2023
Garcia F, Moulia B, Barbacci A. Ce que le son fait aux plantes. 29 novembre 2023 POUR LA SCIENCE N° 554
www.pourlascience.fr/sd/biologie-vegetale/ce-que-le-son-fait-aux-plantes-25852.php Derbyshire MC, Raffaele S. Till death do us pair: Co-evolution of plant-necrotroph interactions. Curr Opin Plant Biol. 2023 Dec;76:102457. doi: 10.1016/j.pbi.2023.102457. https://www.sciencedirect.com/science/article/pii/S136952662300122X Derbyshire MC, Raffaele S. Surface frustration re-patterning underlies the structural landscape and evolvability of fungal orphan candidate effectors. Nat Commun. 2023 Aug 28;14(1):5244. doi: 10.1038/s41467-023-40949-9. www.nature.com/articles/s41467-023-40949-9 Kraepiel Y, Raffaele S. Le langage silencieux des plantes. QUAE Eds 168p. 15 juin 2023 www.quae.com/produit/1816/9782759237012/le-langage-silencieux-des-plantes |
2022
Macquet J, Mounichetty S, Raffaele S. Genetic co-option into plant-filamentous pathogen interactions. Trends Plant Sci. 2022 Nov;27(11):1144-1158. doi: 10.1016/j.tplants.2022.06.011.
www.sciencedirect.com/science/article/pii/S1360138522001820
Léger O, Garcia F, Khafif M, Carrere S, Leblanc-Fournier N, Duclos A, Tournat V, Badel E, Didelon M, Le Ru A, Raffaele S, Barbacci A. Pathogen-derived mechanical cues potentiate the spatio-temporal implementation of plant defense. BMC Biol. 2022 Dec 27;20(1):292. doi: 10.1186/s12915-022-01495-w.
bmcbiol.biomedcentral.com/articles/10.1186/s12915-022-01495-w
www.sciencedirect.com/science/article/pii/S1360138522001820
Léger O, Garcia F, Khafif M, Carrere S, Leblanc-Fournier N, Duclos A, Tournat V, Badel E, Didelon M, Le Ru A, Raffaele S, Barbacci A. Pathogen-derived mechanical cues potentiate the spatio-temporal implementation of plant defense. BMC Biol. 2022 Dec 27;20(1):292. doi: 10.1186/s12915-022-01495-w.
bmcbiol.biomedcentral.com/articles/10.1186/s12915-022-01495-w
2021
Kusch S, Larrouy J, Ibrahim HMM, Mounichetty S, Gasset N, Navaud O, Mbengue M, Zanchetta C, Lopez-Roques C, Donnadieu C, Godiard L, Raffaele S. Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage. ISME J. 2021 Jul 19. doi: 10.1038/s41396-021-01058-x.
https://www.nature.com/articles/s41396-021-01058-x
Behind the paper: How do some pathogens infect hundreds of plants?
Ghosh R, Barbacci A, Leblanc-Fournier N. Mechanostimulation: a promising alternative for sustainable agriculture practices. J Exp Bot. 2021 Apr 2;72(8):2877-2888. doi: 10.1093/jxb/erab036.
academic.oup.com/jxb/article/72/8/2877/6123824
Chen H, Raffaele S, Dong S. Silent control: microbial plant pathogens evade host immunity without coding sequence changes. FEMS Microbiol Rev. 2021 Jan 13:fuab002. doi: 10.1093/femsre/fuab002.
academic.oup.com/femsre/advance-article/doi/10.1093/femsre/fuab002/6095737
Ibrahim HMM, Kusch S, Didelon M, Raffaele S. Genome-wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families. Mol Plant Pathol. 2021 Jan;22(1):31-47. doi: 10.1111/mpp.13006.
https://bsppjournals.onlinelibrary.wiley.com/doi/10.1111/mpp.13006
https://www.nature.com/articles/s41396-021-01058-x
Behind the paper: How do some pathogens infect hundreds of plants?
