Abstract
The classification of subclass Xylariomycetidae is revisited with additional collections and phylogeny based on novel rDNA sequence data. Phylogenetic inferences are provided and are based on analysis of 115 sequence data, including new data for 27 strains. An updated outline to the subclass is presented based on the phylogenies and comprises two orders, 18 families and 222 genera. An account of each order, family and genus in the subclass is given. We accept the orders Amphisphaeriales and Xylariales based on morphological and phylogenetic evidence. Amphisphaeriales comprises Amphisphaeriaceae, Bartaliniaceae fam. nov., Clypeosphaeriaceae, Discosiaceae fam. nov., Pestalotiopsidaceae fam. nov. and Phlogicylindriaceae fam. nov. Xylariales comprises Apiosporaceae, Cainiaceae, Coniocessiaceae, Diatrypaceae, Graphostromataceae (doubtful), Hyponectriaceae, Iodosphaeriaceae, Lopadostomaceae fam. nov., Melogrammataceae, Pseudomassariaceae fam. nov., Vialaeaceae and Xylariaceae. The new genera and species introduced are Arthrinium hyphopodii, A. subglobosa, Cainia anthoxanthis, Ciferriascosea gen. nov., C. fluctamurum, C. rectamurum, Discosia neofraxinea, D. pseudopleurochaeta, Hyalotiella rubi, Seimatosporium cornii, S. ficeae, S. vitis and Truncatella spartii.
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References
Adamčíková K, Juhásová G, Kobza M (2011) The first report of Libertella spp. on Fagaceae in Slovakia. Mycoscience 52:268–270
Allescher A (1902) Fungi Imperfecti: Gefärbt-sporige Sphaerioideen. Rabenhorst’s Kryptogamen-Flora von Deutschland. Österreich und der Schweiz, 2nd edn. 1(7):65–128
Anderson F, Bianchinotti VA (1996) New species of Bartalinia Tassi (Deuteromycotina, Coelomycetes). Mycotaxon 60:191–200
Andrianova TV, Minter DW (2007) New species of Bartalinia and Septoriella from the Altai Mountains (Russia). Mycotaxon 101:297–313
Ariyawansa HA, Hawksworth DL, Hyde KD, Jones EBG, Maharachchikumbura SSN, Manamgoda DS, Thambugala KM, Udayanga D, Camporesi E, Daranagama A, Jayawardena R, Liu JK, McKenzie EHC, Phookamsak R, Senanayake IC, Shivas RG, Tian Q, Xu JC (2014) Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Divers 69:57–91
Arx JA, Müller E (1955) Über die Gattungen Selinia karst. und Seliniella nov. gen. und ihre phylogenetische Bedeutung. 4:116–125
Asgari B, Zare R (2011) A contribution to the taxonomy of the genus Coniocessia (Xylariales). Mycol Prog 10:189–206
Bahl J (2006) Molecular evolution of three morphologically similar families in the Xylariomycetidae (Apiosporaceae, Clypeosphaeriaceae, Hyponectriaceae). The University of Hong Kong (Pokfulam, Hong Kong), http://hdl.handle.net/10722/51007
Barber PA, Crous PW, Groenewald JZ, Pascoe IG, Keane P (2011) Reassessing Vermisporium (Amphisphaeriaceae), a genus of foliar pathogens of Eucalypts. Persoonia 27:90–118
Barr ME (1964) The genus Pseudomassaria in North America. Mycologia 56:841–862
Barr ME (1975) Pestalosphaeria, a new genus in the Amphisphaeriaceae. Mycologia 67:187–194
Barr ME (1976) Buergenerula and the PhysosporelIaceae. Mycologia 68:611–621
Barr ME (1989) Clypeosphaeria and the Clypeosphaeriaceae. Syst Ascomyc 8:1–8
Barr ME (1990) Prodromus to nonlichenized, pyrenomycetous members of class Hymenoascomycetes. Mycotaxon 39:43–184
