Skip to main content
Log in

Pseudostanjehughesia aquitropica gen. et sp. nov. and Sporidesmium sensu lato species from freshwater habitats

  • Original Article
  • Published:
Mycological Progress Aims and scope Submit manuscript

Abstract

Phylogenetic analyses of multi-gene (LSU, SSU, TEF1α, RPB2 and ITS) sequence data support the placement of several Sporidesmium-like species within Sordariomycetes. The taxa collected in the present study were from unidentified submerged twigs in a stream in Prachuap Khiri Khan and Phang Nga Provinces, Thailand and Guizhou Province, China. Morphological examination and phylogenetic analyses provide evidence for several taxonomic novelties, including a new genus (Pseudostanjehughesia) and five novel species (Distoseptispora guttulata, D. phangngaensis, D. suoluoensis, Pseudostanjehughesia aquitropica and Sporidesmium gyrinomorphum). The collections also comprised three previously described species (Distoseptispora multiseptata, Sporidesmium thailandense and S. tropicale). Descriptions and illustrations of the above taxa are provided and their systematic placement is discussed. The description of Distoseptispora is emended.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9

Similar content being viewed by others

References

  • Abdel-Wahab MA, Pang KL, Nagahama T, Abdel-Aziz FA, Jones EBG (2010) Phylogenetic evaluation of anamorphic species of Cirrenalia and Cumulospora with the description of eight new genera and four new species. Mycol Prog 9:537–558. https://doi.org/10.1007/s11557-010-0661-x

    Article  Google Scholar 

  • Alvarez LV, Groenewald JZ, Crous PW (2016) Revising the Schizoparmaceae: Coniella and its synonyms Pilidiella and Schizoparme. Stud Mycol 85:1–34. https://doi.org/10.1016/j.simyco.2016.09.001

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ariyawansa HA, Hawksworth DL, Hyde KD, Jones EBG, Maharachchikumbura SSN, Manamgoda DS, Thambugala KM, Udayanga D, Camporesi E, Daranagama A, Jayawardena R, Liu JK, McKenzie EHC, Phookamsak R, Senanayake IC, Shivas RG, Tian Q, Xu JC (2014) Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Divers 69(1):57–91. https://doi.org/10.1007/s13225-014-0315-4

    Article  Google Scholar 

  • Ariyawansa HA, Hyde KD, Jayasiri SC, Buyck B, Chethana KWT, Dai DQ, Dai YC, Daranagama DA, Jayawardena RS, Lücking R, Ghobad-Nejhad M, Niskanen T, Thambugala KM, Voigt K, Zhao RL, Li GJ, Doilom M, Boonmee S, Yang ZL, Cai Q, Cui YY, Bahkali AH, Chen J, Cui BK, Chen JJ, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, Hashimoto A, Hongsanan S, Jones EBG, Larsson E, Li WJ, Li QR, Liu JK, Luo ZL, Maharachchikumbura SSN, Mapook A, McKenzie EHC, Norphanphoun C, Konta S, Pang KL, Perera RH, Phookamsak R, Phukhamsakda C, Pinruan U, Randrianjohany E, Singtripop C, Tanaka K, Tian CM, Tibpromma S, Abdel-Wahab MA, Wanasinghe DN, Wijayawardene NN, Zhang JF, Zhang H, AbdelAziz FA, Wedin M, Westberg M, Ammirati JF, Bulgakov TS, Lima DX, Callaghan TM, Callac P, Chang CH, Coca LF, Dal-Forno M, Dollhofer V, Fliegerová K, Greiner K, Griffith GW, Ho HM, Hofstetter V, Jeewon R, Kang JC, Wen TC, Kirk PM, Kytövuori I, Lawrey JD, Xing J, Li H, Liu ZY, Liu XZ, Liimatainen K, Lumbsch HT, Matsumura M, Moncada B, Nuankaew S, Parnmen S, Santiago ALCMA, Sommai S, Song Y, Souza CAF, Souza-Motta CM, Su HY, Suetrong S, Wang Y, Wei SF, Yuan HS, Zhou LW, Réblová M, Fournier J, Camporesi E, Luangsa-ard JJ, Tasanathai K, Khonsanit A, Thanakitpipattana D, Somrithipol S, Diederich P, Millanes AM, Common RS, Stadler M, Yan JY, Li XH, Lee HW, Nguyen TTT, Lee HB, Battistin E, Marsico O, Vizzini A, Vila J, Ercole E, Eberhardt U, Simonini G, Wen HA, Chen XH (2015) Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 75(1):27–274. https://doi.org/10.1007/s13225-015-0346-5

    Article  Google Scholar 

  • Arzanlou M, Groenewald JZ, Gams W, Braun U, Shin HD, Crous PW (2007) Phylogenetic and morphotaxonomic revision of Ramichloridium and allied genera. Stud Mycol 58:57–93. https://doi.org/10.3114/sim.2007.58.03

