Skip to main content
Log in

Tubeufiales, ord. nov., integrating sexual and asexual generic names

  • Published:
Fungal Diversity Aims and scope Submit manuscript

Abstract

Tubeufiaceae is based on the generic type Tubeufia, which is characterized by superficial, oval and bright ascomata, bitunicate asci, mostly long fusiform to filiform, transeptate ascospores and hyphomycetous asexual states with helicosporous conidia. Most species in this family are saprobic on terrestrial woody substrates and some are aquatic. Their distinct morphology as well as combined LSU, SSU and TEF1 sequence analysis show that Tubeufiaceae should be accommodated in a new order Tubeufiales, which is introduced in this paper. Phylogenetic analyses of combined LSU and ITS sequences were used to resolve genera and species within the family Tubeufiaceae. In this study, we examine and incorporate sexual and asexual states of genera in Tubeufiales to provide a modern treatment, based on single names. An epitype for Tubeufia javanica, the type species of Tubeufia, is designated and represents Tubeufia sensu stricto. The genera Acanthophiobolus, Acanthostigma, Boerlagiomyces, Chlamydotubeufia, Kamalomyces, Podonectria, Thaxteriella and Thaxteriellopsis are accepted, Acanthostigmina is reinstated, and the asexual genera Aquaphila, Helicoma, Helicomyces, Helicosporium and Tamhinispora are accepted in Tubeufiaceae. Three new genera Acanthohelicospora, Helicangiospora and Neoacanthostigma are introduced. The genus Bifrontia is added to the family based on morphological similarity. The incongruous morphological genera Acanthostigmella, Amphinectria, Chaetocrea, Chaetosphaerulina, Glaxoa, Malacaria, Melioliphila, Paranectriella, Puttemansia, Rebentischia and Uredinophila are excluded from Tubeufiaceae despite having characteristic ascomata with setae and multiseptate long spores. A key to genera accepted in Tubeufiaceae is provided.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11
Fig. 12
Fig. 13
Fig. 14
Fig. 15
Fig. 16
Fig. 17
Fig. 18
Fig. 19
Fig. 20
Fig. 21
Fig. 22
Fig. 23
Fig. 24
Fig. 25
Fig. 26
Fig. 27
Fig. 28
Fig. 29
Fig. 30
Fig. 31
Fig. 32
Fig. 33
Fig. 34
Fig. 35
Fig. 36
Fig. 37

Similar content being viewed by others

References

  • Ariyawansa HA, Jones EBG, Suetrong S, Alias SA, Kang JC, Hyde KD (2013) Halojulellaceae a new family of the order Pleosporales. Phytotaxa 105:11–20

    Google Scholar 

  • Ariyawansa HA, Tanaka K, Thambugala KM, Phookamsak R, Tian Q, Camporesi E, Hongsanan S, Monkai J, Wanasinghe DN, Mapook A, Chukeatirote E, Kang JC, Xu JC, McKenzie EHC, Jones EGB, Hyde KD (2014a) A molecular phylogenetic reappraisal of the Didymosphaeriaceae (=Montagnulaceae). Fungal Divers doi:10.1007/s13225-014-0305-6

  • Ariyawansa HA, Thambugala KM, SSN Maharachchikumbura, Udayanga D, Manamgoda DS, Daranagama A, Shivas RG, Jayawardena R, Phookamsak R, Senanayake IC Liu JK, Tian Q, Camporesi E, McKenzie EHC, Lücking R, Hawksworth DL, JC Kang, Chukeatirote E, Mortimer PE, JC Xu, Jones EGB, Hyde KD (2014b) Epitypification and neotypification. Fungal Divers (in press)