Barr ME (1993) Redisposition of some taxa described by J. B. Ellis. Mycotaxon 46:45–76
Barr ME, Boise JR (1985) A revision of Exarmidium (Ascomycetes). Mycotaxon 23:233–240
Barr ME, Cannon PF (1994) Calosphaeriales, Clavicipitales, Coryneliales, Diaporthales, Diatrypales, Halosphaeriales, Hypocreales, Meliolales, Ophiostomatales, Phyllachorales, Sordariales, Trichosphaeriales, and Xylariales. In: Hawksworth DL (ed) Ascomycete systematics. Problems and perspectives in the nineties. Nato ASI Series. Series A: Life Sciences, vol 269. Plenum Press
Barr ME, Rogers JD, Ju YM (1993) Revisionary studies in the Calosphaeriaceae. Mycotaxon 48:529–535
Bhat DJ (2010) Fascinating microfungi (Hyphomycetes) of Western Ghats - India. Broadway Book Centre, Goa
Bitzer J, Læssøe T, Fournier J, Kummer V, Decock C, Tichy HV, Piepenbring M, Peršoh D, Stadler M (2008) Affinities of Phylacia and the daldinoid Xylariaceae, inferred from chemotypes of cultures and ribosomal DNA sequences. Mycol Res 112:251–270
Cannon PF (1995) Studies on fungi with isthmoid ascospores: the genus Vialaea, with the description of the new family Vialaeaceae. Mycol Res 99:367–373
Carmarán CC, Romero AI, Giussani LM (2006) An approach towards a new phylogenetic classification in Diatrypaceae. Fungal Divers 23:67–87
Cesati V, de Notaris G (1863) Schema di classificazione degli sferiacei italici aschigeri più o meno appartenenti al genere Sphaeria nell’antico significato attribuitoglda Persoon. Commentario Soc Crittogamia Ital 1:177–240
Chesters CGC, Greenhalgh GN (1964) Geniculosporium serpens gen. et sp. nov., the imperfect state of Hypoxylon serpens. Trans Br Mycol Soc 47:393–401
Chi PK, Jiang ZD, Zeng L (2002) Two new species of fungi on Bromeliaceae. Mycosystema 21:23–24
Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu JC, Liu XZ, Stadler M, Hyde KD (2014) The sooty moulds. Fungal Divers 66:1–36
Corda ACJ (1833) Deutschlands Flora, Abt. III. Die Pilze Deutschlands 3–13:65–96
Crous PW, Groenewald JZ (2013) A phylogenetic re-evaluation of Arthrinium. IMA Fungus 4:133–154
Crous PW, Giraldo A, Hawksworth DL, Robert V, Kirk PM, Guarro J (2014a) The genera of fungi: fixing the application of type species of generic names. IMA Fungus 5:141–160
Crous PW, Wingfield MJ, Schumacher RK, Summerell BA, Giraldo A, Gené J, Guarro J, Wanasinghe DN, Hyde KD, Camporesi E, Gareth Jones EB, Thambugala KM, Malysheva EF, Malysheva VF, Acharya K, Alvarez J, Alvarado P, Assefa A, Barnes CW, Bartlett JS, Blanchette RA, Burgess TI, Carlavilla JR, Coetzee MPA, Damm U, Decock CA, den Breeÿen A, de Vries B, Dutta AK, Holdom DG, Rooney-Latham S, Manjón JL, Marincowitz S, Mirabolfathy M, Moreno G, Nakashima C, Papizadeh M, Shahzadeh Fazeli SA, Amoozegar MA, Romberg MK, Shivas RG, Stalpers JA, Stielow B, Stukely MJC, Swart WJ, Tan YP, van der Bank M, Wood AR, Zhang Y, Groenewald JZ (2014b) Fungal planet description sheets: 281–319. Persoonia 33:212–289
Dai DQ, Bahkali AH, Li QR, Bhat DJ, Wijayawardene NN, Li WJ, Chukeatirote E, Zhao RL, Xu JC, Hyde KD (2014) Vamsapriya (Xylariaceae) re-described, with two new species and molecular sequence data. Cryptogam Mycol 35:339–357
Daranagama DA, Liu XZ, Chamung S, Stadler M, Hyde KD (2014) A multigene gene genealogy reveals the phylogenetic position of Rhopalostroma lekae. Phytotaxa 186:177–187
