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A novel species of Diaporthe causing leaf spot in Pachira glabra

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Abstract

Pachira glabra (Malvaceae) occurs naturally in Brazil’s Atlantic Forest and is used to recover degraded areas of permanent preservation. Symptoms of leaf spot caused by Diaporthe spp. have been observed in P. glabra saplings in a Brazilian forest nursery. The aim of this study was to identify the fungal species employing morphological characteristics, pathogenicity tests, and DNA sequence comparisons for the internal transcribed spacer region (ITS), β-tubulin (TUB), translation elongation factor 1-α (TEF1), and calmodulin (CAL) gene regions. A novel species was identified and described, named here as Diaporthe pachirae. Furthermore, this is the first report of a species belonging to Diaporthe on P. glabra in Brazil. The current study revealed that documentation of new fungi is a relevant forerunner to any research with natural forests.

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References

  • Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553–556

    Article  CAS  Google Scholar 

  • Crous PW, Wingfield MJ, Schumacher RK, Summerell BA, Giraldo A, Gené J, Guarro J, Wanasinghe DN, Hyde KD, Camporesi E, Gareth Jones EB, Thambugala KM, Malysheva EF, Malysheva VF, Acharya K, Álvarez J, Alvarado P, Assefa A, Barnes CW, Bartlett JS, Blanchette RA, Burgess TI, Carlavilla JR, Coetzee MPA, Damm U, Decock CA, den Breeÿen A, de Vries B, Dutta AK, Holdom DG, Rooney-Latham S, Manjón JL, Marincowitz S, Mirabolfathy M, Moreno G, Nakashima C, Papizadeh M, Shahzadeh Fazeli SA, Amoozegar MA, Romberg MK, Shivas RG, Stalpers JA, Stielow B, Stukely MJC, Swart WJ, Tan YP, van der Bank M, Wood AR, Zhang Y, Groenewald JZ (2014) Fungal Planet description sheets: 281–319. Persoonia 33:212–289

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Diogo ELF, Santos JM, Phillips AJL (2010) Phylogeny, morphology and pathogenicity of Diaporthe and Phomopsis species on almond in Portugal. Fungal Diversity 44:107–115

    Article  Google Scholar 

  • Dissanayake AJ, Camporesi E, Hyde KD, Wei Z, Yan JY, Li XH (2017) Molecular phylogenetic analysis reveals seven new Diaporthe species from Italy. Mycosphere 8:853–877

    Article  Google Scholar 

  • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fan X, Hyde KD, Udayanga D, Wu X, Tian C (2015) Diaporthe rostrata, a novel ascomycete from Juglans mandshurica associated with walnut dieback. Mycologycal Progress 14:82

    Article  Google Scholar 

  • Farr DF, Rossman AY (2017) Fungal Databases, U.S. National Fungus Collections, ARS, USDA. Available at: <https://nt.ars-grin.gov/fungaldatabases/>. Accessed in: September of 2017

  • Figueiredo MB (1967) Aplicação do método de Castellani para conservação de fungos fitopatogênicos. Revista da Sociedade Brasileira de Fitopatologia 1:79–81

    Google Scholar 

  • Garcia-Reyne A, López-Medrano F, Morales JM, Garcia-Esteban C, Martin I, Erana I, Meije Y, Lalueza A, Alastruey-Izquierdo A, Rodriguez-Tudela JL, Aguado JM (2011) Cutaneous infection by Phomopsis longicolla in a renal transplant recipient from Guinea: first report of human infection by this fungus. Transplant Infectious Disease 13:204–207

    Article  CAS  PubMed  Google Scholar 

  • Glass NL, Donaldson G (1995) Development of primer sets designed for use with PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61:1323–1330

    CAS  PubMed  PubMed Central  Google Scholar 

  • Gomes RR, Glienke C, Videira SIR, Lombard L, Groenewald JZ, Crous PW (2013) Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi. Persoonia 31:1–41

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Groenewald JZ, Nakashima C, Nishikawa J, Shin HD, Park JH, Jama AN, Groenewald M, Braun U, Crous PW (2013) Species concepts in Cercospora: spotting the weeds among the roses. Studies in Mycology 75:115–170

    Article  CAS  PubMed  Google Scholar 

  • Hall T (2005) BioEdit v7.0.5. Available at: <http://www.mbio.ncsu.edu/BioEdit/page2.html>. Accessed in: April of 2017

  • Lorenzi H (1992) Árvores brasileiras: manual de identificação e cultivo de plantas arbóreas nativas do Brasil. Editora Plantarum, Nova Odessa, p 352

    Google Scholar 

  • Mendes MAS, Urben AF (2017) Fungos relatados em plantas no Brasil, Laboratório de Quarentena Vegetal. Embrapa Recursos Genéticos e Biotecnologia. Available at: <http://pragawall.cenargen.embrapa.br/aiqweb/michtml/micbanco01a.asp>. Accessed in: September of 2017

  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES science gateway for inference of large phylogenetic trees. Available at: <http://www.phylo.org/sub_sections/portal/sc2010_paper.pdf>. Accessed in: April of 2017