  • Barr ME (1977) Acanthostigmella (Herpotrichiellaceae). Mycotaxon 6:17–23

    Google Scholar 

  • Barr ME (1979) A classification of Loculoascomycetes. Mycologia 71:935–957

    Google Scholar 

  • Barr ME (1980) On the family Tubeufiaceae (Pleosporales). Mycotaxon 12:137–167

    Google Scholar 

  • Berkeley MJ (1876) Notices of North American fungi. Grevillea 4:105–106

    Google Scholar 

  • Bhat DJ (2010) Fascinating Microfungi (Hyphomycetes) of Western Ghats, India Publisher Broadway Book Centre 1–221

  • Bigelow HE, Barr ME (1963) Contribution to the fungus flora of northeastern North America III. Rhodora 65:289–309

    Google Scholar 

  • Boonmee S, Zhang Y, Chomnunti P, Chukeatirote E, Tsui CKM, Bahkali AH, Hyde KD (2011) Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis. Fungal Divers 51:63–102

    Google Scholar 

  • Boonmee S, Hyde KD, KoKo TW, Chukeatirote E, Chen H, Cai L, McKenzie EHC, Jones EBG, Kodsueb R, Hassan BA (2012) Two new Kirschsteiniotheliaceae species with Dendryphiopsis anamorphs cluster in Kirschsteiniotheliaceae fam. nov. Mycologia 104:698–714

    PubMed  Google Scholar 

  • Booth C (1964) Studies of Pyrenomycetes: VII. Mycol Pap 94:1–16

    Google Scholar 

  • Brock PM, Döring H, Bidartondo MI (2009) How to know unknown fungi: the role of a herbarium. New Phytol 181:719–724

    PubMed  Google Scholar 

  • Butzin F (1977) Boerlagiomyces, ein neuer Name für die Pilzgattung Boerlagella. Willdenowia 8:37–40

    Google Scholar 

  • Cannon PF (1997) Two new genera of Ascomycota, and other new or interesting fungi from Slapton Ley National Nature Reserve and its environs. Syst Ascom 15:121–138

    Google Scholar 

  • Carris LM (1989) Vaccinium fungi: Helicoma vaccinii sp.nov. Mycotaxon 36(1):29–34

    Google Scholar 

  • Castersana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540–552

    Google Scholar 

  • Chomnunti P, Bhat DJ, Jones EBG, Chukeatirote E, Bahkali AH, Hyde KD (2012) Trichomeriaceae, a new sooty mould family of Chaetothyriales. Fungal Divers 56:63–76

    Google Scholar 

  • Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu J, Liu XZ, Stadler M, Hyde KD (2014) The sooty moulds. Fungal Divers 66:1–36

    Google Scholar 

  • Chomnunti P, Schoch CL, Aguirre–Hudson B, KoKo TW, Hongsanan S, Jones EBG, Kodsueb R, Chukeatirote E, Bahkali AH, Hyde KD (2011) Capnodiaceae. Fungal Divers 51:103–134

    PubMed  PubMed Central  Google Scholar 

  • Clements FE, Shear CL (1931) Genera of Fungi, 2nd edn. H.W. Wilson Company, New York, pp i–vii, 58 plates

    Google Scholar 

  • Corda ACJ (1837) Icones fungorum hucusque cognitorum, vol 1. J. G. Calve, Prague, pp 1–32

    Google Scholar 

  • Crane JL, Shearer CA, Barr ME (1998) A revision of Boerlagiomyces with notes and a key to the saprobic genera of Tubeufiaceae. Can J Bot 76:602–612

    Google Scholar 

  • De Notaris G (1863) Sfériacei Italici. Centuria I. Fasc. 2–3. Genova 90 pp 120 pl

  • Dubey R, Neelima AM (2013) Kamalomyces mahabaleshwarensis sp. nov. (Tubeufiaceae) from the Western Ghats, India. Mycosphere 4:760–764

    Google Scholar 

  • Eberhardt U (2010) A constructive step towards selecting a DNA barcode for fungi. New Phytol 187:266–268

    Google Scholar 

  • Ellis MB (1971) Dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew, pp 1–608

