AB062280, type sp.<br />

<strong>The</strong>rmosediminibacter litoriperuensis, AY703479, <strong>The</strong>rmoanaerobacteriaceae<br />

<strong>The</strong>rmosediminibacter oceani, AY703478, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

Tepidanaerobacter syntrophicus, AB106353, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

<strong>The</strong>rmovenabulum ferriorganovorum, AY033493, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

Dictyoglomus thermophilum, X69194, Dictyoglomi, type sp.<br />

Caldicellulosiruptor acetigenus, AY772476, Syntrophomonadaceae<br />

Caldicellulosiruptor kristjanssonii, AJ004811, Syntrophomonadaceae<br />

Caldicellulosiruptor lactoaceticus, X82842, Syntrophomonadaceae<br />

Caldicellulosiruptor owensensis, U80596, Syntrophomonadaceae<br />

Caldicellulosiruptor saccharolyticus, L09178, Syntrophomonadaceae, type sp.<br />

Actinobacteria (1766:0)<br />

Streptomycetaceae (514:0)<br />

Streptomyces durhamensis, AY999785<br />

Streptomyces filipinensis, AB184198<br />

Streptomyces echinatus, AJ399465<br />

Streptomyces niveiscabiei, AF361786<br />

Streptomyces puniciscabiei, AF361785<br />

Streptomyces griseofuscus, AB184206<br />

Streptomyces murinus, AB184155<br />

Streptomyces costaricanus, AB249939<br />

Streptomyces lanatus, AB184845<br />

Streptomyces yokosukanensis, DQ026652<br />

Streptomyces cellostaticus, AY999742<br />

Streptomyces lucensis, DQ442522<br />

Streptomyces niveoruber, DQ445796<br />

Streptomyces achromogenes subsp. achromogenes, AB184109<br />

Streptomyces capoamus, AB045877<br />

Streptomyces regensis, DQ026649<br />

Streptomyces bungoensis, AB184696<br />

Streptomyces galbus, X79852<br />

Streptomyces longwoodensis, AB184580<br />

Streptomyces canarius, AB184396

---

Streptomyces olivaceoviridis, AB184288<br />

Streptomyces corchorusii, AB184267<br />

Streptomyces cinereoruber subsp. cinereoruber, AY999771<br />

Streptomyces hirsutus, DQ442506<br />

Streptomyces violaceorectus, AB184314<br />

Streptomyces bikiniensis, X79851<br />

Streptomyces vietnamensis, DQ311081<br />

Streptomyces nashvillensis, AB184286<br />

Streptomyces showdoensis, AB184389<br />

Streptomyces roseoviridis, AB184239<br />

Streptomyces viridobrunneus, AJ781372<br />

Streptomyces laurentii, AJ781342<br />

Streptomyces filamentosus, AB184130<br />

Streptomyces roseolus, AB184168<br />

Streptomyces roseofulvus, AB184327<br />

Streptomyces termitum, AB184302<br />

Streptomyces curacoi, AB184841<br />

Streptomyces longisporus, AJ399475<br />

Streptomyces avermitilis , BA000030<br />

Streptomyces kunmingensis, DQ442513<br />

Streptomyces cinnabarinus, AB184266<br />

Streptomyces antibioticus, AY999776<br />

Streptomyces griseoruber, AB184209<br />

Streptomyces lincolnensis, AB184279<br />

Streptomyces canus, AY999775<br />

Streptomyces ciscaucasicus, AB184208<br />

Streptomyces griseorubiginosus, AJ781339<br />

Streptomyces phaeopurpureus, DQ026666<br />

Streptomyces mirabilis, AB184412<br />

Streptomyces olivochromogenes, AY094370<br />

Streptomyces pseudovenezuelae, AB184233<br />

Streptomyces cinereus, AB184072<br />

Streptomyces flaveus, DQ026643<br />

Streptomyces vastus, DQ442552<br />

Streptomyces novaecaesareae, AB184357<br />

Streptomyces aureocirculatus, AY999861<br />

Streptomyces bobili, AB184328<br />

Streptomyces galilaeus, AB045878<br />

Streptomyces flavovariabilis, EF178691<br />

Streptomyces prunicolor, DQ026659<br />

Streptomyces alboniger, AY845349<br />

Streptomyces chartreusis, AB184839<br />

Streptomyces griseoluteus, AY999751<br />

Streptomyces recifensis, AB184165<br />

Streptomyces seoulensis, AB249970<br />

Streptomyces cyaneus, AF346475<br />

Streptomyces acidiscabies, D63865<br />

Streptomyces phaeofaciens, AB184360<br />

Streptomyces puniceus, DQ442542<br />

Streptomyces rishiriensis, EF178682<br />

Streptomyces cinereoruber subsp. fructofermentans, AY999758<br />

Streptomyces hygroscopicus subsp. ossamyceticus, AB184560<br />

Streptomyces ipomoeae, AB184857<br />

Streptomyces torulosus, AJ781367<br />

Streptomyces neyagawaensis, D63869<br />

Streptomyces diastatochromogenes, D63867<br />

Streptomyces europaeiscabiei, AY207598<br />

Streptomyces scabiei, D63862<br />

Streptomyces aureus, AY094368<br />

Streptomyces kanamyceticus, DQ442511<br />

Streptomyces durmitorensis, DQ067287<br />

Streptomyces rectiviolaceus, DQ026660<br />

Streptomyces tauricus, AB045879<br />

Streptomyces ederensis, AY999824<br />

Streptomyces umbrinus, AB184305<br />

Streptomyces phaeochromogenes, AB184738<br />

Streptomyces aurantiacus, AJ781383<br />

Streptomyces glomeroaurantiacus, AB249983<br />

Streptomyces bottropensis, AB184262<br />

Streptomyces stelliscabiei, AJ007429<br />

Streptomyces cacaoi subsp. asoensis, DQ026644<br />

Streptomyces humidus, DQ442508<br />

Streptomyces reticuliscabiei, AJ007428<br />

Streptomyces turgidiscabies, AB026221<br />

Streptomyces laceyi, AB249944<br />

Streptomyces beijiangensis, AF385681<br />

Streptomyces drozdowiczii, AB249957<br />

Streptomyces atratus, DQ026638<br />

Streptomyces yanii, AB006159<br />

Streptomyces sanglieri, AB249945<br />

Streptomyces gelaticus, DQ026636<br />

Streptomyces pulveraceus, AB184806<br />

Streptomyces cirratus, AY999794<br />

Streptomyces xanthophaeus, DQ442560<br />

Streptomyces vinaceus, AB184394<br />

Streptomyces spororaveus, AJ781370<br />

Streptomyces nojiriensis, AJ781355<br />

Streptomyces avidinii, AB184395<br />

Streptomyces subrutilus, X80825<br />

Streptomyces colombiensis, DQ026646<br />

Streptomyces goshikiensis, EF178693<br />

Streptomyces sporoverrucosus, DQ442544<br />

Streptomyces lavendulae subsp. grasserius, AY999841<br />

Streptomyces cinnamonensis, AB184707<br />

Streptomyces virginiae, AB184175<br />

Streptomyces globosus, AJ781330<br />

Streptomyces toxytricini, DQ442548<br />

Streptomyces flavotricini, AY999915<br />

Streptomyces polychromogenes, AB184292<br />

Streptomyces racemochromogenes, DQ026656<br />

Streptomyces katrae, AB184409<br />

Streptomyces litmocidini, AB184149

---

Streptomyces yerevanensis, EF178684<br />

Streptomyces narbonensis, DQ445794<br />

Streptomyces omiyaensis, EF178697<br />

Streptomyces wedmorensis, DQ442557<br />

Streptomyces zaomyceticus, EF178685<br />

Streptomyces exfoliatus, AB184324<br />

Streptomyces venezuelae, AB045890<br />

Streptomyces lateritius, AJ781326<br />

Streptomyces clavuligerus, AY999718<br />

Streptomyces albidochromogenes, AB249953<br />

Streptomyces flavidovirens, AB184270<br />

Streptomyces enissocaesilis, AB249930<br />

Streptomyces chryseus, AY999787<br />

Streptomyces helvaticus, AB184367<br />

Streptomyces albosporeus subsp. labilomyceticus, AB184638<br />

Streptomyces crystallinus, AB184652<br />

Streptomyces peucetius, AB045887<br />

Streptomyces xantholiticus, AB184349<br />

Streptomyces kurssanovii, AB184325<br />

Streptomyces graminofaciens, AB184416<br />

Streptomyces cremeus, AY999744<br />

Streptomyces spiroverticillatus, AB184814<br />

Streptomyces atroolivaceus, AJ781320<br />

Streptomyces olivoviridis, AB184227<br />

Streptomyces clavifer, DQ026670<br />

Streptomyces mutomycini, AB249951<br />

Streptomyces finlayi, AY999788<br />

Streptomyces candidus, DQ026663<br />

Streptomyces californicus, AB184755<br />

Streptomyces floridae, AB184656<br />

Streptomyces celluloflavus, AB184476<br />

Streptomyces griseobrunneus, AB249912<br />

Streptomyces albolongus, AB184425<br />

Streptomyces cavourensis subsp. cavourensis, DQ445791<br />

Streptomyces bacillaris, AB184439<br />

Streptomyces parvus, DQ442537<br />

Streptomyces badius, AY999783<br />

Streptomyces sindenensis, AB184759<br />

Streptomyces mediolani, AB184674<br />

Streptomyces tanashiensis, AY999856<br />

Streptomyces rubiginosohelvolus, AB184240<br />

Streptomyces griseinus, AB184205<br />

Streptomyces globisporus subsp. globisporus, EF178686<br />

Streptomyces albovinaceus, AB249958<br />

Streptomyces pluricolorescens, DQ442540<br />

Streptomyces alboviridis, AB184256<br />

Streptomyces fulvorobeus, AB184711<br />

Streptomyces microflavus, DQ445795<br />

Streptomyces luridiscabiei, AF361784<br />

Streptomyces griseus subsp. griseus, AY207604<br />

Streptomyces cyaneofuscatus, AB184860<br />

Streptomyces lavendulae subsp. lavendulae, AB184080<br />

Streptomyces cavourensis subsp. washingtonensis, DQ026671<br />

Streptomyces flavogriseus, AJ494864<br />

Streptomyces flavovirens, DQ026635<br />

Streptomyces nitrosporeus, EF178680<br />

Streptomyces griseolus, AB184768<br />

Streptomyces halstedii, EF178695<br />

Streptomyces cinereorectus, AB184646<br />

Streptomyces chrysomallus subsp. chrysomallus, AB184120<br />

Streptomyces praecox, AB184293<br />

Streptomyces anulatus, DQ026637<br />

Streptomyces acrimycini, AY999889<br />

Streptomyces griseoplanus, AY999894<br />

Streptomyces flavofuscus, AB249935<br />

Streptomyces baarnensis, AB184615<br />

Streptomyces fimicarius, AY999784<br />

Streptomyces sannanensis, AB184579<br />

Streptomyces melanogenes, AB184222<br />

Streptomyces noboritoensis, AB184287<br />

Streptomyces mauvecolor, AB184532<br />

Streptomyces michiganensis, AB184153<br />

Streptomyces xanthochromogenes, DQ442559<br />

Streptomyces amakusaensis, AY999781<br />

Streptomyces inusitatus, AB184445<br />

Streptomyces roseolilacinus, AB184167<br />

Streptomyces gobitricini, AB184666<br />

Streptomyces luridus, DQ442523<br />

Streptomyces lavendofoliae, AJ781336<br />

Streptomyces werraensis, DQ442558<br />

Streptomyces globisporus subsp. caucasicus, EF178676<br />

Streptomyces eurocidicus, AY999790<br />

Streptomyces stramineus, AB184720<br />

Streptomyces netropsis, EF178671<br />

Actinomadura glauciflava, AB184612, <strong>The</strong>rmomonosporaceae<br />

Streptomyces olivoverticillatus, AB184636<br />

Streptomyces cinnamoneus, AB184850<br />

Streptomyces pseudoechinosporeus, AB184100<br />

Streptomyces alanosinicus, AB184442<br />

Streptomyces lilacinus, AB184819<br />

Streptomyces luteosporeus, DQ442525<br />

Streptomyces ardus, AB184864<br />

Streptomyces blastmyceticus, AY999802<br />

Streptomyces hiroshimensis, AB184789<br />

Streptomyces caeruleus, EF178675<br />

Streptomyces abikoensis, AY999834<br />

Streptomyces hygroscopicus subsp. angustmyceticus, DQ442509<br />

Streptomyces griseocarneus, X99943<br />

Streptomyces varsoviensis, DQ026653<br />

Streptomyces luteireticuli, AB249969<br />

Streptomyces thioluteus, AB184753<br />

Streptomyces morookaense, AJ781349

---

Streptomyces morookaense, AJ781349<br />

Streptoverticillium reticulum subsp. protomycicum, AB184551<br />

Streptomyces lavenduligriseus, DQ442515<br />

Streptomyces orinoci, AB184866<br />

Streptomyces kasugaensis, AB024441<br />

Streptoverticillium verticillium subsp. quintum, AB184822<br />

Streptomyces mashuensis, X79323<br />

Streptomyces mobaraensis, DQ442528<br />

Streptomyces althioticus, AY999808<br />

Streptomyces matensis, AB184221<br />

Streptomyces heliomycini, AB184712<br />

Streptomyces griseorubens, AB184139<br />

Streptomyces labedae, AB184704<br />

Streptomyces erythrogriseus, AJ781328<br />

Streptomyces griseoincarnatus, AJ781321<br />

Streptomyces variabilis, DQ442551<br />

Streptomyces griseoflavus, AJ781322<br />

Streptomyces albaduncus, AY999757<br />

Streptomyces griseoloalbus, AB184275<br />

Streptomyces malachitofuscus, AB184282<br />

Streptomyces collinus, AB184123<br />

Streptomyces paradoxus, AB184628<br />

Streptomyces violaceochromogenes, AY999867<br />

Streptomyces ambofaciens, AB184182<br />

Streptomyces glaucescens, AB184843<br />

Streptomyces pharetrae, AY699792<br />

Streptomyces viridochromogenes, DQ442555<br />

Streptomyces flavofungini, AB184359<br />

Streptomyces fulvissimus, AB184787<br />

Streptomyces spectabilis, AB184393<br />

Streptomyces alboflavus, EF178699<br />

Streptomyces variegatus, AJ781371<br />

Streptomyces diastaticus subsp. diastaticus, AB184785<br />

Streptomyces gougerotii, AB184742<br />

Streptomyces rutgersensis subsp. rutgersensis, AB184170<br />

Streptomyces intermedius, AB184277<br />

Streptomyces aureoverticillatus, AY999774<br />

Streptomyces griseoaurantiacus, AB184676<br />

Streptomyces jietaisiensis, AY314783<br />

Streptomyces scopiformis, AF184081<br />

Streptomyces flaveolus, AB184764<br />

Streptomyces misionensis, EF178678<br />

Streptomyces anthocyanicus, AB184631<br />

Streptomyces tricolor, AB184687<br />

Streptomyces humiferus, AF503491<br />

Streptomyces coelescens, AF503496<br />

Streptomyces violaceoruber, AF503492<br />

Streptomyces violaceolatus, AF503497<br />

Streptomyces diastaticus subsp. ardesiacus, DQ026631<br />

Streptomyces fragilis, AY999917<br />

Streptomyces coelicoflavus, AB184650<br />

Streptomyces lienomycini, AJ781353<br />

Streptomyces albogriseolus, AY177662<br />

Streptomyces chattanoogensis, AY295791<br />

Streptomyces violaceorubidus, AJ781374<br />

Streptomyces rubrogriseus, AB184681<br />

Streptomyces tendae, D63873<br />

Streptomyces achromogenes subsp. rubradiris, AY999846<br />

Streptomyces nodosus, AF114033<br />

Streptomyces eurythermus, D63870<br />

Streptomyces geysiriensis, DQ442501<br />

Streptomyces ghanaensis, AY999851<br />

Streptomyces minutiscleroticus, EF178696<br />

Streptomyces rochei, AB184237<br />

