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Abstract 


The genus Cercospora includes many important plant pathogenic fungi associated with leaf spot diseases on a wide range of hosts. The mainland of Iran covers various climatic regions with a great biodiversity of vascular plants, and a correspondingly high diversity of cercosporoid fungi. However, most of the cercosporoid species found to date have been identified on the basis of morphological characteristics and there are no cultures that support these identifications. In this study the Consolidated Species Concept was applied to differentiate Cercospora species collected from Iran. A total of 161 Cercospora isolates recovered from 74 host species in northern Iran were studied by molecular phylogenetic analysis. Our results revealed a rich diversity of Cercospora species in northern Iran. Twenty species were identified based on sequence data of five genomic loci (ITS, TEF1-α, actin, calmodulin and histone H3), host, cultural and morphological data. Six novel species, viz. C. convolvulicola, C. conyzae-canadensis, C. cylindracea, C. iranica, C. pseudochenopodii and C. sorghicola, are introduced. The most common taxon was Cercospora cf. flagellaris, which remains an unresolved species complex with a wide host range. New hosts were recorded for previously known Cercospora species, including C. apii, C. armoraciae, C. beticola, C. cf. richardiicola, C. rumicis, Cercospora sp. G and C. zebrina.

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Persoonia. 2015 Jun; 34: 65–86.
Published online 2014 Dec 1. https://doi.org/10.3767/003158515X685698
PMCID: PMC4510272
PMID: 26240446

Application of the consolidated species concept to Cercospora spp. from Iran

Abstract

The genus Cercospora includes many important plant pathogenic fungi associated with leaf spot diseases on a wide range of hosts. The mainland of Iran covers various climatic regions with a great biodiversity of vascular plants, and a correspondingly high diversity of cercosporoid fungi. However, most of the cercosporoid species found to date have been identified on the basis of morphological characteristics and there are no cultures that support these identifications. In this study the Consolidated Species Concept was applied to differentiate Cercospora species collected from Iran. A total of 161 Cercospora isolates recovered from 74 host species in northern Iran were studied by molecular phylogenetic analysis. Our results revealed a rich diversity of Cercospora species in northern Iran. Twenty species were identified based on sequence data of five genomic loci (ITS, TEF1-α, actin, calmodulin and histone H3), host, cultural and morphological data. Six novel species, viz. C. convolvulicola, C. conyzae-canadensis, C. cylindracea, C. iranica, C. pseudochenopodii and C. sorghicola, are introduced. The most common taxon was Cercospora cf. flagellaris, which remains an unresolved species complex with a wide host range. New hosts were recorded for previously known Cercospora species, including C. apii, C. armoraciae, C. beticola, C. cf. richardiicola, C. rumicis, Cercospora sp. G and C. zebrina.

Keywords: biodiversity, Cercospora apii complex, cercosporoid, host specificity, leaf spot, multilocus sequence typing (MLST), Mycosphaerella, taxonomy

INTRODUCTION

Species of Cercospora (Mycosphaerellaceae) are often associated with leaf spots, but also cause necrotic lesions on flowers, fruits, bracts, seeds and pedicels of many cultivated and native plants in a range of climates worldwide (Goodwin et al. 2001, Crous & Braun 2003, Agrios 2005). The genus includes many important pathogens of agricultural crops, including cereals, vegetables, ornamentals, forest trees and grasses. Examples are C. beticola on sugar beet (Weiland & Koch 2004), C. zonata on faba beans (Kimber 2011), C. zeae-maydis and C. zeina on maize (Crous et al. 2006) and C. carotae on carrots (Kushalappa et al. 1989). Some species are considered potential biocontrol agents of weeds, including C. caricis on Cyperus rotundus and C. rodmanii on water hyacinth (Morris & Crous 1994, Charudattan 2001, Inglis et al. 2001, Tessmann et al. 2001, Praveena & Naseema 2004).

The genus Cercospora was established by Fresenius (in Fuckel 1863), and C. penicillata was later designated as the type species of the genus (Crous & Braun 2003). Since the description of Cercospora, the taxonomy of this genus together with the description of individual species has proven highly problematic. Morphological traits in Cercospora are generally conserved and specific morphological characters (including conidial shape and size, the presence or absence of external mycelium and conidiophore morphology), have often been used to describe and identify Cercospora species, despite their limitations. The paucity of useful morphological characters and high level of intraspecific variation has meant species definition in this genus being largely dependent on host plant association, i.e., a species of Cercospora was described as new when found on a different host species (Chupp 1954, Ellis 1971). The classification of Cercospora species is clouded by a history of taxonomic recombinations and name changes. While the description of new species from different hosts has increased the number of species on the one hand (Pollack 1987), the synonymy of names has decreased the species number on the other (Crous & Braun 2003). A significant problem for the taxonomy of Cercospora is the degree of host-specificity of the various species. Host data for Cercospora spp. is not well known, and should be avoided as the primary criterion for identification purposes. Extensive host inoculation experiments have shown that identification of Cercospora spp. by host specificity alone is error prone, because many species are not restricted to a single host. For example, several taxa including C. apii, C. beticola, C. canescens and C. zebrina, occur on different unrelated plant families and have broad host ranges (Crous & Braun 2003, Lartey et al. 2005, Bakhshi et al. 2012b, Groenewald et al. 2013).

During the course of monographic studies on Cercospora, Crous & Braun (2003) proposed that only genetically and morphologically distinguishable taxa should be treated as separate species. They recognised 659 names in the genus Cercospora, with a further 281 names referred to C. apii s.lat. Based on molecular data and morphological examinations, Crous & Braun (2003) concluded that C. apii-like fungi form a morphologically uniform, complicated assemblage of taxa in which the process of speciation has not concluded. They introduced the concept of ‘compound species‘ consisting of morphologically indistinguishable species with different races (host range) for a complex of plurivorous taxa, which were morphologically indistinguishable.

Cercospora was often linked to the sexual genus Mycosphaerella according to phylogenetic analyses based on nrDNA sequence loci, especially ITS and later 28S nrDNA (Stewart et al. 1999, Crous et al. 2000). Contrary to an earlier indication that many diverse asexual genera were linked to Mycosphaerella (Arzanlou et al. 2007, 2008), it was later shown that Mycosphaerella was polyphyletic (Crous et al. 2007). Subsequently, Mycosphaerella was split into numerous genera, correlating with different asexual morphs (Crous et al. 2009a, b, Quaedvlieg et al. 2013, Verkley et al. 2013). In this regard, Mycosphaerella s.str. is now restricted to taxa that form Ramularia asexual morphs (Verkley et al. 2004, Groenewald et al. 2013). Following a proposal accepted by the International Code of Nomenclature for Algae, Fungi and Plants (ICN) (Hawksworth 2011, Norvell 2011), the asexual name Ramularia (1833) was chosen over the younger, confused sexual name Mycosphaerella (1884) (Crous et al. 2009a, b, Hyde et al. 2013, Kirk et al. 2013). The genus Cercospora is now considered a holomorphic genus in its own right (Groenewald et al. 2013), with some species exhibiting the ability to form mycosphaerella-like sexual morphs (Corlett 1991, Crous et al. 2004b).

In recent years, multi-gene DNA sequence datasets have proven useful for Cercospora species identification (Crous et al. 2004c, Groenewald et al. 2005, 2006, 2010, Montenegro-Calderón et al. 2011). The most inclusive study to date was that of Groenewald et al. (2013), who compared 360 Cercospora isolates, isolated from 161 host species from 39 countries. One important outcome of this study was that several species originally referred to C. apii s.lat. based on morphology (Crous & Braun 2003), were separated as distinct phylogenetic species. This also led to the conclusion that morphology alone frequently provides an insufficient basis for species discrimination in the genus Cercospora. Furthermore, multilocus DNA sequence typing integrated with ecology, morphology and cultural characteristics, referred to as the Consolidated Species Concept (Quaedvlieg et al. 2014), proved the most effective method for the recognition of Cercospora spp. (Groenewald et al. 2010, 2013).

The mainland of Iran covers various climatic regions with a great biodiversity of vascular plants, and corresponding diversity of cercosporoid fungi. However, most of the species to date have been identified and described on the basis of morphological characteristics sensu Chupp (1954), with no attempt to derive cultures or molecular data. In order to further an understanding of this group of fungi in Iran, we initially assembled a checklist (Bakhshi et al. 2012a). Our primary aim was to describe Cercospora spp. from the north and northwest of Iran based on freshly collected specimens, derived cultures, and DNA sequence data. To achieve this aim, we sequenced the ITS locus (including ITS1, 5.8S nrRNA gene and ITS2), together with parts of four protein coding genes, viz. translation elongation factor 1-alpha (TEF1-α), actin (ACT), calmodulin (CAL) and histone H3 (HIS), and compared these data to publically available sequence data.

MATERIALS AND METHODS

Specimens and isolates

Leaf samples colonised with Cercospora spp. were collected in the field from different provinces, including Guilan, Mazandaran, Ardabil, Zanjan, West and East Azerbaijan and taken to the laboratory. Leaves were examined directly under a Nikon SMZ 1500 stereo-microscope to observe sporulation. Conidia were scraped from a single leaf spot, and single conidial colonies were established on 2 % malt extract agar (MEA; Fluka, Hamburg, Germany) (Bakhshi et al. 2011). Dried specimens were maintained in the Fungal Herbarium of the Iranian Research Institute of Plant Protection (IRAN). Axenic cultures were deposited in the Culture Collection of Tabriz University (CCTU) and the Centraalbureau voor Schimmelcultures (CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands). A complete list of the isolates used in this study is presented in Table 1.

Table 1

Collection details and GenBank accession numbers of isolates included in this study.