Daranagama DA, Camporesi E, Tian Q, Liu X, Chamyuang S, Stadler M, Hyde KD (2015) Anthostomella is polyphyletic comprising several genera in Xylariaceae. Fungal Divers. doi:10.1007/s13225-015-0329-6
Dennis R (1957) Further notes on tropical American Xylariaceae. Kew Bull 12:297–332
Dennis R (1961) Xylarioideae and thamnomycetoideae of Congo. Bull Jard Bot Brux 31:109–154
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
Ellis MB (1971) Dematiaceous hyphomycetes. Kew: Commonwealth Mycological Institute
Ellis MB (1976) More dematiaceous hyphomycetes. Kew: Commonwealth Mycological Institute, Kew
Eriksson OE (2009) The non-lichenized ascomycetes of Sweden. Department of Ecology and Environmental Science, Umea University, Umea, pp 1–461. ISBN 978-91-7264-898-2
Eriksson O, Hawksworth DL (1986) An alphabetical list of the generic names of ascomycetes. CAB International Mycological Institute
Eriksson OE, Hawksworth DL (1987) Notes on ascomycete systematics. Nos 225–463. Syst Ascomycetum 6:111–165
Eriksson OE, Winka K (1997) Supraordinal taxa of Ascomycota. Myconet 1(1):1–16
Farr DF, Rossman AY (2015) Fungal databases, systematic mycology and microbiology laboratory, ARS, USDA
Fries EM (1849) Summa vegetabilium scandinaviae sectio posterior 259–572
García D, Stchigel AM, Cano J, Calduch M, Hawksworth DL, Guarro J (2006) Molecular phylogeny of Coniochaetales. Mycol Res 110:1271–1289
Glawe DA, Rogers JD (1982) Observations on the anamorphs of six species of Eutypa and Eutypella. Mycotaxon 14:334–346
Guba EF (1961) Monograph of Monochaetia and Pestalotia. Harvard University Press, Cambridge
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Hatakeyama S, Harada Y (2004) A new species of Discostroma and its anamorph Seimatosporium with two morphological types of conidia, isolated from the stems of Paeonia suffruticosa. Mycoscience 45:106–111
Hawksworth DL, Kirk PM, Sutton BC, Pegler DN (1995) Ainsworth & Bisby’s dictionary of the fungi, 8th edn. CABI International, Wallingford
Hilber R, Hilber O (2002) The genus Lasiosphaeria and allied taxa. Germany: Publ. By the authors. 9 p., 7 pl
Hodges CS, Barr ME (1971) A new species of Pseudomassaria and its Beltraniella conidial state. Mycologia 63:562–566
Hsieh HM, Ju YM, Rogers JD (2005) Molecular phylogeny of Hypoxylon and closely related genera. Mycologia 97:844–865
Hsieh HM, Lin CR, Fang MJ, Rogers JD, Fournier J, Lechat C, Ju YM (2010) Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Mol Phylogenet Evol 54:957–969
Huhndorf SM (1992) Systematics of Leptosphaeria species found on the Rosaceae. Illinois Natural History Survey, Champaign Ill Biol. Notes No. 34:480–533
Huhndorf SM, Miller AN, Fernandez FA (2004) Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefine. Mycologia 96:368–387
Hyde KD, Kang JC, Kong RYC (1996) Fungi from palms. XXX. Notes on Amphisphaeria species described from palms and a description of A. umbrina. Nova Hedwigia 63:101–108
Hyde KD, Fröhlich J, Taylor JE (1998) Fungi from palms. XXXVI. Reflections on unitunicate ascomycetes with apiospores. Sydowia 50:21–80
Hyde KD, McKenzie EHC, KoKo TW (2011) Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2010. Mycosphere 2:1–88
Index Fungorum (2015) http://www.indexfungorum.org/Names/Names.asp