Streptomyces vinaceusdrappus, AY999929<br />

Streptomyces plicatus, AY999922<br />

Streptomyces mutabilis, EF178679<br />

Streptomyces anandii, AB184402<br />

Streptomyces viridiviolaceus, AY999854<br />

Streptomyces fumanus, AB184273<br />

Streptomyces lavendulocolor, DQ442516<br />

Streptomyces azureus, EF178674<br />

Streptomyces djakartensis, AB184657<br />

Streptomyces caelestis, X80824<br />

Streptomyces levis, AB184670<br />

Streptomyces cellulosae, DQ442495<br />

Streptomyces gancidicus, AB184660<br />

Streptomyces pseudogriseolus, DQ442541<br />

Streptomyces rubiginosus, AY999810<br />

Streptomyces capillispiralis, AB184577<br />

Streptomyces africanus, AY208912<br />

Streptomyces afghaniensis, AB184847<br />

Streptomyces tuirus, AB184690<br />

Streptomyces flavoviridis, AB184842<br />

Streptomyces pilosus, AB184161<br />

Streptomyces atrovirens, DQ026672<br />

Streptomyces carpinensis, AB184574<br />

Streptomyces fimbriatus, AY999844<br />

Streptomyces griseomycini, AB184137<br />

Streptomyces griseostramineus, AB184140<br />

Streptomyces graminearus, AJ781333<br />

Streptomyces thermospinosisporus, AF333113<br />

Streptomyces viridosporus, DQ442556<br />

Streptomyces glaucus, AB184665<br />

Streptomyces aurantiogriseus, AB184188<br />

Streptomyces thermodiastaticus, AB018095<br />

Streptomyces brasiliensis, AB249981<br />

Streptomyces asterosporus, AB184706<br />

Streptomyces aureorectus, AB184710<br />

Streptomyces calvus, AB184329<br />

Streptomyces virens, DQ442554<br />

Streptomyces champavatii, DQ026642

---

Streptomyces sampsonii, D63871<br />

Streptomyces odorifer, Z76682<br />

Streptomyces albidoflavus, AB184255<br />

Streptomyces daghestanicus, DQ442497<br />

Streptomyces coelicolor, AB184196<br />

Streptomyces felleus, AB184129<br />

Streptomyces canescens, AB184117<br />

Streptomyces limosus, AB184147<br />

Streptomyces hydrogenans, AB184868<br />

Streptomyces griseus subsp. solvifaciens, AB249915<br />

Streptomyces violascens, AY999737<br />

Streptomyces resistomycificus, AJ399472<br />

Streptomyces griseochromogenes, AJ399491<br />

Streptomyces koyangensis, AY079156<br />

Streptomyces bambergiensis, AB184869<br />

Streptomyces prasinus, DQ026658<br />

Streptomyces cyanoalbus, AB184882<br />

Streptomyces emeiensis, DQ462649<br />

Streptomyces prasinopilosus, AB249968<br />

Streptomyces roseiscleroticus, AB184251<br />

Streptomyces ruber, AB184604<br />

Streptomyces poonensis, DQ445792<br />

Streptomyces fumigatiscleroticus, DQ442499<br />

Streptomyces nogalater, AB231805<br />

Streptomyces prasinosporus, AB184390<br />

Streptomyces naganishii, DQ442529<br />

Streptomyces griseoviridis, AY999807<br />

Streptomyces spiralis, EF178683<br />

Streptomyces arenae, AJ399485<br />

Streptomyces violarus, AB184316<br />

Streptomyces janthinus, AB184851<br />

Streptomyces roseoviolaceus, AJ399484<br />

Streptomyces violaceus, AB184315<br />

Streptomyces albosporeus subsp. albosporeus, AJ781327<br />

Streptomyces hawaiiensis, AB184143<br />

Streptomyces massasporeus, AB184152<br />

Streptomyces luteogriseus, AB184379<br />

Streptomyces indiaensis, AB184553<br />

Streptomyces purpurascens, AJ399486<br />

Streptomyces iakyrus, AB184877<br />

Streptomyces bellus, AB184849<br />

Streptomyces coerulescens, AY999720<br />

Streptomyces lusitanus, AB184424<br />

Streptomyces thermocarboxydus, U94490<br />

Streptomyces speibonae, AF452714<br />

Streptomyces longispororuber, AB184440<br />

Streptomyces viridodiastaticus, AY999852<br />

Streptomyces coeruleorubidus, AY999719<br />

Streptomyces olivaceus, AB184743<br />

Streptomyces pactum, AB184398<br />

Streptomyces spinoverrucosus, AB184578<br />

Streptomyces parvulus, AB184326<br />

Streptomyces lomondensis, AB184673<br />

Streptomyces bangladeshensis, AY750056<br />

Streptomyces rameus, AY999821<br />

Streptomyces griseosporeus, AB184419<br />

Streptomyces cinerochromogenes, AB184507<br />

Streptomyces bluensis, AB184421<br />

Streptomyces glomeratus, AB249917<br />

Streptomyces thermovulgaris, Z68094<br />

Streptomyces thermogriseus, AB249980<br />

Streptomyces thermoalcalitolerans, AB249909<br />

Streptomyces thermoviolaceus subsp. apingens, Z68095<br />

Streptomyces thermoviolaceus subsp. thermoviolaceus, Z68096<br />

Streptomyces thermocarboxydovorans, U94489<br />

Streptomyces cinereospinus, AB184648<br />

Streptomyces coeruleofuscus, DQ026668<br />

Streptomyces chromofuscus, AB184194<br />

Streptomyces thermocoprophilus, AJ007402<br />

Streptomyces mexicanus, AB249966<br />

Streptomyces coeruleoprunus, AB184651<br />

Streptomyces fradiae, DQ026630<br />

Streptomyces somaliensis, AJ007403<br />

Streptomyces sulfonofaciens, AB249974<br />

Streptomyces carpaticus, DQ442494<br />

Streptomyces cheonanensis, AY822606<br />

Streptomyces hainanensis, AM398645<br />

Streptomyces sodiiphilus, AY236339<br />

Streptomyces cuspidosporus, AB184090<br />

Streptomyces sparsogenes, AB184301<br />

Amycolatopsis fastidiosa, AB184566, Pseudonocardiaceae<br />

Streptomyces malaysiensis, AB249918<br />

Streptomyces antimycoticus, AB184185<br />

Streptomyces sporoclivatus, AB249934<br />

Streptomyces melanosporofaciens, AJ271887<br />

Streptomyces yatensis, AB249962<br />

Streptomyces rutgersensis subsp. castelarensis, AY508511<br />

Streptomyces asiaticus, AB249947<br />

Streptomyces rhizosphaericus, AB249941<br />

Streptomyces cangkringensis, AJ391831<br />

Streptomyces indonesiensis, DQ334783<br />

Streptomyces endus, AY999911<br />

Streptomyces sporocinereus, AB249933<br />

Streptomyces hygroscopicus subsp. hygroscopicus, AB184428<br />

Streptomyces violaceusniger, DQ334782<br />

Streptomyces yogyakartensis, AB249942<br />

Streptomyces aculeolatus, AB184624<br />

Streptomyces synnematoformans, EF121313<br />

Streptomyces javensis, AJ391833<br />

Streptomyces albulus, AB024440<br />

Streptomyces noursei, AB184678<br />

Streptomyces yunnanensis, AF346818

---

Streptomyces yunnanensis, AF346818<br />

Streptomyces catenulae, AJ621613<br />

Streptomyces misakiensis, AB217605<br />

Streptomyces hygroscopicus subsp. decoyicus, AY999883<br />

Streptomyces libani subsp. rufus, AJ781351<br />

Streptomyces caniferus, AB184640<br />

Streptomyces hygroscopicus subsp. glebosus, AB184479<br />

Streptomyces platensis, AB045882<br />

Streptomyces lydicus, Y15507<br />

Streptomyces libani subsp. libani, AB184414<br />

Streptomyces tubercidicus, AJ621612<br />

Streptomyces nigrescens, DQ442530<br />

Streptomyces albospinus, AY999753<br />

Streptomyces sioyaensis, DQ026654<br />

Streptomyces niger, AJ621607<br />

Streptomyces olivaceiscleroticus, AJ621606<br />

Streptomyces monomycini, DQ445790<br />

Streptomyces purpurogeneiscleroticus, AJ621604<br />

Streptomyces violens, AJ621605<br />

Streptomyces ochraceiscleroticus, AB184094<br />

Streptomyces ramulosus, DQ026662<br />

Streptomyces sclerotialus, AJ621608<br />

Streptomyces rimosus subsp. rimosus, AB045883<br />

Streptomyces erumpens, AJ621603<br />

Streptomyces chrestomyceticus, AJ621609<br />

Streptomyces rimosus subsp. paromomycinus, AJ621610<br />

Streptomyces albofaciens, AB045880<br />

Streptomyces albus subsp. pathocidicus, AB184501<br />

Streptomyces hebeiensis, AY277529<br />

Streptomyces almquistii, AB184771<br />

Streptomyces gibsonii, AB184663<br />

Streptomyces rangoonensis, AB184295<br />

Streptomyces albus subsp. albus, AJ621602, type sp.<br />

Streptomyces flocculus, AB184272<br />

Streptomyces cacaoi subsp. cacaoi, AB184115<br />

Streptomyces sulphureus, DQ442546<br />

Streptomyces albiaxialis, AY999901<br />

Streptomyces armeniacus, AB018092<br />

Streptomyces ferralitis, AY262826<br />

Streptomyces rubidus, AY876941<br />

Streptomyces yeochonensis, AF101415<br />

Streptomyces yanglinensis, AY876940<br />

Streptomyces paucisporeus, AY876943<br />

Streptomyces glauciniger, AB249964<br />

Streptomyces guanduensis, AY876942<br />

Streptomyces avellaneus, AB184413<br />

Streptomyces psammoticus, AY999862<br />

Streptomyces aureofaciens, AY207608<br />

Kitasatospora putterlickiae, AY189976<br />

Kitasatospora sampliensis, AY260167<br />

Streptomyces chrysomallus subsp. fumigatus, AB184645<br />

Streptomyces purpureus, AJ781324<br />

Streptomyces xanthocidicus, AY999858<br />

Streptomyces aburaviensis, AY999886<br />

Kitasatospora azatica, U93312<br />

Kitasatospora nipponensis, AY442263<br />

Kitasatospora kifunensis, U93322<br />

Streptomyces purpeofuscus, AJ781364<br />

Streptomyces herbaricolor, AB184801<br />

Streptomyces indigoferus, AB184214<br />

Kitasatospora gansuensis, AY442265<br />

Streptomyces atroaurantiacus, DQ026645<br />

Kitasatospora mediocidica, U93324<br />

Kitasatospora paranensis, AY442268<br />

Kitasatospora terrestris, AY442266<br />

Kitasatospora cineracea, AB022875<br />

Kitasatospora niigatensis, AB249960<br />

Kitasatospora setae, U93332, type sp.<br />

Kitasatospora paracochleata, U93328<br />

Kitasatospora cochleata, U93316<br />

Kitasatospora cystarginea, AY999887<br />

Kitasatospora griseola, U93320<br />

Kitasatospora phosalacinea, AB022869<br />

Kitasatospora cheerisanensis, AF050493<br />

Kitasatospora arboriphila, AY442267<br />

Kitasatospora viridis, AY613990<br />

Streptacidiphilus albus, AF074415, type sp.<br />

Streptacidiphilus carbonis, AF074412<br />

Streptacidiphilus jiangxiensis, AB249948<br />

Streptacidiphilus neutrinimicus, AB249949<br />

Streptacidiphilus oryzae, DQ208700<br />

Streptomyces macrosporus, Z68099<br />

Streptomyces megasporus, AB184617<br />

Streptomyces glaucosporus, AB184664<br />

Streptomyces radiopugnans, DQ912930<br />

Streptomyces thermolineatus, Z68097<br />

Streptomyces vitaminophilus, AB184589<br />

Streptomyces scabrisporus, AB030585<br />

Actinospicaceae (2:0)<br />

Actinospica acidiphila, AJ865861<br />

Actinospica robiniae, AJ865863, type sp.<br />

Catenulisporaceae (2:0)<br />

Catenulispora acidiphila, AJ865857, type sp.<br />

Catenulispora rubra, AB180773<br />

Microbacteriaceae (130:0)<br />

Microbacterium kitamiense, AB013907<br />

Microbacterium aurantiacum, AB004726<br />

Microbacterium chocolatum, AB004725<br />

Microbacterium dextranolyticum, Y17230

---

Microbacterium dextranolyticum, Y17230<br />

Microbacterium laevaniformans, Y17234<br />

Microbacterium ketosireducens, AB004724<br />

Microbacterium terrae, AB004720<br />

Microbacterium thalassium, AM181507<br />

Microbacterium halotolerans, AY376165<br />

Microbacterium hominis, AM181504<br />

Microbacterium xylanilyticum, AJ853908<br />

Microbacterium halophilum, AB004714<br />

Microbacterium flavescens, Y17232<br />

Microbacterium trichothecenolyticum, Y17240<br />

Microbacterium marinilacus, AB286020<br />

Microbacterium paludicola, AJ853909<br />

Microbacterium sediminicola, AB286021<br />

Microbacterium arborescens, X77443<br />

Microbacterium imperiale, X77442<br />

Microbacterium ulmi, AY062021<br />

Microbacterium gubbeenense, AF263563<br />

Microbacterium indicum, AM158907<br />

Microbacterium barkeri, X77446<br />

Microbacterium deminutum, AB234026<br />

Microbacterium pumilum, AB234027<br />

Microbacterium terricola, AB234025<br />

Microbacterium terregens, AB004721<br />

Microbacterium aoyamense, AB234028<br />

Microbacterium aurum, Y17229<br />

Microbacterium koreense, AY962574<br />

Microbacterium schleiferi, Y17237<br />

Microbacterium lacticum, X77441, type sp.<br />

Microbacterium oleivorans, AJ698725<br />

Microbacterium testaceum, X77445<br />

Microbacterium keratanolyticum, AB004717<br />

Microbacterium phyllosphaerae, AJ277840<br />

Microbacterium foliorum, AJ249780<br />

Microbacterium hydrocarbonoxydans, AJ698726<br />

Microbacterium maritypicum, AJ853910<br />

Microbacterium oxydans, Y17227<br />

Microbacterium liquefaciens, X77444<br />

Microbacterium saperdae, AB004719<br />

Microbacterium luteolum, AB004718<br />

Microbacterium paraoxydans, AJ491806<br />

Microbacterium aerolatum, AJ309929<br />

Microbacterium natoriense, AY566291<br />

Microbacterium resistens, Y14699<br />

Microbacterium arabinogalactanolyticum, Y17228<br />

Microbacterium esteraromaticum, Y17231<br />

Mycetocola saprophilus, AB012647, type sp.<br />

Mycetocola tolaasinivorans, AB012646<br />

Mycetocola lacteus, AB012648<br />

Okibacterium fritillariae, AB042094, type sp.<br />

Plantibacter flavus, AJ310417, type sp.<br />

Agrococcus baldri, AB279548<br />

Agrococcus citreus, AB279547<br />

Agrococcus jenensis, X92492, type sp.<br />

Agrococcus lahaulensis, DQ156908<br />

Agrococcus casei, DQ168427<br />

Agreia bicolorata, AF159363, type sp.<br />

Agreia pratensis, AJ310412<br />

Subtercola boreus, AF224722, type sp.<br />

Subtercola frigoramans, AF224723<br />

Leifsonia rubra, AJ438585<br />

Rhodoglobus vestalii, AJ459101, type sp.<br />

Leifsonia aurea, AJ438586<br />

Salinibacterium amurskyense, AF539697, type sp.<br />

Leifsonia ginsengi, DQ473536<br />

Clavibacter michiganensis subsp. michiganensis, X77435, type sp.<br />

Clavibacter michiganensis subsp. tessellarius, U30254<br />

Clavibacter michiganensis subsp. insidiosus, U09761<br />

Clavibacter michiganensis subsp. nebraskensis, X77434<br />

Frigoribacterium faeni, Y18807, type sp.<br />

Frondicola australicus, DQ525859, type sp.<br />

Cryobacterium psychrophilum, AJ544063, type sp.<br />