SpeciesCulture accession number(s)1HostHost FamilyOrigionCollectorGenBank accession numbers2
ITSTEF1-αACTCALHIS
Cercospora althaeinaCCTU 1001Althaea roseaMalvaceaeIran, Guilan, TaleshM. BakhshiKJ886392KJ886231KJ885909KJ885748KJ886070
CCTU 1026Althaea roseaMalvaceaeIran, Guilan, TaleshM. BakhshiKJ886393KJ886232KJ885910KJ885749KJ886071
CCTU 1028Althaea roseaMalvaceaeIran, Guilan, Sowme’eh SaraM. BakhshiKJ886394KJ886233KJ885911KJ885750KJ886072
CCTU 1071Malva sylvestrisMalvaceaeIran, Guilan, TaleshM. BakhshiKJ886395KJ886234KJ885912KJ885751KJ886073
CCTU 1152Althaea roseaMalvaceaeIran, Guilan, TaleshM. BakhshiKJ886396KJ886235KJ885913KJ885752KJ886074
CCTU 1194Malva sylvestrisMalvaceaeIran, East Azerbaijan, KaleibarM. ArzanlouKJ886397KJ886236KJ885914KJ885753KJ886075
CCTU 1222Malva sylvestrisMalvaceaeIran, Guilan, TaleshM. BakhshiKJ886398KJ886237KJ885915KJ885754KJ886076
CCTU 1249Malva sylvestrisMalvaceaeIran, East Azerbaijan, KaleibarM. ArzanlouKJ886399KJ886238KJ885916KJ885755KJ886077
Cercospora apiiCCTU 1041; CPC 24910Plantago lanceolataPlantaginaceaeIran, Guilan, ChaboksarM. BakhshiKJ886400KJ886239KJ885917KJ885756KJ886078
CCTU 1047Plantago lanceolataPlantaginaceaeIran, Zanjan, TaromM. BakhshiKJ886401KJ886240KJ885918KJ885757KJ886079
CCTU 1082; CBS 138728Plantago lanceolataPlantaginaceaeIran, Ardabil, MoghanM. BakhshiKJ886402KJ886241KJ885919KJ885758KJ886080
CCTU 1095Plantago lanceolataPlantaginaceaeIran, East Azerbaijan, HorandM. BakhshiKJ886403KJ886242KJ885920KJ885759KJ886081
CCTU 1179Plantago lanceolataPlantaginaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886404KJ886243KJ885921KJ885760KJ886082
CCTU 1063Ecballium elaterium*CucurbitaceaeIran, Ardabil, MoghanM. BakhshiKJ886405KJ886244KJ885922KJ885761KJ886083
CCTU 1217Ecballium elateriumCucurbitaceaeIran, Ardabil, MoghanM. BakhshiKJ886406KJ886245KJ885923KJ885762KJ886084
CCTU 1134Heliotropium europaeumBoraginaceaeIran, Guilan, AstaraM. BakhshiKJ886407KJ886246KJ885924KJ885763KJ886085
CCTU 1200; CBS 138581Heliotropium europaeumBoraginaceaeIran, Ardabil, MoghanM. BakhshiKJ886408KJ886247KJ885925KJ885764KJ886086
CCTU 1061Cynanchum acutum*ApocynaceaeIran, Ardabil, MoghanM. BakhshiKJ886409KJ886248KJ885926KJ885765KJ886087
CCTU 1069Cynanchum acutumApocynaceaeIran, Ardabil, MoghanM. BakhshiKJ886410KJ886249KJ885927KJ885766KJ886088
CCTU 1086; CBS 136037Cynanchum acutumApocynaceaeIran, Ardabil, MoghanM. BakhshiKJ886411KJ886250KJ885928KJ885767KJ886089
CCTU 1215Cynanchum acutumApocynaceaeIran, Ardabil, MoghanM. BakhshiKJ886412KJ886251KJ885929KJ885768KJ886090
CCTU 1219; CBS 136155Cynanchum acutumApocynaceaeIran, Ardabil, MoghanM. BakhshiKJ886413KJ886252KJ885930KJ885769KJ886091
Cercospora armoraciaeCCTU 1013??Iran, East Azerbaijan, MianehM. TorbatiKJ886414KJ886253KJ885931KJ885770KJ886092
CCTU 1022; CBS 136028??Iran, East Azerbaijan, MianehM. TorbatiKJ886415KJ886254KJ885932KJ885771KJ886093
CCTU 1040; CBS 136131Tanacetum balsamita*AsteraceaeIran, Zanjan, TaromM. BakhshiKJ886416KJ886255KJ885933KJ885772KJ886094
CCTU 1107?AsteraceaeIran, Zanjan, TaromM. BakhshiKJ886417KJ886256KJ885934KJ885773KJ886095
CCTU 1117; CBS 136132Cardaria drabaBrassicaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886418KJ886257KJ885935KJ885774KJ886096
CCTU 1234Cardaria drabaBrassicaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886419KJ886258KJ885936KJ885775KJ886097
CCTU 1127; CBS 136133Capparis spinosa*CapparidaceaeIran, Khuzestan, AhvazE. MohammadianKJ886420KJ886259KJ885937KJ885776KJ886098
CCTU 1127.2Capparis spinosaCapparidaceaeIran, Khuzestan, AhvazE. MohammadianKJ886421KJ886260KJ885938KJ885777KJ886099
CCTU 1190; CBS 136134Coronilla variaFabaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886422KJ886261KJ885939KJ885778KJ886100
Cercospora beticolaCCTU 1035Malva sylvestrisMalvaceaeIran, Zanjan, TaromM. BakhshiKJ886423KJ886262KJ885940KJ885779KJ886101
CCTU 1057Chenopodium sp.ChenopodiaceaeIran, Ardabil, MoghanM. BakhshiKJ886424KJ886263KJ885941KJ885780KJ886102
CCTU 1065Chenopodium sp.ChenopodiaceaeIran, Ardabil, MoghanM. BakhshiKJ886425KJ886264KJ885942KJ885781KJ886103
CCTU 1074; CPC 24909Malva neglectaMalvaceaeIran, Ardabil, MoghanM. BakhshiKJ886426KJ886265KJ885943KJ885782KJ886104
CCTU 1087Chenopodium sp.ChenopodiaceaeIran, Ardabil, MoghanM. BakhshiKJ886427KJ886266KJ885944KJ885783KJ886105
CCTU 1088; CBS 138582Sonchus asper*AsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886428KJ886267KJ885945KJ885784KJ886106
CCTU 1089; CPC 24911Plantago lanceolata*PlantaginaceaeIran, Ardabil, MoghanM. BakhshiKJ886429KJ886268KJ885946KJ885785KJ886107
CCTU 1108Plantago lanceolataPlantaginaceaeIran, Zanjan, TaromM. BakhshiKJ886430KJ886269KJ885947KJ885786KJ886108
CCTU 1109Malva sylvestrisMalvaceaeIran, Zanjan, TaromM. BakhshiKJ886431KJ886270KJ885948KJ885787KJ886109
CCTU 1135Beta vulgarisChenopodiaceaeIran, Guilan, AstaraM. BakhshiKJ886432KJ886271KJ885949KJ885788KJ886110
CCTU 1199; CBS 136128Rumex crispus*PolygonaceaeIran, Mazandaran, RamsarM. BakhshiKJ886433KJ886272KJ885950KJ885789KJ886111
CCTU 1201Malva neglectaMalvaceaeIran, Ardabil, MoghanM. BakhshiKJ886434KJ886273KJ885951KJ885790KJ886112
CCTU 1205; CBS 136127Sesamum indicum*PedaliaceaeIran, Ardabil, MoghanM. BakhshiKJ886435KJ886274KJ885952KJ885791KJ886113
CCTU 1208Sonchus sp.*AsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886436KJ886275KJ885953KJ885792KJ886114
Cercospora chenopodiiCCTU 1033Chenopodium albumChenopodiaceaeIran, Guilan, TaleshM. BakhshiKJ886437KJ886276KJ885954KJ885793KJ886115
CCTU 1060Chenopodium albumChenopodiaceaeIran, Guilan, Bandar-e AnzaliM. BakhshiKJ886438KJ886277KJ885955KJ885794KJ886116
CCTU 1157Chenopodium albumChenopodiaceaeIran, Guilan, LangroudM. BakhshiKJ886439KJ886278KJ885956KJ885795KJ886117
CCTU 1163Chenopodium albumChenopodiaceaeIran, Guilan, LahijanM. BakhshiKJ886440KJ886279KJ885957KJ885796KJ886118
Cercospora convolvulicolaCCTU 1083; CBS 136126 (ex-type)Convolvulus arvensisConvolvulaceaeIran, Ardabil, MoghanM. BakhshiKJ886441KJ886280KJ885958KJ885797KJ886119
CCTU 1083.2Convolvulus arvensisConvolvulaceaeIran, Ardabil, MoghanM. BakhshiKJ886442KJ886281KJ885959KJ885798KJ886120
Cercospora conyzae-canadensisCCTU 1008Conyza canadensisAsteraceaeIran, Guilan, TaleshM. BakhshiKJ886443KJ886282KJ885960KJ885799KJ886121
CCTU 1105Conyza canadensisAsteraceaeIran, Zanjan, TaromM. BakhshiKJ886444KJ886283KJ885961KJ885800KJ886122
CCTU 1119; CBS 135978 (ex-type)Conyza canadensisAsteraceaeIran, Guilan, TaleshM. BakhshiKJ886445KJ886284KJ885962KJ885801KJ886123
Cercospora cylindraceaCCTU 1016Cichorium intybusAsteraceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886446KJ886285KJ885963KJ885802KJ886124
CCTU 1044; CBS 136021Lactuca serriolaAsteraceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886447KJ886286KJ885964KJ885803KJ886125
CCTU 1049Lactuca serriolaAsteraceaeIran, Zanjan, TaromM. BakhshiKJ886448KJ886287KJ885965KJ885804KJ886126
CCTU 1081; CBS 138580 (ex-type)Lactuca serriolaAsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886449KJ886288KJ885966KJ885805KJ886127
CCTU 1114Cichorium intybusAsteraceaeIran, Zanjan, TaromM. BakhshiKJ886450KJ886289KJ885967KJ885806KJ886128
CCTU 1183Lactuca serriolaAsteraceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886451KJ886290KJ885968KJ885807KJ886129
CCTU 1189Lactuca serriolaAsteraceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886452KJ886291KJ885969KJ885808KJ886130
CCTU 1207Lactuca serriolaAsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886453KJ886292KJ885970KJ885809KJ886131
Cercosporacf. flagellarisCCTU 1005Xanthium strumarium*AsteraceaeIran, Guilan, TaleshM. BakhshiKJ886454KJ886293KJ885971KJ885810KJ886132
CCTU 1006; CBS 136030Impatiens balsamina*BalsaminaceaeIran, Guilan, TaleshM. BakhshiKJ886455KJ886294KJ885972KJ885811KJ886133
CCTU 1007; CBS 136031Hydrangea sp.HydrangeaceaeIran, Guilan, TaleshM. BakhshiKJ886456KJ886295KJ885973KJ885812KJ886134
CCTU 1010; CBS 136032Pelargonium hortorum*GeraniaceaeIran, Guilan, TaleshM. BakhshiKJ886457KJ886296KJ885974KJ885813KJ886135
CCTU 1021; CBS 136033Amaranthus retroflexusAmaranthaceaeIran, Guilan, FumanM. BakhshiKJ886458KJ886297KJ885975KJ885814KJ886136
CCTU 1027; CBS 136034Lepidium sativum*BrassicaceaeIran, Guilan, ChamkhalehM. BakhshiKJ886459KJ886298KJ885976KJ885815KJ886137
CCTU 1029; CBS 136035Cucurbita maxima*CucurbitaceaeIran, Guilan, RudsarM. BakhshiKJ886460KJ886299KJ885977KJ885816KJ886138
CCTU 1031; CBS 136036Urtica dioica*UrticaceaeIran, Guilan, Sowme’eh SaraM. BakhshiKJ886461KJ886300KJ885978KJ885817KJ886139
CCTU 1048; CBS 136029Xanthium strumariumAsteraceaeIran, Zanjan, TaromM. BakhshiKJ886462KJ886301KJ885979KJ885818KJ886140
CCTU 1055Hibiscus trionum*MalvaceaeIran, Ardabil, MoghanM. BakhshiKJ886463KJ886302KJ885980KJ885819KJ886141
CCTU 1059; CBS 136136Ecballium elaterium*CucurbitaceaeIran, Ardabil, MoghanM. BakhshiKJ886464KJ886303KJ885981KJ885820KJ886142
CCTU 1064Amaranthus retroflexusAmaranthaceaeIran, Ardabil, MoghanM. BakhshiKJ886465KJ886304KJ885982KJ885821KJ886143
CCTU 1068Xanthium spinosum*AsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886466KJ886305KJ885983KJ885822KJ886144
CCTU 1070; CBS 136137Gossypium herbaceum*MalvaceaeIran, Ardabil, MoghanM. BakhshiKJ886467KJ886306KJ885984KJ885823KJ886145
CCTU 1072Amaranthus blitoidesAmaranthaceaeIran, Ardabil, MoghanM. BakhshiKJ886468KJ886307KJ885985KJ885824KJ886146
CCTU 1075Raphanus sativus*BrassicaceaeIran, Guilan, Sowme’eh SaraM. BakhshiKJ886469KJ886308KJ885986KJ885825KJ886147
CCTU 1084; CBS 136156Amaranthus sp.AmaranthaceaeIran, Ardabil, MoghanM. BakhshiKJ886470KJ886309KJ885987KJ885826KJ886148