Ghosh R, Barbacci A, Leblanc-Fournier N. Mechanostimulation: a promising alternative for sustainable agriculture practices. J Exp Bot. 2021 Apr 2;72(8):2877-2888. doi: 10.1093/jxb/erab036.
academic.oup.com/jxb/article/72/8/2877/6123824
Chen H, Raffaele S, Dong S. Silent control: microbial plant pathogens evade host immunity without coding sequence changes. FEMS Microbiol Rev. 2021 Jan 13:fuab002. doi: 10.1093/femsre/fuab002.
academic.oup.com/femsre/advance-article/doi/10.1093/femsre/fuab002/6095737
Ibrahim HMM, Kusch S, Didelon M, Raffaele S. Genome-wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families. Mol Plant Pathol. 2021 Jan;22(1):31-47. doi: 10.1111/mpp.13006.
https://bsppjournals.onlinelibrary.wiley.com/doi/10.1111/mpp.13006
2020
Sucher et al. 2020
A tomato leaflet inoculated by a S. sclerotiorum strain expressing GFP under fluorescence macroscopy |
Didelon M, Khafif M, Godiard L, Barbacci A, Raffaele S. Patterns of sequence and expression diversification associate members of the PADRE gene family with response to fungal pathogens. Front Genet. 2020 May 29;11:491. doi: 10.3389/fgene.2020.00491.
https://www.frontiersin.org/articles/10.3389/fgene.2020.00491/full Kusch S, Ibrahim HMM, Zanchetta C, Lopez-Roques C, Donnadieu C, Raffaele S. A chromosome-scale genome assembly resource for Myriosclerotinia sulcatula infecting sedge grass (Carex sp.). Mol Plant Microbe Interact. 2020 Apr 20. doi:10.1094/MPMI-03-20-0060-A. https://apsjournals.apsnet.org/doi/abs/10.1094/MPMI-03-20-0060-A Sucher J, Mbengue M, Dresen A, Barascud M, Didelon M, Barbacci A, Raffaele S. Phylotranscriptomics of the Pentapetalae Reveals Frequent Regulatory Variation in Plant Local Responses to the Fungal Pathogen Sclerotinia sclerotiorum. Plant Cell. 2020 Apr 7. pii: tpc.00806.2019. doi: 10.1105/tpc.19.00806. www.plantcell.org/content/early/2020/04/07/tpc.19.00806.long Featured in: Carella P. All Together Now: Phylotranscriptomics Reveals Core Responses to Fungal Infection Across the Pentapetalae. Plant Cell. 2020 www.plantcell.org/content/early/2020/04/20/tpc.20.00298 Barbacci A, Navaud O, Mbengue M, Barascud M, Godiard L, Khafif M, Lacaze A, Raffaele S. Rapid identification of an Arabidopsis NLR gene as a candidate conferring susceptibility to Sclerotinia sclerotiorum using time-resolved automated phenotyping. Plant J. 2020 Mar 14. doi: 10.1111/tpj.14747. onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14747 |
2019
Derbyshire M, Mbengue M, Barascud M, Navaud O, Raffaele S. Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight host candidate genes associated with quantitative disease resistance. Mol Plant Pathol. 2019 Sep;20(9):1279-1297.
https://bsppjournals.onlinelibrary.wiley.com/doi/full/10.1111/mpp.12841
Derbyshire MC, Denton-Giles M, Hane JK, Chang S, Mousavi-Derazmahalleh M, Raffaele S, Buchwaldt L, Kamphuis LG. A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum. PLoS One. 2019 Mar 28;14(3):e0214201.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214201
Peyraud R, Mbengue M, Barbacci A, Raffaele S. Intercellular cooperation in a fungal plant pathogen facilitates host colonization. Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3193-3201.
https://www.pnas.org/content/116/8/3193.long
Badet T, Léger O, Barascud M, Voisin D, Sadon P, Vincent R, Ru AL, Balagué C, Roby D, Raffaele S. Expression polymorphism at the ARPC4 locus links the actin cytoskeleton with quantitative disease resistance to Sclerotinia sclerotiorum in Arabidopsis thaliana. New Phytol. 2019 Apr;222(1):480-496.
https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.15580
https://bsppjournals.onlinelibrary.wiley.com/doi/full/10.1111/mpp.12841
Derbyshire MC, Denton-Giles M, Hane JK, Chang S, Mousavi-Derazmahalleh M, Raffaele S, Buchwaldt L, Kamphuis LG. A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum. PLoS One. 2019 Mar 28;14(3):e0214201.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214201
Peyraud R, Mbengue M, Barbacci A, Raffaele S. Intercellular cooperation in a fungal plant pathogen facilitates host colonization. Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3193-3201.