Cryobacterium psychrotolerans, DQ515963<br />

Labedella gwakjiensis, DQ533552, type sp.<br />

Rathayibacter iranicus, AM410684<br />

Rathayibacter toxicus, D84127<br />

Rathayibacter caricis, AF159364<br />

Rathayibacter rathayi, X77439, type sp.<br />

Rathayibacter festucae, AM410683<br />

Rathayibacter tritici, X77438<br />

Microcella alkaliphila, AJ717385<br />

Microcella putealis, AJ717388, type sp.<br />

Yonghaparkia alkaliphila, DQ256087, type sp.<br />

Curtobacterium flaccumfaciens, AJ312209<br />

Curtobacterium herbarum, AJ310413<br />

Curtobacterium pusillum, AJ784400<br />

Curtobacterium albidum, AB046363<br />

Curtobacterium citreum, X77436, type sp.<br />

Curtobacterium ammoniigenes, AB266597<br />

Curtobacterium luteum, X77437<br />

Leifsonia aquatica, D45057, type sp.<br />

Leifsonia naganoensis, DQ232612<br />

Leifsonia shinshuensis, DQ232614<br />

Leifsonia xyli subsp. cynodontis, AB016985<br />

Leifsonia poae, AF116342<br />

Agromyces bracchium, AB023359<br />

Agromyces luteolus, AB023356<br />

Agromyces ulmi, AY427830<br />

Agromyces aurantiacus, AF389342<br />

Agromyces mediolanus, X77449<br />

Agromyces allii, DQ673873<br />

Agromyces salentinus, AY507129

---

Agromyces italicus, AY618215<br />

Agromyces lapidis, AY618217<br />

Agromyces humatus, AY618216<br />

Agromyces neolithicus, AY507128<br />

Agromyces subbeticus, AY737778<br />

Agromyces ramosus, X77447, type sp.<br />

Agromyces albus, AF503917<br />

Agromyces cerinus subsp. cerinus, D45060<br />

Agromyces hippuratus, D45061<br />

Agromyces cerinus subsp. nitratus, AY277619<br />

Agromyces rhizospherae, AB023357<br />

Plantibacter auratus, AB012593<br />

Zimmermannella alba, AB012590<br />

Pseudoclavibacter helvolus, X77440, type sp.<br />

Zimmermannella faecalis, AF300651<br />

Gulosibacter molinativorax, AJ306835, type sp.<br />

Zimmermannella bifida, AB012595<br />

Leucobacter alluvii, AM072820<br />

Leucobacter iarius, AM040493<br />

Leucobacter aridicollis, AJ781047<br />

Leucobacter albus, AB012594<br />

Leucobacter komagatae, D45063, type sp.<br />

Leucobacter chromiireducens subsp. solipictus, DQ845457<br />

Leucobacter chromiireducens subsp. chromiireducens, AJ781046<br />

Leucobacter luti, AM072819<br />

Beutenbergiaceae (2:0)<br />

Beutenbergia cavernae, Y18378, type sp.<br />

Salana multivorans, AJ400627, type sp.<br />

Actinomycetaceae (50:0)<br />

Actinomyces dentalis, AJ697609<br />

Actinomyces ruminicola, DQ072005<br />

Actinomyces gerencseriae, X80414<br />

Actinomyces israelii, X82450<br />

Actinomyces oricola, AJ507295<br />

Actinomyces howellii, X80411<br />

Actinomyces naeslundii, X81062<br />

Actinomyces viscosus, X82453<br />

Actinomyces denticolens, X80412<br />

Actinomyces bowdenii, AJ234039<br />

Actinomyces slackii, AJ234066<br />

Actinomyces bovis, X81061, type sp.<br />

Actinomyces urogenitalis, AJ243791<br />

Actinomyces catuli, AJ276805<br />

Actinomyces radicidentis, AJ251986<br />

Actinomyces graevenitzii, AJ540309<br />

Actinomyces neuii subsp. neuii, AM084228<br />

Actinomyces neuii subsp. anitratus, AM084229<br />

Varibaculum cambriense, AJ428402, type sp.<br />

Actinomyces coleocanis, AJ249326<br />

Actinomyces europaeus, Y08828<br />

Actinomyces hyovaginalis, X69616<br />

Actinomyces radingae, X78719<br />

Actinomyces suimastitidis, AJ277385<br />

Actinomyces funkei, AJ404889<br />

Actinomyces georgiae, X80413<br />

Actinomyces meyeri, X82451<br />

Actinomyces odontolyticus, AJ234040<br />

Actinomyces cardiffensis, AJ421779<br />

Actinomyces vaccimaxillae, AJ427451<br />

Actinomyces turicensis, X78720<br />

Actinomyces canis, AJ243891<br />

Actinomyces hongkongensis, AF433168<br />

Actinomyces marimammalium, AJ276405<br />

Actinomyces hordeovulneris, X82448<br />

Actinomyces nasicola, AJ508455<br />

Arcanobacterium bernardiae, X79224<br />

Arcanobacterium pyogenes, X79225<br />

Arcanobacterium bialowiezense, AJ879696<br />

Arcanobacterium bonasi, AJ879697<br />

Arcanobacterium haemolyticum, AJ234059, type sp.<br />

Arcanobacterium pluranimalium, AJ250959<br />

Arcanobacterium hippocoleae, AJ300767<br />

Actinobaculum massiliense, AF487679<br />

Actinobaculum suis, S83623, type sp.<br />

Actinobaculum schaalii, Y12329<br />

Actinobaculum urinale, AJ439453<br />

Mobiluncus curtisii subsp. holmesii, AJ427624<br />

Mobiluncus curtisii subsp. curtisii, AJ318408, type sp.<br />

Mobiluncus mulieris, AJ318410<br />

Jonesiaceae (2:0)<br />

Jonesia denitrificans, X78420, type sp.<br />

Jonesia quinghaiensis, AJ626896<br />

Ruania albidiflava, DQ343153, Unclassified Micrococcineae, type sp.<br />

Georgenia muralis, X94155, Beutenbergiaceae, type sp.<br />

Georgenia ruanii, DQ203185, Beutenbergiaceae<br />

Bogoriella caseilytica, Y09911, Bogoriellaceae, type sp.<br />

Rarobacteraceae (2:0)<br />

Rarobacter faecitabidus, Y17870, type sp.<br />

Rarobacter incanus, AB056129<br />

Micrococcaceae and Yaniellaceae (83:0)<br />

Acaricomes phytoseiuli, AJ812213, type sp.<br />

Renibacterium salmoninarum, AF180950, type sp.<br />

Arthrobacter russicus, AB071950<br />

Arthrobacter psychrolactophilus, AF134179<br />

Arthrobacter stackebrandtii, AJ640198<br />

Arthrobacter sulfonivorans, AF235091

---

Arthrobacter sulfonivorans, AF235091<br />

Arthrobacter roseus, AJ278870<br />

Arthrobacter oxydans, X83408<br />

Arthrobacter polychromogenes, X80741<br />

Arthrobacter scleromae, AF330692<br />

Arthrobacter chlorophenolicus, AF102267<br />

Arthrobacter aurescens, X83405<br />

Arthrobacter nitroguajacolicus, AJ512504<br />

Arthrobacter ilicis, X83407<br />

Arthrobacter histidinolovorans, X83406<br />

Arthrobacter nicotinovorans, X80743<br />

Arthrobacter ureafaciens, X80744<br />

Arthrobacter gandavensis, AJ316140<br />

Arthrobacter koreensis, AY116496<br />

Arthrobacter luteolus, AJ243422<br />

Arthrobacter citreus, X80737<br />

Arthrobacter monumenti, AJ315070<br />

Arthrobacter methylotrophus, AF235090<br />

Arthrobacter parietis, AJ639830<br />

Arthrobacter tumbae, AJ315069<br />

Arthrobacter tecti, AJ639829<br />

Arthrobacter agilis, X80748<br />

Arthrobacter psychrophenolicus, AJ616763<br />

Arthrobacter sulfureus, X83409<br />

Arthrobacter kerguelensis, AJ606062<br />

Arthrobacter gangotriensis, AJ606061<br />

Arthrobacter rhombi, Y15885<br />

Arthrobacter globiformis, X80736, type sp.<br />

Arthrobacter pascens, X80740<br />

Arthrobacter ramosus, X80742<br />

Arthrobacter woluwensis, X93353<br />

Arthrobacter mysorens, AJ617482<br />

Arthrobacter uratoxydans, X83410<br />

Arthrobacter nicotianae, X80739<br />

Arthrobacter arilaitensis, AJ609628<br />

Arthrobacter ardleyensis, AJ551163<br />

Arthrobacter bergerei, AJ609630<br />

Arthrobacter protophormiae, X80745<br />

Arthrobacter creatinolyticus, D88211<br />

Citricoccus alkalitolerans, AY376164<br />

Citricoccus muralis, AJ344143, type sp.<br />

Micrococcus luteus, AJ536198, type sp.<br />

Micrococcus flavus, DQ491453<br />

Micrococcus antarcticus, AJ005932<br />

Micrococcus lylae, X80750<br />

Zhihengliuella halotolerans, DQ372937, type sp.<br />

Arthrobacter castelli, AJ639826<br />

Arthrobacter pigmenti, AJ639827<br />

Arthrobacter nasiphocae, AJ292364<br />

Nesterenkonia aethiopica, AY574575<br />

Nesterenkonia xinjiangensis, AY226510<br />

Nesterenkonia lacusekhoensis, AJ290397<br />

Nesterenkonia halobia, X80747, type sp.<br />

Nesterenkonia halotolerans, AY226508<br />

Nesterenkonia sandarakina, AY588277<br />

Nesterenkonia jeotgali, AY928901<br />

Nesterenkonia lutea, AY588278<br />

Yaniellaceae (2:0)<br />

Yania flava, AY684123<br />

Yania halotolerans, AY228479, type sp.<br />

Arthrobacter albus, AJ243421<br />

Arthrobacter cumminsii, X93354<br />

Arthrobacter atrocyaneus, X80746<br />

Arthrobacter crystallopoietes, X80738<br />

Kocuria carniphila, AJ622907<br />

Kocuria marina, AY211385<br />

Kocuria rhizophila, Y16264<br />

Kocuria varians, X87754<br />

Kocuria kristinae, X80749<br />

Kocuria palustris, Y16263<br />

Kocuria aegyptia, DQ059617<br />

Kocuria himachalensis, AY987383<br />

Kocuria polaris, AJ278868<br />

Kocuria rosea, X87756, type sp.<br />

Rothia aeria, AB071952<br />

Rothia dentocariosa, M59055, type sp.<br />

Rothia mucilaginosa, X87758<br />

Rothia amarae, AY043359<br />

Rothia nasimurium, AJ131121<br />

Bifidobacteriaceae (34:0)<br />

Bifidobacterium adolescentis , AP009256<br />

Bifidobacterium ruminantium, D86197<br />

Bifidobacterium angulatum, D86182<br />

Bifidobacterium catenulatum, AF432082<br />

Bifidobacterium pseudocatenulatum, D86187<br />

Bifidobacterium dentium, D86183<br />

Bifidobacterium bifidum, U25952, type sp.<br />

Bifidobacterium scardovii, AJ307005<br />

Bifidobacterium thermacidophilum subsp. thermacidophilum, AB016246<br />

Bifidobacterium thermacidophilum subsp. porcinum, AY148470<br />

Bifidobacterium boum, D86190<br />

Bifidobacterium animalis subsp. lactis, AB050136<br />

Bifidobacterium animalis subsp. animalis, D86185<br />

Bifidobacterium choerinum, D86186<br />

Bifidobacterium pseudolongum subsp. pseudolongum, D86195<br />

Bifidobacterium pseudolongum subsp. globosum, D86194<br />

Bifidobacterium merycicum, D86193<br />

Bifidobacterium gallicum, D86189<br />

Bifidobacterium breve, AB006658<br />

Bifidobacterium longum, M58739

---

Bifidobacterium longum, M58739<br />

Bifidobacterium gallinarum, D86191<br />

Bifidobacterium saeculare, D89328<br />

Bifidobacterium pullorum, D86196<br />

Bifidobacterium subtile, D89378<br />

Gardnerella vaginalis, M58744, type sp.<br />

Bifidobacterium coryneforme, M58733<br />

Bifidobacterium indicum, D86188<br />

Bifidobacterium minimum, M58741<br />

Bifidobacterium psychraerophilum, AY174108<br />

Parascardovia denticolens, D89331, type sp.<br />

Scardovia inopinata, D89332, type sp.<br />

Aeriscardovia aeriphila, AY174107, type sp.<br />

<strong>All</strong>oscardovia omnicolens, AM419460, type sp.<br />

Metascardovia criceti, AB241105<br />

Brevibacteriaceae (16:0)<br />

Brevibacterium antiquum, AY243344<br />

Brevibacterium aurantiacum, X76566<br />

Brevibacterium picturae, AJ620364<br />

Brevibacterium celere, AY228463<br />

Brevibacterium sanguinis, AJ564859<br />

Brevibacterium casei, AJ251418<br />

Brevibacterium iodinum, X83813<br />

Brevibacterium linens, X77451, type sp.<br />

Brevibacterium epidermidis, X76565<br />

Brevibacterium permense, AY243343<br />

Brevibacterium avium, Y17962<br />

Brevibacterium luteolum, AJ488509<br />

Brevibacterium otitidis, AF133534<br />

Brevibacterium mcbrellneri, X93594<br />

Brevibacterium paucivorans, AJ251463<br />

Brevibacterium samyangense, DQ344485<br />

Dermabacteraceae (12:0)<br />

Brachybacterium alimentarium, X91031<br />

Brachybacterium tyrofermentans, X91657<br />

Brachybacterium fresconis, AJ415378<br />

Brachybacterium faecium, X83810, type sp.<br />

Brachybacterium paraconglomeratum, AJ415377<br />

Brachybacterium sacelli, AJ415384<br />

Brachybacterium nesterenkovii, X91033<br />

Brachybacterium rhamnosum, AJ415376<br />

Brachybacterium muris, AJ537574<br />

Brachybacterium zhongshanense, EF125186<br />

Brachybacterium phenoliresistens, DQ822566<br />

Dermabacter hominis, X91034, type sp.<br />

Promicromonosporaceae (15:0)<br />

Promicromonospora aerolata, AJ487303<br />

Promicromonospora vindobonensis, AJ487302<br />

Promicromonospora sukumoe, AB023375<br />

Promicromonospora citrea, X83808, type sp.<br />

Myceligenerans xiligouense, AY354285, type sp.<br />

Xylanimicrobium pachnodae, AF105422, type sp.<br />

Xylanibacterium ulmi, AY273185, type sp.<br />

Xylanimonas cellulosilytica, AF403541, type sp.<br />

Isoptericola hypogeus, AJ854061<br />

Isoptericola variabilis, AJ298873, type sp.<br />

Isoptericola halotolerans, AY789835<br />

Isoptericola dokdonensis, DQ387860<br />

Cellulosimicrobium cellulans, X83809, type sp.<br />

Cellulosimicrobium funkei, AY501364<br />

Cellulosimicrobium terreum, EF076760<br />

Oerskovia paurometabola, AJ314851, Cellulomonadaceae<br />

Oerskovia turbata, X79454, Cellulomonadaceae, type sp.<br />

Oerskovia jenensis, AJ314848, Cellulomonadaceae<br />

Oerskovia enterophila, X83807, Cellulomonadaceae<br />

Sanguibacteraceae (4:0)<br />

Sanguibacter inulinus, X79451<br />

Sanguibacter suarezii, X79452<br />

Sanguibacter keddieii, X79450, type sp.<br />

Sanguibacter marinus, AJ783958<br />

Cellulomonadaceae (18:0)<br />

Cellulomonas gelida, X79461<br />

Cellulomonas uda, X83801<br />

Cellulomonas iranensis, AF064702<br />

Cellulomonas composti, AB166887<br />

Cellulomonas flavigena, X79463, type sp.<br />

Cellulomonas persica, AF064701<br />

Cellulomonas humilata, X82449<br />

Cellulomonas xylanilytica, AY303668<br />

Cellulomonas terrae, AY884570<br />

Cellulomonas denverensis, AY501362<br />

Cellulomonas hominis, X82598<br />

Cellulomonas biazotea, X83802<br />

Cellulomonas fimi, X83803<br />

Cellulomonas cellasea, X83804<br />

Actinotalea fermentans, X79458, type sp.<br />

Demequina aestuarii, DQ010160, Unclassified Micrococcineae, type sp.<br />

Tropheryma whipplei, AF251035, type sp.<br />

Cellulomonas bogoriensis, X92152<br />

Intrasporangiaceae (25:0)<br />

Janibacter anophelis, AY837752<br />

Janibacter corallicola, AB286023<br />

Janibacter melonis, AY522568<br />

Janibacter terrae, AF176948<br />

Janibacter limosus, Y08539, type sp.