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cai L, Tsui CKM, Zhang K, Hyde KD (2002) Aquatic fungi from Lake Fuxian, Yunnan, China. Fungal Divers 9:57–70

    Google Scholar 

  • Cai L, Zhang K, McKenzie EHC, Hyde KD (2003) Freshwater fungi from bamboo and wood submerged in the Liput River in the Philippines. Fungal Divers 13:1–12

    Google Scholar 

  • Cai L, Jeewon R, Hyde KD (2006) Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology. Mycol Res 110(2):137–150. https://doi.org/10.1016/j.mycres.2005.09.014

    Article  CAS  PubMed  Google Scholar 

  • Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN (2002) A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94(6):1017–1031. https://doi.org/10.1080/15572536.2003.11833157

    Article  CAS  PubMed  Google Scholar 

  • Checa J, Blanco MN, Moreno G, Alvarado P, Esquivel E (2014) Amplistroma erinaceum, a new species and its anamorph from Panama. Mycol Prog 13:277–283. https://doi.org/10.1007/s11557-013-0912-8

    Article  Google Scholar 

  • Cheewangkoon R, Groenewald JZ, Verkley GJM, Hyde KD, Wingfield MJ, Gryzenhout M, Summerell BA, Denman S, Toanun C, Crous PW (2010) Re-evaluation of Cryptosporiopsis eucalypti and Cryptosporiopsis-like species occurring on Eucalyptus leaves. Fungal Divers 44:89–105. https://doi.org/10.1007/s13225-010-0041-5

    Article  Google Scholar 

  • Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu J, Liu X, Stadler M, Hyde KD (2014) The sooty moulds. Fungal Divers 66:1–36. https://doi.org/10.1007/s13225-014-0278-5

    Article  Google Scholar 

  • Crous PW, Groenewald JZ, Wood AR (2008) Sporidesmium knawiae. Fungal Planet 29

  • Crous PW, Summerell BA, Shivas RG, Romberg M, Mel'nik VA, Verkley GJ, Groenewald JZ (2011) Fungal Planet description sheets: 92-106. Persoonia 27:130–162. https://doi.org/10.3767/003158511X617561

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Summerell BA, Shivas RG, Carnegie AJ, Groenewald JZ (2012a) A re-appraisal of Harknessia (Diaporthales), and the introduction of Harknessiaceae fam. nov. Persoonia 28:49–65. https://doi.org/10.3767/003158512X639791

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Summerell BA, Shivas RG, Burgess TI, Decock CA, Dreyer LL, Granke LL, Guest DI, Hardy GE, Hausbeck MK, Hüberli D, Jung T, Koukol O, Lennox CL, Liew EC, Lombard L, McTaggart AR, Pryke JS, Roets F, Saude C, Shuttleworth LA, Stukely MJ, Vánky K, Webster BJ, Windstam ST, Groenewald JZ (2012b) Fungal Planet description sheets: 107-127. Persoonia 28:138–182. https://doi.org/10.3767/003158512X652633

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Groenewald JZ, Lombard L, Wingfield MJ (2012c) Homortomyces gen. nov., a new dothidealean pycnidial fungus from the Cradle of Humankind. IMA Fungus 3(2):109–115. https://doi.org/10.5598/imafungus.2012.03.02.02

    Article  PubMed  PubMed Central  Google Scholar 

  • Cruywagen EM, de Beer ZW, Roux J, Wingfield MJ (2010) Three new Graphium species from baobab trees in South Africa and Madagascar. Persoonia 25:61–71. https://doi.org/10.3767/003158510X550368

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Damm U, Crous PW, Fourie PH (2008) A fissitunicate ascus mechanism in the Calosphaeriaceae, and novel species of Jattaea and Calosphaeria on Prunus wood. Persoonia 20:39–52. https://doi.org/10.3767/003158508X313940

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • De Beer ZW, Duong TA, Barnes I, Wingfield BD, Wingfield MJ (2014) Redefining Ceratocystis and allied genera. Stud Mycol 79:187–219. https://doi.org/10.1016/j.simyco.2014.10.001

    Article  PubMed  PubMed Central  Google Scholar 

  • De Silva H, Castlebury LA, Green S, Stone JK (2009) Characterisation and phylogenetic relationships of Anisogramma virgultorum and A. anomala in the Diaporthales (Ascomycota). Mycol Res 113:73–81. https://doi.org/10.1016/j.mycres.2008.08.008

    Article  PubMed  CAS  Google Scholar 

  • Ellis MB (1958) Clasterosporium and some allied Dematiaceae-Phragmosporae: I. Mycol Pap 7:1–89