    Google Scholar 

  • Figueiredo JG, Goulin EH, Tanaka F, Stringari D, Kava-Cordeiro V, Galli-Terasawa LV, Staats CC, Schrankand A, Glienke C (2010) Agrobacterium tumefaciens-mediated transformation of Guignardia citricarpa. J Microbiol Methods 80:143–147

    PubMed  CAS  Google Scholar 

  • Gams W, Humber RA, Jaklitsch W, Kirschner R, Stadler M (2012) Minimizing the chaos following the loss of Article 59: Suggestions for a discussion. Mycotaxon 119:495–507

    Google Scholar 

  • Glez-Peña D, Gómez-Blanco D, Reboiro-Jato M, Fdez-Riverola F, Posada D (2010) ALTER: program–oriented format conversion of DNA and protein alignments. Nucleic Acids Res 38(2):14–18. doi:10.1093/nar/gkq321

    Google Scholar 

  • Goh TK, Hyde KD, Ho WH (1998) Aquaphila albicans gent. et sp. nov., a hyphomycete from submerged wood in the tropics. Mycol Res 102(5):587–592

  • Goos RD (1986) A review of the anamorph genus Helicoma. Mycologia 78:744–761

    Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Hennings PC (1904) Fungi Amazonici a cl. Ernesto Ule collecti II. Hedwigia 43:242–273

    Google Scholar 

  • Hennings PC (1902) Fungi S. Paulenses I. a cl. Puttemans collecti. Hedwigia 41:104–118

    Google Scholar 

  • Hawksworth DL, McNeill J, de Beer ZW, Wingfield JW (2013) Names of fungal species with the same epithet applied to different morphs: how to treat them. IMA Fungus 4:53–56

    PubMed  PubMed Central  Google Scholar 

  • Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James ST, Kirk PM, Lucking R, Lumbsch HT, Lutzoni F, Matheny PB, Mclaughlin DJ, Powell MJ, Redhed S, Schoch CL, Spatafora JF, Stalpers JA, Vilgalys R, Aime MC, Aptroot AA, Bauer R, Begerow D, Benny GL, Castelbury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironisde JE, Koljag U, Kurtzman CP, Larsson KH, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo JM, Mozley–Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJ, Zhang N (2007) A higher-level phylogenetic classification of the fungi. Mycol Res 111:509–547

    PubMed  Google Scholar 

  • Hongsanan S, Li YM, Liu JK, Hofmann T, Piepenbring M, Bhat JB, Boonmee S, Doliom M, Singtripop C, Tian Q, Mapook A, Zeng X, Xu J, Wu XH, Hyde KD (2014) Revision of Asterinales. Fungal Divers. doi:10.1007/s13225-014-0307-4

  • Hsieh WH, Chen CY, Sivanesan A (1998) Six new ascomycetes from Taiwan. Mycol Res 102:228–234

    Google Scholar 

  • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755

    PubMed  CAS  Google Scholar 

  • Hyde KD (1992) Tropical Australian freshwater fungi 4. Halosarpheia aquatica sp. nov., Garethjonesia lacunosispora gen. et sp. nov. and Ophioceras dolichostomum (Ascomycetes). Aust Syst Bot 5:407–414

    Google Scholar 

  • Hyde KD, Jones EBG, Liu JK, Ariyawansa H, Boehm E, Boonmee S, Braun U, Chomnunti P, Crous PW, Dai DQ, Diederich P, Dissanayake A, Doilom M, Doveri F, Hongsanan S, Jayawardena R, Lawrey JD, Li YM, Liu YX, Lücking R, Monkai J, Muggia L, Nelsen MP, Pang KL, Phookamsak R, Senanayake IC, Shearer CA, Suetrong S, Tanaka K, Thambugala KM, Wijayawardene NN, Wikee S, Wu HX, Zhang Y, Aguirre-Hudson B, Alias AS, Aptroot A, Bahkali AH, Bezerra JL, Bhat DJ, Camporesi E, Chukeatirote E, Gueidan C, Hawksworth DL, Hirayama K, Hoog SD, Kang JC, Knudsen K, Li WJ, Li XH, Liu ZY, Mapook A, McKenzie EHC, Miller AN, Mortimer PE, Phillips AJL, Raja HA, Scheuer C, Schumm F, Taylor JE, Tian Q, Tibpromma S, Wanasinghe DN, Wang Y, Xu JC, Yacharoen S, Yan JY, Zhang M (2013) Families of Dothideomycetes. Fungal Divers 63:1–313