Jaczewski ALA (1894) Bull. Herb. Boissier 2:1–663
Jaklitsch WM, Voglmayr H (2012) Phylogenetic relationships of five genera of Xylariales and Rosasphaeria gen. nov. (Hypocreales). Fungal Divers 52:75–98
Jaklitsch WM, Fournier J, Rogers JD, Voglmayr H (2014) Phylogenetic and taxonomic revision of Lopadostoma. Persoonia 32:52–82
Jeewon R (2001) Pestalotiopsis taxonomy: molecular phylogenetics, species nomenclature and teleomorph relationships (Doctoral dissertation, The University of Hong Kong (Pokfulam, Hong Kong)
Jeewon R, Liew ECY, Hyde KD (2002) Phylogenetic relationships of Pestalotiopsis and allied genera inferred from ribosomal DNA sequences and morphological characters. Mol Phylogenet Evol 25:378–392
Jeewon R, Cai L, Liew ECY, Zhang KQ, Hyde KD (2003a) Dyrithiopsis lakefuxianensis gen. et sp. nov. from Fuxian Lake, Yunnan, China, and notes on the taxonomic confusion surrounding Dyrithium. Mycologia 95:911–920
Jeewon R, Liew ECY, Simpson JA, Hodgkiss IJ, Hyde KD (2003b) Phylogenetic significance of morphological characters in the taxonomy of Pestalotiopsis species. Mol Phylogenet Evol 27:372–383
Ju YM, Rogers JD (1996) A revision of the genus Hypoxylon. Mycologia Memoir No. 20. St. Paul (MN): APS Press
Ju YM, San Martín F, Rogers JD (1993) Three xylariaceous fungi with scolecosporous conidia. Mycotaxon 47:219–228
Kang JC, Kong RYC, Hyde KD (1998) Studies on the Amphisphaeriales 1. Amphisphaeriaceae (sensu stricto) and its phylogenetic relationships inferred from 5.8S rDNA and ITS2 sequences. Fungal Divers 1:147–157
Kang JC, Hyde KD, Kong RYC (1999a) Studies on Amphisphaeriales l: the Clypeosphaeriaceae. Mycoscience 40:151–164
Kang JC, Hyde KD, Kong RYC (1999b) Studies on Amphisphaeriales: the Amphisphaeriaceae (sensu stricto). Mycol Res 103:53–64
Kirk PM, Cannon PF, David JC, Stalpers JA (2001) Ainsworth & Bisby’s dictionary of the fungi, 9th edn. CAB International, Oxon
Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby’s dictionary of the fungi, 10th edn. CABI, Wallingford
Kohlmeyer J, Kohlmeyer B (1993) Atrotorquata and Loratospora: new ascomycete genera on Juncus roemerianus. Syst Ascomycetum 12:7–22
Krug JC (1978) The genus Cainia and a new family, Cainiaceae. Sydowia 30:122–133
Kuhnert E, Fournier J, Peršoh D, Luangsa-ard JJD, Stadler M (2013) New Hypoxylon species from martinique and new evidence on the molecular phylogeny of Hypoxylon based on ITS rDNA and β-tubulin data. Fungal Divers 64:181–203
Kumar S, Stecher G, Peterson D (2012) MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis. Bioinformatics 28:2685–2686
Læssøe T, Rogers J, Whalley A (1989) Camillea, Jongiella and light-spored species of Hypoxylon. Mycol Res 93:121–155
Lee SB, Taylor JW (1990) Isolation of DNA from fungal mycelia and single spores. Chapter 34. In: Innis M, Gelfand D, Sninsky J, White T (eds) PCR protocols: a guide to methods and applications. Academic, Orlando
Lee S, Crous PW, Wingfield MJ (2006) Pestalotioid fungi from Restionaceae in the Cape Floral Kingdom. Stud Mycol 55:175–187
Li QR, Kang JC, Hyde KD (2015b) A multiple gene genealogy reveals the phylogenetic placement of Iodosphaeria tongrenensis sp. nov. in Iodosphaeriaceae (Xylariales). Phytotaxa (in press)