CCTU 1085Xanthium strumariumAsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886471KJ886310KJ885988KJ885827KJ886149
CCTU 1093Buxus microphylla*BuxaceaeIran, Mazandaran, Abbas abadM. BakhshiKJ886472KJ886311KJ885989KJ885828KJ886150
CCTU 1115; CBS 136139Cercis siliquastrum*CaesalpinaceaeIran, Guilan, AstaraM. BakhshiKJ886473KJ886312KJ885990KJ885829KJ886151
CCTU 1118; CBS 136140Populus deltoidesSalicaceaeIran, Guilan, AstaraM. BakhshiKJ886474KJ886313KJ885991KJ885830KJ886152
CCTU 1120Raphanus sativusBrassicaceaeIran, Guilan, TaleshM. BakhshiKJ886475KJ886314KJ885992KJ885831KJ886153
CCTU 1128; CBS 136141Phaseolus vulgaris*FabaceaeIran, Guilan, AstaraM. BakhshiKJ886476KJ886315KJ885993KJ885832KJ886154
CCTU 1130; CBS 136142Olea europaea*OleaceaeIran, Zanjan, TaromM. TorbatiKJ886477KJ886316KJ885994KJ885833KJ886155
CCTU 1136Cucurbita pepo*CucurbitaceaeIran, Guilan, AstaraM. BakhshiKJ886478KJ886317KJ885995KJ885834KJ886156
CCTU 1138Phaseolus vulgarisFabaceaeIran, Guilan, AstaraM. BakhshiKJ886479KJ886318KJ885996KJ885835KJ886157
CCTU 1139Phaseolus vulgarisFabaceaeIran, Guilan, AstaraM. BakhshiKJ886480KJ886319KJ885997KJ885836KJ886158
CCTU 1140; CBS 136143Calendula officinalis*AsteraceaeIran, Guilan, AstaraM. BakhshiKJ886481KJ886320KJ885998KJ885837KJ886159
CCTU 1141; CBS 136144Tagetes patula*AsteraceaeIran, Guilan, RudsarM. BakhshiKJ886482KJ886321KJ885999KJ885838KJ886160
CCTU 1142Phaseolus vulgarisFabaceaeIran, Guilan, TaleshM. BakhshiKJ886483KJ886322KJ886000KJ885839KJ886161
CCTU 1143; CBS 136145Datura stramonium*SolanaceaeIran, Guilan, TaleshM. BakhshiKJ886484KJ886323KJ886001KJ885840KJ886162
CCTU 1145Cucurbita sp.*CucurbitaceaeIran, Guilan, FumanM. BakhshiKJ886485KJ886324KJ886002KJ885841KJ886163
CCTU 1147Urtica dioicaUrticaceaeIran, Guilan, MasalM. BakhshiKJ886486KJ886325KJ886003KJ885842KJ886164
CCTU 1149; CBS 136146Leucanthemum superbum*AsteraceaeIran, Guilan, TaleshM. BakhshiKJ886487KJ886326KJ886004KJ885843KJ886165
CCTU 1150Buxus microphyllaBuxaceaeIran, Guilan, FumanM. BakhshiKJ886488KJ886327KJ886005KJ885844KJ886166
CCTU 1154; CBS 136147Abutilon theophrasti*MalvaceaeIran, Guilan, RashtM. BakhshiKJ886489KJ886328KJ886006KJ885845KJ886167
CCTU 1155.11Phaseolus vulgarisFabaceaeIran, Guilan, FumanM. BakhshiKJ886490KJ886329KJ886007KJ885846KJ886168
CCTU 1156Xanthium strumariumAsteraceaeIran, Guilan, RashtM. BakhshiKJ886491KJ886330KJ886008KJ885847KJ886169
CCTU 1158Xanthium strumariumAsteraceaeIran, Guilan, LangroudM. BakhshiKJ886492KJ886331KJ886009KJ885848KJ886170
CCTU 1159; CBS 136148Arachis hypogaea*FabaceaeIran, Guilan, LahijanM. BakhshiKJ886493KJ886332KJ886010KJ885849KJ886171
CCTU 1160; CBS 136149Vicia faba*FabaceaeIran, Guilan, AstaraM. BakhshiKJ886494KJ886333KJ886011KJ885850KJ886172
CCTU 1161Phaseolus vulgarisFabaceaeIran, Guilan, LahijanM. BakhshiKJ886495KJ886334KJ886012KJ885851KJ886173
CCTU 1162Citrullus lanatusCucurbitaceaeIran, Guilan, LahijanM. BakhshiKJ886496KJ886335KJ886013KJ885852KJ886174
CCTU 1164Phaseolus vulgarisFabaceaeIran, Guilan, LahijanM. BakhshiKJ886497KJ886336KJ886014KJ885853KJ886175
CCTU 1167; CBS 136150Anubias sp.*AraceaeIran, Guilan, KiashahrM. BakhshiKJ886498KJ886337KJ886015KJ885854KJ886176
CCTU 1168Phaseolus vulgarisFabaceaeIran, Guilan, KiashahrM. BakhshiKJ886499KJ886338KJ886016KJ885855KJ886177
CCTU 1171Raphanus sativusBrassicaceaeIran, Guilan, KiashahrM. BakhshiKJ886500KJ886339KJ886017KJ885856KJ886178
CCTU 1172??Iran, Guilan, KiashahrM. BakhshiKJ886501KJ886340KJ886018KJ885857KJ886179
CCTU 1175Phaseolus vulgarisFabaceaeIran, Guilan, Sowme’eh SaraM. BakhshiKJ886502KJ886341KJ886019KJ885858KJ886180
CCTU 1195Datura stramoniumSolanaceaeIran, Guilan, TaleshM. BakhshiKJ886503KJ886342KJ886020KJ885859KJ886181
CCTU 1198; CBS 136151Acer velutinum*AceraceaeIran, Mazandaran, RamsarM. BakhshiKJ886504KJ886343KJ886021KJ885860KJ886182
CCTU 1204Abutilon theophrastiMalvaceaeIran, Ardabil, MoghanM. BakhshiKJ886505KJ886344KJ886022KJ885861KJ886183
CCTU 1209; CBS 136152Glycine max*FabaceaeIran, Ardabil, MoghanM. BakhshiKJ886506KJ886345KJ886023KJ885862KJ886184
CCTU 1210Glycine maxFabaceaeIran, Ardabil, MoghanM. BakhshiKJ886507KJ886346KJ886024KJ885863KJ886185
CCTU 1211Glycine maxFabaceaeIran, Ardabil, MoghanM. BakhshiKJ886508KJ886347KJ886025KJ885864KJ886186
CCTU 1212; CBS 136153Silybum marianum*AsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886509KJ886348KJ886026KJ885865KJ886187
CCTU 1216Ecballium elateriumCucurbitaceaeIran, Ardabil, MoghanM. BakhshiKJ886510KJ886349KJ886027KJ885866KJ886188
CCTU 1218Hibiscus trionumMalvaceaeIran, Ardabil, MoghanM. BakhshiKJ886511KJ886350KJ886028KJ885867KJ886189
CCTU 1223; CBS 136154Eclipta prostrata*AsteraceaeIran, Guilan, TaleshM. BakhshiKJ886512KJ886351KJ886029KJ885868KJ886190
Cercospora iranicaCCTU 1137; CBS 136124 (ex-type)Vicia fabaFabaceaeIran, Guilan, AstaraM. BakhshiKJ886513KJ886352KJ886030KJ885869KJ886191
CCTU 1137.2Vicia fabaFabaceaeIran, Guilan, AstaraM. BakhshiKJ886514KJ886353KJ886031KJ885870KJ886192
CCTU 1196; CBS 136123Hydrangea sp.HydrangeaceaeIran, Mazandaran, RamsarM. BakhshiKJ886515KJ886354KJ886032KJ885871KJ886193
Cercospora pseudochenopodiiCCTU 1038; CBS 136022(ex-type) Chenopodium sp.ChenopodiaceaeIran, Zanjan, TaromM. BakhshiKJ886516KJ886355KJ886033KJ885872KJ886194
CCTU 1045Chenopodium sp.ChenopodiaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886517KJ886356KJ886034KJ885873KJ886195
CCTU 1176Chenopodium albumChenopodiaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886518KJ886357KJ886035KJ885874KJ886196
Cercosporacf. richardiicolaCCTU 1004Bidens tripartita*AsteraceaeIran, Guilan, TaleshM. BakhshiKJ886519KJ886358KJ886036KJ885875KJ886197
Cercospora rumicisCCTU 1121Urtica dioica*UrticaceaeIran, Guilan, TaleshM. BakhshiKJ886520KJ886359KJ886037KJ885876KJ886198
CCTU 1123Rumex crispusPolygonaceaeIran, Guilan, TaleshM. BakhshiKJ886521KJ886360KJ886038KJ885877KJ886199
CCTU 1129Rumex crispusPolygonaceaeIran, Guilan, TaleshM. BakhshiKJ886522KJ886361KJ886039KJ885878KJ886200
Cercospora solaniCCTU 1043; CBS 136038Solanum nigrumSolanaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886523KJ886362KJ886040KJ885879KJ886201
CCTU 1050Solanum nigrumSolanaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886524KJ886363KJ886041KJ885880KJ886202
Cercospora sorghicolaCCTU 1173; CBS 136448(ex-type) Sorghum halepensePoaceaeIran, Guilan, KiashahrM. BakhshiKJ886525KJ886364KJ886042KJ885881KJ886203
CCTU 1173.2Sorghum halepensePoaceaeIran, Guilan, KiashahrM. BakhshiKJ886526KJ886365KJ886043KJ885882KJ886204
Cercospora sp. GCCTU 1002Celosia cristataAmaranthaceaeIran, Guilan, TaleshM. BakhshiKJ886527KJ886366KJ886044KJ885883KJ886205
CCTU 1015; CBS 136024Plantago majorPlantaginaceaeIran, Guilan, TaleshM. BakhshiKJ886528KJ886367KJ886045KJ885884KJ886206
CCTU 1020; CBS 136023Sorghum halepensePoaceaeIran, Guilan, TaleshM. BakhshiKJ886529KJ886368KJ886046KJ885885KJ886207
CCTU 1030; CBS 136026Bidens tripartitaAsteraceaeIran, Guilan, TaleshM. BakhshiKJ886530KJ886369KJ886047KJ885886KJ886208
CCTU 1046Plantago majorPlantaginaceaeIran, Zanjan, TaromM. BakhshiKJ886531KJ886370KJ886048KJ885887KJ886209
CCTU 1053; CBS 136027Cichorium intybusAsteraceaeIran, Guilan, Sowme’eh SaraM. BakhshiKJ886532KJ886371KJ886049KJ885888KJ886210
CCTU 1054Amaranthus sp.AmaranthaceaeIran, Ardabil, MoghanM. BakhshiKJ886533KJ886372KJ886050KJ885889KJ886211
CCTU 1058?AsteraceaeIran, Ardabil, MoghanM. BakhshiKJ886534KJ886373KJ886051KJ885890KJ886212
CCTU 1079; CBS 136025Amaranthus retroflexusAmaranthaceaeIran, Ardabil, MoghanM. BakhshiKJ886535KJ886374KJ886052KJ885891KJ886213
CCTU 1090Abutilon theophrastiMalvaceaeIran, Ardabil, MoghanM. BakhshiKJ886536KJ886375KJ886053KJ885892KJ886214
CCTU 1116Plantago majorPlantaginaceaeIran, Zanjan, TaromM. BakhshiKJ886537KJ886376KJ886054KJ885893KJ886215
CCTU 1122Amaranthus sp.AmaranthaceaeIran, Guilan, TaleshM. BakhshiKJ886538KJ886377KJ886055KJ885894KJ886216
CCTU 1144; CBS 136130Cucurbita maximaCucurbitaceaeIran, Guilan, MasalM. BakhshiKJ886539KJ886378KJ886056KJ885895KJ886217
CCTU 1197Bidens tripartitaAsteraceaeIran, Guilan, TaleshM. BakhshiKJ886540KJ886379KJ886057KJ885896KJ886218
Cercospora sp. TCCTU 1148; CBS 136125Coreopsis sp.AsteraceaeIran, Guilan, RashtM. BakhshiKJ886541KJ886380KJ886058KJ885897KJ886219
CCTU 1148.2Coreopsis sp.AsteraceaeIran, Guilan, RashtM. BakhshiKJ886542KJ886381KJ886059KJ885898KJ886220
Cercospora violaeCCTU 1025Viola sp.ViolaceaeIran, Mazandaran, NowshahrM. BakhshiKJ886543KJ886382KJ886060KJ885899KJ886221
Cercospora zebrinaCCTU 1012; CBS 136129Medicago sp.FabaceaeIran, Guilan, TaleshM. BakhshiKJ886544KJ886383KJ886061KJ885900KJ886222
CCTU 1039Alhagi camelorum*FabaceaeIran, Zanjan, TaromM. BakhshiKJ886545KJ886384KJ886062KJ885901KJ886223
CCTU 1110Medicago sativaFabaceaeIran, Zanjan, TaromM. BakhshiKJ886546KJ886385KJ886063KJ885902KJ886224
CCTU 1180Medicago sativaFabaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886547KJ886386KJ886064KJ885903KJ886225
CCTU 1181Trifolium repensFabaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886548KJ886387KJ886065KJ885904KJ886226
CCTU 1185Vicia sp.*FabaceaeIran, West Azerbaijan, KhoyM. ArzanlouKJ886549KJ886388KJ886066KJ885905KJ886227
CCTU 1225Medicago sativaFabaceaeIran, East Azerbaijan, MarandM. BakhshiKJ886550KJ886389KJ886067KJ885906KJ886228
CCTU 1239; CBS 135977Vitis vinifera*VitaceaeIran, East Azerbaijan, KaleibarM. ArzanlouKJ886551KJ886390KJ886068KJ885907KJ886229
Cercospora cf. zinniaeCCTU 1003Zinnia elegansAsteraceaeIran, Guilan, TaleshM. BakhshiKJ886552KJ886391KJ886069KJ885908KJ886230
Ramularia endophyllaCBS 113265Leaf litterThe Netherlands, UtrechtG.J.M. VerkleyKF251329KF253276KF253634KF253981KP207603