    Google Scholar 

  • Hyde KD, McKenzie EHC, KoKo TW (2011) Towards incorporating anamorphic fungi in a natural classification-checklist and notes for 2010. Mycosphere 2:1–88

    Google Scholar 

  • Hyde KD, Zhang Y (2008) Epitypification: should we epitypify? J Zhejiang Univ Sci B 9:842–846

    PubMed  PubMed Central  Google Scholar 

  • Index Fungorum (2014) http://www.indexfungorum.org/Names/Names.asp, Accession Date − 01 Jan 2014

  • Karsten P (1869) Fungi Fenniae Exsiccati, Fasc. 9: no. 881. Mycol Fenn 2:1–250

    Google Scholar 

  • Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth & Bisby’s dictionary of the fungi (9th ed.). Wallingford, CABI International pp 1−655

  • Kirschner R, Piepenbring M (2006) A new fungicolous species of Titaea and new reports of Bahusaganda indica and Exosporium ampullaceum (hyphomycetes) from tropical rainforests in Panama. Fungal Divers 21:93–103

    Google Scholar 

  • Kodsueb R, Jeewon R, Vijaykrishna D, Mckenzie EHC, Lumyong P, Lumyong S, Hyde KD (2006) Systematic revision of Tubeufiaceae based on morphological and molecular data. Fungal Divers 21:105–130

    Google Scholar 

  • Kodsueb R, Lumyong S, Lumyong P, McKenzie EHC, Ho WH, Hyde KD (2004) Acanthostigma and Tubeufia species, including T. claspisphaeria sp. nov., from submerged wood in Hong Kong. Mycologia 96:667–674

    PubMed  Google Scholar 

  • Linder DH (1929) A monograph of the helicosporous fungi. Ann Mo Bot Gard 16:227–338

    Google Scholar 

  • Link HF (1809) Observationes in ordines plantarum naturales. Dissertatio I Mag Ges naturf Fr Berl 3:3–42

  • Liu JK, Phookamsak R, Doilom M, Wiki S, Mei LY, Ariyawansha H, Boonmee S, Chomnunti P, Dai DQ, Bhat DJ, Romero AI, Xhuang WY, Monkai J, Jones EBG, Chukeatirote E, KoKo TW, Zhoa YC, Wang Y, Hyde KD (2012) Towards a natural classification of Botryosphaeriales. Fungal Divers 57:149–210

    Google Scholar 

  • Liu JK, Phookamsak R, Jones EBG, Zhang Y, KoKo TW, Hu HL, Boonmee S, Doilom M, Chukeatirote E, Bahkali AH, Wang Y, Hyde KD (2011) Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Divers 51:135–154

    Google Scholar 

  • Lücking R (2008) Taxonomy: a discipline on the brink of extinction: are DNA barcode scanners the future of biodiversity research? Arch Sci 61:75–88

    Google Scholar 

  • Lumbsch HT, Huhndorf SM (2010) Myconet Volume 14. Part one. Outline of Ascomycota-2009. Part Two. Notes on Ascomycete Systematics. Nos. 4751–5113. Fieldiana Life Earth Sci 1:1–64

    Google Scholar 

  • Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch CL, Arnold AE, Miadlikowska J, Spatafora J, Johnson D, Hambleton S, Crockett M, Shoemaker R, Sung GH, Lücking R, Lumbsch T, O’Donnell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim YW, Matheny B, Nishida H, Pfister D, Rogers J, Rossman AY, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr R, Vilgalys R (2004) Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. Am J Bot 91:1446–1480

