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Enhancing the production of cephalosporin C through modulating the autophagic process of Acremonium chrysogenum

Microbial Cell Factories volume 17, Article number: 175 (2018) Cite this article

Abstract

Background

Autophagy is used for degradation of cellular components and nutrient recycling. Atg8 is one of the core proteins in autophagy and used as a marker for autophagic detection. However, the autophagy of filamentous fungi is poorly understood compared with that of Saccharomyces cerevisiae. Our previous study revealed that disruption of the autophagy related gene Acatg1 significantly enhanced cephalosporin C yield through reducing degradation of cephalosporin biosynthetic proteins in Acremonium chrysogenum, suggesting that modulation of autophagic process is one promising way to increase antibiotic production in A. chrysogenum.

Results

In this study, a S. cerevisiae ATG8 homologue gene Acatg8 was identified from A. chrysogenum. Acatg8 could complement the ATG8 mutation in S. cerevisiae, indicating that Acatg8 is a functional homologue of ATG8. Microscope observation demonstrated the fluorescently labeled AcAtg8 was localized in the cytoplasm and autophagosome of A. chrysogenum, and the expression of Acatg8 was induced by nutrient starvation. Gene disruption and genetic complementation revealed that Acatg8 is essential for autophagosome formation. Disruption of Acatg8 significantly reduced fungal conidiation and delayed conidial germination. Localization of GFP-AcAtg8 implied that autophagy is involved in the early phase of conidial germination. Similar to Acatg1, disruption of Acatg8 remarkably enhanced cephalosporin C yield. The cephalosporin C biosynthetic enzymes (isopenicillin N synthase PcbC and isopenicillin N epimerase CefD2) and peroxisomes were accumulated in the Acatg8 disruption mutant (∆Acatg8), which might be the main reasons for the enhancement of cephalosporin C production. However, the biomass of ΔAcatg8 decreased drastically at the late stage of fermentation, suggesting that autophagy is critical for A. chrysogenum cell survival under nutrition deprived condition. Disruption of Acatg8 also resulted in accumulation of mitochondria, which might produce more reactive oxygen species (ROS) which promotes fungal death. However, the premature death is unfavorable for cephalosporin C production. To solve this problem, a plasmid containing Acatg8 under control of the xylose/xylan-inducible promoter was introduced into ∆Acatg8. Conidiation and growth of the recombinant strain restored to the wild-type level in the medium supplemented with xylose, while the cephalosporin C production maintained at a high level even prolonged fermentation.

Conclusions

Our results demonstrated inducible expression of Acatg8 and disruption of Acatg8 remarkably increased cephalosporin C production. This study provides a promising approach for yield improvement of cephalosporin C in A. chrysogenum.

Background

Macroautophagy (hereafter autophagy) is generally used for degradation of cellular components and nutrient recycling in eukaryotes [1, 2]. The degradation of cytoplasm components (such as cytosol, macromolecular complexes, and organelles) takes place in vacuole/lysosome of eukaryotes. Autophagy normally occurs at a low constitutive level, but it is up-regulated under nutrient starvation condition. Autophagy begins with the formation of a sequestering membrane termed phagophore, and the phagophore expands and forms a double-membrane-bound vesicle known as autophagosome. The autophagosomes enter the vacuoles through membrane fusing and form autophagic bodies in which autophagic cargoes are degraded. As one of the core proteins, the ubiquitin-like protein Atg8 is essential for autophagosome formation and highly conserved in eukaryotes. Besides, Atg8 is also used as a biological marker for autophagic detection [3, 4].

In mammals, autophagy is involved in carcinogenesis, neurodegenerative diseases and developmental processes [5, 6]. Autophagy has been extensively studied in Saccharomyces cerevisiae, where more than 40 genes are involved in this process. In S. cerevisiae, autophagy deficient mutants not only show a reduction of cell viability under starvation condition, but also display defect in sporulation [7]. Recently, autophagy of filamentous fungi has received more attention since it is involved in fungal survival, reproduction and pathogenicity [8]. In Magnaporthe grisea, deletion of the autophagy related genes results in reduction of conidiation and non-pathogenic phenotype [4]. In Fusarium graminearum, autophagy is important for lipid turnover, deoxynivalenol production and infection in plant [9]. In the cucumber anthracnose fungus Colletotrichum orbiculare, autophagy is required for host invasion [10]. In the well-established aging model Podospora anserine, autophagy is related with aging and life span as a longevity-assurance mechanism [11]. In Aspergillus oryzae, autophagy is required for the formation of aerial hyphae and conidia [12], and deficiency of autophagy enhances the production of bovine chymosin [13]. In Sordaria macrospora, autophagy is used to sustain high energy levels for mycelia growth and morphological differentiation [14]. In Penicillium chrysogenum, the atg1 deletion mutant showed onefold increase in penicillin production [15]. Thus, autophagy is extensively related with morphological differentiation and secondary metabolite productions in filamentous fungi.

