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Taxonomy and phylogeny of dematiaceous coelomycetes

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Abstract

Coelomycetous fungi are an artificial taxonomic group which produce conidia inside a cavity i.e. conidiomata. Coelomycetes comprise about, 1000 genera and 7000 species, which can be endophytic, pathogenic or saprobic. Traditional classification of coelomycetes was previously based on morphology, such as the shape of conidiomata and mode of conidiogenesis, while it was treated as a distinct group i.e. Deuteromycotina. Sequence based taxonomic studies has been used to accommodate asexual fungi in a natural classification system, resolve generic boundaries of polyphyletic genera and species complexes, as well as establish asexual-sexual links. Nevertheless, most of genera lack sequence data, thus, morphology based identification is still important when introducing new genera or species. In this paper we illustrate, describe, and provide taxonomic notes for 235 dematiaceous coelomycetous genera, including five new genera viz. Apiculospora, Didymellocamarosporium, Melanocamarosporium, Melnikia and Paulkirkia. Phylogenetic analyses of combined sequence data are provided to show placements of dematiaceous coelomycetes in Dothideomycetes, Leotiomycetes and Sordariomycetes. One-hundred and fifty-two (65 %) of genera have sequence data, thus, their taxonomic placement in a natural classification system, is listed as an outline. However, 83 genera still lack sequence data, hence, they are treated as Ascomycota, genera incertae sedis. In addition, separate analyses are provided where better taxonomic resolution is needed.

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Acknowledgments

We acknowledge the International Highly Cited Research Group (IHCRRGP# 14–205), Deanship of Scientific Research, King Saud University, Riyadh, Kingdom of Saudi Arabia. Nalin N. Wijayawardene, Dhanushka N. Wanasinghe, Dong Qin Dai, Ishani D. Goonasekara and Wen Jing Li thank the Mushroom Research Foundation (MRF), Chiang Rai Province, Thailand for providing Postgraduate Scholarships. Nalin N. Wijayawardene would like to thank P.M. Kirk, V.A. Mel’nik, Buddhika Dilhan, Dmitrii Shabunin, Manjari Dissanayake and Lesley Ragab for being helpful to gather old literature. Kevin D. Hyde is grateful to the Chinese Academy of Sciences, project number 2013T2S0030, for the award of Visiting Professorship for Senior International Scientists at Kunming Institute of Botany, research grant from the Biodiversity Research and Training Program (BRT R253012) and The Thailand Research Fund (BRG 5280002). Alan J.L. Phillips thanks Mae Fah Luang University for a Visiting Professorship during the tenure of which this paper was finalised. Yong Wang would like to thank The International Scientific Cooperated Project of Guizhou Province (No[2013] 7004). Rungtiwa Phookamsak thanks the Royal Golden Jubilee Ph.D. Program (PHD/0090/2551). Erio Camporesi is grateful to Giancarlo Lombardi, Sergio Montanari and Gigi Stagioni for their help in identifying host plants of fresh collections. K. Tanaka would like to thank the Japan Society for the Promotion of Science (JSPS, 25440199 and 26291084) and Hirosaki University Grant for Exploratory Research by Young Scientists and Newly–appointed Scientists for financial support. Yong Wang thanks Yong-Cheng Long, Prof. De-Gang Zhao and Prof. Zhuo Chen for their help in sequencing and suggestions in molecular experiments. We would like to thank MFU grant No. 56101020032 for funding to study the taxonomy and phylogeny of Dothideomycetes. The authors also wish to acknowledge Saranyaphat Boonmee, Chayanard Phukhamsakda and Qing Tian. Ishani D. Goonasekara wishes to acknowledge Liu Ende, Assistant Curator, Herbarium, Kunming Institute of Botany, Chinese Academy of Sciences (KUN), Kunming, China, Wu HaiXia and staff of International Fungal Research and Development Centre (IFRD), Key Laboratory of Resource Insect Cultivation & Utilization State Forestry Administration, The Research Institute of Resource Insects, Chinese Academy of Forestry Kunming 650224, PR China and Danushka S. Tennakoon for their assistance with herbarium material.