    Google Scholar 

  • Ellis MB (1971) Dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew

    Google Scholar 

  • Ellis MB (1976) More dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew

    Google Scholar 

  • Farr DF, Castlebury LA, Rossman AY, Erincik O (2001) Greeneria uvicola, cause of bitter rot of grapes, belongs in the Diaporthales. Sydowia 53:185–199

    Google Scholar 

  • Ferrer A, Miller AN, Sarmiento C, Shearer CA (2012) Three new genera representing novel lineages of Sordariomycetidae (Sordariomycetes, Ascomycota) from tropical freshwater habitats in Costa Rica. Mycologia 104(4):865–879. https://doi.org/10.3852/11-111

    Article  PubMed  Google Scholar 

  • Fu CH, Hsieh HM, Chen CY, Chang TT, Huang YM, Ju YM (2013) Ophiodiaporthe cyatheae gen. et sp. nov., a diaporthalean pathogen causing a devastating wilt disease of Cyathea lepifera in Taiwan. Mycologia 105(4):861–872. https://doi.org/10.3852/12-346

    Article  PubMed  Google Scholar 

  • Hernández-Gutiérrez A, Sutton BC (1997) Imimyces and Linkosia, two new genera segregated from Sporidesmium sensu lato, and redescription of Polydesmus. Mycol Res 101(2):201–209. https://doi.org/10.1017/s0953756296002419

    Article  Google Scholar 

  • Hernández-Restrepo M, Gené J, Mena-Portales J, Cano J, Madrid H, Castañeda-Ruiz RF, Guarro J (2014) New species of Cordana and epitypification of the genus. Mycologia 106(4):723–734. https://doi.org/10.3852/13-122

    Article  PubMed  Google Scholar 

  • Ho WH, Hyde KD, Hodgkiss IJ, Yanna (2001) Fungal communities on submerged wood from streams in Brunei, Hong Kong, and Malaysia. Mycol Res 105(12):1492–1501. https://doi.org/10.1017/s095375620100507x

    Article  Google Scholar 

  • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17(8):754–755. https://doi.org/10.1093/bioinformatics/17.8.754

    Article  CAS  PubMed  Google Scholar 

  • Huhndorf SM, Fernández FA (2005) Teleomorph-anamorph connections: Chaetosphaeria raciborskii and related species, and their Craspedodidymum-like anamorphs. Fungal Divers 19:23–49

    Google Scholar 

  • Huhndorf SM, Miller AN (2008) A new species of Camarops and phylogenetic analysis of related taxa in the Boliniaceae. North American Fungi 3:231–239. https://doi.org/10.2509/naf2008.003.00715

    Article  Google Scholar 

  • Huhndorf SM, Fernández FA, Taylor JE, Hyde KD (2001) Two Pantropical Ascomycetes: Chaetosphaeria cylindrospora sp. nov. and Rimaconus, a New Genus for Lasiosphaeria jamaicensis. Mycologia 93(6):1072–1080. https://doi.org/10.2307/3761669

    Article  CAS  Google Scholar 

  • Huhndorf SM, Miller AN, Fernández FA (2004) Molecular Systematics of the Sordariales: The Order and the Family Lasiosphaeriaceae Redefined. Mycologia 96(2):368–387. https://doi.org/10.2307/3762068

    Article  CAS  PubMed  Google Scholar 

  • Huhndorf SM, Greif M, Mugambi GK, Miller AN (2008) Two new genera in the Magnaporthaceae, a new addition to Ceratosphaeria and two new species of Lentomitella. Mycologia 100:940–955. https://doi.org/10.3852/08-037

    Article  PubMed  Google Scholar 

  • Huhndorf SM, Miller AN, Greif M, Samuels GJ (2009) Amplistroma gen. nov. and its relation to Wallrothiella, two genera with globose ascospores and acrodontium-like anamorphs. Mycologia 101(6):904–919. https://doi.org/10.3852/08-213

    Article  PubMed  Google Scholar 

  • Hyde KD, Goh TK (1998) Fungi on submerged wood in Lake Barrine, north Queensland, Australia. Mycol Res 102(6):739–749. https://doi.org/10.1017/s0953756297005868