    PubMed  Google Scholar 

  • McNeill J, Redhead SA, Wiersema JH (2012) Guidelines for proposals to conserve or reject names. Taxon 61:248–251

    Google Scholar 

  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE). San Diego Supercomput. Center, New Orleans, pp 1–8

    Google Scholar 

  • Müller E (1950) Die Schweizerischen Arten der Gattung Leptosphaeria, und ihrer Verwandten. Sydowia 4:185–319

    Google Scholar 

  • Nees von Esenbeck CDG (1817) System der Pilze und Schwämme. Würtzburg 1–334

  • Norman JM (1872) Fuligines lichenosae eller Moriolei. Bot Notiser 1872:9–20

    Google Scholar 

  • Page RDM (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358

    PubMed  CAS  Google Scholar 

  • Penzig O, Saccardo PA (1904) Icones fungorum javanicorum. Brill Publishers, Leiden

    Google Scholar 

  • Pérez-Ortega S, Suija A, Crespo A, de los Ríos A (2014) Lichenicolous fungi of the genus Abrothallus (Dothideomycetes: Abrothallales ordo nov.) are sister to the predominantly aquatic Janhulales. Fungal Divers 64:295–304

    Google Scholar 

  • Petrak F (1951) Ergebnisse einer Revision der Grundtypen verschiedener Gattungen der Askomyzeten und Fungi imperfecti. Sydowia 26:169–198

    Google Scholar 

  • Petrak F (1953) Ein Beitrag zur Pilzflora Floridas. Sydowia 7:103–132

    Google Scholar 

  • Petrak F, Sydow H (1936) Kritisch-systematische Originaluntersuchungen über Pyrenomyzeten, Sphaeropsideen und Melanconieen. VII. Ann Mycologici 21:349–384

    Google Scholar 

  • Phillips W, Plowright CB (1877) New and rare British fungi. Grevillea 6:22–29

    Google Scholar 

  • Phookamsak R, Liu JK, McKenzie EHC, Manamgoda DS, Chatpapamon C, Ariyawansa H, Thambugala KM, Dai DQ, Camporesi E, Chukeatirote E, Wijayawardene NN, Mortimer PE, Xu JC, Hyde KD (2014) Revision of Phaeosphaeriaceae. Fungal Divers. doi:10.1007/s13225-014-0308-3

  • Pirozynski KA (1972) Microfungi of Tanzania. I. Miscellaneous Fungi on Oil Palm. II. New Hyphomycetes. Mycol Pap 12:1–64

    Google Scholar 

  • Pirozynski KA (1977) Notes on hyperparasitic Sphaeriales, Hypocreales and ‘hypocreoid Dothideales’. Kew Bull 31:595–610

    Google Scholar 

  • Promputtha I, Miller AN (2010) Three new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from Great Smoky Mountains National Park. Mycologia 102:574–587

    PubMed  Google Scholar 

  • Rajeshkumar KC, Sharma R (2013) Tamhinispora a new genus belongs to family Tubeufiaceae from the Western Ghats, India based on morphology and phylogenetic analysis. Mycosphere 4:165–174

    Google Scholar 

  • Réblová M, Barr M (2000) The genus Acanthostigma (Tubeufiaceae, Pleosporales). Sydowia 52:258–285

    Google Scholar 

  • Rogerson CT (1970) The hypocrealean fungi (Ascomycetes, Hypocreales). Mycologia 62:865–910

    PubMed  CAS  Google Scholar 

  • Rossman AY (1977) The genus Ophionectria (Euascomycetes, Hypocreales). Mycologia 69:355–391

    Google Scholar 

  • Rossman AY (1978) Podonectria, a genus in the Pleosporales on scale insects. Mycotaxon 7:163–182

    Google Scholar 

  • Rossman AY (1979) A preliminary account of the taxa described in Calonectria. Mycotaxon 8:485–558