---

Knoellia sinensis, AJ294412, type sp.<br />

Knoellia subterranea, AJ294413<br />

Knoellia aerolata, EF553529<br />

Tetrasphaera veronensis, Y14595<br />

Tetrasphaera jenkinsii, DQ007321<br />

Tetrasphaera australiensis, AF125091<br />

Tetrasphaera vanveenii, DQ007320<br />

Tetrasphaera elongata, AB030911<br />

Tetrasphaera duodecadis, AB072496<br />

Tetrasphaera japonica, AF125092, type sp.<br />

Terrabacter terrae, AY944176<br />

Terrabacter tumescens, AF005023, type sp.<br />

Terrabacter aerolatus, EF212039<br />

Terracoccus luteus, Y11928, type sp.<br />

Humihabitans oryzae, AB282887, type sp.<br />

Intrasporangium calvum, AJ566282, type sp.<br />

Kribbia dieselivorans, DQ372707, type sp.<br />

Phycicoccus jejuensis, DQ345443, type sp.<br />

Lapillicoccus jejuensis, AM398397, type sp.<br />

Oryzihumus leptocrescens, AB193172, type sp.<br />

Dermatophilaceae (3:0)<br />

Dermatophilus congolensis, AJ243918, type sp.<br />

Kineosphaera limosa, AF109792, type sp.<br />

Dermatophilus chelonae, AJ243919<br />

Arsenicicoccus bolidensis, AJ558133, Intrasporangiaceae, type sp.<br />

Dermacoccaceae (8:0)<br />

Dermacoccus barathri, AY894328<br />

Dermacoccus profundi, AY894329<br />

Dermacoccus abyssi, AY894323<br />

Dermacoccus nishinomiyaensis, X87757, type sp.<br />

Demetria terragena, Y14152, type sp.<br />

Serinicoccus marinus, AY382898, Intrasporangiaceae, type sp.<br />

Kytococcus schroeteri, AJ297722<br />

Kytococcus sedentarius, X87755, type sp.<br />

Ornithinimicrobium humiphilum, AJ277650, Intrasporangiaceae, type sp.<br />

Ornithinimicrobium kibberense, AY636111, Intrasporangiaceae<br />

Ornithinicoccus hortensis, Y17869, Intrasporangiaceae, type sp.<br />

Kineosporiaceae (7:0)<br />

Kineosporia aurantiaca, AF095336, type sp.<br />

Kineosporia succinea, AB003932<br />

Kineosporia rhamnosa, AB003935<br />

Kineococcus aurantiacus, X77958, type sp.<br />

Kineococcus radiotolerans, AF247813<br />

Kineococcus marinus, DQ200982<br />

Quadrisphaera granulorum, AY831385, Nakamurellaceae, type sp.<br />

Nakamurellaceae (2:0)<br />

Humicoccus flavidus, DQ321750, type sp.<br />

Nakamurella multipartita, Y08541, type sp.<br />

Geodermatophilaceae (6:0)<br />

Modestobacter multiseptatus, Y18646, type sp.<br />

Modestobacter versicolor, AJ871304<br />

Blastococcus jejuensis, DQ200983<br />

Geodermatophilus obscurus, X92356, type sp.<br />

Blastococcus aggregatus, L40614, type sp.<br />

Blastococcus saxobsidens, AJ316571<br />

Sporichthyaceae (2:0)<br />

Sporichthya brevicatena, AB006164<br />

Sporichthya polymorpha, AB025317, type sp.<br />

Cryptosporangium arvum, D85465, Kineosporiaceae, type sp.<br />

Cryptosporangium japonicum, D85466, Kineosporiaceae<br />

Cryptosporangium minutisporangium, AB037007, Kineosporiaceae<br />

Cryptosporangium aurantiacum, AJ293746, Kineosporiaceae<br />

Mycobacteriaceae (116:0)<br />

Mycobacterium tuberculosis, X58890, type sp.<br />

Mycobacterium caprae, AJ131120<br />

Mycobacterium africanum, AF480605<br />

Mycobacterium microti, AF480584<br />

Mycobacterium pinnipedii, AF502574<br />

Mycobacterium marinum, AF456240<br />

Mycobacterium pseudoshottsii, AY570988<br />

Mycobacterium shottsii, AY005147<br />

Mycobacterium lacus, AF406783<br />

Mycobacterium avium subsp. paratuberculosis, X52934<br />

Mycobacterium avium subsp. avium, AJ536037<br />

Mycobacterium colombiense, AM062764<br />

Mycobacterium bohemicum, U84502<br />

Mycobacterium malmoense, X52930<br />

Mycobacterium nebraskense, AY368456<br />

Mycobacterium gastri, AF480602<br />

Mycobacterium kansasii, AJ536035<br />

Mycobacterium genavense, X60070<br />

Mycobacterium parmense, AF466821<br />

Mycobacterium triplex, U57632<br />

Mycobacterium florentinum, AJ616230<br />

Mycobacterium montefiorense, AF330038<br />

Mycobacterium lentiflavum, AF480583<br />

Mycobacterium heidelbergense, AJ000684<br />

Mycobacterium simiae, X52931<br />

Mycobacterium kubicae, AF133902<br />

Mycobacterium palustre, AJ308603<br />

Mycobacterium parascrofulaceum, AY337273<br />

Mycobacterium intermedium, X67847<br />

Mycobacterium chimaera, AJ548480

---

Mycobacterium intracellulare, AJ536036<br />

Mycobacterium scrofulaceum, AF480604<br />

Mycobacterium seoulense, DQ536403<br />

Mycobacterium szulgai, X52926<br />

Mycobacterium branderi, AF480574<br />

Mycobacterium celatum, L08169<br />

Mycobacterium cookii, X53896<br />

Mycobacterium gordonae, X52923<br />

Mycobacterium asiaticum, AF480595<br />

Mycobacterium conspicuum, X88922<br />

Mycobacterium botniense, AJ012756<br />

Mycobacterium xenopi, AJ536033<br />

Mycobacterium heckeshornense, AF174290<br />

Mycobacterium shimoidei, AJ005005<br />

Mycobacterium hassiacum, U49401<br />

Mycobacterium holsaticum, AJ310467<br />

Mycobacterium elephantis, AJ010747<br />

Mycobacterium pulveris, AJ429046<br />

Mycobacterium phlei, AF480603<br />

Mycobacterium confluentis, AJ634379<br />

Mycobacterium hiberniae, X67096<br />

Mycobacterium nonchromogenicum, X52928<br />

Mycobacterium kumamotonense, AB239925<br />

Mycobacterium terrae, M29568<br />

Mycobacterium triviale, DQ058405<br />

Mycobacterium chitae, X55603<br />

Mycobacterium fallax, AF480600<br />

Mycobacterium brumae, AF480576<br />

Mycobacterium moriokaense, AJ429044<br />

Mycobacterium gadium, X55594<br />

Mycobacterium thermoresistibile, X55602<br />

Mycobacterium doricum, AF264700<br />

Mycobacterium monacense, AF107039<br />

Mycobacterium novocastrense, U96747<br />

Mycobacterium duvalii, U94745<br />

Mycobacterium agri, AJ429045<br />

Mycobacterium flavescens, X52932<br />

Mycobacterium goodii, Y12872<br />

Mycobacterium smegmatis, AJ131761<br />

Mycobacterium wolinskyi, AY457083<br />

Mycobacterium mageritense, AJ699399<br />

Mycobacterium fluoranthenivorans, AJ617741<br />

Mycobacterium frederiksbergense, AJ276274<br />

Mycobacterium diernhoferi, AF480599<br />

Mycobacterium hodleri, X93184<br />

Mycobacterium neoaurum, AF480593<br />

Mycobacterium cosmeticum, AY449728<br />

Mycobacterium canariasense, AY255478<br />

Mycobacterium brisbanense, AY012577<br />

Mycobacterium rhodesiae, AJ429047<br />

Mycobacterium tusciae, AF058299<br />

Mycobacterium aichiense, X55598<br />

Mycobacterium austroafricanum, X93182<br />

Mycobacterium vanbaalenii, X84977<br />

Mycobacterium vaccae, AF480591<br />

Mycobacterium aurum, X55595<br />

Mycobacterium pyrenivorans, AJ431371<br />

Mycobacterium chubuense, AF480597<br />

Mycobacterium chlorophenolicum, X79292<br />

Mycobacterium poriferae, AF480589<br />

Mycobacterium psychrotolerans, AJ534886<br />

Mycobacterium gilvum, X81996<br />

Mycobacterium parafortuitum, X93183<br />

Mycobacterium obuense, X55597<br />

Mycobacterium abscessus, AY457071<br />

Mycobacterium bolletii, AY859681<br />

Mycobacterium massiliense, AY593980<br />

Mycobacterium chelonae, AY457072<br />

Mycobacterium salmoniphilum, DQ866768<br />

Mycobacterium immunogenum, AJ812215<br />

Mycobacterium tokaiense, AF480590<br />

Mycobacterium komossense, X55591<br />

Mycobacterium conceptionense, AY859684<br />

Mycobacterium alvei, AF023664<br />

Mycobacterium peregrinum, AY457069<br />

Mycobacterium septicum, AY457070<br />

Mycobacterium neworleansense, AY457068<br />

Mycobacterium porcinum, AY457077<br />

Mycobacterium boenickei, AY012573<br />

Mycobacterium fortuitum subsp. fortuitum, AY457066<br />

Mycobacterium farcinogenes, AY457084<br />

Mycobacterium houstonense, AY457067<br />

Mycobacterium senegalense, AY457081<br />

Mycobacterium mucogenicum, AY457074<br />

Mycobacterium phocaicum, AY859682<br />

Mycobacterium aubagnense, AY859683<br />

Tsukamurellaceae (8:0)<br />

Tsukamurella spongiae, AY714239<br />

Tsukamurella pulmonis, X92981<br />

Tsukamurella pseudospumae, AY238513<br />

Tsukamurella strandjordii, AF283283<br />

Tsukamurella tyrosinosolvens, AY238514<br />

Tsukamurella spumae, Z37150<br />

Tsukamurella paurometabola, AF283280, type sp.<br />

Tsukamurella inchonensis, AF283281<br />

Corynebacteriaceae (70:0)<br />

Corynebacterium sundsvallense, Y09655<br />

Corynebacterium thomssenii, AF010474<br />

Corynebacterium glaucum, AJ431634

---

Corynebacterium imitans, Y09044<br />

Corynebacterium riegelii, Y14651<br />

Corynebacterium tuscaniense, AY677186<br />

Corynebacterium appendicis, AJ314919<br />

Corynebacterium auris, X81873<br />

Corynebacterium lipophiloflavum, Y09045<br />

Corynebacterium afermentans subsp. afermentans, X82054<br />

Corynebacterium afermentans subsp. lipophilum, X82055<br />

Corynebacterium coyleae, X96497<br />

Corynebacterium ureicelerivorans, AM397636<br />

Corynebacterium mucifaciens, Y11200<br />

Corynebacterium capitovis, AJ297402<br />

Corynebacterium mycetoides, X84241<br />

Corynebacterium cystitidis, X84252<br />

Corynebacterium glucuronolyticum, X86688<br />

Corynebacterium camporealensis, Y09569<br />

Corynebacterium atypicum, AJ441057<br />

Turicella otitidis, X73976, Unclassified Bifidobacteriales, type sp.<br />

Corynebacterium mastitidis, Y09806<br />

Corynebacterium caspium, AJ566641<br />

Corynebacterium renale, X81909<br />

Corynebacterium durum, Z97069<br />

Corynebacterium confusum, Y15886<br />

Brevibacterium stationis, AJ620367, Brevibacteriaceae<br />

Corynebacterium casei, AF267152<br />

Corynebacterium ammoniagenes, X84440<br />

Corynebacterium flavescens, X84441<br />

Corynebacterium phocae, Y10076<br />

Corynebacterium pilosum, X81908<br />

Corynebacterium accolens, AJ439346<br />

Corynebacterium macginleyi, AJ439345<br />

Corynebacterium tuberculostearicum, AJ438050<br />

Corynebacterium propinquum, X84438<br />

Corynebacterium pseudodiphtheriticum, AJ439343<br />

Corynebacterium ciconiae, AJ555193<br />

Corynebacterium minutissimum, X84678<br />

Corynebacterium singulare, Y10999<br />

Corynebacterium aurimucosum, AJ309207<br />

Corynebacterium simulans, AJ012837<br />

Corynebacterium striatum, X84442<br />

Corynebacterium kutscheri, X81871<br />

Corynebacterium matruchotii, X82065<br />

Corynebacterium pseudotuberculosis, X81916<br />

Corynebacterium ulcerans, X84256<br />

Corynebacterium diphtheriae, X84248, type sp.<br />

Corynebacterium felinum, AJ401282<br />

Corynebacterium testudinoris, AJ295841<br />

Corynebacterium aquilae, AJ496733<br />

Corynebacterium halotolerans, AY226509<br />

Corynebacterium spheniscorum, AJ429234<br />

Corynebacterium callunae, X84251<br />

Corynebacterium glutamicum, AF314192<br />

Corynebacterium efficiens, AB055963<br />

Corynebacterium auriscanis, AJ243819<br />

Corynebacterium resistens, AB128981<br />

Corynebacterium suicordis, AJ504424<br />

Corynebacterium jeikeium, X84250<br />

Corynebacterium urealyticum, X81913<br />

Corynebacterium falsenii, Y13024<br />

Corynebacterium terpenotabidum, AB004730<br />

Corynebacterium variabile, AJ222815<br />

Corynebacterium kroppenstedtii, Y10077<br />

Corynebacterium bovis, X84444<br />

Corynebacterium freneyi, AJ292762<br />

Corynebacterium xerosis, X81914<br />

Corynebacterium amycolatum, X82057<br />

Corynebacterium sphenisci, AJ440964<br />

Dietziaceae (5:0)<br />

Dietzia kunjamensis, AY972480<br />