https://www.pnas.org/content/116/8/3193.long
Badet T, Léger O, Barascud M, Voisin D, Sadon P, Vincent R, Ru AL, Balagué C, Roby D, Raffaele S. Expression polymorphism at the ARPC4 locus links the actin cytoskeleton with quantitative disease resistance to Sclerotinia sclerotiorum in Arabidopsis thaliana. New Phytol. 2019 Apr;222(1):480-496.
https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.15580
2018
Kusch S, Frantzeskakis L, Thieron H, Panstruga R. Small RNAs from cereal powdery mildew pathogens may target host plant
genes. Fungal Biol. 2018 Nov;122(11):1050-1063. Lahaye M, Bouin C, Barbacci A, Le Gall S, Foucat L. Water and cell wall contributions to apple mechanical properties. Food Chem. 2018 Dec 1;268:386-394. https://doi.org/10.1016/j.foodchem.2018.06.110 Frantzeskakis L, Kracher B, Kusch S, Yoshikawa-Maekawa M, Bauer S, Pedersen C, Spanu PD, Maekawa T, Schulze-Lefert P, Panstruga R. Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen. BMC Genomics. 2018 May 22;19(1):381. Navaud O, Barbacci A, Taylor A, Clarkson JP, Raffaele S. Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens. Mol Ecol. 2018 Mar;27(5):1309-1323. https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.14523 Perrier A, Barlet X, Peyraud R, Rengel D, Guidot A, Genin S. Comparative transcriptomic studies identify specific expression patterns of virulence factors under the control of the master regulator PhcA in the Ralstonia solanacearum species complex. Microb Pathog. 2018 Mar;116:273-278. Subrahmaniam HJ, Libourel C, Journet EP, Morel JB, Muños S, Niebel A, Raffaele S, Roux F. The genetics underlying natural variation of plant-plant interactions, a beloved but forgotten member of the family of biotic interactions. Plant J. 2018 Feb;93(4):747-770. https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13799 Boni R, Chauhan H, Hensel G, Roulin A, Sucher J, Kumlehn J, Brunner S, Krattinger SG, Keller B. Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnol J. 2018 Jan;16(1):245-253. Peyraud R, Cottret L, Marmiesse L, Genin S. Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen. Nat Commun. 2018 Jan 29;9(1):418. |
Navaud et al. 2018
A close up of a forming sclerotia showing expelled water bubbles magnifying the underlying dense mycelium aggregates. |
2017
Badet T, Voisin D, Mbengue M, Barascud M, Sucher J, Sadon P, Balagué C, Roby D, Raffaele S. Parallel evolution of the POQR prolyl oligo peptidase gene conferring plant quantitative disease resistance. PLoS Genet. 2017 Dec 22;13(12):e1007143.
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007143
Videcoq P, Barbacci A, Assor C, Magnenet V, Arnould O, Le Gall S, Lahaye M. Examining the contribution of cell wall polysaccharides to the mechanical properties of apple parenchyma tissue using exogenous enzymes. J Exp Bot. 2017 Nov 2;68(18):5137-5146.
https://academic.oup.com/jxb/article/68/18/5137/4210381
Ochsner AM, Christen M, Hemmerle L, Peyraud R, Christen B, Vorholt JA. Transposon Sequencing Uncovers an Essential Regulatory Function of Phosphoribulokinase for Methylotrophy. Curr Biol. 2017 Sep 11;27(17):2579-2588.e6.
http://www.cell.com/current-biology/fulltext/S0960-9822(17)30883-7
Acevedo-Garcia J, Gruner K, Reinstädler A, Kemen A, Kemen E, Cao L, Takken FLW, Reitz MU, Schäfer P, O'Connell RJ, Kusch S, Kuhn H, Panstruga R. The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. Sci Rep. 2017 Aug 24;7(1):9319.
https://www.nature.com/articles/s41598-017-07188-7
Gronnier J, Crowet JM, Habenstein B, Nasir MN, Bayle V, Hosy E, Platre MP, Gouguet P, Raffaele S, Martinez D, Grelard A, Loquet A, Simon-Plas F, Gerbeau-Pissot P, Der C, Bayer EM, Jaillais Y, Deleu M, Germain V, Lins L, Mongrand S. Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains. Elife. 2017 Jul 31;6. pii: e26404.
https://elifesciences.org/articles/26404
Boni R, Chauhan H, Hensel G, Roulin A, Sucher J, Kumlehn J, Brunner S, Krattinger SG, Keller B. Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnol J. 2017 May 31.