    Google Scholar 

  • Rossman AY (1983) The phragmosporous species of Nectria and related genera. Mycol Pap 150:1–164

    Google Scholar 

  • Rossman AY (1987) The Tubeufiaceae and similar Loculoascomycetes. Mycol Pap 157:1–71

    Google Scholar 

  • Rossman AY, Samuels GJ, Rogerson CT, Lowen R (1999) Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248

    Google Scholar 

  • Saccardo PA (1876) Fungi Veneti novi vel critici. Nuov G Bot Ital Ser 5(8):181–211

    Google Scholar 

  • Saccardo PA (1877) Fungi venetino vive criticive Mycologiae Venetae addendi. Michelia 1:1–72

    Google Scholar 

  • Saccardo PA (1883) Sylloge Fungorum. Patavii Ital 2:1–815

    Google Scholar 

  • Saccardo PA (1972) Supplementum Universale Pars XI. Sylloge Fungorum 26:224

    Google Scholar 

  • Saccardo PA, Sydow P (1899) Sylloge Fungorum 14:1–724

    Google Scholar 

  • Saccardo PA, Saccardo D (1905) Supplementum universale. Pars VI. Hymenomycetae–Laboulbeniomycetae. Sylloge Fungorum 17:860

    Google Scholar 

  • Samuels GJ, Rossman AY, Müller E (1979) Life history studies of Brazilian Ascomycetes 6. Three species of Tubeufia with, respectively, dictyosporouspycnidial and helicosporous anamorphs. Sydowia 31:180–192

    Google Scholar 

  • Sánchez RM, Bianchinotti MV (2010) New records in the Tubeufiaceae from Andean Patagonian forests of Argentina. Mycotaxon 111:131–141

    Google Scholar 

  • Sánchez RM, Miller AN, Bianchinotti MV (2012) A new species of Acanthostigma (Tubeufiaceae, Dothideomycetes) from the southern hemisphere. Mycologia 104:223–231

    PubMed  Google Scholar 

  • Scheuer C (1988) Ascomyceten auf Cyperaceen und Juncaceen im Ostalpen-raum. Bibl Mycol 123:1–124

    Google Scholar 

  • Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98:1041–1052

    PubMed  CAS  Google Scholar 

  • Schoch CL, Crous PW, Groenewald J, Barres B, Boehm E, de Gruyter J, de Hoog G, Dixon LJ, Fournier J, Grube M, Gueidan C, Harada Y, Hatakeyama S, Hirayama K, Hosoya T, Hyde KD, Jones EBG, Kohlmeyer J, Lucking R, Lumbsch H, Lutzoni F, Marvanova L, Mbatchou J, Miller A, Mugambi G, Muggia L, Nelson M, Nelson P, Owensby C, Phongpaichit S, Pointing S, Pujade-Renaud V, Raja H, Rivas-Plata E, Robbertse B, Ruibal C, Sakayaroj J, Sano T, Selbmann L, Shearer C, Shirouzu T, Slippers B, Suetrong S, Tanaka K, Volkmann-Kohlmeyer B, Wood A, Woudenberg J, Yonezawa H, Zhang Y, Spatafora J (2009) A class wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1–15

    PubMed  CAS  PubMed Central  Google Scholar 

  • Seaver FJ (1909) The Hypocreales of North America - I. Mycologia 1:41–76

    Google Scholar 

  • Seaver FJ, Waterston JM (1940) Contribution to the mycoflora of Bermuda-I. Mycologia 32:388–407

    Google Scholar 

  • Seifert KA, Morgan-Jones G, Gams W, Kendrick B (2011) The Genera of Hyphomycetes. CBS Fungal Biodiversity Centre, Utrecht

    Google Scholar 

  • Shearer CA (1987) Helicoma chlamydosporum, a new hyphomycete from submerged wood in Panama. Mycologia 79:468–472