Dietzia maris, X79290, type sp.<br />

Dietzia natronolimnaea, X92157<br />

Dietzia psychralcaliphila, AB049630<br />

Dietzia cinnamea, AJ920289<br />

Gordoniaceae (25:0)<br />

Gordonia amarae, X80635<br />

Gordonia effusa, AB162799<br />

Gordonia hydrophobica, X87340<br />

Gordonia malaquae, AM406674<br />

Gordonia sihwensis, AJ416151<br />

Gordonia shandongensis, DQ420167<br />

Gordonia hirsuta, X93485<br />

Gordonia desulfuricans, AF101416<br />

Gordonia amicalis, AF101418<br />

Gordonia rubripertincta, AY995557<br />

Gordonia alkanivorans, Y18054<br />

Gordonia westfalica, AJ312907<br />

Gordonia namibiensis, AF380930<br />

Gordonia paraffinivorans, AF432348<br />

Gordonia terrae, X79286<br />

Gordonia araii, AB162800<br />

Gordonia defluvii, AY650265<br />

Gordonia aichiensis, X80633<br />

Gordonia sputi, X80634<br />

Gordonia otitidis, AB122026<br />

Gordonia polyisoprenivorans, Y18310<br />

Gordonia soli, AY995560<br />

Gordonia sinesedis, AF380834<br />

Gordonia bronchialis, X79287, type sp.<br />

Gordonia rhizosphera, AB004729

---

Williamsiaceae (5:0)<br />

Williamsia muralis, Y17384, type sp.<br />

Williamsia marianensis, AY894336<br />

Williamsia maris, AB010909<br />

Williamsia deligens, AJ920290<br />

Williamsia serinedens, AM283464<br />

Skermania piniformis, Z35435, Gordoniaceae, type sp.<br />

Millisia brevis, AY534742, Gordoniaceae, type sp.<br />

Rhodococcus gordoniae, AY233201, Nocardiaceae<br />

Rhodococcus pyridinivorans, AF173005, Nocardiaceae<br />

Rhodococcus rhodochrous, X79288, Nocardiaceae, type sp.<br />

Rhodococcus coprophilus, U93340, Nocardiaceae<br />

Rhodococcus zopfii, AF191343, Nocardiaceae<br />

Rhodococcus aetherivorans, AF447391, Nocardiaceae<br />

Rhodococcus ruber, X80625, Nocardiaceae<br />

Rhodococcus phenolicus, AY533293, Nocardiaceae<br />

Nocardiaceae (69:0)<br />

Nocardia concava, AB126880<br />

Nocardia seriolae, AF430039<br />

Nocardia otitidiscaviarum, AF430067<br />

Nocardia uniformis, AF430044<br />

Nocardia inohanensis, AB092560<br />

Nocardia yamanashiensis, AB092561<br />

Nocardia niigatensis, DQ659910<br />

Nocardia acidivorans, AM402972<br />

Nocardia crassostreae, AF430049<br />

Nocardia nova, AF430028<br />

Nocardia miyunensis, AY639901<br />

Nocardia pseudobrasiliensis, AF430042<br />

Nocardia lijiangensis, AY779043<br />

Nocardia polyresistens, AY626158<br />

Nocardia xishanensis, AY333115<br />

Nocardia gamkensis, DQ235272<br />

Nocardia exalbida, AB187522<br />

Nocardia takedensis, AB158277<br />

Nocardia anaemiae, AB162801<br />

Nocardia pseudovaccinii, AF430046<br />

Nocardia vinacea, AB024312<br />

Nocardia terpenica, AB201298<br />

Nocardia jiangxiensis, AY639902<br />

Nocardia caishijiensis, AF459443<br />

Nocardia cummidelens, AF430052<br />

Nocardia soli, AF430051<br />

Nocardia fluminea, AF277204<br />

Nocardia salmonicida, AF430050<br />

Nocardia coubleae, DQ235688<br />

Nocardia ignorata, AJ303008<br />

Nocardia jejuensis, AY964666<br />

Nocardia ninae, DQ235687<br />

Nocardia alba, AY222321<br />

Nocardia neocaledoniensis, AY282603<br />

Nocardia carnea, AF430035<br />

Nocardia speluncae, AM422449<br />

Nocardia sienata, AB121770<br />

Nocardia testacea, AB192415<br />

Nocardia flavorosea, Z46754<br />

Nocardia pigrifrangens, AF219974<br />

Nocardia brevicatena, AF430040<br />

Nocardia paucivorans, AF430041<br />

Nocardia cyriacigeorgica, AF430027<br />

Nocardia brasiliensis, AF430038<br />

Nocardia tenerifensis, AJ556157<br />

Nocardia harenae, DQ282122<br />

Nocardia transvalensis, AF430047<br />

Nocardia abscessus, AF218292<br />

Nocardia asteroides, AF430019, type sp.<br />

Nocardia thailandica, AB126874<br />

Nocardia kruczakiae, AY441974<br />

Nocardia veterana, AF430055<br />

Nocardia aobensis, AB126876<br />

Nocardia cerradoensis, AF060790<br />

Nocardia africana, AF430054<br />

Nocardia elegans, AJ854057<br />

Nocardia vaccinii, AF430045<br />

Nocardia vermiculata, AB126873<br />

Nocardia shimofusensis, AB108775<br />

Nocardia higoensis, AB108778<br />

Nocardia puris, AJ508748<br />

Nocardia farcinica, Z36936<br />

Nocardia asiatica, AB092566<br />

Nocardia beijingensis, AF154129<br />

Nocardia araoensis, AB108779<br />

Nocardia arthritidis, AB108781<br />

Streptomyces gardneri, AB184754, Streptomycetaceae<br />

Nocardia pneumoniae, AB108780<br />

Nocardia amamiensis, AB275164<br />

Rhodococcus corynebacterioides, AF430066, Nocardiaceae<br />

Rhodococcus kroppenstedtii, AY726605, Nocardiaceae<br />

Rhodococcus koreensis, AF124342, Nocardiaceae<br />

Rhodococcus imtechensis, AY525785, Nocardiaceae<br />

Rhodococcus wratislaviensis, Z37138, Nocardiaceae<br />

Rhodococcus opacus, X80630, Nocardiaceae<br />

Rhodococcus percolatus, X92114, Nocardiaceae<br />

Rhodococcus marinonascens, X80617, Nocardiaceae<br />

Rhodococcus jostii, AB046357, Nocardiaceae<br />

Rhodococcus maanshanensis, AF416566, Nocardiaceae<br />

Rhodococcus tukisamuensis, AB067734, Nocardiaceae<br />

Rhodococcus erythropolis, X79289, Nocardiaceae<br />

Rhodococcus qingshengii, DQ090961, Nocardiaceae

---

Rhodococcus qingshengii, DQ090961, Nocardiaceae<br />

Rhodococcus baikonurensis, AB071951, Nocardiaceae<br />

Rhodococcus globerulus, X80619, Nocardiaceae<br />

Rhodococcus kyotonensis, AB269261, Nocardiaceae<br />

Rhodococcus yunnanensis, AY602219, Nocardiaceae<br />

Rhodococcus fascians, X79186, Nocardiaceae<br />

Rhodococcus triatomae, AJ854055, Nocardiaceae<br />

Rhodococcus rhodnii, X80621, Nocardiaceae<br />

Smaragdicoccus niigatensis, AB243007, Nocardiaceae, type sp.<br />

Rhodococcus equi, AF490539, Nocardiaceae<br />

Segniliparaceae (2:0)<br />

Segniliparus rotundus, AY608918, type sp.<br />

Segniliparus rugosus, AY608920<br />

Amycolatopsis lexingtonensis, AY183358, Pseudonocardiaceae<br />

Amycolatopsis pretoriensis, AY183356, Pseudonocardiaceae<br />

Amycolatopsis rifamycinica, AY083603, Pseudonocardiaceae<br />

Amycolatopsis kentuckyensis, AY183357, Pseudonocardiaceae<br />

Amycolatopsis mediterranei, AJ293754, Pseudonocardiaceae<br />

Amycolatopsis australiensis, AY129753, Pseudonocardiaceae<br />

Amycolatopsis balhimycina, AJ508239, Pseudonocardiaceae<br />

Amycolatopsis plumensis, AY262825, Pseudonocardiaceae<br />

Amycolatopsis tolypomycina, AJ293757, Pseudonocardiaceae<br />

Amycolatopsis vancoresmycina, AJ508240, Pseudonocardiaceae<br />

Amycolatopsis benzoatilytica, AY957506, Pseudonocardiaceae<br />

Amycolatopsis niigatensis, AB248537, Pseudonocardiaceae<br />

Amycolatopsis albidoflavus, AJ252832, Pseudonocardiaceae<br />

Amycolatopsis echigonensis, AB248535, Pseudonocardiaceae<br />

Amycolatopsis halotolerans, DQ000196, Pseudonocardiaceae<br />

Amycolatopsis rubida, AF222022, Pseudonocardiaceae<br />

Amycolatopsis japonica, AJ508236, Pseudonocardiaceae<br />

Amycolatopsis lurida, AJ293755, Pseudonocardiaceae<br />

Amycolatopsis decaplanina, AJ508237, Pseudonocardiaceae<br />

Amycolatopsis orientalis, AJ400711, Pseudonocardiaceae, type sp.<br />

Amycolatopsis regifaucium, AY129760, Pseudonocardiaceae<br />

Amycolatopsis keratiniphila subsp. nogabecina, AJ508238, Pseudonocardiaceae<br />

Amycolatopsis keratiniphila subsp. keratiniphila, AJ278496, Pseudonocardiaceae<br />

Amycolatopsis azurea, AJ400709, Pseudonocardiaceae<br />

Amycolatopsis coloradensis, AJ293753, Pseudonocardiaceae<br />

Amycolatopsis alba, AF051340, Pseudonocardiaceae<br />

Amycolatopsis jejuensis, DQ000200, Pseudonocardiaceae<br />

Amycolatopsis sulphurea, AJ293756, Pseudonocardiaceae<br />

Amycolatopsis saalfeldensis, DQ792500, Pseudonocardiaceae<br />

Amycolatopsis nigrescens, DQ486888, Pseudonocardiaceae<br />

Amycolatopsis minnesotensis, DQ076482, Pseudonocardiaceae<br />

Amycolatopsis palatopharyngis, AF479268, Pseudonocardiaceae<br />

Amycolatopsis sacchari, AF223354, Pseudonocardiaceae<br />

<strong>The</strong>rmocrispum agreste, X79183, Pseudonocardiaceae<br />

<strong>The</strong>rmocrispum municipale, X79184, Pseudonocardiaceae, type sp.<br />

Amycolatopsis methanolica, AJ249135, Pseudonocardiaceae<br />

Amycolatopsis thermoflava, AF052390, Pseudonocardiaceae<br />

Amycolatopsis eurytherma, AJ000285, Pseudonocardiaceae<br />

Amycolatopsis taiwanensis, DQ160215, Pseudonocardiaceae<br />

Saccharomonospora glauca, Z38003, Pseudonocardiaceae<br />

Saccharomonospora viridis, Z38007, Pseudonocardiaceae, type sp.<br />

Saccharomonospora cyanea, Z38018, Pseudonocardiaceae<br />

Saccharomonospora xinjiangensis, AJ306300, Pseudonocardiaceae<br />

Saccharomonospora azurea, Z38017, Pseudonocardiaceae<br />

Prauserella halophila, AF466190, Pseudonocardiaceae<br />

Prauserella alba, AF435077, Pseudonocardiaceae<br />

Prauserella rugosa, AF051342, Pseudonocardiaceae, type sp.<br />

Saccharomonospora halophila, AJ278497, Pseudonocardiaceae<br />

Saccharomonospora paurometabolica, AF540959, Pseudonocardiaceae<br />

Actinopolyspora iraqiensis, EF372523, Pseudonocardiaceae<br />

Saccharopolyspora hirsuta subsp. hirsuta, DQ381814, Pseudonocardiaceae, type sp.<br />

Saccharopolyspora thermophila, AF127526, Pseudonocardiaceae<br />

Saccharopolyspora spinosa, AF002818, Pseudonocardiaceae<br />

Saccharopolyspora flava, AF154128, Pseudonocardiaceae<br />

Saccharopolyspora spinosporotrichia, Y09571, Pseudonocardiaceae<br />

Saccharopolyspora taberi, AF002819, Pseudonocardiaceae<br />

Saccharopolyspora gregorii, X76962, Pseudonocardiaceae<br />

Actinopolyspora halophila, X54287, Pseudonocardiaceae, type sp.<br />

Actinopolyspora mortivallis, DQ883812, Pseudonocardiaceae<br />

Pseudonocardia ammonioxydans, AY500143, Pseudonocardiaceae<br />

Pseudonocardia kongjuensis, AJ252833, Pseudonocardiaceae<br />

Pseudonocardia autotrophica, AJ252824, Pseudonocardiaceae<br />

Pseudonocardia compacta, AJ252825, Pseudonocardiaceae<br />

Pseudonocardia nitrificans, X55609, Pseudonocardiaceae<br />

Pseudonocardia antarctica, AJ576010, Pseudonocardiaceae<br />

Pseudonocardia alni, AJ252823, Pseudonocardiaceae<br />

Pseudonocardia spinosispora, AJ249206, Pseudonocardiaceae<br />

Pseudonocardia yunnanensis, AJ252822, Pseudonocardiaceae<br />

Pseudonocardia asaccharolytica, Y08536, Pseudonocardiaceae<br />

Pseudonocardia saturnea, AJ252829, Pseudonocardiaceae<br />

Pseudonocardia petroleophila, AJ252828, Pseudonocardiaceae<br />

Pseudonocardia zijingensis, AF325725, Pseudonocardiaceae<br />

Pseudonocardia chloroethenivorans, AF454510, Pseudonocardiaceae<br />

Pseudonocardia benzenivorans, AJ556156, Pseudonocardiaceae<br />

Pseudonocardia dioxanivorans, AY340622, Pseudonocardiaceae<br />

Pseudonocardia tetrahydrofuranoxydans, AJ249200, Pseudonocardiaceae<br />

Pseudonocardia halophobica, AJ252827, Pseudonocardiaceae<br />

Pseudonocardia oroxyli, DQ343154, Pseudonocardiaceae<br />

Pseudonocardia sulfidoxydans, Y08537, Pseudonocardiaceae<br />

Pseudonocardia hydrocarbonoxydans, AJ252826, Pseudonocardiaceae<br />

Kibdelosporangium aridum subsp. largum, AJ512463, Pseudonocardiaceae<br />

Kibdelosporangium philippinense, AJ512464, Pseudonocardiaceae<br />

Kibdelosporangium aridum subsp. aridum, AJ311174, Pseudonocardiaceae, type sp.<br />