    Article  Google Scholar 

  • Hyde KD, Hongsanan S, Jeewon R, Bhat DJ, McKenzie EHC, Jones EBG, Phookamsak R, Ariyawansa HA, Boonmee S, Zhao Q, Abdel-Aziz FA, Abdel-Wahab MA, Banmai S, Chomnunti P, Cui BK, Daranagama DA, Das K, Dayarathne MC, de Silva NI, Dissanayake AJ, Doilom M, Ekanayaka AH, Gibertoni TB, Go’esNeto A, Huang SK, Jayasiri SC, Jayawardena RS, Konta S, Lee HB, Li WJ, Lin CG, Liu JK, Lu YZ, Luo ZL, Manawasinghe IS, Manimohan P, Mapook A, Niskanen T, Norphanphoun C, Papizadeh M, Perera RH, Phukhamsakda C, Richter C, de Santiago ALCMA, Drechsler-Santos ER, Senanayake IC, Tanaka K, TMDS T, Thambugala KM, Tian Q, Tibpromma S, Thongbai B, Vizzini A, Wanasinghe DN, Wijayawardene NN, Wu HX, Yang J, Zeng XY, Zhang H, Zhang JF, Bulgakov TS, Camporesi E, Bahkali AH, Amoozegar MA, Araujo-Neta LS, Ammirati JF, Baghela A, Bhatt RP, Bojantchev D, Buyck B, da Silva GA, de Lima CLF, de Oliveira RJV, de Souza CAF, Dai YC, Dima B, Duong TT, Ercole E, MafaldaFreire F, Ghosh F, Hashimoto A, Kamolhan S, Kang JC, Karunarathna SC, Kirk PM, Kytövuori I, Lantieri A, Liimatainen K, Liu ZY, Liu XZ, Lücking R, Medardi G, Mortimer PE, TTT N, Promputtha I, KNA R, Reck MA, Lumyong S, Shahzadeh-Fazeli SA, Stadler M, Soudi MR, Su HY, Takahashi T, Tangthirasunun N, Uniyal P, Wang Y, Wen TC, Xu JC, Zhang ZK, Zhao YC, Zhou JL, Zhu L (2016a) Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 80(1):1–270. https://doi.org/10.1007/s13225-016-0373-x

    Article  Google Scholar 

  • Hyde KD, Fryar S, Tian Q, Bahkali AH, Xu JC (2016b) Lignicolous freshwater fungialong a north–south latitudinal gradient in the Asian/Australian region; can we predict the impact of global warming on biodiversity and function? Fungal Ecol 19:190–200. https://doi.org/10.1016/j.funeco.2015.07.002

    Article  Google Scholar 

  • Iturriaga T, Hawksworth DL, Crane JL (2008) ‘Sporidesmiumlichenicola sp. nov., a new lichenicolous fungus on Leptogium from Venezuela. Mycologia 100(3):392–396. https://doi.org/10.3852/06-166r

    Article  PubMed  Google Scholar 

  • Index Fungorum (2017) available from: http://www.indexfungorum.org/. Accessed May 2017

  • Jacobs K, Kirisits T, Wingfield MJ (2003) Taxonomic re-evaluation of three related species of Graphium, based on morphology, ecology and phylogeny. Mycologia 95(4):714–727

    Article  PubMed  Google Scholar 

  • James TY, Kauff F, Schoch C, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch T, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung GH, Johnson D, O’Rourke B, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schüßler A, Longcore JE, O’Donnell K, MozleyStandridge K, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lücking R, Büdel B, Geiser DM, Aptroot A, Buck WR, Cole MS, Diederich P, Printzen C, Schmitt I, Schultz M, Yahr R, Zavarzin A, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R (2006) Reconstructing the early evolution of the fungi using a six-gene phylogeny. Nature 443:818–822. https://doi.org/10.1038/nature05110

    Article  CAS  PubMed  Google Scholar 

  • Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat DJ, Buyck B, Cai L, Dai YC, Abd-Elsalam KA, Ertz D, Hidayat I, Jeewon R, Jones EBG, Bahkali AH, Karunarathna SC, Liu JK, Luangsa-ard JJ, Lumbsch HT, Maharachchikumbura SSN, McKenzie EHC, Moncalvo JM, Ghobad-Nejhad M, Nilsson H, Pang KL, Pereira OL, Phillips AJL, Raspé O, Rollins AW, Romero AI, Etayo J, Selçuk F, Stephenson SL, Suetrong S, Taylor JE, Tsui CKM, Vizzini A, Abdel-Wahab MA, Wen TC, Boonmee S, Dai DQ, Daranagama DA, Dissanayake AJ, Ekanayaka AH, Fryar SC, Hongsanan S, Jayawardena RS, Li WJ, Perera RH, Phookamsak R, Silva NI, Thambugala KM, Tian Q, Wijayawardene NN, Zhao RL, Zhao Q, Kang JC, Promputtha I (2015) The faces of fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Divers 74(1):3–18. https://doi.org/10.1007/s13225-015-0351-8

    Article  Google Scholar 

  • Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: recommendations to resolve taxonomic ambiguities. Mycosphere 7:1669–1677. https://doi.org/10.5943/mycosphere/7/11/4

    Article  Google Scholar 

  • Jeewon R, Liew EC, Hyde KD (2002) Phylogenetic relationships of Pestalotiopsis and allied genera inferred from ribosomal DNA sequences and morphological characters. Mol Phylogenet Evol 25(3):378–392. https://doi.org/10.1016/S1055-7903(02)00422-0