Derbyshire M, Denton-Giles M, Hegedus D, Seifbarghy S, Rollins JA, Van Kan JA, Seidl MF, Faino L, Mbengue M, Navaud O, Raffaele S, Hammond-Kosack K, Heard S, Oliver RP. 2017. The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens. Genome Biol Evol. 2017 Feb 15.
https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/evx030
Badet T, Peyraud R, Mbengue M, Navaud O, Derbyshire M, Oliver RP, Barbacci A, Raffaele S. Codon optimization underpins generalist parasitism in fungi. Elife. 2017 Feb 3;6
https://elifesciences.org/content/6/e22472
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007143
Videcoq P, Barbacci A, Assor C, Magnenet V, Arnould O, Le Gall S, Lahaye M. Examining the contribution of cell wall polysaccharides to the mechanical properties of apple parenchyma tissue using exogenous enzymes. J Exp Bot. 2017 Nov 2;68(18):5137-5146.
https://academic.oup.com/jxb/article/68/18/5137/4210381
Ochsner AM, Christen M, Hemmerle L, Peyraud R, Christen B, Vorholt JA. Transposon Sequencing Uncovers an Essential Regulatory Function of Phosphoribulokinase for Methylotrophy. Curr Biol. 2017 Sep 11;27(17):2579-2588.e6.
http://www.cell.com/current-biology/fulltext/S0960-9822(17)30883-7
Acevedo-Garcia J, Gruner K, Reinstädler A, Kemen A, Kemen E, Cao L, Takken FLW, Reitz MU, Schäfer P, O'Connell RJ, Kusch S, Kuhn H, Panstruga R. The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. Sci Rep. 2017 Aug 24;7(1):9319.
https://www.nature.com/articles/s41598-017-07188-7
Gronnier J, Crowet JM, Habenstein B, Nasir MN, Bayle V, Hosy E, Platre MP, Gouguet P, Raffaele S, Martinez D, Grelard A, Loquet A, Simon-Plas F, Gerbeau-Pissot P, Der C, Bayer EM, Jaillais Y, Deleu M, Germain V, Lins L, Mongrand S. Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains. Elife. 2017 Jul 31;6. pii: e26404.
https://elifesciences.org/articles/26404
Boni R, Chauhan H, Hensel G, Roulin A, Sucher J, Kumlehn J, Brunner S, Krattinger SG, Keller B. Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnol J. 2017 May 31.
Derbyshire M, Denton-Giles M, Hegedus D, Seifbarghy S, Rollins JA, Van Kan JA, Seidl MF, Faino L, Mbengue M, Navaud O, Raffaele S, Hammond-Kosack K, Heard S, Oliver RP. 2017. The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens. Genome Biol Evol. 2017 Feb 15.
https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/evx030
Badet T, Peyraud R, Mbengue M, Navaud O, Derbyshire M, Oliver RP, Barbacci A, Raffaele S. Codon optimization underpins generalist parasitism in fungi. Elife. 2017 Feb 3;6
https://elifesciences.org/content/6/e22472
2016
Peyraud R, Dubiella U, Barbacci A, Genin S, Raffaele S, Roby D. Advances on plant-pathogen interactions from molecular toward systems biology perspectives. Plant J. 2016 Nov 21.
http://onlinelibrary.wiley.com/doi/10.1111/tpj.13429
Perrier A, Peyraud R, Rengel D, Barlet X, Lucasson E, Gouzy J, Peeters N, Genin S, Guidot A. Enhanced in planta Fitness through Adaptive Mutations in EfpR, a Dual Regulator of Virulence and Metabolic Functions in the Plant Pathogen Ralstonia solanacearum. PLoS Pathog. 2016 Dec 2;12(12):e1006044.
http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1006044
Peyraud R, Cottret L, Marmiesse L, Gouzy J, Genin S. A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum. PLoS Pathog. 2016 Oct 12;12(10):e1005939.