Acremonium chrysogenum is well known for producing the pharmaceutically relevant β-lactam antibiotic cephalosporin C (CPC). The cephalosporin biosynthetic genes of A. chrysogenum are localized in two separated clusters [16]. The CPC biosynthetic pathway has been well studied and at least 6 biosynthetic genes (pcbAB, pcbC, cefD1, cefD2, cefEF and cefG) are essential for the CPC biosynthesis [17, 18]. Like most of secondary metabolites, cephalosporin C is produced at the anaphase of exponential growth and stationary phase [19, 20]. During this time, the nutrients are depleted and autophagy is induced. It is speculated that the CPC biosynthetic proteins including PcbAB, PcbC, CefD1 and CefD2 could be degraded through autophagic process. In fact, disruption of an autophagy-related serine/threonine kinase gene Acatg1 significantly enhanced CPC yield through retaining PcbC and increasing the transcriptional levels of related genes [21]. Acatg1 is essential for the formation of autophagosome under starvation in A. chrysogenum. Acatg11 is involved in the selective autophagy pathway as a basic scaffold for phagosome assembly. However, deficiency of Acatg11 did not increase CPC production [22]. The relationship between autophagy and protein degradation should be complicated. How exactly autophagy participates in these fungal processes remains unknown.

In the present study, a S. cerevisiae ATG8 homologue gene Acatg8 was identified from A. chrysogenum. Gene disruption and genetic complementation revealed that Acatg8 is essential for autophagosome formation and autophagic process. Disruption of Acatg8 significantly reduced conidiation and fungal viability especially at the late stage of fermentation, but remarkably enhanced cephalosporin C yield. Through induced expression of Acatg8, the autophagic process was modulated and cephalosporin C yield was remarkably increased in the case of maintaining fungal viability. This study provides a promising approach for increasing antibiotic yield through modulating autophagic process in A. chrysogenum.

Materials and methods

Strains, media, and growth conditions

Strains and plasmids used in this study were listed in Additional file 1: Table S1. For growth and conidiation of A. chrysogenum, TSA and LPE media were used respectively as described previously [22]. The modified MDFA medium was used for CPC production as described previously [23]. Czapek medium (per liter: 30.0 g sucrose, 3.0 g NaNO3, 0.5 g MgSO4·7H2O, 0.0125 g FeSO4·7H2O, 0.5 g KCl, 1.3 g K2HPO4·3H2O, 15.0 g agar), Czapek–N medium (Czapek medium without nitrogen source), Czapek–C medium (Czapek medium without carbon source) and WA medium (water with 1% agar) were used to detect the viability of A. chrysogenum and its derivatives. For Agrobacterium tumefaciens-mediated transformation (ATMT), minimal medium, co-cultivation medium and induction medium were used as described previously [23]. YPD medium (per litter: yeast extract 10.0 g, tryptone 20.0 g, glucose 20.0 g, agar 20.0 g) was used for the growth of S. cerevisiae BY4742 (the wild-type strain) and its derivatives. Nitrogen-starved medium (SG-N) (per litter: YNB 1.7 g; Galactose 20.0 g; histidine 0.02 g; leucine 0.1 g; lysine 0.02 g; uracil 0.02 g) was used for detecting the viability of S. cerevisiae and its derivatives. Escherichia coli was used for propagating plasmids.

RNA isolation, quantitative real-time PCR and western blotting

Total RNA was isolated using Trizol Reagent (Invitrogen, USA) according to the commercial protocol and digested by DNase I to remove the genomic DNA as described previously [24, 25]. cDNA was obtained using the PrimeScript™ RT Reagent Kit (TaKaRa). Synthesis cDNA and real-time RT-PCR were performed as described previously [24]. Western blot analysis of the isopenicillin N synthase PcbC was performed and the glyceraldehyde-3-phosphate dehydrogenase (AcGapdh, GenBank accession No. MF383617) was used as control [21, 22].