    Article  CAS  PubMed  Google Scholar 

  • Katoh K, Standley DM (2013) Multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780. https://doi.org/10.1093/molbev/mst010

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kirk PM (1982) New or interesting microfungi VI. Sporidesmiella gen. nov. (Hyphomycetes). Trans Br Mycol Soc 79:479–489. https://doi.org/10.1016/s0007-1536(82)80040-5

    Article  Google Scholar 

  • Larget B, Simon DL (1999) Markov Chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol Evol 16:750–759

    Article  CAS  Google Scholar 

  • Link JHF (1809) Observationes in ordines plantarum naturales. Ges Naturf Freunde Berlin Mag 3:3–42.

  • Liu F, Hu DM, Cai L (2012) Conlarium duplumascospora gen. et. sp. nov. and Jobellisia guangdongensis sp. nov. from freshwater habitats in China. Mycologia 104(5):1178–1186. https://doi.org/10.3852/11-379

    Article  PubMed  Google Scholar 

  • Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA Polymerase II subunit. Mol Biol Evol 16:1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092

    Article  CAS  PubMed  Google Scholar 

  • López MJ, Nichols NN, Dien BS, Moreno J, Bothast RJ (2004) Isolation of microorganisms for biological detoxification of lignocellulosic hydrolysates. Appl Microbiol Biotechnol 64:125–131. https://doi.org/10.1007/s00253-003-1401-9

    Article  PubMed  CAS  Google Scholar 

  • Luo J, Zhang N (2013) Magnaporthiopsis, a new genus in Magnaporthaceae (Ascomycota). Mycologia 105(4):1019–1029. https://doi.org/10.3852/12-359

    Article  PubMed  Google Scholar 

  • Luo J, Walsh E, Zhang N (2015) Toward monophyletic generic concepts in Magnaporthales: species with Harpophora asexual states. Mycologia 107(3):641–646. https://doi.org/10.3852/14-302

    Article  PubMed  Google Scholar 

  • Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, Miadlikowska J, Spatafora J, Johnson D, Hambleton S, Crockett M, Shoemaker R, Sung GH, Lücking R, Lumbsch T, O'Donnell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim YW, Matheny B, Nishida H, Pfister D, Rogers J, Rossman A, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr R, Vilgalys R (2004) Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. Am J Bot 91(10):1446–1480. https://doi.org/10.3732/ajb.91.10.1446

    Article  PubMed  Google Scholar 

  • Maharachchikumbura SSN, Hyde KD, Jones EBG, McKenzie EHC, Huang SK, Abdel-Wahab MA, Daranagama DA, Dayarathne MC, D’souza MJ, Goonasekara ID, Hongsanan S, Jayawardena RS, Kirk PM, Konta S, Liu JK, Liu ZY, Norphanphoun C, Pang KL, Perera RH, Senanayake IC, Shang QJ, Shenoy BD, Xiao Y, Bahkali AH, Kang J, Somrothipol S, Suetrong S, Wen T, Xu JC (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Divers 72:199–301. https://doi.org/10.1007/s13225-015-0331-z

    Article  Google Scholar 

  • Maharachchikumbura SSN, Hyde KD, Jones EBG, McKenzie EHC, Bhat DJ, Dayarathne M, Huang SK, Norphanphoun C, Senanayake IC, Perera RH, Shang Q, Xiao Y, D’souza MJ, Hongsanan S, Jayawardena RS, Daranagama DA, Konta S, Goonasekara ID, Zhuang WY, Jeewon R, Phillips AJL, Abdel-Wahab MA, Al-Sadi AM, Bahkali AH, Boonmee S, Boonyuen N, Cheewangkoon R, Dissanayake AJ, Kang J, Liu JK, Liu X, Liu ZY, Pang KL, Phookamsak R, Promputtha I, Suetrong S, Wen T, Wijayawardene NN (2016) Families of Sordariomycetes. Fungal Divers 79:1–317. https://doi.org/10.1007/s13225-016-0369-6

    Article  Google Scholar 

  • Marincowitz S, Crous PW, Groenewald JZ, Wingfield MJ (2008) Microfungi occurring on the Proteaceae in the fynbos. CBS Biodivers Ser 7:1–166

    Google Scholar 

  • Miller AN, Huhndorf SM (2005) Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi). Mol Phylogenet Evol 35:60–75. https://doi.org/10.1016/j.ympev.2005.01.007

    Article  CAS  PubMed  Google Scholar 

  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 2010, New Orleans, pp 1–8. https://doi.org/10.1109/GCE.2010.5676129

  • MycoBank (2017) available from: http://www.MycoBank.org/. Accessed May 2017

  • Nylander J (2008) MrModeltest2 v. 2.3 (Program for selecting DNA substitution models using PAUP*). Evolutionary Biology Centre, Uppsala