1 CBS: CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands; CCTU: Culture Collection of Tabriz University, Tabriz, Iran.

2 ITS: internal transcribed spacers and intervening 5.8S nrDNA; TEF1-α: translation elongation factor 1-alpha; ACT: actin; CAL: calmodulin; HIS: histone H3

* new host records.

DNA extraction, amplification and sequencing

Isolates were grown on MEA for 10 d at 25 °C in the dark, and genomic DNA was extracted using the protocol of Möller et al. (1992). The DNA samples were subsequently diluted 50–100 times in preparation for further DNA amplification reactions. Five loci were sequenced for each isolate. The primers V9G (de Hoog & Gerrits van den Ende 1998) and ITS4 (White et al. 1990) were used to amplify part of the nuclear rRNA operon (ITS) spanning the 3’ end of 18S rRNA gene, the first internal transcribed spacer, the 5.8S rRNA gene, the second ITS region and the 5’ end of the 28S rRNA gene. Part of the actin gene (ACT) was amplified using the primer set ACT-512F and ACT-783R (Carbone & Kohn 1999), whereas the primer set CylH3F and CylH3R (Crous et al. 2004c) was used to amplify part of the histone H3 gene (HIS). Primers employed for the amplification of translation elongation factor 1-alpha (TEF1-α) included EF1-728F and EF1-986R (Carbone & Kohn 1999) or EF-2 (O‘Donnell et al. 1998), while the primer set CAL-228F and CAL-737R (Carbone & Kohn 1999) or CAL-2Rd (Groenewald et al. 2013) was used to amplify part of the calmodulin gene (CAL). The PCRs were performed in a total volume of 12.5 μL. The ITS, HIS, TEF1-α and ACT mixtures contained 5–10 ng genomic DNA, 1X PCR buffer (Bioline, London, UK), 2 mM MgCl2 (Bioline), 40 μM of each dNTP, 0.7 μL DMSO, 0.2 μM of each primer and 0.5 Unit GoTaq® Flexi DNA polymerase (Promega, Madison, USA). The CAL PCR mixture differed from the original mix by containing 2.5 mM MgCl2 and 10–20 ng genomic DNA. The PCR conditions for ITS, HIS, TEF1-α and ACT consisted of an initial denaturation step of 5 min at 95 °C followed by 40 cycles of 30 s at 95 °C, 30 s at 52 °C and 45 s at 72 °C, then 5 min at 72 °C and PCR conditions for CAL consisted of an initial denaturation step of 5 min at 95 °C followed by 40 cycles of 30 s at 95 °C, 40 s at 58 °C/55 °C and 50 s at 72 °C using respectively CAL-737R or CAL-2Rd as reverse primer and final elongation step of 5 min at 72 °C. Following PCR amplification, amplicons were visualized on a 1.2 % agarose gel stained with GelRed™ (Biotium, Hayward, CA, USA) and viewed under ultra-violet light and sizes of amplicons were determined against a HyperLadder™ I molecular marker (Bioline). The ABI Prism BigDye® Terminator Cycle sequencing reaction kit v. 3.1 (Applied Biosystems™, Foster City, CA, USA) was used for sequencing of PCR products in both directions using the same primers pairs used for amplification, following the manufacturer‘s instructions. Sequencing products were purified through a 96-well multiscreen HV plate (Millipore) containing Sephadex G-50 (Sigma Aldrich, St. Louis, MO) as outlined by the manufacturer and analysed with an ABI Prism 3730XL Automated DNA analyzer (Life Technologies Europe BV, Applied Biosystems™, Bleiswijk, The Netherlands) according to manufacturer‘s recommendation.

Phylogenetic analyses

The raw trace files were edited using MEGA v. 5 (Tamura et al. 2011) and a consensus sequence was generated manually for each set of trace files from a given reaction. The generated sequences were compared with other fungal DNA sequences from NCBIs GenBank sequence database using BLAST; sequences with high similarity were added to the alignments. Sequences of Ramularia endophylla (isolate CBS 113265) were used as the outgroup based on availability and phylogenetic relationship with Cercospora. A basic alignment of the obtained sequences in this study together with the sequence data from GenBank and the outgroup sequences was first done using MAFFT v. 7 (http://mafft.cbrc.jp/alignment/server/index.html) (Katoh et al. 2002); and when considered necessary, manual adjustments were made by eye in MEGA v. 5 (Tamura et al. 2011).

Phylogenetic analyses were based on Bayesian inference (BI). For this purpose, the best nucleotide substitution model for each partition was determined using MrModeltest v. 2.2 (Nylander 2004). Based on the results of MrModeltest, a phylogenetic reconstruction under optimal criteria per partition was performed for the aligned combined dataset and phylogenetic trees were generated using MrBayes v. 3.2.1. (Ronquist & Huelsenbeck 2003). A Markov Chain Monte Carlo (MCMC) algorithm of four chains was started in parallel from a random tree topology with the heating parameter set at 0.15 and lasted until the average standard deviation of split frequencies came below 0.01. Trees were saved every 1 000 generations, the first 25 % of saved trees were discarded as the ‘burn-in’ phase and posterior probabilities (PP) determined from the remaining trees.

The resulting phylogenetic tree was printed with Geneious v. 5.6.7 (Drummond et al. 2012). Newly generated sequences in this study were deposited in NCBIs GenBank nucleotide database (http://www.ncbi.nlm.nih.gov; Table 1) and alignments and phylogenetic trees in TreeBASE (www.treebase.org). The GenBank accession numbers for the strains obtained from NCBI can be found in Groenewald et al. (2013).

Taxonomy

All taxonomic descriptions are based on structures from herbarium material. Diseased leaf tissues were observed under a stereo-microscope and relevant morphological structures (stromata, conidiophores and conidia) were picked up from lesions with a sterile inoculation needle and mounted on glass slides in clear lactic acid. Thirty measurements were made at × 1 000 magnification using a Nikon Eclipse 80i light microscope for each microscopic structure, and 95 % confidence intervals were derived for the measurements with extreme values given in parentheses. High-resolution photographic images of microscopic fungal structures were captured with a Nikon digital sight DS-f1 high definition colour camera mounted on the Nikon Eclipse 80i light microscope. Adobe Photoshop CS3 was used for the final editing of acquired images and photographic preparations. Colony colours on MEA were determined after 1 mo at 25 °C in the dark in duplicate. The mycological colour charts of Rayner (1970) were used to define colours of the fungal colonies. Nomenclatural novelties and descriptions were deposited in MycoBank (www.MycoBank.org; Crous et al. 2004a). The naming system for tentatively applied names used by Groenewald et al. (2013) is continued in this manuscript to simplify comparison between the studies.

RESULTS

DNA sequencing and phylogenetic analysis

A total of 161 Cercospora isolates corresponding to 74 host species and 28 host families were collected for DNA sequence analysis from the north and north-western parts of Iran. Approximately 700, 300, 200, 450 and 400 bp were obtained for ITS, TEF1-α, ACT, CAL and HIS loci, respectively.