  • Mycobank (2017) Available at: <http://www.mycobank.org/Register.aspx>. Accessed in: April of 2017

  • Nitschke T (1870) Pyrenomycetes Germanici 2, 161–320. Eduard Trewendt, Breslau

    Google Scholar 

  • Pinho DB, Firmino AL, Ferreira-Junior WG, Pereira OL (2013) An efficient protocol for DNA extraction from Meliolales and the description of Meliola centellae sp. nov. Mycotaxon 122:333–345

    Article  Google Scholar 

  • Posada D, Buckley TR (2004) Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology 53:793–808

    Article  PubMed  Google Scholar 

  • Rambaut A (2009) FigTree 1.2.2. Available at: <http://tree.bio.ed.ac.uk/software/figtree/>. Accessed in: April of 2017

  • Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43:304–311

    Article  CAS  PubMed  Google Scholar 

  • Ronquist F, Heulsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574

    Article  CAS  PubMed  Google Scholar 

  • Rossman AY, Farr DF, Castlebury LA (2007) A review of the phylogeny and biology of the Diaporthales. Mycoscience 48:135–144

    Article  Google Scholar 

  • Rossman AY, Adams GC, Cannon PF, Castlebury LA, Crous PW, Gryzenhout M, Jaklitsch WM, Mejia LC, Stoykov D, Udayanga D, Voglmayr H (2015) Recommendations of generic names in Diaporthales competing for protection or use. IMA Fungus 6:145–154

    Article  PubMed  PubMed Central  Google Scholar 

  • Santos JM, Correia VG, Phillips AJL (2010) Primers for mating-type diagnosis in Diaporthe and Phomopsis: their use in teleomorph induction in vitro and biological species definition. Fungal Biology 114:255–270

    Article  CAS  PubMed  Google Scholar 

  • Santos L, Phillips AJL, Crous P, Alves A (2017) Diaporthe species on Rosaceae with descriptions of D. pyracanthae sp. nov. and D. malorum sp. nov. Mycosphere 8:485–511

    Article  Google Scholar 

  • Sebastianes FL, Lacava PT, Fávaro LC, Rodrigues MB, Araújo WL, Azevedo JL, Pizzirani-Kleiner AA (2012) Genetic transformation of Diaporthe phaseolorum, an endophytic fungus found in mangrove forests, mediated by Agrobacterium tumefaciens. Current Genetics 58:21–33

    Article  CAS  PubMed  Google Scholar 

  • Senanayake IC, Crous PW, Groenewald SSN, Maharachchikumbura SSN, Jeewon R, Philips AJL, Bhat JD, Perera RH, Li WJ, Norphanphoun C, Karunanathna SC, Camporesi E, Manawasighe IS, Al-Sadi AM, Hyde KD (2017) Families of Diaporthales base on morphological and phylogenetic evidence. Studies in Mycology 86:217–296

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA 6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30:2725–2729

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tan YP, Edwards J, Grice KRE, Shivas RG (2013) Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia. Fungal Diversity 61:251–260

    Article  Google Scholar 

  • Thompson SM, Tan YP, Young AJ, Neate SM, Aitken EAB, Shivas RG (2011) Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species. Persoonia 27:80–89

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Thompson SM, Tan YP, Shivas RG, Neate SM, Morin L, Bissett A, Aitken EAB (2015) Green and brown bridges between weeds and crops reveal novel Diaporthe species in Australia. Persoonia 35:39–49

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Udayanga D, Castlebury LA, Rossman AY, Chukeatirote E, Hyde KD (2015) The Diaporthe sojae species complex: phylogenetic re-assessment of pathogens associated with soybean, cucurbits and other field crops. Fungal Biology 119:383–407

    Article  PubMed  Google Scholar 

  • Uecker FA (1988) A world list of Phomopsis names with notes on nomenclature, morphology and biology. Mycologia Memoir 13:1–231

    Google Scholar 

  • Van Rensburg JCJ, Lamprecht SC, Groenewald JZ, Castlebury LA, Crous PW (2006) Characterization of Phomopsis spp. associated with die-back of rooibos (Aspalathus linearis) in South Africa. Studies in Mycology 55:65–74

    Article  PubMed  PubMed Central  Google Scholar 

  • White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications 18:315–322

    Google Scholar 

  • Zauza EAV, Alfenas AC, Mafia RG (2007) Esterilização, preparo de meios de cultura e fatores associados ao cultivo de fitopatógenos. In: Alfenas AC, Mafia RG, editores. Métodos em Fitopatologia. Viçosa: UFV, 23–51

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Acknowledgements

This study was funded by the Coordination for the Improvement of Higher Level Personnel (CAPES), the National Council of Technological and Scientific Development (CNPq) and the Minas Gerais State Agency for Research and Development (FAPEMIG).

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Correspondence to Gleiber Q. Furtado.

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Milagres, C.A., Belisário, R., Silva, M.A. et al. A novel species of Diaporthe causing leaf spot in Pachira glabra. Trop. plant pathol. 43, 460–467 (2018). https://doi.org/10.1007/s40858-018-0242-0

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  • DOI: https://doi.org/10.1007/s40858-018-0242-0

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