Streptoalloteichus hindustanus, D85497, Pseudonocardiaceae, type sp.<br />

Actinosynnemataceae (33:0)<br />

Saccharothrix syringae, AF114812<br />

Saccharothrix xinjiangensis, AY135693

---

Saccharothrix coeruleofusca, AF114805<br />

Saccharothrix algeriensis, AY054972<br />

Saccharothrix australiensis, AF114803, type sp.<br />

Saccharothrix mutabilis subsp. capreolus, X76965<br />

Saccharothrix mutabilis subsp. mutabilis, X76966<br />

Saccharothrix espanaensis, AF114807<br />

Saccharothrix texasensis, AF114814<br />

Saccharothrix longispora, AF114809<br />

Actinosynnema mirum, AF328679, type sp.<br />

Actinosynnema pretiosum subsp. auranticum, AB303364<br />

Actinosynnema pretiosum subsp. pretiosum, AF114800<br />

Lentzea albidocapillata, AJ242634, type sp.<br />

Lentzea violacea, AJ242633<br />

Lentzea flaviverrucosa, AF183957<br />

Lentzea californiensis, AF174435<br />

Lentzea waywayandensis, AB020029<br />

Lentzea albida, AB006176<br />

Lentzea kentuckyensis, DQ291145<br />

Lechevalieria fradiae, AY114175<br />

Kibdelosporangium albatum, AJ512462, Pseudonocardiaceae<br />

Lechevalieria flava, AF114808<br />

Lechevalieria aerocolonigenes, AF114804, type sp.<br />

Lechevalieria xinjiangensis, DQ898283<br />

Actinokineospora enzanensis, AB058395<br />

Actinokineospora inagensis, AF114799<br />

Actinokineospora riparia, AF114802, type sp.<br />

Actinokineospora auranticolor, AB058396<br />

Actinokineospora diospyrosa, AF114797<br />

Actinokineospora globicatena, AF114798<br />

Actinokineospora terrae, AB058394<br />

Umezawaea tangerina, AB020031, type sp.<br />

Kutzneria albida, EF543522, Pseudonocardiaceae<br />

Kutzneria viridogrisea, U58530, Pseudonocardiaceae, type sp.<br />

Kutzneria kofuensis, AF114801, Pseudonocardiaceae<br />

Actinoalloteichus cyanogriseus, AB006178, Pseudonocardiaceae, type sp.<br />

Actinoalloteichus spitiensis, AY426714, Pseudonocardiaceae<br />

Actinoalloteichus hymeniacidonis, DQ144222, Pseudonocardiaceae<br />

Goodfellowia coeruleoviolacea, DQ093349, Pseudonocardiaceae, type sp.<br />

Crossiella cryophila, AF114806, Pseudonocardiaceae, type sp.<br />

Crossiella equi, AF245017, Pseudonocardiaceae<br />

Streptosporangiaceae (68:0)<br />

Nonomuraea bangladeshensis, AB274966<br />

Nonomuraea coxensis, AB274967<br />

Nonomuraea fastidiosa, U48844<br />

Nonomuraea maheshkhaliensis, AB290014<br />

Nonomuraea kuesteri, AJ746362<br />

Nonomuraea longicatena, AB018787<br />

Nonomuraea salmonea, X97892<br />

Nonomuraea turkmeniaca, AF277201<br />

Nonomuraea ferruginea, U48845<br />

Nonomuraea spiralis, U48983<br />

Nonomuraea helvata, U48975<br />

Nonomuraea polychroma, U48977<br />

Nonomuraea roseoviolacea subsp. carminata, AB039961<br />

Nonomuraea roseoviolacea subsp. roseoviolacea, AB039959<br />

Nonomuraea rubra, AF277200<br />

Nonomuraea angiospora, U48843<br />

Nonomuraea pusilla, D85491, type sp.<br />

Nonomuraea africana, U48842<br />

Nonomuraea recticatena, U48979<br />

Nonomuraea dietziae, AB006156<br />

Nonomuraea roseola, AJ278221<br />

Sphaerisporangium viridialbum, X89953<br />

Sphaerisporangium melleum, AB208714<br />

Sphaerisporangium rubeum, AB208718<br />

Sphaerisporangium cinnabarinum, X89939<br />

Streptosporangium purpuratum, AF191735<br />

Streptosporangium yunnanense, AF191733<br />

Streptosporangium vulgare, U48999<br />

Streptosporangium longisporum, X89944<br />

Streptosporangium amethystogenes subsp. amethystogenes, X89935<br />

Streptosporangium album, X89934<br />

Streptosporangium roseum, X89947, type sp.<br />

Streptosporangium subroseum, AF191734<br />

Streptosporangium carneum, X89938<br />

Streptosporangium violaceochromogenes, U48997<br />

Streptosporangium nondiastaticum, X89945<br />

Streptosporangium pseudovulgare, X89946<br />

Streptosporangium fragile, U48992<br />

Planobispora longispora, D85494, type sp.<br />

Planobispora rosea, AB028654<br />

Planomonospora venezuelensis, AB028655<br />

Planomonospora alba, AB062381<br />

Planomonospora parontospora subsp. antibiotica, AB028653<br />

Planomonospora sphaerica, AB062382<br />

Planomonospora parontospora subsp. parontospora, D85495, type sp.<br />

Microbispora chromogenes, U48989<br />

Microbispora diastatica, U48990<br />

Microbispora thermorosea, U48987<br />

Microbispora corallina, AB018046<br />

Microbispora karnatakensis, AY445647<br />

Microbispora thermodiastatica, U48986<br />

Microbispora rosea subsp. aerata, U48984<br />

Microbispora parva, U48985<br />

Microbispora amethystogenes, U48988<br />

Microbispora rosea subsp. rosea, D86936, type sp.<br />

Microbispora mesophila, AF002266<br />

Microtetraspora fusca, U48973<br />

Microtetraspora niveoalba, U48976<br />

Microtetraspora glauca, X97891, type sp.<br />

Microtetraspora malaysiensis, AB062383

---

Microtetraspora malaysiensis, AB062383<br />

Planotetraspora silvatica, AB112082<br />

Planotetraspora mira, D85496, type sp.<br />

Acrocarpospora pleiomorpha, AB006174, type sp.<br />

Acrocarpospora macrocephala, AB025318<br />

Acrocarpospora corrugata, AB188150<br />

Herbidospora cretacea, D85485, type sp.<br />

Streptosporangium claviforme, X89940<br />

<strong>The</strong>rmopolyspora flexuosa, AY039253, type sp.<br />

<strong>The</strong>rmomonospora chromogena, AF116558, <strong>The</strong>rmomonosporaceae<br />

<strong>The</strong>rmobispora bispora, U58523, Pseudonocardiaceae, type sp.<br />

Nocardiopsaceae (31:0)<br />

Nocardiopsis metallicus, AJ420769<br />

Nocardiopsis exhalans, AY028325<br />

Nocardiopsis prasina, X97884<br />

Nocardiopsis alkaliphila, AY230848<br />

Nocardiopsis listeri, X97887<br />

Nocardiopsis tropica, AF105971<br />

Nocardiopsis umidischolae, AY036001<br />

Nocardiopsis alba, X97883<br />

Nocardiopsis aegyptia, AJ539401<br />

Nocardiopsis lucentensis, X97888<br />

Nocardiopsis synnemataformans, Y13593<br />

Streptomyces flavidofuscus, AB184655, Streptomycetaceae<br />

Nocardiopsis dassonvillei subsp. dassonvillei, X97886, type sp.<br />

Nocardiopsis dassonvillei subsp. albirubida, X97882<br />

Nocardiopsis halotolerans, AJ290448<br />

Nocardiopsis kunsanensis, AF195412<br />

Nocardiopsis xinjiangensis, AF251709<br />

Nocardiopsis salina, AY373031<br />

Nocardiopsis composta, AF360734<br />

Nocardiopsis baichengensis, AY619716<br />

Nocardiopsis halophila, AJ421018<br />

Nocardiopsis chromatogenes, AY619715<br />

Nocardiopsis rhodophaea, AY619714<br />

Nocardiopsis rosea, AY619713<br />

Nocardiopsis gilva, AY619712<br />

Nocardiopsis trehalosi, AF105972<br />

Streptomonospora alba, AF462347<br />

Streptomonospora salina, AF178988, type sp.<br />

<strong>The</strong>rmobifida cellulosilytica, AJ298058<br />

<strong>The</strong>rmobifida fusca, AF028245<br />

<strong>The</strong>rmobifida alba, AF002260, type sp.<br />

<strong>The</strong>rmomonosporaceae (45:0)<br />

Actinomadura luteofluorescens, U49008<br />

Actinomadura verrucosospora, U49011<br />

Actinomadura macra, U49009<br />

Actinomadura coerulea, U49002<br />

Actinomadura cremea subsp. cremea, AF134067<br />

Actinomadura cremea subsp. rifamycini, U49003<br />

Actinomadura pelletieri, AJ293710<br />

Actinomadura citrea, AJ420139<br />

Actinomadura mexicana, AF277195<br />

Actinomadura formosensis, AJ293703<br />

Actinomadura madurae, X97889, type sp.<br />

Actinomadura latina, AY035998<br />

Actinomadura spadix, AF163120<br />

Actinomadura alba, DQ985164<br />

Actinomadura echinospora, AJ420135<br />

Actinomadura umbrina, AJ293713<br />

<strong>The</strong>rmomonospora curvata, D86945, type sp.<br />

Actinomadura catellatispora, AF154127<br />

Actinomadura livida, AJ293706<br />

Actinomadura hallensis, DQ076484<br />

Actinomadura vinacea, AF134070<br />

Actinomadura viridis, AJ420141<br />

Actinomadura yumaensis, AF163122<br />

Actinomadura atramentaria, U49000<br />

Actinomadura rugatobispora, U49010<br />

Actinomadura meyerae, AY273787<br />

Actinomadura napierensis, AY568292<br />

Actinomadura kijaniata, X97890<br />

Actinomadura namibiensis, AJ420134<br />

Actinomadura hibisca, AJ293705<br />

Actinomadura oligospora, AF163118<br />

Actinomadura viridilutea, D86943<br />

Actinomadura nitritigenes, AY035999<br />

Actinomadura fibrosa, AJ293702<br />

Actinocorallia aurantiaca, AJ293701<br />

Actinocorallia libanotica, U49007<br />

Actinocorallia herbida, D85473, type sp.<br />

Actinocorallia aurea, AB006177<br />

Actinocorallia glomerata, AJ293704<br />

Actinocorallia longicatena, AJ293707<br />

Actinocorallia cavernae, AY966427<br />

Spirillospora rubra, AF163123<br />

Actinomadura rudentiformis, DQ285420<br />

Actinomadura fulvescens, AJ420137<br />

Spirillospora albida, D85498, type sp.<br />

Glycomycetaceae (8:0)<br />

Glycomyces lechevalierae, AY462041<br />

Glycomyces rutgersensis, AJ293748<br />

Glycomyces algeriensis, AY462044<br />

Glycomyces harbinensis, D85483, type sp.<br />

Glycomyces sambucus, DQ460469<br />

Glycomyces arizonensis, AY462042<br />

Glycomyces tenuis, D85482<br />

Stackebrandtia nassauensis, AY650268, type sp.