    Google Scholar 

  • Perdomo H, Sutton DA, García D, Fothergill AW, Gené J, Cano J, Summerbell RC, Rinaldi MG, Guarro J (2011) Molecular and phenotypic characterization of Phialemonium and Lecythophora isolates from clinical samples. J Clin Microbiol 49:1209–1216. https://doi.org/10.1128/jcm.01979-10

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pinho DB, Firmino AL, Ferreira-Junior WG, Pereira OL (2013) An efficient protocol for DNA extraction from Meliolales and the description of Meliola centellae sp. nov. Mycotaxon 122:333–345. https://doi.org/10.5248/122.333

    Article  Google Scholar 

  • Pinho DB, Junior JH, Firmino AL, Junior BTH, Mizubuti ESG, Pereira OL (2014) Reappraisal of the black mildews (Meliolales) on Hevea brasiliensis. Trop Plant Pathol 39:89–94. https://doi.org/10.1590/S1982-56762014005000002

    Article  Google Scholar 

  • Ranghoo VM, Hyde KD, Liew ECY, Spatafora JW (1999) Family placement of Ascotaiwania and Ascolacicola based on DNA sequences from the large subunit rRNA gene. Fungal Divers 2:159–168

    Google Scholar 

  • Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol 43:304–311. https://doi.org/10.1007/pl00006090

    Article  CAS  PubMed  Google Scholar 

  • Réblová M (1999) Studies in Chaetosphaeria sensu lato III. Umbrinosphaeria gen. nov. and Miyoshiella with Sporidesmium anamorphs. Mycotaxon 71:13–43

    Google Scholar 

  • Réblová M (2007) Barbatosphaeria gen. et comb. nov., a new genus for Calosphaeria barbirostris. Mycologia 99(5):723–732

    Article  Google Scholar 

  • Réblová M (2009) Teleomorph of Rhodoveronaea (Sordariomycetidae) discovered and re-evaluation of Pleurophragmium. Fungal Divers 36:129–139

    Google Scholar 

  • Réblová M (2011) New insights into the systematics and phylogeny of the genus Jattaea and similar fungi of the Calosphaeriales. Fungal Divers 49:167–198. https://doi.org/10.1007/s13225-011-0099-8

    Article  Google Scholar 

  • Réblová M (2013) Two taxonomic novelties in the Sordariomycetidae: Ceratolenta caudata gen. et sp. nov. and Platytrachelon abietis gen. et comb. nov. for Ceratosphaeria abietis. Mycologia 105(2):462–475. https://doi.org/10.3852/12-199

    Article  PubMed  Google Scholar 

  • Réblová M, Seifert KA (2004) Cryptadelphia (Trichosphaeriales), a new genus for holomorphs with Brachysporium anamorphs and clarification of the taxonomic status of Wallrothiella. Mycologia 96(2):343–367. https://doi.org/10.1080/15572536.2005.11832981

    Article  PubMed  Google Scholar 

  • Réblová M, Winka K (2001) Generic concepts and correlations in ascomycetes based on molecular and morphological data: Lecythothecium duriligni gen. et sp. nov. with a Sporidesmium anamorph, and Ascolacicola austriaca sp. nov. Mycologia 93:478–493. https://doi.org/10.2307/3761734

    Article  Google Scholar 

  • Réblová M, Mostert L, Gams W, Crous PW (2004) New genera in the Calosphaeriales: Togniniella and its anamorph Phaeocrella, and Calosphaeriophora as anamorph of Calosphaeria. Stud Mycol 50:533–550

    Google Scholar 

  • Réblová M, Fournier J, Hyde KD (2010) Achroceratosphaeria, a new ascomycete genus in the Sordariomycetes, and re-evaluation of Ceratosphaeria incolorata. Fungal Divers 43:75–84. https://doi.org/10.1007/s13225-010-0032-6

    Article  Google Scholar 

  • Réblová M, Gams W, Seifert KA (2011) Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales. Stud Mycol 68:163–191. https://doi.org/10.3114/sim.2011.68.07

    Article  PubMed  PubMed Central  Google Scholar 

  • Réblová M, Seifert KA, Fournier J, Štěpánek V (2012) Phylogenetic classification of Pleurothecium and Pleurotheciella gen. nov. and its dactylaria-like anamorph (Sordariomycetes) based on nuclear ribosomal and protein-coding genes. Mycologia 104(6):1299–1314. https://doi.org/10.3852/12-035

    Article  PubMed  Google Scholar 

  • Réblová M, Réblová K, Štěpánek V (2015) Molecular systematics of Barbatosphaeria (Sordariomycetes): multigene phylogeny and secondary ITS structure. Persoonia 35:21–38. https://doi.org/10.3767/003158515X687434