http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005939
Mbengue M, Bourdais G, Gervasi F, Beck M, Zhou J, Spallek T, Bartels S, Boller T, Ueda T, Kuhn H, Robatzek S. Clathrin-dependent endocytosis is required for immunity mediated by pattern recognition receptor kinases. Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):11034-9.
http://www.pnas.org/content/113/39/11034.long
Lebrigand K, He le D, Thakur N, Arguel MJ, Polanowska J, Henrissat B, Record E, Magdelenat G, Barbe V, Raffaele S, Barbry P, Ewbank JJ. Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes. PLoS Genet. 2016 May 6;12(5):e1006017.
http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006017
Postma J, Liebrand TW, Bi G, Evrard A, Bye RR, Mbengue M, Kuhn H, Joosten MH, Robatzek S. Avr4 promotes Cf-4 receptor-like protein association with the BAK1/SERK3 receptor-like kinase to initiate receptor endocytosis and plant immunity. New Phytol. 2016 Apr;210(2):627-42.
http://onlinelibrary.wiley.com/doi/10.1111/nph.13802/
Vernié T, Camut S, Camps C, Rembliere C, de Carvalho-Niebel F, Mbengue M, Timmers T, Gasciolli V, Thompson R, le Signor C, Lefebvre B, Cullimore J, Hervé C. PUB1 Interacts with the Receptor Kinase DMI2 and Negatively Regulates Rhizobial and Arbuscular Mycorrhizal Symbioses through Its Ubiquitination Activity in Medicago truncatula. Plant Physiol. 2016 Apr;170(4):2312-24.
http://www.plantphysiol.org/content/170/4/2312.long
Mithoe SC, Ludwig C, Pel MJ, Cucinotta M, Casartelli A, Mbengue M, Sklenar J, Derbyshire P, Robatzek S, Pieterse CM, Aebersold R, Menke FL. Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase. EMBO Rep. 2016 Mar;17(3):441-54.
http://embor.embopress.org/content/17/3/441.long
Mbengue M, Navaud O, Peyraud R, Barascud M, Badet T, Vincent R, Barbacci A, Raffaele S. Emerging Trends in Molecular Interactions between Plants and the Broad Host Range Fungal Pathogens Botrytis cinerea and Sclerotinia sclerotiorum. Front Plant Sci. 2016 Mar 31;7:422.
http://journal.frontiersin.org/article/10.3389/fpls.2016.00422/full
http://onlinelibrary.wiley.com/doi/10.1111/tpj.13429
Perrier A, Peyraud R, Rengel D, Barlet X, Lucasson E, Gouzy J, Peeters N, Genin S, Guidot A. Enhanced in planta Fitness through Adaptive Mutations in EfpR, a Dual Regulator of Virulence and Metabolic Functions in the Plant Pathogen Ralstonia solanacearum. PLoS Pathog. 2016 Dec 2;12(12):e1006044.
http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1006044
Peyraud R, Cottret L, Marmiesse L, Gouzy J, Genin S. A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum. PLoS Pathog. 2016 Oct 12;12(10):e1005939.
http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005939
Mbengue M, Bourdais G, Gervasi F, Beck M, Zhou J, Spallek T, Bartels S, Boller T, Ueda T, Kuhn H, Robatzek S. Clathrin-dependent endocytosis is required for immunity mediated by pattern recognition receptor kinases. Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):11034-9.
http://www.pnas.org/content/113/39/11034.long
Lebrigand K, He le D, Thakur N, Arguel MJ, Polanowska J, Henrissat B, Record E, Magdelenat G, Barbe V, Raffaele S, Barbry P, Ewbank JJ. Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes. PLoS Genet. 2016 May 6;12(5):e1006017.
http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006017
Postma J, Liebrand TW, Bi G, Evrard A, Bye RR, Mbengue M, Kuhn H, Joosten MH, Robatzek S. Avr4 promotes Cf-4 receptor-like protein association with the BAK1/SERK3 receptor-like kinase to initiate receptor endocytosis and plant immunity. New Phytol. 2016 Apr;210(2):627-42.