The resulting concatenated alignment contains 294 ingroup taxa (including 133 taxa from NCBI, and 161 taxa from this study) with a total of 1 634 characters (including alignment gaps). Ramularia endophylla (isolate CBS 113265) was used as the outgroup taxon. Four sets of four Ns were used in the alignment to separate adjacent loci and were excluded from the phylogenetic analyses. The gene boundaries were 1–474 bp for ITS, 479–802 bp for TEF1-α, 807–1 006 bp for ACT, 1 011–1 268 bp for CAL and 1 273–1 634 bp for HIS. Based on the results of MrModeltest, a GTR+G model with a gamma-distributed rate variation for ITS, ACT and CAL, and HKY+G with gamma-distributed rates for TEF1-α were suggested while HIS required HKY+I+G with inverse gamma distributed. All partitions had dirichlet base frequencies. From this alignment 1 618 characters were used for the Bayesian analysis; these contained 625 unique site patterns (54, 211, 112, 124 and 124 for ITS, TEF1-α, ACT, CAL and HIS, respectively). The Bayesian analysis lasted 28 720 000 generations and delineated a total of 57 442 trees. After discarding the first 25 % of sampled trees (the first 7 180 000 generations) for burn-in, the consensus trees and posterior probabilities were calculated from the remaining 43 082 trees.

All genes were also assessed individually using Bayesian analysis under the above-mentioned substitution models, for each data partition (data not shown). The ITS region had limited resolution for almost all species in Cercospora, and was only able to distinguish C. chenopodii, C. solani and C. sorghicola from the other species examined. Based on the TEF1-α region, we were able to distinguish seven of the 20 species including C. chenopodii, C. conyzae-canadensis, C. rumicis, C. solani, C. sorghicola, C. violae and C. cf. zinniae, whereas nine of the 20 species including C. althaeina, C. chenopodii, C. conyzaecanadensis, C. cylindracea, C. pseudochenopodii, C. solani, C. sorghicola, C. violae and C. cf. zinniae were distinguished in the ACT phylogeny. Based on the CAL region, we were able to differentiate eight of the 20 lineages, i.e. C. armoraciae, C. beticola, C. conyzae-canadensis, C. solani, C. sorghicola, Cercospora sp. T, C. violae and C. cf. zinniae. Based on the HIS region, we distinguished 10 of the 20 lineages, including C. chenopodii, C. conyzae-canadensis, C. cylindracea, C. pseudochenopodii, C. rumicis, C. solani, C. sorghicola, Cercospora sp. G sensu Groenewald et al. (2013), C. violae and C. zebrina.

Based on results of the multigene concatenated BI phylogenies, the posterior probability (PP) support for the grouping of most species ranged from 1 to 0.97 as found by Groenewald et al. (2013). However support for deeper nodes were often lower, indicating that the branching may be uncertain for the root of these species. As previously stated by Groenewald et al. (2013), no single locus was found which could reliably distinguish all species and, occurrences of the same sequence(s) shared between multiple species in one locus, were observed.

Taxonomy

The Consolidated Species Concept was employed in this study to distinguish species, revealing a rich diversity among the Cercospora species studied. Twenty lineages of Cercospora from Iran were resolved based on the clustering and support in the Bayesian tree obtained from the combined ITS, TEF1-α, ACT, CAL and HIS alignment (Fig. 1). Data are alphabetically summarised in Table 1. Eight species including C. althaeina, C. apii (species complex), C. armoraciae (species complex), C. beticola, C. chenopodii, C. rumicis, C. violae and C. zebrina were assigned to existing species names. Three more species including C. cf. flagellaris (species complex), C. cf. richardiicola and C. cf. zinniae were morphologically similar to existing species, but as explained by Groenewald et al. (2013), these names could not be applied in cases where the ex-type strain was unavailable. In these cases, species were indicated with ‘cf.’ in the species name.

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Consensus phylogram (50 % majority rule) of 43 082 trees resulting from a Bayesian analysis of the combined 5-gene sequence alignment using MrBayes v. 3.2.1. Bayesian posterior probabilities are indicated with colour-coded branches and numbers (see legend) and the scale bar indicates 0.2 expected changes per site. Lineages from Iran are indicated in coloured blocks and species names in black text. Hosts and provinces of origin are indicated in green and brown text, respectively. The tree was rooted to Ramularia endophylla (isolate CBS 113265).

In addition, several new hosts were recognised for the previously known Cercospora species including C. apii, C. armoraciae, C. beticola, C. cf. richardiicola, C. rumicis, Cercospora sp. G and C. zebrina. Novel host records are shown with an asterisk in Table 1. Cercospora cf. flagellaris and Cercospora sp. G sensu Groenewald et al. (2013), two species with wide host ranges (infecting 18 and six host families respectively in this study), were common species in the sampled areas, and sometimes these two species infected the same host at the same time.

Furthermore, eight additional lineages were recognised in this study. Identification of these lineages required careful morphological comparison and consideration of host-fungus relationships, as well as knowledge of the relevant scientific literature (Crous & Braun 2003) and databases (Systematic Mycology and Microbiology Laboratory (SMML), http://nt.ars-grin.gov/fungaldatabases/fungushost/fungushost.cfm).

Cercospora chenopodii Fresen., Beitr. Mykol.: 92. 1863 — Fig. 2

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Cercospora chenopodii (CCTU 1033). a. Leaf spots; b. c. fasciculate conidiophores; d–g. conidia. — Scale bars = 10 μm.

Additional synonyms in Groenewald et al. (2013)

Description in planta — Leaf spots amphigenous, distinct, circular to subcircular, 2–6 mm diam, pale brown with black dots (stroma with conidiophores), definite margin, surrounded by a dark pink border. Mycelium internal. Caespituli amphigenous, brown. Conidiophores aggregated in dense fascicles (5–35), arising from the upper cells of a moderately developed brown stroma, up to 70 μm wide; conidiophores medium brown, becoming pale brown towards the apex, 2–8-septate, straight to variously curved, unbranched, (40–)62–72(–90) × 4–6 μm, width of conidiogenous cells immediately behind the fertile region is often narrower. Conidiogenous cells intercalary and terminal, unbranched, pale brown, smooth, proliferating sympodially, 20–50 × 4–6 μm, mostly mono-local, sometimes multi-local; loci thickened, darkened, protuberant, refractive, apical or lateral, 2–3.5 μm diam. Conidia solitary, smooth, subcylindrical, straight to slightly curved, hyaline, distinctly (0–) 2 – 4 (– 5)-septate, apex obtuse, base obconically truncate, sometimes constricted at the septa, (20–)27– 32(–40) × 5– 6(–7) μm; hila thickened, darkened, refractive, 2 – 4 μm diam.

Specimens examined. IRAN, Guilan Province, Talesh, on leaves of Chenopodium album (Chenopodiaceae), Sept. 2011, M. Bakhshi, CCTU 1033; Guilan Province, Bandar-e Anzali, on leaves of C. album (Chenopodiaceae), June 2012, M. Bakhshi, CCTU 1060; Guilan Province, Langroud, on leaves of C. album (Chenopodiaceae), Aug. 2012, M. Bakhshi, CCTU 1157; Guilan Province, Lahijan, on leaves of C. album (Chenopodiaceae), Aug. 2012, M. Bakhshi, CCTU 1163.

Cercospora convolvulicola M. Bakhshi, Arzanlou, Babaiahari, Crous & U. Braun, sp. nov. — MycoBank MB809116; Fig. 3

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Cercospora convolvulicola (CBS 136126). a. Leaf spots; b. c. fasciculate conidiophores; d–j. conidia. — Scale bars = 10 μm.

Etymology. Named after the host genus on which it was collected, Convolvulus.

Description in planta — Leaf spots circular to subcircular, 2–8 mm, grey-brown to brown, not surrounded by margin of different colour. Mycelium internal. Caespituli amphigenous, brown. Conidiophores straight or sinuously geniculate, in dense fascicles, arising from the upper cells of a well-developed, intraepidermal and substomatal, brown stroma, up to 40 μm diam; conidiophores pale brown to brown, simple, rarely branched, moderately thick-walled, irregular in width, attenuated at the upper portion, often constricted at septa and proliferating point, 35–50(–70) × (3–)4–6 μm, 2–5-septate. Conidiogenous cells intercalary and terminal, proliferating sympodially, 10–20 × 3–5.5 μm, multi-local; loci distinctly thickened, apical, lateral or formed on the shoulders caused by geniculation, sometimes circumspersed, protuberant, 1.5–2.5 μm. Conidia solitary, hyaline, subcylindrical to obclavate, straight or slightly curved, truncate to somewhat obconically truncate at the base, subacute or subobtusely rounded at the apex, 35–50(–65) × (2.5–)3.5–4.5 μm, 3–8-septate, guttulate; hila thickened, darkened, refractive, 1.5–2.5 μm diam.

Cultural characteristics — Colonies on MEA reaching 55 mm diam after 20 d at 25 °C in the dark; flat with smooth, even margins and moderate aerial mycelium; surface olivaceous-grey, reverse dark iron-grey.

Specimens examined. IRAN, Ardabil Province, Moghan, on Convolvulus arvensis (Convolvulaceae), Oct. 2011, M. Bakhshi (holotype IRAN 16454 F, culture ex-type CCTU 1083 = CBS 136126); Moghan, on C. arvensis (Convolvulaceae), Oct. 2011, M. Bakhshi, CCTU 1083.2.

Notes — Based on individual gene trees, the two isolates representing this species are never supported in their own clade; in the TEF1-α and ACT phylogenies, they are intermixed with C. cf. flagellaris and C. cf. brunkii; in the CAL phylogeny with C. apii and C. cf. brunkii, and in the HIS phylogeny with C. rodmanii, C. cf. zinniae and Cercospora spp. N, P and Q sensu Groenewald et al. (2013). Shared alleles are the likely cause for the separate position of C. convolvulicola in the combined phylogeny (Fig. 1, part 3). Cercospora convolvulicola is sister to C. cf. brunkii and appears to be specific to Convolvulus arvensis. The only species known from Convolvulus arvensis, is C. ipomoea. Cercospora cf. ipomoea (tentative name for C. ipomoea) has a different phylogenetic position. Cercospora convolvulicola differs morphologically from C. ipomoea, by having dense conidiophores and shorter, guttulate, subcylindrical to obclavate conidia (Fig. 3).

Cercospora conyzae-canadensis M. Bakhshi, Arzanlou, Babai-ahari, Crous & U. Braun, sp. nov. — MycoBank MB809117; Fig. 4

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Cercospora conyzae-canadensis (CBS 135978). a. Leaf spots; b. c. fasciculate conidiophores; d–h. conidia. — Scale bars = 10 μm.

Etymology. Named after the host plant from which it was collected, Conyza canadensis.