---

Actinocatenispora thailandica, AB107233, Micromonosporaceae, type sp.<br />

Actinocatenispora sera, AB263096, Micromonosporaceae<br />

Micromonosporaceae (91:0)<br />

Micromonospora echinospora, X92607<br />

Micromonospora fulviviridis, X92620<br />

Micromonospora inyonensis, X92629<br />

Micromonospora rosaria, X92631<br />

Micromonospora sagamiensis, X92624<br />

Micromonospora inositola, X92610<br />

Micromonospora echinaurantiaca, X92618<br />

Micromonospora pallida, X92608<br />

Micromonospora viridifaciens, X92623<br />

Micromonospora nigra, X92609<br />

Micromonospora citrea, X92617<br />

Micromonospora coerulea, X92598<br />

Micromonospora coriariae, AJ784008<br />

Micromonospora echinofusca, X92625<br />

Micromonospora peucetia, X92603<br />

Micromonospora chersina, X92628<br />

Micromonospora aurantiaca, X92604<br />

Micromonospora chalcea, X92594, type sp.<br />

Micromonospora purpureochromogenes, X92611<br />

Micromonospora carbonacea, X92599<br />

Micromonospora halophytica, X92601<br />

Micromonospora coxensis, AB241455<br />

Micromonospora chokoriensis, AB241454<br />

Micromonospora saelicesensis, AJ783993<br />

Micromonospora lupini, AJ783996<br />

Micromonospora mirobrigensis, AJ626950<br />

Micromonospora siamensis, AB193565<br />

Micromonospora matsumotoense, AF152109<br />

Micromonospora eburnea, AB107231<br />

Micromonospora endolithica, AJ560635<br />

Micromonospora auratinigra, AB159779<br />

Dactylosporangium fulvum, X93192<br />

Dactylosporangium roseum, X93194<br />

Dactylosporangium thailandense, X92630<br />

Dactylosporangium matsuzakiense, X93193<br />

Dactylosporangium vinaceum, X93196<br />

Dactylosporangium aurantiacum, X93191, type sp.<br />

Virgisporangium aurantiacum, AB006169<br />

Virgisporangium ochraceum, AB006167, type sp.<br />

Polymorphospora rubra, AB223089, type sp.<br />

Actinoplanes cyaneus, AB036997<br />

Actinoplanes liguriensis, AJ865471<br />

Actinoplanes missouriensis, AJ277572<br />

Actinoplanes derwentensis, AB036999<br />

Actinoplanes rectilineatus, AB037010<br />

Actinoplanes couchii, AM400230<br />

Actinoplanes italicus, AB037005<br />

Actinoplanes palleronii, AJ277573<br />

Actinoplanes auranticolor, U58526<br />

Actinoplanes lobatus, AB037006<br />

Actinoplanes campanulatus, AB036995<br />

Actinoplanes capillaceus, AB013495<br />

Actinoplanes philippinensis, U58525, type sp.<br />

Actinoplanes utahensis, AJ277574<br />

Actinoplanes regularis, X93188<br />

Actinoplanes consettensis, AB036996<br />

Actinoplanes humidus, AB037004<br />

Actinoplanes digitatis, AB037000<br />

Actinoplanes deccanensis, AJ277565<br />

Actinoplanes brasiliensis, X93185<br />

Actinoplanes teichomyceticus, AB047513<br />

Couchioplanes caeruleus subsp. azureus, X93202<br />

Couchioplanes caeruleus subsp. caeruleus, D85479, type sp.<br />

Krasilnikovia cinnamomea, AB236956<br />

Spirilliplanes yamanashiensis, D63912, type sp.<br />

Catenuloplanes atrovinosus, AJ294716<br />

Catenuloplanes japonicus, X93201, type sp.<br />

Catenuloplanes indicus, AJ294717<br />

Catenuloplanes crispus, AB024701<br />

Verrucosispora gifhornensis, Y15523, type sp.<br />

Micromonospora olivasterospora, X92613<br />

Asanoa iriomotensis, AB112081<br />

Asanoa ishikariensis, AJ294715<br />

Asanoa ferruginea, AF152108, type sp.<br />

Salinispora arenicola, AY040619, type sp.<br />

Salinispora tropica, AY040617<br />

Actinoplanes durhamensis, AJ277568<br />

Actinoplanes ferrugineus, AJ277569<br />

Actinoplanes globisporus, AB048219<br />

Longispora albida, AB089241, type sp.<br />

Pilimelia anulata, X93189<br />

Pilimelia terevasa, X93190, type sp.<br />

Catellatospora chokoriensis, AB200231<br />

Catellatospora methionotrophica, AF152107<br />

Catellatospora citrea, AF152106, type sp.<br />

Catellatospora coxensis, AB200232<br />

Catellatospora koreensis, AF171700<br />

Catellatospora tsunoense, AF152110<br />

Catellatospora bangladeshensis, AB200233<br />

Luedemannella flava, AB236959<br />

Luedemannella helvata, AB236957, type sp.<br />

Nocardioidaceae (33:0)<br />

Nocardioides albus, AF004988, type sp.<br />

Nocardioides luteus, AF005007<br />

Nocardioides marinus, DQ401093<br />

Nocardioides insulae, DQ786794<br />

Nocardioides panacihumi, AB271053

---

Nocardioides panacihumi, AB271053<br />

Nocardioides aestuarii, AY423719<br />

Nocardioides aromaticivorans, AB087721<br />

Pimelobacter simplex, AF005009, type sp.<br />

Nocardioides nitrophenolicus, AF005024<br />

Nocardioides kongjuensis, DQ218275<br />

Nocardioides exalbidus, AB273624<br />

Nocardioides oleivorans, AJ698724<br />

Nocardioides ganghwensis, AY423718<br />

Nocardioides furvisabuli, DQ411542<br />

Nocardioides terrigena, EF363712<br />

Nocardioides aquiterrae, AF529063<br />

Nocardioides pyridinolyticus, U61298<br />

Nocardioides marinisabuli, AM422448<br />

Nocardioides plantarum, AF005008<br />

Nocardioides aquaticus, X94145<br />

Nocardioides kribbensis, AY835924<br />

Nocardioides lentus, DQ121389<br />

Nocardioides alkalitolerans, AY633969<br />

Nocardioides dubius, AY928902<br />

Marmoricola aequoreus, AM295338<br />

Marmoricola aurantiacus, Y18629, type sp.<br />

Nocardioides jensenii, AF005006<br />

Aeromicrobium fastidiosum, AF005022<br />

Aeromicrobium marinum, AY166703<br />

Aeromicrobium panaciterrae, AB245387<br />

Aeromicrobium alkaliterrae, AY822044<br />

Aeromicrobium tamlense, DQ411541<br />

Aeromicrobium erythreum, AF005021, type sp.<br />

Propionibacteriaceae (21:0)<br />

Propionibacterium acidipropionici, AJ704570<br />

Propionibacterium microaerophilum, AF234623<br />

Propionibacterium jensenii, AJ704571<br />

Propionibacterium thoenii, AJ704572<br />

Propionibacterium granulosum, AJ003057<br />

Propionibacterium avidum, AJ003055<br />

Propionibacterium propionicum, AJ003058<br />

Propionibacterium acnes, AB042288<br />

Propionibacterium australiense, AF225962<br />

Propionibacterium cyclohexanicum, D82046<br />

Propionibacterium freudenreichii subsp. shermanii, Y10819<br />

Propionibacterium freudenreichii subsp. freudenreichii, X53217, type sp.<br />

Brooklawnia cerclae, DQ196625, type sp.<br />

Propionimicrobium lymphophilum, AJ003056, type sp.<br />

Tessaracoccus bendigoensis, AF038504, type sp.<br />

Aestuariimicrobium kwangyangense, DQ830982, type sp.<br />

Luteococcus japonicus, D85487, type sp.<br />

Luteococcus sanguinis, AJ416758<br />

Luteococcus peritonei, AJ132334<br />

Granulicoccus phenolivorans, AY566575, type sp.<br />

Propioniferax innocua, AF227165, type sp.<br />

Micropruina glycogenica, AB012607, Nocardioidaceae, type sp.<br />

Propionicicella superfundia, DQ176646, Nocardioidaceae, type sp.<br />

Friedmanniella antarctica, Z78206, Nocardioidaceae, type sp.<br />

Friedmanniella spumicola, AF062535, Nocardioidaceae<br />

Friedmanniella capsulata, AF084529, Nocardioidaceae<br />

Friedmanniella lacustris, AJ132943, Nocardioidaceae<br />

Microlunatus ginsengisoli, AB245389, Propionibacteriaceae<br />

Microlunatus phosphovorus, Z78207, Propionibacteriaceae, type sp.<br />

Kribbella aluminosa, EF126967, Nocardioidaceae<br />

Kribbella swartbergensis, AY995147, Nocardioidaceae<br />

Kribbella jejuensis, AY253866, Nocardioidaceae<br />

Kribbella solani, AY253862, Nocardioidaceae<br />

Kribbella karoonensis, AY995146, Nocardioidaceae<br />

Kribbella sandramycini, AY253864, Nocardioidaceae<br />

Kribbella yunnanensis, AY082061, Nocardioidaceae<br />

Kribbella antibiotica, AY082063, Nocardioidaceae<br />

Kribbella koreensis, Y09159, Nocardioidaceae<br />

Kribbella alba, AY082062, Nocardioidaceae<br />

Kribbella lupini, AJ811962, Nocardioidaceae<br />

Kribbella flavida, AY253863, Nocardioidaceae, type sp.<br />

Actinopolymorpha singaporensis, AF237815, Nocardioidaceae, type sp.<br />

Jiangella gansuensis, AY631071, Propionibacteriaceae, type sp.<br />

Acidothermus cellulolyticus, CP000481, Acidothermaceae, type sp.<br />

Acidimicrobium ferrooxidans, U75647, Acidimicrobiaceae, type sp.<br />

Coriobacteriaceae (19:0)<br />

Eggerthella hongkongensis, AY288517<br />

Eggerthella sinensis, AY321958<br />

Eggerthella lenta, AF292375, type sp.<br />

Denitrobacterium detoxificans, U43492, type sp.<br />

Cryptobacterium curtum, AB019260, type sp.<br />

Slackia exigua, AF101240, type sp.<br />

Slackia heliotrinireducens, AF101241<br />

Slackia faecicanis, AJ608686<br />

Collinsella intestinalis, AB031063<br />

Collinsella stercoris, AB031061<br />

Collinsella aerofaciens, AB011816, type sp.<br />

Coriobacterium glomerans, X79048, type sp.<br />

Atopobium fossor, L34620<br />

Atopobium minutum, X67148, type sp.<br />

Atopobium parvulum, X67150<br />

Atopobium rimae, AF292371<br />

Atopobium vaginae, Y17195<br />

Olsenella profusa, AF292374<br />

Olsenella uli, AF292373, type sp.<br />

Conexibacter woesei, AJ440237, Conexibacteraceae, type sp.<br />

Patulibacter minatonensis, AB193261, Patulibacteraceae, type sp.<br />

Solirubrobacteraceae (2:0)<br />

Solirubrobacter pauli, AY039806, type sp.

---

Solirubrobacter pauli, AY039806, type sp.<br />

Solirubrobacter soli, AB245334<br />

<strong>The</strong>rmoleophilaceae (2:0)<br />

<strong>The</strong>rmoleophilum album, AJ458462, type sp.<br />

<strong>The</strong>rmoleophilum minutum, AJ458464<br />

Rubrobacteraceae (3:0)<br />

Rubrobacter radiotolerans, U65647, type sp.<br />

Rubrobacter taiwanensis, AF465803<br />

Rubrobacter xylanophilus , CP000386<br />

Chloroflexi (15:0)<br />

Chloroflexi (7:0)<br />

Chloroflexaceae (3:0)<br />

Chloroflexus aggregans , AAUI01000026<br />

Chloroflexus aurantiacus, D38365, type sp.<br />

Roseiflexus castenholzii , ARB_A1C5521A, type sp.<br />

Herpetosiphonaceae (2:0)<br />

Herpetosiphon geysericola, AF039293<br />

Herpetosiphon aurantiacus, ARB_6C316FA3, type sp.<br />

Sphaerobacter thermophilus, AJ420142, Sphaerobacteraceae, type sp.<br />

<strong>The</strong>rmomicrobium roseum, M34115, <strong>The</strong>rmomicrobia, type sp.<br />

Ktedonobacter racemifer, AM180156, Unclassified Bacteria, type sp.<br />

Anaerolineae and Caldilineae (7:0)<br />

Anaerolineaceae (6:0)<br />

Bellilinea caldifistulae, AB243672, type sp.<br />

Levilinea saccharolytica, AB109439, type sp.<br />

Leptolinea tardivitalis, AB109438, type sp.<br />

Longilinea arvoryzae, AB243673, type sp.<br />

Anaerolinea thermophila, AB046413, type sp.<br />

Anaerolinea thermolimosa, AB109437<br />

Caldilinea aerophila, AB067647, Caldilineae, type sp.<br />

<strong>The</strong>rmaerobacter nagasakiensis, AB061441, Syntrophomonadaceae<br />

<strong>The</strong>rmaerobacter subterraneus, AF343566, Syntrophomonadaceae<br />

<strong>The</strong>rmaerobacter litoralis, AY936496, Syntrophomonadaceae<br />

<strong>The</strong>rmaerobacter marianensis, AB011495, Syntrophomonadaceae, type sp.<br />

Deinococcus-<strong>The</strong>rmus (45:0)<br />

Deinococcaceae (26:0)<br />

Deinococcus ficus, AY941086<br />

Deinococcus mumbaiensis, DQ003135<br />

Deinococcus yunweiensis, DQ344634<br />

Deinococcus grandis, Y11329<br />

Deinococcus hohokamensis, AY743256<br />

Deinococcus navajonensis, AY743259<br />

Deinococcus deserti, AY876378<br />

Deinococcus indicus, AJ549111<br />

Deinococcus radiodurans, Y11332, type sp.<br />

Deinococcus apachensis, AY743264<br />

Deinococcus geothermalis , CP000359<br />

Deinococcus murrayi, Y13041<br />

Deinococcus hopiensis, AY743262<br />

Deinococcus frigens, AJ585981<br />

Deinococcus saxicola, AJ585984<br />

Deinococcus marmoris, AJ585986<br />

Deinococcus radiopugnans, Y11334<br />

Deinococcus proteolyticus, Y11331<br />

Deinococcus radiophilus, Y11333<br />

Deinococcus sonorensis, AY743283<br />

Deinococcus maricopensis, AY743274<br />

Deinococcus cellulosilyticus, DQ883809<br />

Deinococcus papagonensis, AY743280<br />

Deinococcus yavapaiensis, AY743279<br />

Deinococcus peraridilitoris, EF141348<br />

Deinococcus pimensis, AY743277<br />

Truepera radiovictrix, DQ022076, Trueperaceae, type sp.<br />

<strong>The</strong>rmaceae (18:0)<br />

<strong>The</strong>rmus antranikianii, Y18411<br />

<strong>The</strong>rmus scotoductus, AF032127<br />

<strong>The</strong>rmus igniterrae, Y18406<br />

<strong>The</strong>rmus brockianus, Z15062<br />

<strong>The</strong>rmus aquaticus, L09663, type sp.<br />

<strong>The</strong>rmus thermophilus, X07998<br />

<strong>The</strong>rmus filiformis, L09667<br />

<strong>The</strong>rmus oshimai, Y18416<br />

Meiothermus ruber, Z15059, type sp.<br />

Meiothermus taiwanensis, AF418001<br />

Meiothermus cerbereus, Y13594<br />

Meiothermus chliarophilus, X84212<br />

Meiothermus timidus, AJ871168<br />

Meiothermus silvanus, X84211<br />

Marinithermus hydrothermalis, AB079382, type sp.<br />

Oceanithermus desulfurans, AB107956<br />

Oceanithermus profundus, AJ430586, type sp.<br />

Vulcanithermus mediatlanticus, AJ507298, type sp.<br />

Aquificae (20:0)<br />

Aquificaceae (7:0)<br />

Hydrogenobacter hydrogenophilus, Z30242<br />

Hydrogenobacter subterraneus, AB026268

---

<strong>The</strong>rmocrinis ruber, AJ005640, type sp.<br />

<strong>The</strong>rmocrinis albus, AJ278895<br />

Aquifex pyrophilus, M83548, type sp.<br />

Hydrogenivirga caldilitoris, AB120294, type sp.<br />

Hydrogenobaculum acidophilum, D16296, type sp.<br />

Persephonella hydrogeniphila, AB086419, Hydrogenothermaceae<br />

Persephonella marina, AF188332, Hydrogenothermaceae, type sp.<br />

Persephonella guaymasensis, AF385630, Hydrogenothermaceae<br />

Sulfurihydrogenibium azorense , AF528192, Hydrogenothermaceae<br />

Sulfurihydrogenibium subterraneum, AB071324, Hydrogenothermaceae, type sp.<br />

Sulfurihydrogenibium yellowstonense, AY686713, Hydrogenothermaceae<br />

Desulfurobacteriaceae (7:0)<br />

Desulfurobacterium atlanticum, AY268939<br />

Desulfurobacterium pacificum, AY268936<br />

Desulfurobacterium thermolithotrophum, AJ001049, type sp.<br />

<strong>The</strong>rmovibrio ruber, AJ316619, type sp.<br />

<strong>The</strong>rmovibrio guaymasensis, AY268937<br />

<strong>The</strong>rmovibrio ammonificans, AY263403<br />

Balnearium lithotrophicum, AB105049, type sp.<br />

<strong>The</strong>rmodesulfobacteria (5:0)<br />

<strong>The</strong>rmodesulfobacterium hveragerdense, X96725<br />

<strong>The</strong>rmodesulfobacterium thermophilum, AF334601<br />

<strong>The</strong>rmodesulfobacterium commune, AF418169, type sp.<br />

<strong>The</strong>rmodesulfobacterium hydrogeniphilum, AF332514<br />

<strong>The</strong>rmodesulfatator indicus, AF393376, type sp.<br />

Dethiosulfovibrio russensis, AF234542, Syntrophomonadaceae<br />

Dethiosulfovibrio marinus, AF234544, Syntrophomonadaceae<br />

Dethiosulfovibrio acidaminovorans, AY005466, Syntrophomonadaceae<br />

Dethiosulfovibrio peptidovorans, U52817, Syntrophomonadaceae, type sp.<br />

Jonquetella anthropi, EF436500, Unclassified Bacteria, type sp.<br />

Aminobacterium colombiense, AF069287, Syntrophomonadaceae, type sp.<br />

Aminobacterium mobile, AF073521, Syntrophomonadaceae<br />

Aminiphilus circumscriptus, AY642589, Syntrophomonadaceae, type sp.<br />

Synergistes jonesii, L08066, Unclassified Deferribacterales, type sp.<br />

<strong>The</strong>rmovirga lienii, DQ071273, Syntrophomonadaceae, type sp.<br />

Anaerobaculum mobile, AJ243189, Syntrophomonadaceae<br />

Anaerobaculum thermoterrenum, U50711, Syntrophomonadaceae, type sp.<br />

Coprothermobacter platensis, Y08935, <strong>The</strong>rmoanaerobacteriaceae<br />

Coprothermobacter proteolyticus, X69335, <strong>The</strong>rmoanaerobacteriaceae, type sp.<br />

<strong>The</strong>rmodesulfobium narugense, AB077817, <strong>The</strong>rmodesulfobiaceae, type sp.<br />