Li WJ, Maharachchikumbura SSN, Li QR, Bhat DJ, Camporesi E, Tian Q, Senanayake IC, Dai DQ, Chomnunti P, Hyde KD (2015b) Epitypification of Broomella vitalbae and introduction of a novel species of Hyalotiella cryptogam. Mycology 36(1):93–108
Libert MA (1837) Précis des observations sur la famille des hypoxylons. Ann Sci Nat Bot 2(7):121–125
Liu JK, Hyde KD, Gareth EBG, Ariyawansa HA, Bhat DJ, Boonmee S, Maharachchikumbura S, McKenzie EHC, Phookamsak R, Phukhamsakda R, Abdel-Wahab MA, Buyck B, Chen J, Chethana KWT, Singtripop C, Dai DQ, Dai YC, Daranagama DA, Dissanayake AJ, Doliom M, Fan LX, Goonasekara D, Hirayama K, Hongsanan S, Jayasiri SC, Jayawardena RS, Karunarathna SC, Li WJ, Mapook A, Norphanphoun C, Pang KL, Perera RH, Peršoh D, Pinruan U, Senanayake IC, Somrithipol S, Satinee S, Tanaka K, Thambugala KM, Tian Q, Tibpromma S, Udayanga D, Wijayawardene NN, Wanasinghe D, Abdel-Aziz FA, Adamčík S, Bahkali AH, Boonyuen N, Bulgakov T, Callac P, Chomnunti P, Greiner K, Hashimoto A, Hofstetter V, Kang JC, Li XH, Liu ZY, Matumura M, Mortimer PE, Rambold R, Randrianjohany E, Sato G, Indrasutdhi VS, Verbeken A, Brackel W, Wang Y, Wen TC, Xu JC, Yan JY, Zhao RL, Camporesi E (2015) Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species. Fungal Divers 72:1–197
Lu BS, Hyde KD (2000) A world monograph of Anthostomella. Fungal Divers Res 4:1–376
Lumbsch TH, Huhndorf SM (2007) Outline of ascomycota – 2007. Myconet 13:1–58
Lumbsch HT, Huhndorf SM (2010) Myconet volume 14. Part one. Outline of ascomycota – 2009. Part two. Notes on Ascomycete systematics. Nos. 4751–5113. Fieldiana Life Earth Sci 1:1–64
Maharachchikumbura SSN, Guo LD, Chukeatirote E, Bahkali AH, Hyde KD (2011) Pestalotiopsis - morphology, phylogeny, biochemistry and diversity. Fungal Divers 50:167–187
Maharachchikumbura SSN, Guo LD, Chukeatirote E, McKenzie EHC, Hyde KD (2013) A destructive new disease of Syzygium samarangense in Thailand caused by the new species Pestalotiopsis samarangensis. Trop Plant Pathol 38:227–235
Maharachchikumbura SSN, Hyde KD, Groenewald JZ, Xu J, Crous PW (2014) Pestalotiopsis revisited. Stud Mycol 79:121–186
Maharachchikumbura SS, Hyde KD, Jones EBG, McKenzie EHC, Huang SK, Abdel-Wahab MA, Daranagama DA, Dayarathne M, D’souza MJ, Goonasekara ID, Hongsanan S, Jayawardena RS, Kirk PM, Konta S, Liu JK, Liu ZY, Norphanphoun C, Pang KL, Perera RH, Senanayake IC, Shang Q, Shenoy BD, Xiao YP, Bahkali AH, Kang JC, Somrothipol S, Suetrong S, Wen TC, Xu JC (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Divers 72:199–301
Marincowitz S, Gryzenhout M, Wingfield MJ (2010) New and rare coelomycetes with appendage-bearing conidia from Pondoland, South Africa. Mycotaxon 111:309–322
McTaggart AR, Grice KR, Shivas RG (2013) First report of Vialaea minutella in Australia, its association with mango branch dieback and systematic placement of Vialaea in the Xylariales. Australas Plant Dis Notes 8:63–66
Miller JH (1961) A monograph of the world species of Hypoxylon. Univ. Georgia Press, Athens
Morgan-Jones G, Nag Raj TR, Kendrick WB (1972) Genera coelomycetarum V. Alpakesa and Bartalinia. Can J Bot 50:877–882
Muller E, Corbaz R (1956) Kulturversuche mit ascomyceten III. Sydowia 10:181–188
Müller E, von Arx JA (1962) Die Gattungen der didymosporen Pyrenomyceten. Beitr Kryptogamenflora Schweiz 11(2):1–922