Description in planta — Leaf spots amphigenous, circular, 1–4 mm diam, grey to pale brown with dark brown margins. Mycelium internal. Caespituli amphigenous, brown. Conidiophores aggregated in loose fascicles (3–15), arising from a weakly developed, intraepidermal and substomatal, dark brown stroma, up to 30 μm diam; conidiophores brown to dark brown, 2–6-septate, straight to geniculate-sinuous due to sympodial proliferation, simple, thick-walled, uniform in width, often constricted at the proliferating point, (57–)97–112(–140) × 4.5–5.5 μm. Conidiogenous cells intercalary and terminal, pale brown to brown, proliferating sympodially, 20–40 × 4–5.5 μm, multi-local; loci distinctly thickened, darkened and somewhat refractive, apical or formed on shoulders caused by sympodial proliferation, 2–3.5 μm diam. Conidia solitary, filiform to obclavate-cylindrical, straight to slightly curved, hyaline, (32–)60–94(–170) × 3.5–5.5 μm, (3–)7–12(–17)-septate, with subobtusely rounded apices and truncate to obconically truncate bases; hila thickened, darkened, refractive, 1.5–2.5 μm diam.

Cultural characteristics — Colonies on MEA reaching 24 mm diam after 20 d at 25 °C in the dark; erumpent with smooth, irregular margins and sparse aerial mycelium; dark olivaceous-green on the surface, dark blue-green underneath.

Specimens examined. IRAN, Guilan Province, Talesh, on Conyza canadensis (Asteraceae), Nov. 2012, M. Bakhshi (holotype IRAN 16455 F, culture ex-type CCTU 1119 = CBS 135978); Talesh, on C. canadensis (Asteraceae), Aug. 2011, M. Bakhshi, CCTU 1008; Zanjan Province, Tarom, on C. canadensis (Asteraceae), Aug. 2012, M. Bakhshi, CCTU 1105.

Notes — Cercospora conyzae-canadensis must be regarded as a new species, based on its distinct phylogenetic position. In the individual gene trees (ACT, TEF1-α, CAL and HIS), it is distinguished from all other species. In the combined tree (Fig. 1, part 1), it is a sister taxon to the clade including C. cf. modiolae and Cercospora sp. E sensu Groenewald et al. (2013). Three species of Cercospora, including C. bidentis, C. erigeronicola and C. nilghirensis, have been reported from Conyza. Cercospora conyzae-canadensis is morphologically distinguished from those species by its moderately developed stroma, loose fascicles and dark brown conidiophores. Cercospora erigeronicola is distinct in having shorter and narrower, 0–3-septate conidia, 15–45 × 2–3.5 μm. Cercospora conyzae-canadensis is morphologically close to C. nilghirensis in conidial shape and size. However C. nilghirensis, described from India on Conyza ambigua, lacks stromata and has numerous longer conidiophores that are densely fasciculate. Cercospora conyzaecanadensis appears to be specific to Conyza canadensis.

Cercospora cylindracea M. Bakhshi, Arzanlou, Babai-ahari, Crous & U. Braun, sp. nov. — MycoBank MB809118; Fig. 5

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Cercospora cylindracea (CBS 138580). a. Leaf spots on Cichorium intybus; b. leaf spots on Lactuca serriola; c–e. fasciculate conidiophores; f–k. conidia. — Scale bars = 10 μm.

Etymology. Name derived from the cylindrical conidia.

Description in planta — Leaf spots distinct, circular to subcircular, sometimes angular, pale brown, with broad brown margin, sometimes appearing as an eye spot, 1–7 mm diam. Mycelium internal. Caespituli amphigenous, brown. Conidiophores in divergent fascicles (4–25), arising from the upper cells of a moderately to well-developed, intraepidermal and substomatal, brown stroma, up to 30 μm diam; conidiophores pale brown to brown, thick-walled, 1–6-septate, straight, sinuous to distinctly geniculate, flexuous, (35–)55–65(–90) × 4–5.5 μm, irregular in wide, conically narrowed at the apex. Conidiogenous cells terminal or intercalary, unbranched, pale brown, smooth, proliferating sympodially, 15–30 × 3.5–5 μm, multi-local; loci thickened, darkened, refractive, protuberant, apical, lateral or circumspersed, 1.5–2.5 μm diam. Conidia solitary, subcylindrical to cylindrical, straight to mildly curved, hyaline, distinctly 1–10-septate, obtuse at the apex, subtruncate at the base, (30–)45–60(–90) × 3.5–5.5 μm; hila thickened, darkened, refractive, 1.5–2.5 μm diam.

Cultural characteristics — Colonies on MEA reaching 62 mm diam after 20 d at 25 °C in the dark; erumpent, folded, with smooth, even margins and sparse to moderate aerial mycelium; surface olivaceous-grey, reverse dark olivaceous-grey.

Specimens examined. IRAN, Ardabil Province, Moghan, on Lactuca serriola (Asteraceae), Sept. 2011, M. Bakhshi (holotype IRAN 16468 F, culture ex-type CCTU 1081 = CBS 138580); Moghan, on L. serriola (Asteraceae), Oct. 2012, M. Bakhshi, CCTU 1207; West Azerbaijan Province, Khoy, on Cichorium intybus (Asteraceae), June 2011, M. Arzanlou, CCTU 1016; Khoy, on L. serriola (Asteraceae), Sept. 2011, M. Arzanlou, CCTU 1044 = CBS 136021; Khoy, on L. serriola (Asteraceae), Sept. 2011, M. Arzanlou, CCTU 1049; Khoy, on L. serriola (Asteraceae), Sept. 2012, M. Arzanlou, CCTU 1183; Khoy, on L. serriola (Asteraceae), Sept. 2012, M. Arzanlou, CCTU 1189; Zanjan Province, Tarom, on C. intybus (Asteraceae), Oct. 2011, M. Bakhshi, CCTU 1114.

Notes — Cercospora cylindracea clusters as a sister taxon to the C. althaeina clade in the combined tree (Fig. 1, part 3). The host range of C. cylindracea is limited to Lactuca serriola and Cichorium intybus (both in the Asteraceae). Cercospora cylindracea is distinguished from C. althaeina in the HIS and ACT phylogenies but not in the TEF1-α phylogeny. In the CAL phylogeny, isolates are intermixed with those of C. zebrina, Cercospora sp. L sensu Groenewald et al. (2013) and C. althaeina. Three species of Cercospora including C. apii, C. lactucasativae and C. cichorii, are known from Lactuca serriola and Cichorium intybus. Cercospora cylindracea is separated in the combined gene tree from C. apii and C. lactucae-sativae as circumscribed in Groenewald et al. (2013) who studied Japanese material on Lactuca satica. Cercospora cylindracea differs from C. cichorii and C. lactucae-sativae by its cylindrical to subcylindrical conidia. Furthermore, the conidiogenous loci in C. lactucae-sativae are broader, 2.5–3.5 μm, than in C. cylindracea.

Cercospora iranica M. Bakhshi, Arzanlou, Babai-ahari, Crous & U. Braun, sp. nov. — MycoBank MB809119; Fig. 6

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Cercospora iranica (CBS 136124). a. Leaf spots; b. fasciculate conidiophores; c–h. conidia. — Scale bars = 10 μm.

Etymology. Named after Iran, the country of the type location.

Description in planta — Leaf spots amphigenous, circular, 1–7 mm, first appearing as red-brown spots, later centre becoming grey with red-brown borders on upper and lower surface. Mycelium internal. Caespituli amphigenous, brown. Conidiophores aggregated in moderately dense fascicles (8–20), arising from a well-developed, erumpent, dark brown stroma, up to 40 μm diam; conidiophores brown, becoming pale brown towards the apex, 2–6-septate, straight to geniculate-sinuous due to sympodial proliferation, simple, uniform in width, sometimes constricted at the proliferating point, (30–)62–71(–90) × 4–5.5(–6) μm. Conidiogenous cells intercalary and terminal, pale brown to brown, proliferating sympodially, 15–35 × 4–5 μm, multi-local; loci distinctly thickened, darkened and somewhat refractive, apical, lateral or formed on shoulders caused by geniculation, 2–3.5 μm diam. Conidia solitary, obclavate when smaller, longer ones filiform to acicular, straight to slightly curved, hyaline, (27–)52–67(–95) × 2–4 μm, (3–)7–10(–14)-septate, with subobtusely rounded apices and truncate or long obconically truncate bases; hila thickened, darkened, refractive, 1.5–2 μm diam.

Cultural characteristics — Colonies on MEA reaching 60 mm diam after 20 d at 25 °C in the dark; erumpent with smooth, even margins and moderate aerial mycelium; surface pale grey-olivaceous in centre, vinaceous-grey in outer region, reverse iron-grey in centre, dark pink-grey in outer region.

Specimens examined. IRAN, Guilan Province, Astara, on leaves of Vicia faba (Fabaceae), June 2012, M. Bakhshi (holotype IRAN 16466 F, culture ex-type CCTU 1137 = CBS 136124); Astara, on leaves of V. faba (Fabaceae), June 2012, M. Bakhshi, CCTU 1137.2; Mazandaran Province, Ramsar, on leaves of Hydrangea sp. (Hydrangeaceae), Sept. 2012, M. Bakhshi, CCTU 1196 = CBS 136123.

Notes — In the TEF1-α, HIS and ACT phylogeny, isolates of C. iranica and Cercospora sp. T cluster together in a distinct well-supported clade. In the CAL phylogeny, C. iranica forms a distinct clade, whereas Cercospora sp. T cannot be distinguished from Cercospora spp. M, O, P and Q (sensu Groenewald et al. 2013), nor from C. alchemillicola and C. cf. sigesbeckiae. The different CAL sequences explain the basal position of Cercospora sp. T to the C. iranica clade in the combined phylogeny (Fig. 1, part 1). Cercospora zonata, the causal agent of Cercospora leaf spot of faba beans (Kimber 2011) is morphologically quite distinct from C. iranica in having much broader (3–6 μm) obclavate-cylindrical conidia with short obconical base and larger hila, 2–2.5 μm wide (various collections examined, including topotype material of C. zonata: on Vicia faba, Portugal, May 1884, F. Moller, Rabenh., Fung. Eur. Exs. 3294, B, HAL). Caespituli that arise from a well-developed, erumpent stroma on the leaf surface is a unique morphological character of this species on Vicia faba.

Cercospora pseudochenopodii M. Bakhshi, Arzanlou, Babaiahari & Crous, sp. nov. — MycoBank MB809120; Fig. 7

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Cercospora pseudochenopodii (CBS 136022). a. Leaf spots; b. c. fasciculate conidiophores; d–h. conidia. — Scale bars = 10 μm.

Etymology. Named after its superficial resemblance to Cercospora chenopodii.

Description in planta — Leaf spots amphigenous, circular to irregular, 5–12 mm diam, pale brown, with concentric rings on adaxial and abaxial surface (stroma with conidiophores), indefinite margin, not surrounded by a border of different colour. Mycelium internal. Caespituli amphigenous, brown. Conidiophores aggregated in dense fascicles (8–40), emerging through stomatal openings or erumpent through the cuticle, arising from the upper cells of a moderately developed brown stroma, up to 60 μm wide; conidiophores pale brown to brown, 2–5-septate, thick-walled, mainly straight, sometimes geniculate in upper part, unbranched, almost uniform in width, (32–)39–45(–60) × (3.5–)4.5–5(–6.5) μm. Conidiogenous cells terminal, unbranched, pale brown, smooth, tapering to flat-tipped apical loci, proliferating sympodially, 10–30 × 3.5–6.5 μm, mostly mono-local, sometimes multi-local; loci apical or formed on shoulders caused by geniculation, thickened, darkened, protuberant, somewhat refractive, 2–4 μm diam. Conidia solitary, guttulate, cylindrical to subcylindrical, straight to slightly curved, hyaline, (0–)2–4(–5)-septate, apex obtuse, base obconically truncate, (25–)37–44.5(–70) × (4–)5–5.5(–7) μm; hila thickened, darkened, refractive, 2–4 μm diam.

