Abstract
Tulasnella spp. are the main fungal symbionts of Brazilian Epidendrum orchids. The taxonomy of these fungi is largely based on ITS rDNA similarity, but culture dependent techniques are still essential to establish the true biological entity of the mycobiont. The aim of this study was to characterize morphologically and molecularly 16 Tulasnella spp. fungi isolated from three different populations of E. secundum and to test the coincidences between morphological and molecular characterization. Two uninucleate rhizoctonia fungi, obtained from Oncidium barbaceniae, and two phytopathogenic isolates were included as outgroups. Qualitative and quantitative morphological characteristics were analyzed using multivariate statistics and were able to distinguish Ceratobasidium, Tulasnella and Thanatephorus genera and separate the isolates of Tulasnella spp. into two groups. Analysis of RAPD (Random Amplified Polymorphic DNA) and ITS rDNA sequences validated the morphological data. Symbionts of O. barbaceniae presented identity to ITS sequences of Ceratobasidium genus, while E. secundum isolates presented identity to two species of Tulasnella. We observed homogeneity among Tulasnella spp. obtained from a single population and from neighboring populations, but there was higher variability among isolates obtained from populations of regions that were farther apart. Morphological data associated with multivariate statistics proved to be a useful tool in the multi-level taxonomy of these orchid-associated fungi and in estimating the diversity of orchid mycorrhizal fungi.
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References
Altschul SF, Madden TL, Schaffer AA et al (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402
Caiafa AN, Silva AF (2005) Composição florística e espectro biológico de um campo de altitude no Parque Estadual da Serra do Brigadeiro, Minas Gerais—Brasil. Rodriguésia 56:163–173
Caiafa AN, Silva AF (2007) Structural analysis of the vegetation on a highland granitic rock outcrop in Southeast Brazil. Rev Brasil Bot 30:657–664
Chen J, Wang H, Guo SX (2012) Isolation and identification of endophytic and mycorrhizal fungi from seeds and roots of Dendrobium (Orchidaceae). Mycorrhiza 22:297–307
Chutima R, Dell B, Lumyong S (2011) Effects of mycorrhizal fungi on symbiotic seed germination of Pecteilis susannae (L.) Rafin (Orchidaceae), a terrestrial orchid in Thailand. Symbiosis 53:149–156
Cruz CD (2008) Programa genes: diversidade genética. Editora UFV, Viçosa
Cruz D, Suárez JP, Kottke I, Piepenbring M, Oberwinkler F (2011) Defining species in Tulasnella by correlating morphology and nrDNA ITS-5.8S sequence data of basidiomata from a tropical Andean Forest. Mycol Prog 10:229–238
Currah RS, Zelmer CD (1992) A key and notes for the genera of fungi with orchids and a new species in the genus Epulorhiza. Rep Tottori Mycol Inst 30:43–59
Dearnaley JDW (2007) Further advances in orchid mycorrhizal research. Mycorrhiza 17:475–486
Dearnaley JDW, Martos F, Selosse MA (2012) Orchid mycorrhizas: molecular ecology, physiology, evolution and conservation aspects. In: Hock B (ed) The Mycota IX: fungal associations, 2nd edn. Springer, Berlin
García VG, Onco MAP, Susan VR (2006) Review. Biology and Systematics of the form genus Rhizoctonia. Span J Agric Res 4:55–79
Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycets—application to the identification of mycorrhizae and rust. Mol Ecol 2:113–118
Hadley G (1970) Non-specificity of symbiotic infection in orchid mycorrhiza. New Phytologist 69:1015–1023
Horton TR, Bruns TD (2001) The molecular revolution in ectomycorrhizal ecology: peeking into the black-box. Mol Ecol 10:1855–1871
Junghans DT, Gomes EA, Barros EG, Guimarães WV, Araújo EF (1998) Genetic diversity of the ectomycorrhizal fungus Pisolithus tinctorius based on RAPD-PCR analysis. Mycorrhiza 7:243–248
Lilja A, Lilja S, Poteri M, Ziren L (1992) Conifer seedling root fungi and root dieback in Finnish nurseries. Scand J For Res 7:547–556
Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220
Martos F, Munoz F, Pailler T, Kottke I, Gonneau C, Selosse MA (2012) The role of epiphytism in architecture and evolutionary constraint within mycorrhizal networks of tropical orchids. Mol Ecol 21:5098–5109
Nogueira RE, Pereira OL, Kasuya MCM, Lanna MC, Mendonça M (2005) Fungos micorrízicos associados e orquídeas em campos rupestres na Região do Quadrilátero Ferrífero, Minas Gerais, Brasil. Acta Bot Bras 3:417–424
Nurfadilah S, Swarts ND, Dixon KW, Lambers H, Merritt DJ (2013) Variation in nutrient-acquisition patterns by mycorrhizal fungi of rare and common orchids explains diversification in a global biodiversity hotspot. Ann Bot 111:1233–1241