Nag Raj TR (1993) Coelomycetous anamorphs with appendage-bearing conidia. Mycologue Publications, Waterloo
Nag Raj T, Kendrick B (1985) Ellurema gen. nov., with notes on Lepteutypa cisticola and Seiridium canariense. Sydowia 38:178–193
Nitschke TRJ (1869) Grundlage eines Systems der Pyrenomyceten. Verhandlungen des Naturhistorischen Vereins der Preussischen Rheinlande, Westfalens und des Regierungsbezirks Osnabrück 26 2: 70–77
Norphanphoun C, Maharachchikumbura SSN, Daranagama A, Bulgakov TS, Bhat DJ, Bahkali AH, Hyde KD (2015) Towards a backbone tree for Seimatosporium, with S. physocarpi sp. nov. Mycosphere 6(3):385–400
Okane I, Nakagiri A, Ito T (1996) Discostroma tricellulare, a new endophytic ascomycete with a Seimatosporium anamorph isolated from Rhododendron. Can J Bot 74:1338–1344
Papendorf MC, Du-Toit JW (1967) Melanophoma: a new genus of the Sphaeropsidales. Trans Br Mycol Soc 50:503–506
Paulus BC, Gadek PA, Hyde KD (2006) Discostroma ficicola sp. nov. (Amphisphaeriaceae) and a key to species of Discostroma. Sydowia 58:76–90
Petrak F (1923) Mykologische notizen. VI 202.Uber Sphaeria apiculata curr. Ann Mycol 21:182–335
Petrini LE (2013) Rosellinia - a world monograph. Bibl Mycol 205: 410pp
Petrini LE, Müller E (1986) Haupt und Nebenfruchtformen europäischer Hypoxylon Arten (Xylariaceae, Sphaeriales) und verwandter Pilze. Mycol Helv 1:501–627
Pirozynski KA (1974) Xenotypa Petrak and Graphostroma gen. nov., segregates from Diatrypaceae. Can J Bot 52:2129–2135
Preuss (1849) Klotzschii herbarium vivum mycologicum, Editio novo. Century: no. 1272
Rolshausen PE, Trouillas F, Gubler WD (2004) Identification of Eutypa lata by PCR-RFLP. Plant Dis 88:925–929
Ronquist F, Teslenko M, Vander MP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539–542
Rossman AY, Samuels GJ, Rogerson CT, Lowen R (1999) Genera of Bionectriaceae, Hyponectriaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248
Saccardo PA (1883) Sylloge pyrenomycetum. Vol. II. Syll. Fung. 2:1–813
Saccardo PA (1896) Notes mycologiques (W serie) (I). Bull Soc Mycol Fr 12:64–81
Samuels GJ, McKenzie EHC, Buchanan DE (1981) Ascomycetes of New Zealand 3. Two new species of Apiospora and their Arthrinium anamorphs on bamboo. N Z J Bot 19:137–149
Samuels GJ, Müller E, Petrini O (1987) Studies in the Amphisphaeriaceae (sensu lato). 3. New species of Monographella and Pestalosphaeria, and two new genera. Mycotaxon 28:473–499
Schrantz JP (1960) Recherches sur les pyrénomycètes de l’ordre des diatrypales, sensu M. Chadefaud, 1957. Bull Soc Mycol Fr 76:305–407
Senanayake IC, Maharachchikumbura SSN, Mortimer PE, Bhat JD, Hyde KD (2014) Vialaeaceae; introducing a novel species Vialaea mangiferae. Sydowia 66:203–216
Sharma RG, Kulkarni G, Sonawane MS (2014) A new endophytic species of Arthrinium (Apiosporaceae) from Jatropha podagrica. Mycoscience 55:118–123
Shoemaker RA, Müller E (1963) Generic correlations and concepts: Broomella and Pestalotia. Can J Bot 41:1235–1243
Shoemaker RA, Muller E (1964) Generic correlations and concepts: Clathridium (=Griphosphaeria) and Seimatosporium (= Sporocadus). Can J Bot 42:403–407
Shoemaker RA, Babcock CE, Müller E (1989) A new Broomella with a Truncatella anamorph on Clematis. Sydowia 41:308–313