Cultural characteristics — Colonies on MEA reaching 24 mm diam after 20 d at 25 °C; smooth to folded, erumpent with even margins and moderate aerial mycelium; surface smoke-grey in centre, olivaceous-grey in outer region; reverse olivaceous-grey.

Specimens examined. IRAN, Zanjan Province, Tarom on leaves of Chenopodium sp. (Chenopodiaceae), 26 Sept. 2011, M. Bakhshi (holotype IRAN 16467 F, culture ex-type CCTU 1038 = CBS 136022); West Azerbaijan Province, Khoy, on Chenopodium sp. (Chenopodiaceae), 20 Sept. 2011, M. Arzanlou, CCTU 1045; Khoy, on leaves of C. album (Chenopodiaceae), 1 Sept. 2012, M. Arzanlou, CCTU 1176.

Notes — Groenewald et al. (2013) regarded this species as a cryptic taxon, C. cf. chenopodii, since they did not have sufficient isolates of C. chenopodii for comparison. In the present study, we have included additional collections of both species. Based on robust phylogenetic differences, C. pseudochenopodii must be regarded as a distinct species. There are slight differences in morphology and symptoms between C. chenopodii and C. pseudochenopodii, i.e., leaf spots with concentric rings without definite margins; conidia slightly longer and narrower (Fig. 7), which refer only to the collections examined. Cercospora chenopodii is widespread and represented by numerous collections. The two species are, however, indistinguishable, and can only be differentiated by DNA sequence analyses. Cercospora pseudochenopodii has distinct ACT and HIS phylogenies, but based on CAL sequence data, it cannot be differentiated from C. chenopodii. In the ITS and TEF1-α phylogeny, C. pseudochenopodii is intermixed with some other species, but it is distinct from C. chenopodii. In the combined tree (Fig. 1, part 2), it sits in a well-supported clade sister to C. chenopodii.

Cercospora solani Thüm., Hedwigia 19: 135. 1880 and Contr. Fl. Mycol. Lusat. II: 15. 1880 — Fig. 8

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Cercospora solani (CBS 136038). a. Leaf spots; b. c. fasciculate conidiophores; d–h. conidia. — Scale bars = 10 μm.

Description in planta — Leaf spots amphigenous, subcircular to irregular, 8–27 mm diam, with grey to black dots (stroma with conidiophores) and dark grey margins. Mycelium internal. Caespituli amphigenous, brown. Conidiophores aggregated in moderately dense fascicles (6–20), arising from a well-developed, intraepidermal and substomatal, brown stromata, 10–55 μm diam; conidiophores pale brown to brown, 2–6-septate, straight to geniculate-sinuous due to sympodial proliferation, simple, rarely branched, almost uniform in width, often constricted at the proliferating point, (45–)64–75(–100) × 4–5 μm. Conidiogenous cells intercalary and terminal, pale brown to brown, tapering to flat-tipped apical loci, proliferating sympodially, 20–35 × 4–5 μm, multi-local; loci distinctly thickened, darkened and somewhat refractive, apical or formed on shoulders caused by geniculation, 2–3.5 μm diam. Conidia solitary, subcylindrical or somewhat narrowed towards the tip, straight to slightly curved, hyaline, thin-walled, (26–)48–59(–92) × (3.5–)4.5–5.5 μm, distinctly (2–)3–7(–8)-septate, with subobtusely rounded apices and truncate bases; hila distinctly thickened, darkened, refractive, 1.5–2.5 μm diam.

Cultural characteristics — Colonies on MEA slow growing, reaching 15 mm diam after 20 d at 25 °C in the dark; erumpent with smooth, even margins and sparse aerial mycelium; grey-olivaceous on the surface, reverse iron-grey.

Specimens examined. IRAN, West Azerbaijan Province, Khoy, on leaves of Solanum nigrum (Solanaceae), Sept. 2011, M. Arzanlou, CCTU 1043 = CBS 136038; Khoy, on leaves of S. nigrum (Solanaceae), Sept. 2011, M. Arzanlou, CCTU 1050.

Notes — Cercospora solani is supported in all of the individual gene trees. In the combined tree, it is a sister taxon to the clade including C. conyzae-canadensis, C. cf. modiolae and Cercospora sp. E sensu Groenewald et al. (2013) (Fig. 1, part 1). Ten species of Cercospora have been reported from Solanum, including C. apii, C. canescens, C. lanugiflori, C. physalidis, C. puyana, C. sciadophila, C. solanacea, C. solani, C. solanigena and C. solani-nigri. Cercospora solani is phylogenetically distinct from C. apii, C. canescens and C. physalidis. Among the other candidate species, the status of C. lanugiflorii, C. sciadophila and C. solanigena are uncertain, as their type collections are lacking (Crous & Braun 2003); symptoms of C. puyana are different, and C. solanacea has been reduced to synonymy with Pseudocercospora trichophila var. punctata (Braun & Urtiaga 2013). Cercospora solani-nigri is also a Pseudocercospora and heterotypic synonym of P. atromarginalis (type material examined by U. Braun: on Solanum nigrum, India, Poona, 18 Dec. 1957, P.P. Chiddarwar, BPI 441404). The description of C. solani in Chupp (1954) is misleading. It is unclear on which collections Chupp‘s (1954) description was based. The name C. solani has often been confusingly applied. However, type material of C. solani has been examined by U. Braun (on Solanum nigrum, Portugal, Coimbra, Jan. 1879, F. Moller, Thüm., Mycoth. Univ. 2070, HAL) and was shown to be a true Cercospora s.str. characterised by cylindrical to subacicular (somewhat apically attenuated) conidia. The type of C. solani agrees well with the present material from Iran.

Cercospora sorghicola M. Bakhshi, Arzanlou, Babai-ahari, Crous & U. Braun, sp. nov. — MycoBank MB809121; Fig. 9

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Cercospora sorghicola (CBS 136448). a. Leaf spots; b. c. fasciculate conidiophores; d–h. conidia. — Scale bars = 10 μm.

Etymology. Derived from the host genus, Sorghum.

Description in planta — Leaf spots amphigenous, initially dark purple spots that enlarge over time into linear-oblong lesions with dark purple centre and dark red-purple margins, 5–35 mm long. Mycelium internal. Caespituli amphigenous, brown.

Conidiophores aggregated in loose or dense fascicles (5–40), arising from the upper cells of a well-developed, intraepidermal and substomatal, brown stroma, up to 50 μm diam; conidiophores pale brown to brown, paler towards the apex, simple, unbranched, 1–8-septate, straight or flexuous caused by sympodial proliferation, almost uniform in width, sometimes conical at the apex, (45–)70–80(–100) × 4–5.5 μm. Conidiogenous cells terminal or intercalary, unbranched, pale brown, smooth, proliferating sympodially, 20–40 × 3.5–5.5 μm, multi-local; loci thickened, darkened, refractive, protuberant, apical, lateral, 2–4 μm diam. Conidia solitary, smooth, acicular, cylindro-obclavate to obclavate, straight or curved, successively tapering towards the apex, hyaline, (3–)8–13(–17)-septate, apex subacute to subobtuse, base truncate to obconically truncate, (21–)80–100 (–150) × 3–4(–5) μm; hila distinctly thickened, darkened, refractive, 1.5–2.5 μm diam.

Cultural characteristics — Colonies on MEA reaching 45 mm diam after 20 d at 25 °C in the dark; flat with smooth, even margins and moderate aerial mycelium; surface olivaceous-green, reverse dark olivaceous-green.

Specimens examined. IRAN, Guilan Province, Kiashahr, on Sorghum halepense (Poaceae), Aug. 2012, M. Bakhshi (holotype IRAN 16457 F, culture ex-type CCTU 1173 = CBS 136448); Kiashahr, on S. halepense (Poaceae), Aug. 2012, M. Bakhshi, CCTU 1173.2.

Notes — In the individual gene trees (TEF1-α, ACT, CAL and HIS phylogeny), C. sorghicola always resides in a well-supported clade including C. sorghicola and Cercospora sp. A sensu Groenewald et al. (2013). In the combined tree (Fig. 1, part 1), it forms a distinct clade from Cercospora sp. A and these two species are sister taxa. The variation between these two species is based on one nucleotide change in ITS (one insertion in Cercospora sp. A), three nucleotides in TEF1-α (three transitions), two nucleotides in CAL (two transversions), two nucleotides in ACT (one transition and one transversion) and four nucleotide changes in HIS (one transversion and three transitions).

Because sequences for the TEF1-α, ACT, CAL and HIS loci were not available in NCBI for C. sorghi, which has been reported from Sorghum spp., a separate tree that included C. sorghicola, Cercospora sp. A, C. sorghi (GenBank AF291707) and other closely related species was generated using only ITS sequences. In this tree C. sorghicola and C. sorghi reside in different lineages (Fig. 10). Two nucleotide changes at ITS (one transition and one insertion) explain the different position of the isolates used in the current study and C. sorghi. Cercospora sorghicola is also morphologically different from C. sorghi by its longer, wider and multi-septate conidia.

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Consensus phylogram (50 % majority rule) of 346 trees resulting from a Bayesian analysis of the ITS sequence alignment using MrBayes v. 3.2.1. The tree was rooted to Ramularia endophylla (strain CBS 113265).

Cercospora sp. TFig. 11

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Cercospora sp. T (CBS 136125). a. b. Leaf spots; c. intraepidermal caespituli; d. substomatal caespituli; e. fasciculate conidiophores; f–h. conidia. — Scale bars = 10 μm.

Description in planta — Leaf spots amphigenous, subcircular to irregular, 5–12 mm diam, grey-brown with indefinite margins. Mycelium internal. Caespituli amphigenous, brown. Conidiophores aggregated in loose fascicles (2–8), arising from a weakly developed, intraepidermal and substomatal, dark brown stroma, up to 25 μm diam; conidiophores brown to dark brown, 5–14-septate, straight to geniculate-sinuous due to sympodial proliferation, simple, unbranched, thick-walled, uniform in width, (95–)152–175(–215) × 3.5–5 μm. Conidiogenous cells intercalary and terminal, proliferating sympodially, multi-local; loci thickened, darkened, protuberant, apical or formed on shoulders caused by geniculation, 1.5–3 μm diam. Conidia solitary, hyaline, filiform to acicular, straight to slightly curved, with truncate base and acute to subobtuse apices, (72–)93–115(–180) × (2–)3–4 μm, (7–)10–14(–20)-septate.