Okayama M, Yamato M, Yagame T, Iwase K (2012) Mycorrhizal diversity and specificity in Lecanorchis (Orchidaceae). Mycorrhiza 22(7):545–553
Oliveira SF, Bocayuva MF, Veloso TGR, Bazzolli DMS, Silva CC, Pereira OL, Kasuya MCM (2014) Endophytic and mycorrhizal fungi associated with roots of endangered native orchids from the Atlantic Forest, Brazil. Mycorrhiza 24(1):55–64
Otero JT, Ackerman JD, Bayman P (2002) Diversity and host specificity of endophytic Rhizoctonia-like fungi from tropical orchids. Am J Bot 89:1852–1858
Pereira MC, Valadares RBS (2012) Diversidade e aplicação dos fungos micorrízicos de orquídeas brasileiras. In: Pazza R, Souza EA, Pereira JD, Kavalco KF, Lisboa LCO, Reis LB, Pereira MC (eds) Biodiversidade em foco. Araucária Comunicação Integrada, Rio Paranaíba
Pereira OL, Rollemberg CL, Borges AC, Matsuoka K, Kasuya MCM (2003) Epulorhiza epiphytica sp. nov. isolated from mycorrhizal roots of epiphytic orchids in Brazil. Mycoscience 44:153–155
Pereira OL, Kasuya MCM, Borges AC, Araújo EF (2005a) Morphological and molecular characterization of mycorrhizal fungi isolated from neotropical orchids in Brazil. Can J Bot 83:54–65
Pereira OL, Kasuya MCM, Rollemberg CL, Borges AC (2005b) Indução in vitro da germinação de sementes de Oncidium flexuosum (Orchidaceae) por fungos micorrízicos rizoctonióides. Rev Bras Ciências Solo 29:199–206
Pereira OL, Kasuya MCM, Rollemberg CL, Borges GM (2005c) Isolamento e identificação de fungos micorrízicos rizoctonióides associados a três espécies de orquídeas epífitas neotropicais no Brasil. Rev Bras Ciências Solo 29:191–197
Pereira MC, Kasuya MCM, Pereira OL, Costa MD, Rocha RB (2009) Diversidade de fungos micorrízicos Epulorhiza spp. isolados de Epidendrum secundum (Orchidaceae). Rev Bras Ciências Solo 33:1187–1197
Pereira MC, Torres DP, Guimarães FAR, Pereira OL, Kasuya MCM (2011) Germinação de sementes e desenvolvimento de protocormos de Epidendrum secundum Jacq. (Orchidaceae) em associação com fungos micorrízicos do gênero Epulorhiza. Acta Bot Bras 25(3):534–541
Rasmussen HN (2002) Recent developments in the study of orchid mycorrhiza. Plant Soil 244:149–163
Roberts P (1999) Rhizoctonia-forming fungi: a taxonomic guide. Royal Botanic Gardens, Kew
Schäfer C, Wöstemeyer J (1992) Random primer dependent PCR differentiates aggressive from non-aggressive isolates of the oilseed rape pathogen Phoma lingam (Leptosphaeria maculans). J Phytopathol 136:124–136
Shan XC, Liew EC, Weatherhead MA, Hodkiss LJ (2002) Characterization and taxonomy placement of Rhizoctonia-like endophytes from orchid roots. Mycologia 94(2):230–239
Sharon M, Kuninaga S, Hyakumachi M, Sneh B (2006) The advancing identification and classification of Rhizoctonia spp. using molecular and biotechnological methods compared with the classical anastomosis grouping. Mycoscience 47:299–316
Sharon M, Kuninaga S, Hyakumachi M, Naito S, Sneh B (2008) Classification of Rhizoctonia spp. using rDNA-ITS sequence analysis supports the genetic basis of the classical anastomosis grouping. Mycoscience 49(2):93–114
Singh D (1981) The relative importance of characters affecting genetic divergence. Indian J Genet Plant Breed 41:237–245
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
Valadares RBS, Pereira MC, Otero JT, Cardoso EJ (2012) Narrow fungal mycorrhizal diversity in a population of the orchid Coppensia doniana. Biotropica 44(1):114–122
White TJ, Bruns TD, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR Protocols: a guide to methods and applications. Academic, San Diego
Zettler LW (1997) Terrestrial orchid conservation by symbiotic seed germination: techniques and perspectives. Selbyana 18:188–194
Acknowledgments
The authors thank the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) and the Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG) for financial support of project and for the PhD scholarship of the first author; the Instituto Estadual de Florestas (IEF) for granting us permission to collect material in the conservation area Serra do Brigadeiro, Minas Gerais; Gilmar Valente for his help during collections; two anonymous referees and Manuscript Editor of Symbiosis for improvements and advice.
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Pereira, M.C., da Silva Coelho, I., da Silva Valadares, R.B. et al. Morphological and molecular characterization of Tulasnella spp. fungi isolated from the roots of Epidendrum secundum, a widespread Brazilian orchid. Symbiosis 62, 111–121 (2014). https://doi.org/10.1007/s13199-014-0276-0
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DOI: https://doi.org/10.1007/s13199-014-0276-0