    Article  PubMed  PubMed Central  Google Scholar 

  • Rolshausen PE, Mahoney NE, Molyneux RJ, Gubler WD (2006) A Reassessment of the Species Concept in Eutypa lata, the Causal Agent of Eutypa Dieback of Grapevine. Phytopathology 96(4):369–377. https://doi.org/10.1094/PHYTO-96-0369

    Article  CAS  PubMed  Google Scholar 

  • Schoch CL, Kohlmeyer J, Volkmann-Kohlmeyer B, Tsui CK, Spatafora JW (2006) The halotolerant fungus Glomerobolus gelineus is a member of the Ostropales. Mycol Res 110(3):257–263. https://doi.org/10.1016/j.mycres.2005.10.001

    Article  CAS  PubMed  Google Scholar 

  • Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh SO, Blackwell M, Hillis DM, Griffith GW, Castlebury LA, Rossman AY, Lumbsch HT, Lücking R, Büdel B, Rauhut A, Diederich P, Ertz D, Geiser DM, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O'Donnell K, Sipman H, Rogers JD, Shoemaker RA, Sugiyama J, Summerbell RC, Untereiner W, Johnston PR, Stenroos S, Zuccaro A, Dyer PS, Crittenden PD, Cole MS, Hansen K, Trappe JM, Yahr R, Lutzoni F, Spatafora JW (2009) The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58(2):224–239. https://doi.org/10.1093/sysbio/syp020

    Article  CAS  PubMed  Google Scholar 

  • Schoch CL, Seifert KA, Huhndorf S, Robert V, Spougea JL, Levesqueb CA, Chen W, Fungal Barcoding Consortiuma (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 109(16):6241–6246. https://doi.org/10.1073/pnas.1117018109

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schroeder S, Kim SH, Cheung WT, Sterflinger K, Breuil C (2001) Phylogenetic relationship of Ophiostoma piliferum to other sapstain fungi based on the nuclear rRNA gene. FEMS Microbiol Lett 195(2):163–167. https://doi.org/10.1111/j.1574-6968.2001.tb10515.x

    Article  CAS  PubMed  Google Scholar 

  • Seifert K, Morgan-Jones G, Gams W, Kendrick B (2011) The genera of hyphomycetes. CBS–KNAW Fungal Biodiversity Centre, Utrecht

    Google Scholar 

  • Shenoy BD, Jeewon R, Wu WP, Bhat DJ, Hyde KD (2006) Ribosomal and RPB2 DNA sequence analyses suggest that Sporidesmium and morphologically similar genera are polyphyletic. Mycol Res 110:916–928. https://doi.org/10.1016/j.mycres.2006.06.004

    Article  CAS  PubMed  Google Scholar 

  • Shenoy BD, Jeewon R, Wang H, Amandeep K, Ho WH, Bhat DJ, Crous PW, Hyde KD (2010) Sequence data reveals phylogenetic affinities of fungal anamorphs Bahusutrabeeja, Diplococcium, Natarajania, Paliphora, Polyschema, Rattania and Spadicoides. Fungal Divers 44:161–169. https://doi.org/10.1007/s13225-010-0059-8

    Article  Google Scholar 

  • Shoemaker RA, Hambleton S (2001) “Helminthosporiumasterinum, Polydesmus elegans, Imimyces, and allies. Can J Bot 79:592–599. https://doi.org/10.1139/b01-038

    Article  Google Scholar 

  • Smith GJD, Liew ECY, Hyde KD (2003) The Xylariales: a monophyletic order containing 7 families. Fungal Divers 13:185–218

    Google Scholar 

  • Sogonov MV, Castlebury LA, Rossman AY, Farr DF, White JF (2005) The type species of genus Gnomonia, G. gnomon, and the closely related G. setacea. Sydowia 57:102–119

    Google Scholar 

  • Sogonov MV, Castlebury LA, Rossman AY, Mejía LC, White JF (2008) Leaf-inhabiting genera of the Gnomoniaceae, Diaporthales. Stud Mycol 62:1–77. https://doi.org/10.3114/sim.2008.62.01

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Spatafora JW, Volkmann-Kohlmeyer B, Kohlmeyer J (1998) Independent terrestrial origins of the Halosphaeriales (marine Ascomycota). Am J Bot 85(11):1569–1580. https://doi.org/10.2307/2446483

    Article  CAS  PubMed  Google Scholar 

  • Spatafora JW, Sung GH, Johnson D, Hesse C, O'Rourke B, Serdani M, Spotts R, Lutzoni F, Hofstetter V, Miadlikowska J, Reeb V, Gueidan C, Fraker E, Lumbsch T, Lücking R, Schmitt I, Hosaka K, Aptroot A, Roux C, Miller AN, Geiser DM, Hafellner J, Hestmark G, Arnold AE, Büdel B, Rauhut A, Hewitt D, Untereiner WA, Cole MS, Scheidegger C, Schultz M, Sipman H, Schoch CL (2006) A five-gene phylogeny of Pezizomycotina. Mycologia 98(6):1018–1028