Cultural characteristics — Colonies on MEA reaching 65 mm diam after 20 d at 25 °C in the dark; smooth, flat, with even margins and moderate aerial mycelium; surface smoke-grey; reverse iron-grey.

Specimens examined. IRAN, Guilan Province, Rasht, on leaves of Coreopsis sp. (Asteraceae), June 2012, M. Bakhshi, CCTU 1148 = CBS 136125; Rasht, on leaves of Coreopsis sp. (Asteraceae), June 2012, M. Bakhshi, CCTU 1148.2.

Notes — For phylogeny, see the notes under C. iranica. Two species of Cercospora, including C. bidentis and C. coreopsidis, have been reported from Coreopsis spp. Cercospora sp. T is morphologically distinct from C. bidentis by lacking or having small stroma, loose fascicles and dark brown conidiophores. According to its independent phylogenetic position (Fig. 1, part 1), Cercospora sp. T probably represents a host-specific species. Furthermore, Cercospora sp. T and C. cf. coreopsidis (tentative name for an examined and sequenced Korean sample of C. coreopsidis sensu Shin & Kim 2001, see Groenewald et al. 2013), which are both host-specific to Coreopsis spp., are phylogenetically distinct. We presently do not have phylogenetic data from North American material on Coreopsis, which would fix the application of the name C. coreopsidis. The relationship between Cercospora sp. T on Coreopsis from Iran and C. cf. coreopsidis on Coreopsis from Korea needs resolution.

DISCUSSION

This study provides a broad framework for the genus Cercospora in Iran. These fungi are very common and widespread in different climates and regions of this country. Until now, 33 species of Cercospora s.str. have been recorded from Iran (Bakhshi et al. 2012a, Hesami et al. 2012, Pirnia et al. 2012). The identification of these taxa has mostly relied on host association and morphological characteristics sensu Chupp (1954). Unfortunately, there are few living cultures available for molecular study. In the present paper, multilocus sequence typing (MLST) was employed for the first time to discriminate among Iranian Cercospora species, which are described according to their DNA phylogeny, ecology, morphological and cultural characteristics, by employing the Consolidated Species Concept as outlined by Quaedvlieg et al. (2014).

Phylogenetic performance of the five loci (ITS, TEF1-α, ACT, CAL and HIS) employed for phylogenetic inference in this study was previously reported by Groenewald et al. (2010, 2013). Our study indicated that the ITS region has limited resolution when used for species comparison in Cercospora, especially with regard to C. apii s.lat. (Goodwin et al. 2001, Pretorius et al. 2003, Groenewald et al. 2010, 2013). The other loci screened in this study had different levels of success in resolving species boundaries. The TEF1-α region was able to distinguish only 35 % of 20 lineages, whereas the actin region had 45 % clade recovery. Although the CAL region only distinguished 40 % of the species, it remains essential to distinguish several species: C. apii from C. beticola, C. cf. flagellaris from C. convolvulicola, and C. iranica from Cercospora sp. T. The HIS region was slightly more effective and discriminated half of the detected species. These data show the importance of all five loci in combined analysis for Cercospora taxonomy and are congruent with previous studies of Groenewald et al. (2010, 2013). Despite this, the sequences of these five loci are still too conserved in Cercospora, and there is still need to find the best barcoding locus (loci) for Cercospora.

In the present study 20 species of Cercospora were identified from northern Iran based on a combination of sequence data, host-fungus relation and morphological characters. Results obtained in this study show that 60 isolates of Cercospora obtained from 18 host families in different groups of plants viz. agricultural crops, ornamentals, forest trees and weeds grouped within the C. cf. flagellaris species complex. This complex was previously treated by Groenewald et al. (2013) from nine host families (in total encompassing 23 host families). Cercospora cf. flagellaris is morphologically similar to C. flagellaris (= C. apii s.lat.), but names could not be applied with confidence, and isolates from the original host and country (Phytolaca decandra, USA) need to be included to confirm the true identity of this species. We suspect that this species could split into several species once more DNA loci are screened and pathogenicity tests are conducted.

In recent years several groups have attempted to study Cercospora spp. from Iran based solely on morphological characters and host range (Hesami et al. 2012). According to our data, most of these records are unreliable or incorrect, and probably reside in the C. cf. flagelaris clade (Hesami et al. 2012, Pirnia et al. 2012). On the other hand, many earlier records were identified as C. apii, which according to results of our study, has a much narrower host range than generally recognised.

Although the isolates investigated during this study represent the largest collection of Cercospora species so far subjected to DNA sequence analysis from Iran, there are still some issues that need to be resolved. The identity of two groups of species remains questionable. Names based on American or European type specimens should not be assumed for the identification of identical diseases on the same hosts in Asia, Africa or South America and vice versa (Crous et al. 2013, Groenewald et al. 2013). This was the case for the first group of the species with questionable identity in our study, which were indicated with ‘cf.’ in the species name, e.g. C. cf. richardiicola, C. cf. flagellaris and C. cf. zinniae. In the case of the second species group, the clade contains isolates from multiple hosts, e.g. in Cercospora sp. G, isolates from six host families (Amaranthaceae, Asteraceae, Cucurbitaceae, Malvaceae, Plantaginaceae, Poaceae) were found. To resolve these taxonomic problems, additional species described by Chupp (1954) and Crous & Braun (2003), which are not currently known from their DNA must be epitypified, thus allowing DNA sequence-based analyses to stabilize the names used in different phylogenetic lineages. Furthermore, in future studies of Cercospora, additional loci must be included in the analyses to obtain better resolution of the species.

The data presented here confirm that some Cercospora species are host-specific, e.g. C. chenopodii and C. pseudochenopodii on Chenopodium spp., C. violae on Viola spp., C. cf. zinniae on Zinnia elegans, C. conyzae-canadensis on Conyza canadensis, C. convolvulicola on Convolvulus arvensis, C. solani on Solanum nigrum and C. sorghicola on Sorghum halepense; some species are restricted to one host family e.g. C. althaeina on Malvaceae, C. cylindracea on Asteraceae; whereas others have wide host ranges, e.g. C. apii, C. armoraciae, C. beticola, C. cf. flagellaris and Cercospora sp. G. However, it is not acceptable to recognise the host range of a species without confirmatory pathogenicity tests. For example, it still remains to be seen whether isolates from different hosts with similar morphology to C. cf. flagellaris, have the ability to cross-infect hosts (Table 2).

Table 2

Host-fungus index for the Iranian Cercospora spp. examined in this study.

Host FamilyHost speciesSpecies
AcerceaeAcer velutinumC. cf. flagellaris
AmaranthaceaeAmaranthus blitoidesC. cf. flagellaris
Amaranthus retroflexusCercospora sp. G
C. cf. flagellaris
Amaranthus spp.Cercospora sp. G
C. cf. flagellaris
Celosia cristataCercospora sp. G
ApocynaceaeCynanchum acutumC. apii
AraceaeAnubias sp.C. cf. flagellaris
AsteraceaeBidens tripartitaC. cf. richardiicola
Cercospora sp. G
Calendula officinalisC. cf. flagellaris
Cichorium intybusCercospora sp. G
C. cylindracea
Conyza canadensisC. conyzae-canadensis
Coreopsis sp.Cercospora sp. T
Eclipta prostrataC. cf. flagellaris
Lactuca serriolaC. cylindracea
Leucanthemum superbumC. cf. flagellaris
Silybum marianumC. cf. flagellaris
Sonchus asperC. beticola
Sonchus sp.C. beticola
Tagetes patulaC. cf. flagellaris
Tanacetum balsamitaC. armoraciae
Xanthium spinosumC. cf. flagellaris
Xanthium strumariumC. cf. flagellaris
Zinnia elegansC. cf. zinniae
BalsaminaceaeImpatiens balsaminaC. cf. flagellaris
BoraginaceaeHeliotropium europaeumC. apii
BrassicaceaeCardaria drabaC. armoraciae
Lepidium sativumC. cf. flagellaris
Raphanus sativusC. cf. flagellaris
BuxaceaeBuxus microphyllaC. cf. flagellaris
CaesalpinaceaeCercis siliquastrumC. cf. flagellaris
CapparidaceaeCapparis spinosaC. armoraciae
ChenopodiaceaeBeta vulgarisC. beticola
Chenopodium albumC. chenopodii
C. pseudochenopodii
Chenopodium spp.C. beticola
C. pseudochenopodii
ConvolvulaceaeConvolvulus arvensisC. convolvulicola
CucurbitaceaeCucurbita maximaC. cf. flagellaris
Cercospora sp. G
Cucurbita pepoC. cf. flagellaris
Cucurbita sp.C. cf. flagellaris
Citrullus lanatusC. cf. flagellaris
Ecballium elateriumC. apii
C. cf. flagellaris
FabaceaeArachis hypogaeaC. cf. flagellaris
Alhagi camelorumC. zebrina
Coronilla variaC. armoraciae
Glycine maxC. cf. flagellaris
Medicago sativaC. zebrina
Medicago sp.C. zebrina
Phaseolus vulgarisC. cf. flagellaris
trifolium repensC. zebrina
Vicia fabaC. cf. flagellaris
C. iranica
Vicia sp.C. zebrina
GeraniaceaePelargonium hortorumC. cf. flagellaris
HydrangeaceaeHydrangea sp.C. cf. flagellaris
C. iranica
MalvaceaeAbutilon theophrastiC. cf. flagellaris
Cercospora sp. G
Althaea roseaC. althaeina
Gossypium herbaceumC. cf. flagellaris
Hibiscus trionumC. cf. flagellaris
Malva sylvestrisC. althaeina
C. beticola
Malva neglectaC. beticola
OleaceaeOlea europaeaC. cf. flagellaris
PedaliaceaeSesamum indicumC. beticola
PlantaginaceaePlantago lanceolataC. apii
C. beticola
Plantago majorCercospora sp. G
PoaceaeSorghum halepenseCercospora sp. G
C. sorghicola
PolygonaceaeRumex crispusC. beticola
C. rumicis
SalicaceaePopulus deltoidesC. cf. flagellaris
SolanaceaeDatura stramoniumC. cf. flagellaris
Solanum nigrumC. solani
UrticaceaeUrtica dioicaC. cf. flagellaris
C. rumicis
ViolaceaeViola sp.C. violae
VitaceaeVitis viniferaC. zebrina

The present study was initiated to resolve the taxonomy of the genus Cercospora in Iran by employing the Consolidated Species Concept. Our results indicate a rich diversity of this genus in the north and north-west of Iran. Future studies will be directed towards resolving the taxonomy of the genus Cercospora in other parts of Iran, and also the taxonomy of other cercospora-like pathogens of agricultural crops of major economic importance.

Acknowledgments

The Research Deputy of the University of Tabriz, the Studienstiftung für mykologische Systematik und Ökologie and the CBSKNAW Fungal Biodiversity Centre are thanked for financial support. The first author also wishes to thank the Agricultural and Natural Resources Research Center of Zanjan Province (especially Dr. Hosein Jafari) as well as the Agricultural Research and Natural Resources Center of Ardabil Province, Moghan (especially Yousef Jahani, Masoud Taghizadeh, Vahid Mahdavi and Hosein Karbalaee) for their kind assistance in sampling.

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