<strong>The</strong>rmotogae (28:0)<br />

Petrotoga mexicana, AY125964<br />

Petrotoga mobilis, Y15479<br />

Petrotoga halophila, AY800102<br />

Petrotoga olearia, AJ311703<br />

Petrotoga sibirica, AJ311702<br />

Geotoga subterranea, L10659<br />

Marinitoga okinawensis, AB262395<br />

Marinitoga piezophila, AF326121<br />

Marinitoga camini, AJ250439, type sp.<br />

Marinitoga hydrogenitolerans, AJ786363<br />

<strong>The</strong>rmosipho africanus, M83140, type sp.<br />

<strong>The</strong>rmosipho japonicus, AB024932<br />

<strong>The</strong>rmosipho atlanticus, AJ577471<br />

<strong>The</strong>rmosipho geolei, AJ272022<br />

<strong>The</strong>rmosipho melanesiensis, Z70248<br />

Fervidobacterium pennivorans, EF565822<br />

Fervidobacterium changbaicum, AY878719<br />

Fervidobacterium islandicum, M59176<br />

Fervidobacterium gondwanense, Z49117<br />

<strong>The</strong>rmotoga maritima, M21774, type sp.<br />

<strong>The</strong>rmotoga neapolitana, AB039768<br />

<strong>The</strong>rmotoga petrophila, AJ872269<br />

<strong>The</strong>rmotoga naphthophila, AJ872268<br />

<strong>The</strong>rmotoga elfii, X80790<br />

<strong>The</strong>rmotoga lettingae, AF355615<br />

<strong>The</strong>rmotoga subterranea, U22664<br />

<strong>The</strong>rmotoga hypogea, U89768<br />

<strong>The</strong>rmotoga thermarum, AB039769<br />

Archaea (257:0)<br />

Euryarchaeota (215:0)<br />

Halobacteria (88:0)<br />

Natrialba asiatica, D14123, type sp.<br />

Natrialba taiwanensis, D14124<br />

Natrialba aegyptia, AF251941<br />

Halostagnicola larsenii, AM117571, type sp.<br />

Natrialba chahannaoensis, AJ004806<br />

Natrialba hulunbeirensis, AF262026<br />

Natrialba magadii, X72495<br />

Natronorubrum bangense, Y14028, type sp.<br />

Natronorubrum sulfidifaciens, DQ535889<br />

Natronorubrum aibiense, DQ205516<br />

Natronorubrum tibetense, AB005656<br />

Natronolimnobius baerhuensis, AB125106, type sp.<br />

Natronolimnobius innermongolicus, AB125108<br />

Haloterrigena limicola, DQ367241<br />

Haloterrigena hispanica, AM285297<br />

Haloterrigena turkmenica, AB004878, type sp.<br />

Natrinema pallidum, AJ002949<br />

Natrinema pellirubrum, AJ002947, type sp.<br />

Halorubrum trapanicum, D14125<br />

Natrinema altunense, AY208972<br />

Haloterrigena longa, DQ367242<br />

Natrinema ejinorense, AM231733

---

Natrinema versiforme, AB023426<br />

Haloterrigena saccharevitans, AY820137<br />

Haloterrigena thermotolerans, AF115478<br />

Natronococcus jeotgali, EF077631<br />

Natronococcus occultus, Z28378, type sp.<br />

Natronococcus amylolyticus, D43628<br />

Natronobacterium gregoryi, D87970, type sp.<br />

Halobiforma haloterrestris, AF333760, type sp.<br />

Halobiforma lacisalsi, AY277582<br />

Halobiforma nitratireducens, AB045012<br />

Halopiger xanaduensis, AM268114, type sp.<br />

Halovivax asiaticus, AM039978, type sp.<br />

Halovivax ruber, AM269467<br />

Halococcus qingdaonensis, AY243109<br />

Halococcus thailandensis, AB220647<br />

Halococcus morrhuae, D11106, type sp.<br />

Halococcus dombrowskii, AJ420376<br />

Halococcus hamelinensis, DQ017835<br />

Halococcus saccharolyticus, AB004876<br />

Halococcus salifodinae, AB004877<br />

Halalkalicoccus jeotgali, EF077632<br />

Halalkalicoccus tibetensis, AF435112, type sp.<br />

Halorubrum distributum, D63572<br />

Halorubrum litoreum, EF028067<br />

Halorubrum coriense, S70839<br />

Halorubrum ezzemoulense, DQ118426<br />

Halorubrum xinjiangense, AY510707<br />

Halorubrum sodomense, D13379<br />

Halorubrum terrestre, AB090169<br />

Halorubrum ejinorense, AM491830<br />

Halorubrum arcis, DQ355793<br />

Halorubrum saccharovorum, U17364, type sp.<br />

Halorubrum aidingense, DQ355813<br />

Halorubrum lacusprofundi, U17365<br />

Halorubrum lipolyticum, DQ355814<br />

Halorubrum orientale, AM235786<br />

Halorubrum tibetense, AY149598<br />

Halorubrum alkaliphilum, AY510708<br />

Halorubrum vacuolatum, D87972<br />

Haloplanus natans, DQ417339, type sp.<br />

Haloferax alexandrinus, AB037474<br />

Haloferax gibbonsii, D13378<br />

Haloferax lucentense, AB081732<br />

Haloferax prahovense, AB258305<br />

Haloferax volcanii, AY425724, type sp.<br />

Haloferax denitrificans, D14128<br />

Haloferax mediterranei, D11107<br />

Haloferax sulfurifontis, AY458601<br />

Haloferax larsenii, AY838278<br />

Halogeometricum borinquense, AF002984, type sp.<br />

Haloquadratum walsbyi, AY676200, type sp.<br />

Haladaptatus paucihalophilus, DQ344973, type sp.<br />

Halobacterium jilantaiense, DQ256409<br />

Halobacterium salinarum, AJ496185, type sp.<br />

Halobacterium noricense, AJ548827<br />

Haloarcula marismortui, EF645693<br />

Haloarcula vallismortis, EF645688, type sp.<br />

Haloarcula quadrata, AB010964<br />

Haloarcula argentinensis, EF645681<br />

Haloarcula hispanica, AB090167<br />

Haloarcula amylolytica, DQ826513<br />

Haloarcula japonica, EF645685<br />

Halosimplex carlsbadense, AB072815, type sp.<br />

Halomicrobium mukohataei, EF645690, type sp.<br />

Halorhabdus utahensis, AF071880, type sp.<br />

Natronomonas pharaonis , CR936257, type sp.<br />

Methanomicrobia (44:0)<br />

Methanomicrobiales (24:0)<br />

Methanocalculus chunghsingensis, AF347025, Unclassified Methanomicrobiales<br />

Methanocalculus halotolerans, AF033672, Unclassified Methanomicrobiales, type sp.<br />

Methanocalculus taiwanensis, AF411470, Unclassified Methanomicrobiales<br />

Methanocalculus pumilus, AB008853, Unclassified Methanomicrobiales<br />

Methanocorpusculaceae (3:0)<br />

Methanocorpusculum bavaricum, AY196676<br />

Methanocorpusculum parvum, M59147, type sp.<br />

Methanocorpusculum labreanum, AY260436<br />

Methanofollis aquaemaris, AF262035, Methanomicrobiaceae<br />

Methanofollis formosanus, AY186542, Methanomicrobiaceae<br />

Methanofollis liminatans, Y16428, Methanomicrobiaceae<br />

Methanofollis tationis, AF095272, Methanomicrobiaceae, type sp.<br />

Methanoculleus marisnigri, M59134, Methanomicrobiaceae<br />

Methanoculleus submarinus, AF531178, Methanomicrobiaceae<br />

Methanoculleus chikugoensis, AB038795, Methanomicrobiaceae<br />

Methanoculleus bourgensis, AY196674, Methanomicrobiaceae, type sp.<br />

Methanoculleus thermophilus, AB065297, Methanomicrobiaceae<br />

Methanoculleus palmolei, Y16382, Methanomicrobiaceae<br />

Methanomicrobiaceae (6:0)<br />

Methanoplanus petrolearius, U76631<br />

Methanolacinia paynteri, AY196678, type sp.<br />

Methanomicrobium mobile, M59142, type sp.<br />

Methanoplanus limicola, M59143, type sp.<br />

Methanogenium marinum, DQ177344<br />

Methanogenium organophilum, M59131<br />

Methanospirillum hungatei, AY196683, Methanospirillaceae, type sp.<br />

Methanosarcinales (20:0)<br />

Methanosarcinaceae (17:0)

---

Methanosarcinaceae (17:0)<br />

Methanococcoides alaskense, AY941801<br />

Methanococcoides burtonii , CP000300<br />

Methanohalophilus mahii, M59133, type sp.<br />

Methanohalophilus portucalensis, AY290717<br />

Methanolobus taylorii, U20154<br />

Methanolobus vulcani, U20155<br />

Methanolobus oregonensis, U20152<br />

Methanomethylovorans hollandica, AF120163, type sp.<br />

Methanomethylovorans thermophila, AY672821<br />

Methanosarcina barkeri, AJ012094<br />

Methanosarcina thermophila, M59140<br />

Methanosarcina acetivorans, M59137<br />

Methanosarcina mazei, AJ012095<br />

Methanosarcina lacustris, AF432127<br />

Methanosarcina baltica, AJ238648<br />

Methanosarcina semesiae, AJ012742<br />

Methanimicrococcus blatticola, AJ238002, type sp.<br />

Methanosaeta harundinacea, AY817738, Methanosaetaceae<br />

Methanothrix thermophila, AB071701, Methanosaetaceae<br />

Methermicoccus shengliensis, DQ787474, Methermicoccaceae, type sp.<br />

Methanobacteria (30:0)<br />

Methanobrevibacter curvatus, U62533, Methanobacteriaceae<br />

Methanobrevibacter filiformis, U82322, Methanobacteriaceae<br />

Methanobrevibacter cuticularis, U41095, Methanobacteriaceae<br />

Methanobrevibacter arboriphilus, AY196665, Methanobacteriaceae<br />

Methanobrevibacter acididurans, AF242652, Methanobacteriaceae<br />

Methanobrevibacter millerae, AY196673, Methanobacteriaceae<br />

Methanobrevibacter thaueri, U55236, Methanobacteriaceae<br />

Methanobrevibacter gottschalkii, U55238, Methanobacteriaceae<br />

Methanobrevibacter smithii, U55233, Methanobacteriaceae<br />

Methanobrevibacter woesei, U55237, Methanobacteriaceae<br />

Methanobrevibacter ruminantium, AY196666, Methanobacteriaceae, type sp.<br />

Methanobrevibacter olleyae, AY615201, Methanobacteriaceae<br />

Methanobrevibacter wolinii, U55240, Methanobacteriaceae<br />

Methanosphaera stadtmanae , CP000102, Methanobacteriaceae, type sp.<br />

Methanobacterium formicicum, AF169245, Methanobacteriaceae, type sp.<br />

Methanobacterium palustre, AF093061, Methanobacteriaceae<br />

Methanobacterium subterraneum, X99044, Methanobacteriaceae<br />

Methanobacterium alcaliphilum, DQ649335, Methanobacteriaceae<br />

Methanobacterium bryantii, AY196657, Methanobacteriaceae<br />

Methanobacterium ivanovii, AF095261, Methanobacteriaceae<br />

Methanobacterium oryzae, AF028690, Methanobacteriaceae<br />

Methanobacterium beijingense, AY350742, Methanobacteriaceae<br />

Methanobacterium congolense, AF233586, Methanobacteriaceae<br />

Methanobacterium aarhusense, AY386124, Methanobacteriaceae<br />

Methanothermobacter thermoflexus, X99047, Methanobacteriaceae<br />

Methanothermobacter thermophilus, X99048, Methanobacteriaceae<br />

Methanothermobacter defluvii, X99046, Methanobacteriaceae<br />

Methanothermobacter thermautotrophicus, AY196660, Methanobacteriaceae, type sp.<br />

Methanothermobacter marburgensis, X15364, Methanobacteriaceae<br />

Methanothermobacter wolfeii, AB104858, Methanobacteriaceae<br />

Archaeoglobi (5:0)<br />

Archaeoglobus fulgidus , AE000782, type sp.<br />

Geoglobus ahangari, AF220165, type sp.<br />

Archaeoglobus veneficus, AF418181<br />

Archaeoglobus profundus, AJ299219<br />

Ferroglobus placidus, AF220166, type sp.<br />

Methanococci (10:0)<br />

Methanococcus aeolicus, DQ195164, Methanococcaceae<br />

Methanothermococcus okinawensis, AB057722, Methanococcaceae<br />

Methanococcus vannielii, AY196675, Methanococcaceae<br />

Methanothermococcus thermolithotrophicus, M59128, Methanococcaceae, type sp.<br />

Methanotorris formicicus, AB100884, Methanocaldococcaceae<br />

Methanocaldococcaceae (5:0)<br />

Methanocaldococcus indicus, AF547621<br />

Methanocaldococcus infernus, AF025822<br />

Methanocaldococcus vulcanius, AF051404<br />

Methanocaldococcus fervens, AF056938<br />

Methanocaldococcus jannaschii , L77117, type sp.<br />

<strong>The</strong>rmococci (32:0)<br />

<strong>The</strong>rmococcus barossii, AY099173<br />

<strong>The</strong>rmococcus celer, AY099174, type sp.<br />

<strong>The</strong>rmococcus hydrothermalis, AY099179<br />

<strong>The</strong>rmococcus thioreducens, AF394925<br />

<strong>The</strong>rmococcus coalescens, AB107767<br />

<strong>The</strong>rmococcus siculi, AY099185<br />

<strong>The</strong>rmococcus celericrescens, AB107768<br />

<strong>The</strong>rmococcus atlanticus, AJ310754<br />

<strong>The</strong>rmococcus stetteri, AY099186<br />

<strong>The</strong>rmococcus kodakarensis , D38650<br />

<strong>The</strong>rmococcus peptonophilus, AY099183<br />

<strong>The</strong>rmococcus waiotapuensis, AY099187<br />

<strong>The</strong>rmococcus zilligii, U76534<br />

<strong>The</strong>rmococcus pacificus, AY099182<br />

<strong>The</strong>rmococcus profundus, AY099184<br />

<strong>The</strong>rmococcus acidaminovorans, AY099170<br />

<strong>The</strong>rmococcus fumicolans, AY099176<br />

<strong>The</strong>rmococcus gammatolerans, AF479014<br />

<strong>The</strong>rmococcus gorgonarius, AY099177<br />

<strong>The</strong>rmococcus guaymasensis, AY099178<br />

Pyrococcus furiosus , AE010139, type sp.<br />

Pyrococcus horikoshii, AY099169<br />

Pyrococcus glycovorans, AY099168<br />

<strong>The</strong>rmococcus chitonophagus, AY099175

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<strong>The</strong>rmococcus barophilus, AY099172<br />

<strong>The</strong>rmococcus alcaliphilus, AB055121<br />

<strong>The</strong>rmococcus litoralis, Z70252<br />

<strong>The</strong>rmococcus sibiricus, AJ238992<br />

<strong>The</strong>rmococcus aegaeus, AY099171<br />

<strong>The</strong>rmococcus aggregans, Y08384<br />

Palaeococcus ferrophilus, AB019239, type sp.<br />

Palaeococcus helgesonii, AY134472<br />

Crenarchaeota (42:0)<br />

<strong>The</strong>rmoplasmata (6:0)<br />

Picrophilaceae (2:0)<br />

Picrophilus oshimae, X84901, type sp.<br />

Picrophilus torridus , AE017261<br />

Ferroplasma acidiphilum, AJ224936, Ferroplasmaceae, type sp.<br />

<strong>The</strong>rmoplasmataceae (2:0)<br />

<strong>The</strong>rmoplasma acidophilum, M38637, type sp.<br />

<strong>The</strong>rmoplasma volcanium, AJ299215<br />

<strong>The</strong>rmogymnomonas acidicola, AB269873, Unclassified <strong>The</strong>rmoplasmatales, type sp.<br />

Sulfolobaceae (14:0)<br />

Metallosphaera prunae, X90482<br />

Metallosphaera sedula, D26491, type sp.<br />

Metallosphaera hakonensis, D86414<br />

Acidianus brierleyi, D26489<br />

Acidianus ambivalens, D85506<br />

Acidianus infernus, D85505, type sp.<br />

Acidianus sulfidivorans, AY907891<br />

Sulfolobus tokodaii, AB022438<br />

Sulfolobus yangmingensis, AB010957<br />

Sulfurisphaera ohwakuensis, D85507, type sp.<br />

Sulfolobus acidocaldarius, D14876, type sp.<br />

Stygiolobus azoricus, D85520, type sp.<br />

Sulfolobus metallicus, D85519<br />

Sulfolobus solfataricus, D26490<br />

Pyrodictiaceae (2:0)<br />

Hyperthermus butylicus , CP000493, type sp.<br />

Pyrodictium occultum, M21087, type sp.<br />

Ignisphaera aggregans, DQ060321, Desulfurococcaceae, type sp.<br />

Desulfurococcus fermentans, AY264344, Desulfurococcaceae<br />

Desulfurococcus mobilis, M36474, Desulfurococcaceae<br />

<strong>The</strong>rmosphaera aggregans, X99556, Desulfurococcaceae, type sp.<br />

Sulfophobococcus zilligii, X98064, Desulfurococcaceae, type sp.<br />

Staphylothermus hellenicus, AJ012645, Desulfurococcaceae<br />

Staphylothermus marinus, X99560, Desulfurococcaceae, type sp.<br />

Ignicoccus islandicus, X99562, Desulfurococcaceae, type sp.<br />

Ignicoccus pacificus, AJ271794, Desulfurococcaceae<br />

Ignicoccus hospitalis, AJ318042, Desulfurococcaceae<br />

Aeropyrum camini, AB109559, Desulfurococcaceae<br />

Aeropyrum pernix, D83259, Desulfurococcaceae, type sp.<br />

<strong>The</strong>rmodiscus maritimus, X99554, Desulfurococcaceae, type sp.<br />

Stetteria hydrogenophila, Y07784, Desulfurococcaceae, type sp.<br />

Acidilobus aceticus, AF191225, Desulfurococcaceae, type sp.<br />

Caldisphaera lagunensis, AB087499, Caldisphaeraceae, type sp.<br />

<strong>The</strong>rmoproteaceae (9:0)<br />

Pyrobaculum aerophilum, L07510<br />

Pyrobaculum islandicum, L07511, type sp.<br />

Pyrobaculum arsenaticum, AJ277124<br />

Pyrobaculum oguniense, AB087402<br />

<strong>The</strong>rmoproteus tenax, M35966, type sp.<br />

Vulcanisaeta distributa, AB063630, type sp.<br />

Vulcanisaeta souniana, AB063645<br />

Caldivirga maquilingensis, AB013926, type sp.<br />

<strong>The</strong>rmocladium modestius, AB005296, type sp.<br />

<strong>The</strong>rmofilum pendens, X14835, <strong>The</strong>rmofilaceae, type sp.