http://onlinelibrary.wiley.com/doi/10.1111/nph.13802/
Vernié T, Camut S, Camps C, Rembliere C, de Carvalho-Niebel F, Mbengue M, Timmers T, Gasciolli V, Thompson R, le Signor C, Lefebvre B, Cullimore J, Hervé C. PUB1 Interacts with the Receptor Kinase DMI2 and Negatively Regulates Rhizobial and Arbuscular Mycorrhizal Symbioses through Its Ubiquitination Activity in Medicago truncatula. Plant Physiol. 2016 Apr;170(4):2312-24.
http://www.plantphysiol.org/content/170/4/2312.long
Mithoe SC, Ludwig C, Pel MJ, Cucinotta M, Casartelli A, Mbengue M, Sklenar J, Derbyshire P, Robatzek S, Pieterse CM, Aebersold R, Menke FL. Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase. EMBO Rep. 2016 Mar;17(3):441-54.
http://embor.embopress.org/content/17/3/441.long
Mbengue M, Navaud O, Peyraud R, Barascud M, Badet T, Vincent R, Barbacci A, Raffaele S. Emerging Trends in Molecular Interactions between Plants and the Broad Host Range Fungal Pathogens Botrytis cinerea and Sclerotinia sclerotiorum. Front Plant Sci. 2016 Mar 31;7:422.
http://journal.frontiersin.org/article/10.3389/fpls.2016.00422/full
2015
Dong et al. 2015
Heatmap view of genome architecture in Leptosphaeria maculans and Phytophthora infestans highlighting known avirulence genes. |
Dong S, Raffaele S, Kamoun S. The two-speed genomes of filamentous pathogens: waltz with plants. Curr Opin Genet Dev. 2015 Dec;35:57-65.
http://www.sciencedirect.com/science/article/pii/S0959437X15000945 Marmiesse L, Peyraud R, Cottret L. FlexFlux: combining metabolic flux and regulatory network analyses. BMC Syst Biol. 2015 Dec 15;9:93. https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-015-0238-z Badet T, Peyraud R, Raffaele S. Common protein sequence signatures associate with Sclerotinia borealis lifestyle and secretion in fungal pathogens of the Sclerotiniaceae. Front Plant Sci. 2015 Sep 24;6:776. http://journal.frontiersin.org/article/10.3389/fpls.2015.00776/full Barbacci A, Magnenet V, Lahaye M. Thermodynamical journey in plant biology. Front Plant Sci. 2015 Jun 30;6:481. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074400 Le Roux C, Huet G, Jauneau A, Camborde L, Trémousaygue D, Kraut A, Zhou B, Levaillant M, Adachi H, Yoshioka H, Raffaele S, Berthomé R, Couté Y, Parker JE, Deslandes L. A receptor pair with an integrated decoy converts pathogen disabling of transcription factors to immunity. Cell. 2015 May 21;161(5):1074-88. http://www.cell.com/cell/abstract/S0092-8674%2815%2900442-0 Oliva RF, Cano LM, Raffaele S, Win J, Bozkurt TO, Belhaj K, Oh SK, Thines M, Kamoun S. A Recent Expansion of the RXLR Effector Gene Avrblb2 Is Maintained in Global Populations of Phytophthora infestans Indicating Different Contributions to Virulence. Mol Plant Microbe Interact. 2015 Aug;28(8):901-12. http://apsjournals.apsnet.org/doi/abs/10.1094/MPMI-12-14-0393-R |
2014
Khafif M, Cottret L, Balagué C, Raffaele S. Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes. BMC Bioinformatics. 2014 Jun 26;15:222.