    Google Scholar 

  • Sivanesan A (1984) The bitunicate Ascomycetes and their anamorphs. J Cramer, Vaduz

    Google Scholar 

  • Spegazzini CL (1924) Algunos honguitos portoriqueños. Bol Acad Nac Ci 26:335–368

    Google Scholar 

  • Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML Web Servers. Syst Biol 57:758–771

    PubMed  Google Scholar 

  • Stanley SJ, Hyde KD (1997) Boerlagiomyces grandisporus sp. nov., a new tropical freshwater ascomycete from the Philippines. Mycol Res 101(5):635–640

    Google Scholar 

  • Subramanian C, Sekar G (1982) Thaxteriellopsis lignicola and its Moorella anamorph. Proc Indian Acad (Plant Sci) 91:1–7

    Google Scholar 

  • Sydow H (1927) Fungi in itinere costaricense collecti. Ann Mycologici 25:1–160

    Google Scholar 

  • Sydow H (1930) Fungi venezuelani. Ann Mycologici 28:29–224

    Google Scholar 

  • Taylor JW (2011) One Fungus = One Name: DNA and fungal nomenclature twenty years after PCR. IMA Fungus 2:113–120

    PubMed  PubMed Central  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731–2739

  • Thambugala KM, Ariyawansa HA, Li YM, Boonmee S, Hongsanan S, Tian Q, Singtripop C, Bhat JD, Camporesi E, Jayawardena R, Liu ZY, Xu JC, Chukeatirote E, Hyde KD (2014) Dothideales. Fungal Divers. doi:10.1007/s13225-014-0303-8

  • Tsui CKM, Berbee ML (2006) Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mol Phylogenet Evol 39:587–597

    PubMed  CAS  Google Scholar 

  • Tsui CKM, Sivichai S, Berbee ML (2006) Molecular systematics of Helicoma, Helicomyces and Helicosporium and their teleomorphs inferred from rDNA sequences. Mycologia 98:94–104

    PubMed  CAS  Google Scholar 

  • Tsui CKM, Sivichai S, Rossman AY, Berbee ML (2007) Tubeufia asiana, the teleomorph of Aquaphila albicans in the Tubeufiaceae, Pleosporales, based on cultural and molecular data. Mycologia 99:884–894

    PubMed  CAS  Google Scholar 

  • Untereiner WA, Straus NA, Malloch D (1995) A molecular-morphotaxonomic approach to the systematics of the Herpotrichiellaceae and allied black yeasts. Mycol Res 99:897–913

    CAS  Google Scholar 

  • Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246

    PubMed  CAS  PubMed Central  Google Scholar 

  • Villesen P (2007) FaBox: an online toolbox for fasta sequences. Mol Ecol Notes 7(6):965–968. doi:10.1111/j.1471-8286.2007.01821.x

    CAS  Google Scholar 

  • Vizioli J (1923) Some pyrenomycetes of Bermuda. Mycologia 15:107–119

    Google Scholar 

  • Von Arx JA, Müller E (1975) A re–evaluation of the bitunicate Ascomycetes with keys to families and genera. Stud Mycol 9:1–159

    Google Scholar 

  • Von Höhnel F (1905) Mycologische Fragmente. LXXVII-XCVII. Ann Mycologici 3:323–339

    Google Scholar 

  • Von Höhnel F (1909a) Fragmente zur Mykologie: IX. Mitteilung (Nr. 407 bis 467). Sitzb Akad Wiss Wien Kl 118:1461–1552

    Google Scholar 

  • Von Höhnel F (1909b) Fragmente zur Mykologie 297. Über Paranectria stromaticola P. Henn. Sitzb Akad Wiss Wien Kl 119:823–824

    Google Scholar 

  • Von Höhnel F (1910) Fragmente zur Mykologie: X. Mitteilung (Nr. 468 bis 526). Sitzb Akad Wiss Wien Kl 119:393–473