Shoemaker RA, Hambleton S, Liu M (2013) Vialaea insculpta revisited. AM Fungi 8(10):1–13
Sivanesan A, Shivas RG (2002) New species from each of the pyrenomycete genera Hyponectria, Physalospora and Trichosphaeria from Queensland, Australia. Fungal Divers 9:169–174
Smith GJD, Liew ECY, Hyde KD (2003) The Xylariales: a monophyletic order containing 7 families. Fungal Divers 13:185–218
Stadler M, Wollweber H, Mühllbauer A, Henkel T, Asakawa Y, Hashimoto T, Rogers JD, Ju YM, Wetzstein HG, Tichy HV (2001) Secondary metabolite profiles, genetic fingerprints and taxonomy of Daldinia and allies. Mycotaxon 77:379–429
Stadler M, Fournier J, Gardt S, Peršoh D (2010a) The phylogenetic position of Rhopalostroma as inferred from a polythetic approach. Persoonia 25:11–21
Stadler M, Fournier J, Læssøe T, Decock C, Peršoh D, Rambold G (2010b) Ruwenzoria, a new genus of the Xylariaceae from Central Africa. Mycol Prog 9:169–179
Stadler M, Fournier J, Læssøe T, Chlebicki A, Lechat C, Flessa F, Rambold G, Peršoh D (2010c) Chemotaxonomic and phylogenetic studies of Thamnomyces (Xylariaceae). Mycoscience 51:189–207
Stadler M, Kuhnert E, Peršoh D, Fournier J (2013) The Xylariaceae as model example for a unified nomenclature following the “One fungus-one name” (1F1N) concept. Mycol Int J Fungal Biol 4:5–21
Stadler M, Læssøe T, Fournier J, Decock C, Schmieschek B, Tichy H, Peršoh D (2014) A polyphasic taxonomy of Daldinia (Xylariaceae). Stud Mycol 77:1–143
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21):2688–2690
Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML web-servers. Syst Biol 75(5):758–771
Steyaert RL (1949) Contribution à l’étude monographique de Pestalotia De Not. et Monochaetia Sacc. (Truncatella gen. nov. et Pestalotiopsis gen. nov.). Bull Jard Bot Brux 19:285–354
Summerell BA, Groenewald JZ, Carnegie A, Summerbell RC, Crous PW (2006) Eucalyptus microfungi known from culture. 2. Alysidiella, Fusculina and Phlogicylindrium genera nova, with notes on some other poorly known taxa. Fungal Divers 23:323–350
Sutton BC (1963) Coelomycetes. II. Neobarclaya, Mycohypallage, Bleptosporium and Cryptostictis. MYC Pap 88:1–50
Sutton BC (1980) The coelomycetes. Fungi Imperfecti with Pycnidia Acervuli and Stromata. Commonwealth Mycological Insitute, Kew, pp 1–696
Swofford DL (2003) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland
Sydow H, Mitter JH (1935) Fungi Indici - II. Ann Mycol 33:46–71
Tanaka K, Endo M, Hirayama K, Okane I, Hosoya T, Sato T (2011) Phylogeny of Discosia and Seimatosporium, and introduction of Adisciso and Immersidiscosia genera nova. Persoonia 26:85–98
Tang AMC, Jeewon R, Hyde KD (2009) A re-evaluation of the evolutionary relationships within the Xylariaceae based on ribosomal and protein-coding gene sequences. Fungal Divers 34:127–155
Tassi F (1900) Bartalinia Fl. Tassi. Nuovo genere di Sphaeropsidaceae. Boll Laboratorio Bot R Univ Siena 3:3–5
Theissen F (1910) Fungi riograndenses. Beih Bot Zentralb 27:384–411
Theissen F, Sydow H (1915) Die Dothideales. Kritisch-systematische Originaluntersuchungen. Ann Mycol 13:147–746
Trouillas FP, Úrbez-Torres JR, Gubler WD (2010) Diversity of diatrypaceous fungi associated with grapevine canker diseases in California. Mycologia 102:319–336