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-15-222 Resistance to phytopathogens e tutti quanti: placing plant quantitative disease resistance on the map. Roux F, Voisin D, Badet T, Balagué C, Barlet X, Huard-Chauveau C, Roby D, Raffaele S. Mol Plant Pathol. 2014 Jun;15(5):427-32. http://onlinelibrary.wiley.com/doi/10.1111/mpp.12138/abstract Guyon K, Balagué C, Roby D, Raffaele S. Secretome analysis reveals effector candidates associated with broad host range necrotrophy in the fungal plant pathogen Sclerotinia sclerotiorum. BMC Genomics. 2014 May 4;15:336. http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-336 Bozkurt TO, Richardson A, Dagdas YF, Mongrand S, Kamoun S, Raffaele S. The Plant Membrane-Associated REMORIN1.3 Accumulates in Discrete Perihaustorial Domains and Enhances Susceptibility to Phytophthora infestans. Plant Physiol. 2014 May 7;165(3):1005-1018. http://www.plantphysiol.org/content/165/3/1005.long Saunders DG, Win J, Kamoun S, Raffaele S. Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes. Methods Mol Biol. 2014;1127:29-51. doi: 10.1007/978-1-62703-986-4_3. http://link.springer.com/protocol/10.1007%2F978-1-62703-986-4_3 |
Bozkurt et al. 2014
Phytophthora infestans tdtomato (red) colonizing Nicotiana cells expressing tagged remorin 1.3 (blue) |
2013
Guyon et al. 2014
Close-up view of a tomato leaf infected by Sclerotinia sclerotiorum, with a sclerotia forming at the back. |
Cano LM, Raffaele S, Haugen RH, Saunders DG, Leonelli L, MacLean D, Hogenhout SA, Kamoun S. Major transcriptome reprogramming underlies floral mimicry induced by the rust fungus Puccinia monoica in Boechera stricta. PLoS One. 2013 Sep 17;8(9):e75293.
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075293 Meyer DF, Noroy C, Moumène A, Raffaele S, Albina E, Vachiéry N. Searching algorithm for type IV secretion system effectors 1.0: a tool for predicting type IV effectors and exploring their genomic context. Nucleic Acids Res. 2013 Nov;41(20):9218-29. http://nar.oxfordjournals.org/content/41/20/9218.long Pais M, Win J, Yoshida K, Etherington GJ, Cano LM, Raffaele S, Banfield MJ, Jones A, Kamoun S, Saunders DG. From pathogen genomes to host plant processes: the power of plant parasitic oomycetes. Genome Biol. 2013 Jun 28;14(6):211. http://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-6-211 Raffaele S, Rivas S. Regulate and be regulated: integration of defense and other signals by the AtMYB30 transcription factor. Front Plant Sci. 2013 Apr 11;4:98. http://journal.frontiersin.org/article/10.3389/fpls.2013.00098/full Raffaele S, Perraki A, Mongrand S. The Remorin C-terminal Anchor was shaped by convergent evolution among membrane binding domains. Plant Signal Behav. 2013 Mar;8(3):e23207. http://www.tandfonline.com/doi/full/10.4161/psb.23207 |
2012
Jasinski S, Lécureuil A, Miquel M, Loudet O, Raffaele S, Froissard M, Guerche P. Natural variation in seed very long chain fatty acid content is controlled by a new isoform of KCS18 in Arabidopsis thaliana. PLoS One. 2012;7(11):e49261
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0049261
Cooke DE, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM, Grünwald NJ, Hein I, MacLean D, McNicol JW, Randall E, Oliva RF, Pel MA, Shaw DS, Squires JN, Taylor MC, Vleeshouwers VG, Birch PR, Lees AK, Kamoun S. Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog. 2012;8(10):e1002940
https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1002940
Perraki A, Cacas JL, Crowet JM, Lins L, Castroviejo M, German-Retana S, Mongrand S, Raffaele S. Plasma membrane localization of Solanum tuberosum remorin1.3 is mediated by conformational changes in a novel C-terminal anchor and required for the restriction of potato virus X movement. Plant Physiol. 2012 Oct;160(2):624-37.
http://www.plantphysiol.org/content/160/2/624.long
Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM, Bharti AK, Donahoo RS, Finley S, Huitema E, Hulvey J, Platt D, Salamov A, Savidor A, Sharma R, Stam R, Storey D, Thines M, Win J, Haas BJ, Dinwiddie DL, Jenkins J, Knight JR, Affourtit JP, Han CS, Chertkov O, Lindquist EA, Detter C, Grigoriev IV, Kamoun S, Kingsmore SF. Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Mol Plant Microbe Interact. 2012 Oct;25(10):1350-60
https://apsjournals.apsnet.org/doi/10.1094/MPMI-02-12-0028-R
Raffaele S, Kamoun S. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat Rev Microbiol. 2012 May 8;10(6):417-30.