    Google Scholar 

  • Von Höhnel F (1919) Fragmente zur Mykologie. XXII Mitteilungen, nr. 1092 bis 1153. Sber Akad Wiss Wien Math Naturw Kl 1:549–634

    Google Scholar 

  • Wijayawardene NN, Crous PW, Kirk PM, Hawksworth DL, Boonmee S, Braun U, Chomnunti P, Dai DQ, D'souza MJ, Diederich P, Dissanayake A, Doilom M, Hongsanan S, Jones EBG, Groenewald JZ, Jayawardena R, Lawrey JD, Liu JK, Lücking R, Madrid H, Manamgoda DS, Muggia L, Nelsen MP, Phookamsak R, Suetrong S, Tanaka K, Thambugala KM, Wikee S, Zhang Y, Aptroot A, Ariyawansa HA, Bahkali AH, Bhat JD, Gueidan C, De Hoog GS, Knudsen K, McKenzie EHC, Miller AN, Mortimer PE, Wanasinghe DN, Phillips AJL, Raja HA, Slippers B, Shivas RS, Taylor JE, Wang Y, Woudenberg JHC, Piątek M, Cai L, Jaklitsch WM, Hyde KD (2014) Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names. Fungal Divers (in press)

  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315–322

    Google Scholar 

  • Zhang Y, Crous PW, Schoch CL, Bahkali AH, Guo LD, Hyde KD (2011) A molecular, morphological and ecological re-appraisal of Venturiales a new order of Dothideomycetes. Fungal Divers 51:249–277

    PubMed  PubMed Central  Google Scholar 

  • Zhang Y, Crous PW, Schoch CL, Hyde KD (2012) Pleosporales. Fungal Divers 52:1–225

    Google Scholar 

  • Zhang Y, Schoch CL, Fournier J, Crous PW, de Gruyter J, Woudenberg JHC, Hirayama K, Tanaka K, Pointing SB, Spatafora JW, Hyde KD (2009) Multi–locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re–evaluation. Stud Mycol 64:85–102

    PubMed  CAS  PubMed Central  Google Scholar 

  • Zhao G, Liu X, Wu W (2007) Helicosporous hyphomycetes from China. Fungal Divers 26:313–524

    Google Scholar 

Download references

Acknowledgments

This work was supported by TRF/BIOTEC program Biodiversity Research and Training Grant BRT R_251181, BRT R_253012, USDA-ARS, Systematic Mycology and Microbiology Laboratory (SMML) and partially by the Mushroom Research Foundation, Chiang Rai Province for financial support. The International Fungal Research and Development Centre, The Research Institute of Resource Insects, the Chinese Academy of Forestry (Bailongsi, Kunming 650224, China) and Mae Fah Luang University (grant for study Dothideomycetes No. 56101020032) are also thanked for research facilities. Gareth Jones is supported by the Distinguished Scientist Fellowship Program (DSFP), King Saud University, Saudi Arabia. K. D. Hyde thanks The Chinese Academy of Sciences, project number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany. Appreciation is extended to the CBS-KNAW Fungal Biodiversity Centre, The Netherlands, the International Fungal Research & Development Centre, Research Institute of Resource Insects, Chinese Academy of Forestry and the State key lab of Mycology, Institute of Microbiology, Chinese Academic of Science, Beijing, China for provides molecular sequences. Special thanks also go to Lisa A. Castlebury, Donald W. Walker, Cesar Herrera, Shanon Dominick, Sajeewa S. N. Maharachchikumbura, Nalin N. Wijayawardene, Dhanushka Udayanga and Dimuthu S. Manamgoda for their assistance.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kevin D. Hyde.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary Table 1

(DOC 367 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Boonmee, S., Rossman, A.Y., Liu, JK. et al. Tubeufiales, ord. nov., integrating sexual and asexual generic names. Fungal Diversity 68, 239–298 (2014). https://doi.org/10.1007/s13225-014-0304-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13225-014-0304-7

Keywords

Navigation