    Article  CAS  PubMed  Google Scholar 

  • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690. https://doi.org/10.1093/bioinformatics/btl446

    Article  CAS  PubMed  Google Scholar 

  • Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML web servers. Syst Biol 57:758–771. https://doi.org/10.1080/10635150802429642

    Article  PubMed  Google Scholar 

  • Su HY, Hyde KD, Maharachchikumbura SSN, Ariyawansa HA, Luo ZL, Promputtha I, Tian Q, Lin CG, Shang QJ, Zhao YC, Chai HM, Liu XY, Bahkali AH, Bhat DJ, McKenzie EHC, Zhou DQ (2016) The families Distoseptisporaceae fam. nov., Kirschsteiniotheliaceae, Sporormiaceae and Torulaceae, with new species from freshwater in Yunnan Province, China. Fungal Divers 80(1):375–409. https://doi.org/10.1007/s13225-016-0362-0

    Article  Google Scholar 

  • Subramanian CV (1992) A reassessment of Sporidesmium (hyphomycetes) and some related taxa. Proc Indian natn Sci Acad B58(4):179–190

    Google Scholar 

  • Suh SO, Blackwell M (1999) Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaceae and Pseudeurotiaceae. Mycologia 91(5):836–848. https://doi.org/10.2307/3761537

    Article  CAS  Google Scholar 

  • Taylor JW, Jacobson DJ, Fisher MC (1999) The evolution of asexual fungi: Reproduction, speciation and classification. Annu Rev Phytopathol 37:197–246. https://doi.org/10.1146/annurev.phyto.37.1.197

    Article  CAS  PubMed  Google Scholar 

  • Thongkantha S, Jeewon R, Vijaykrishna D, Lumyong S, McKenzie EHC, Hyde KD (2009) Molecular phylogeny of Magnaporthaceae (Sordariomycetes) with a new species, Ophioceras chiangdaoense from Dracaena loureiroi in Thailand. Fungal Divers 34:157–173

    Google Scholar 

  • Vilgalys R, Hester M (1990) Rapid genetic identification and mapping enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wu WP, Zhuang WY (2005) Sporidesmium, Endophragmiella and related genera from China. Fungal Divers Res Ser 15:1–351

    Google Scholar 

  • Yaguchi T, Sano A, Yarita K, Suh MK, Nishimura K, Udagawa S (2006) A new Cephalotheca isolate from Korean patient. Mycotaxon 96:309–322

    Google Scholar 

  • Zelski SE, Balto JA, Do C, Raja HA, Miller AN, Shearer CA (2014) Phylogeny and morphology of dematiaceous freshwater microfungi from Perú. IMA Fungus 5(2):425–438. https://doi.org/10.5598/imafungus.2014.05.02.07

    Article  PubMed  PubMed Central  Google Scholar 

  • Zhang H, Dong W, Hyde KD, Maharachchikumbura SSN, Hongsanan S, Bhat DJ, Al-Sadi AM, Zhang D (2017) Towards a natural classification of Annulatascaceae-like taxa: introducing Atractosporales ord. nov. and six new families. Fungal Divers 85(1):75–110. https://doi.org/10.1007/s13225-017-0387-z

  • Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Volkmann-Kohlmeyer B, Sung G-H (2006) An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98:1076–1087. https://doi.org/10.3852/mycologia.98.6.1076

    Article  CAS  PubMed  Google Scholar 

  • Zhang N, Zhao S, Shen Q (2011) A six-gene phylogeny reveals the evolution of mode of infection in the rice blast fungus and allied species. Mycologia 103(6):1267–1276. https://doi.org/10.3852/11-022

    Article  PubMed  Google Scholar 

  • Zhaxybayeva O, Gogarten JP (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3:4

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

We would like to thank The Research of Featured Microbial Resources and Diversity Investigation in the Southwest Karst area (Project No. 2014FY120100) for its financial support. Jing Yang thanks Shaun Pennycook for the corrections to the Latin names.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Zuo-Yi Liu.

Additional information

Section Editor: Kevin Hyde and Christiane Baschien

This article is part of the “Special Issue on Freshwater Ascomycota”

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yang, J., Maharachchikumbura, S.S.N., Liu, JK. et al. Pseudostanjehughesia aquitropica gen. et sp. nov. and Sporidesmium sensu lato species from freshwater habitats. Mycol Progress 17, 591–616 (2018). https://doi.org/10.1007/s11557-017-1339-4

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11557-017-1339-4

Keywords

Navigation