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Authors and Affiliations

  1. Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang, 550025, People’s Republic of China

    Nalin N. Wijayawardene & Yong Wang

  2. School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand

    Nalin N. Wijayawardene, Kevin D. Hyde, Dhanushka N. Wanasinghe, Ishani D. Goonasekara, Wen Jing Li, Narumon Tangthirasunun, Rungtiwa Phookamsak, Dong-Qin Dai & Asha J. Dissanayake

  3. Center of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand

    Nalin N. Wijayawardene, Kevin D. Hyde, Dhanushka N. Wanasinghe, Ishani D. Goonasekara, Wen Jing Li, Narumon Tangthirasunun, Rungtiwa Phookamsak, Dong-Qin Dai & Asha J. Dissanayake

  4. Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, 650201, People’s Republic of China

    Kevin D. Hyde, Dhanushka N. Wanasinghe, Ishani D. Goonasekara, Wen Jing Li, Rungtiwa Phookamsak & Dong-Qin Dai

  5. World Agroforestry Centre, East and Central Asia, 132 Lanhei Road, Kunming, 650201, Yunnan, People’s Republic of China

    Kevin D. Hyde, Dhanushka N. Wanasinghe, Ishani D. Goonasekara, Wen Jing Li, Rungtiwa Phookamsak & Dong-Qin Dai

  6. Microorganisms Bank, Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture and Research (ACECR), Tehran, Iran

    Moslem Papizadeh

  7. A.M.B. Gruppo Micologico Forlivese, Antonio Cicognani, Via Roma 18, Forlì, Italy

    Erio Camporesi

  8. A.M.B. Circolo Micologico, Giovanni Carini, C.P. 314, Brescia, Italy

    Erio Camporesi

  9. Società per gli Studi Naturalistici della Romagna, C.P. 144, Bagnacavallo, RA, Italy

    Erio Camporesi

  10. No. 128/1-J, Azad Housing Society, Curca, P.O. Goa Velha, 403108, India

    D. Jayarama Bhat

  11. Department of Botany, Goa University, Goa, 403 206, India

    D. Jayarama Bhat

  12. Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, New Zealand

    Eric H. C. McKenzie

  13. Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), University of Lisbon, Campo Grande, 1749-016, Lisbon, Portugal

    Alan J. L. Phillips

  14. Musée national d’histoire naturelle, 25 rue Munster, L-2160, Luxembourg, Luxembourg

    Paul Diederich

  15. Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan

    Kazuaki Tanaka, Akira Hashimoto & Misato Matsumura

  16. Laboratoire Interdisciplinaire des Energies de Demain (LIED), Université Paris Diderot, 5 rue Thomas-Mann, Paris, 75013, France

    Narumon Tangthirasunun

  17. Guizhou Key Laboratory Agro-Bioengineering, Guizhou University, Guiyang, Guizhou, 550025, People’s Republic of China

    Yong Wang

  18. Center for Research and Development of Fine Chemicals of Guizhou University, Guiyang, 550025, People’s Republic of China

    Yong Wang

  19. Scientific Affiliate, Integrative Research Center, Science & Education, The Field Museum, Chicago, IL, USA

    Gothamie Weerakoon

  20. Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province, 550006, People’s Republic of China

    Sajeewa S. N. Maharachchikumbura

  21. College of Science, Botany and Microbiology Department, King Saud University, Riyadh, 1145, Saudi Arabia

    Ali H. Bahkali

  22. Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, People’s Republic of China

    Asha J. Dissanayake

  23. The United Graduate School of Agricultural Sciences, Iwate University, 18-8 Ueda 3 chome, Morioka, 020-8550, Japan

    Kazuaki Tanaka, Akira Hashimoto & Misato Matsumura

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  1. Nalin N. Wijayawardene
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Correspondence to Yong Wang.

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Wijayawardene, N.N., Hyde, K.D., Wanasinghe, D.N. et al. Taxonomy and phylogeny of dematiaceous coelomycetes. Fungal Diversity 77, 1–316 (2016). https://doi.org/10.1007/s13225-016-0360-2

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