Trouillas FP, Pitt WM, Sosnowski MR, Huang R, Peduto F, Loschiavo A, Savocchia S, Scott ES, Gubler WD (2011) Taxonomy and DNA phylogeny of Diatrypaceae associated with Vitis vinifera and other woody plants in Australia. Fungal Divers 49:203–223
Tulasne L, Tulasne C (1863) Selecta fungorum Carpologia. II. (English translation of W. B. Grove). Oxford University Press
Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172(8):4238–4246
Von Arx JA (1981) The genera of fungi sporulating in pure culture, 3rd edn. Stechert-Hafner, New York, p 288
Wang YZ, Hyde KD (1999) Hyponectria buxi with notes on the Hyponectriaceae. Fungal Divers 3:159–172
Wang YZ, Aptroot A, Hyde KD (2004) Revision of the genus Amphisphaeria. Hong Kong SAR, China. Fungal Divers Res Ser 13:1–168
Whalley AJS, Edwards RL (1995) Secondary metabolites and systematic arrangement within the Xylariaceae. Can J Bot 73(1):S802–S810
White T, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protoc Guide Methods Appl 18:315–322
Wijayawardene DNN, McKenzie EHC, Hyde KD (2012) Towards incorporating anamorphic fungi in a natural classification checklist and notes for 2011. Mycosphere 3:157–228
Winter G (1884–1886; ‘1886’) Ascomyceten: Gymnoasceen und Pyrenomyceten. Rabenhorst’s Kryptogamen-Flora von Deutschland, Oesterreich und der Schweiz 2 1(2):1–928
Xi PG, Chi PK, Jiang ZD (2000) Three new species of coelomycetes. Mycosystema 19:466–469
Yuan ZQ, Zhao ZY (1992) A new species of Broomella and its new anamorph on Clematis from China. Sydowia 44:90–99
Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Sung GH (2006) An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98:1076–1087
Acknowledgments
S. Maharachchikumbura thanks the Featured microbial resources and diversity investigation in Southwest Karst area (2014FY120100) for funding. The authors extend their sincere appreciations to the Deanship of Scientific Research at King Saud University for its funding this Prolific Research Group (PRG-1436-09). Kevin D. Hyde thanks the Chinese Academy of Sciences, project number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany. Y.P. Xiao and T.C. Wen are grateful to The National Natural Science Foundation of China (No.31460012 & No.31200016). Shi-Ke Huang and J.C. Kang are grateful to the Agricultural Science and Technology Foundation of Guizhou Province Nos. NY [2013]3042), the International Collaboration Plan of Guizhou Province (No. G [2012]7006) and the Innovation Team Construction for Science And Technology of Guizhou Province (No. [2012]4007) from the Science and Technology Department of Guizhou Province, China.
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Senanayake, I.C., Maharachchikumbura, S.S.N., Hyde, K.D. et al. Towards unraveling relationships in Xylariomycetidae (Sordariomycetes). Fungal Diversity 73, 73–144 (2015). https://doi.org/10.1007/s13225-015-0340-y
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DOI: https://doi.org/10.1007/s13225-015-0340-y
Keywords
- Amphisphaeriales
- Apiosporaceae
- Bartaliniaceae
- Cainiaceae
- Ciferriascosea
- Clypeosphaeriaceae
- Coniocessiaceae
- Discosiaceae
- Diatrypaceae
- Hyponectriaceae
- Hypoxyloideae
- Iodosphaeriaceae
- Lopadostomaceae
- Melogrammataceae
- Pestalotiopsidaceae
- Phlogicylindriaceae
- Pseudomassariaceae
- Vialaeaceae
- Xylariaceae
- Xylarioideae