https://www.nature.com/articles/nrmicro2790
Saunders DG, Win J, Cano LM, Szabo LJ, Kamoun S, Raffaele S. Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi. PLoS One. 2012;7(1):e29847.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029847
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0049261
Cooke DE, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM, Grünwald NJ, Hein I, MacLean D, McNicol JW, Randall E, Oliva RF, Pel MA, Shaw DS, Squires JN, Taylor MC, Vleeshouwers VG, Birch PR, Lees AK, Kamoun S. Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog. 2012;8(10):e1002940
https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1002940
Perraki A, Cacas JL, Crowet JM, Lins L, Castroviejo M, German-Retana S, Mongrand S, Raffaele S. Plasma membrane localization of Solanum tuberosum remorin1.3 is mediated by conformational changes in a novel C-terminal anchor and required for the restriction of potato virus X movement. Plant Physiol. 2012 Oct;160(2):624-37.
http://www.plantphysiol.org/content/160/2/624.long
Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM, Bharti AK, Donahoo RS, Finley S, Huitema E, Hulvey J, Platt D, Salamov A, Savidor A, Sharma R, Stam R, Storey D, Thines M, Win J, Haas BJ, Dinwiddie DL, Jenkins J, Knight JR, Affourtit JP, Han CS, Chertkov O, Lindquist EA, Detter C, Grigoriev IV, Kamoun S, Kingsmore SF. Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Mol Plant Microbe Interact. 2012 Oct;25(10):1350-60
https://apsjournals.apsnet.org/doi/10.1094/MPMI-02-12-0028-R
Raffaele S, Kamoun S. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat Rev Microbiol. 2012 May 8;10(6):417-30.
https://www.nature.com/articles/nrmicro2790
Saunders DG, Win J, Cano LM, Szabo LJ, Kamoun S, Raffaele S. Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi. PLoS One. 2012;7(1):e29847.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029847
2011
Vleeshouwers VG, Raffaele S, Vossen JH, Champouret N, Oliva R, Segretin ME, Rietman H, Cano LM, Lokossou A, Kessel G, Pel MA, Kamoun S. Understanding and exploiting late blight resistance in the age of effectors. Annu Rev Phytopathol. 2011;49:507-31.
https://www.annualreviews.org/doi/full/10.1146/annurev-phyto-072910-095326
https://www.annualreviews.org/doi/full/10.1146/annurev-phyto-072910-095326
2010
Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, Thines M, Jiang RH, Zody MC, Kunjeti SG, Donofrio NM, Meyers BC, Nusbaum C, Kamoun S. Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science. 2010 Dec 10;330(6010):1540-3.
http://science.sciencemag.org/content/330/6010/1540.long Raffaele S, Win J, Cano LM, Kamoun S. Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans. BMC Genomics. 2010 Nov 16;11:637. https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-11-637 Oliva R, Win J, Raffaele S, Boutemy L, Bozkurt TO, Chaparro-Garcia A, Segretin ME, Stam R, Schornack S, Cano LM, van Damme M, Huitema E, Thines M, Banfield MJ, Kamoun S. Recent developments in effector biology of filamentous plant pathogens. Cell Microbiol. 2010 Jun;12(6):705-15. https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1462-5822.2010.01471.x Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, Ferriera S, Fuerstenberg SI, Gachon CM, Gaulin E, Govers F, Grenville-Briggs L, Horner N, Hostetler J, Jiang RH, Johnson J, Krajaejun T, Lin H, Meijer HJ, Moore B, Morris P, Phuntmart V, Puiu D, Shetty J, Stajich JE, Tripathy S, Wawra S, van West P, Whitty BR, Coutinho PM, Henrissat B, Martin F, Thomas PD, Tyler BM, De Vries RP, Kamoun S, Yandell M, Tisserat N, Buell CR. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol. 2010;11(7):R73. https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-7-r73 Lefebvre B, Timmers T, Mbengue M, Moreau S, Hervé C, Tóth K, Bittencourt-Silvestre J, Klaus D, Deslandes L, Godiard L, Murray JD, Udvardi MK, Raffaele S, Mongrand S, Cullimore J, Gamas P, Niebel A, Ott T. A remorin protein interacts with symbiotic receptors and regulates bacterial infection. Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2343-8. http://www.pnas.org/content/107/5/2343.long |
Raffaele et al. 2010
Genome evolution in fungal and oomycete pathogens illustrated by downy mildew disease on Arabidopsis. |