Identification of Acatg8 and heterologous complementation of the S. cerevisiae ATG8 mutant

All primers used in this study were listed in Additional file 1: Table S2. We searched the genomic DNA sequence of A. chrysogenum CGMCC 3.3795 using the BLASTX program in the National Center for Biotechnology Information (NCBI). A query sequence, which encodes a putative protein showed 78% identity to Atg8 from S. cerevisiae, was designated Acatg8. To characterize Acatg8, the A. chrysogenum wild type strain (WT) was cultured in TSA liquid medium at 28 °C on a rotary shaker (220 rpm) for 48 h. The supernatant was discarded after centrifugation at 12,000 rpm for 5 min. After draining the mycelia with filter paper, liquid nitrogen was added to freeze the mycelia quickly. Then, the mycelia were crushed with sterilized pestle and mortar. DNA Quick Plant System (TianGen, China) and Trizol Reagent were used to isolate the fungal genomic DNA and total RNA respectively. DNA or cDNA of the speculated Acatg8 gene were amplified with primers Acatg8-F/Acatg8-R and inserted into the vector pEASY-Blunt (TransGen, Beijing) to generate pEB::Acatg8 and pEB::CAcatg8, respectively. The inserts of pEB::Acatg8 and pEB::CAcatg8 were verified by sequencing.

To complement the S. cerevisiae ATG8 mutant, the cDNA of Acatg8 was inserted into pYES2 (Invitrogen) under control of the yeast GAL1 promoter. The resulting plasmid pYES2::CAcatg8 was introduced into the S. cerevisiae ATG8 mutant using a small-scale yeast transformation protocol (Invitrogen, V825-20). Expression of Acatg8 in the transformants was verified by RT-PCR. Viability of the S. cerevisiae ATG8 mutant and its complemented strains was detected after incubation for 18 days on the nitrogen-starved medium (SG-N).

Localization of AcAtg8 in A. chrysogenum

The DNA fragment containing PAcatg8-GFP-Acatg8-T was amplified from pCMVPEAT [21] with primers peatF/R. After digestion with SwaI, the fragment was ligated into the corresponding sites of pAgB to give pAgB::PAcatg8-GFP-Acatg8-T. Finally, pAgB::PAcatg8-GFP-Acatg8-T was introduced into WT through ATMT. An Axio-observer A1 microscope (Carl Zeiss) was used for microscope observation. Zeiss AxioCam MR camera was used to capture the images of cells. For editing images, AxioVision software and Adobe-Photoshop CS3 software were used.

Constructions of the Acatg8 disruption mutant and its complemented strain

To construct the Acatg8 disruption mutant, a 5480 bp DNA fragment containing Acatg8 was amplified from WT with primers Acatg8DF/Acatg8DR and inserted into pEASY-Blunt (TransGen, Beijing) to generate pEB::Acatg8LR. After verified by sequencing, pEB::Acatg8LR was digested by SalI. The 1.5 kb SalI DNA fragment containing the bleomycin resistant gene (ble) from pJLRNAi was inserted into the corresponding site of pEB::Acatg8LR to give the plasmid pEB::Acatg8LR-B. Then, pEB::Acatg8LR-B was digested by SwaI and the DNA fragment containing Acatg8-ble was inserted into pAg1H3. The resulting plasmid pAg::Acatg8LR-B was introduced into WT via ATMT as described previously [22]. After 3 days of co-incubation at 24 °C, the bleomycin resistant and hygromycin B sensitive transformants were selected as the Acatg8 disruption mutant (∆Acatg8). Finally, ∆Acatg8 was verified by PCR with gene outside primers Acatg8-outF/R and Southern hybridization.

For genetic complementation, a 2331 bp DNA fragment containing the complete Acatg8 was amplified by PCR with primers Acatg8C-F/Acatg8C-R and subcloned into the SwaΙ site of pAg1H3 to give pAg::Acatg8C. Finally, pAg::Acatg8C was introduced into ∆Acatg8 via ATMT and the transformants were selected in the TSA medium with 50 μg ml−1 hygromycin B. The transformants were further verified by RT-PCR. One of them was randomly selected as the complemented strain (Acatg8C) and used in subsequent experiments.

Inducible expression of AcAtg8 in ∆Acatg8

For inducible expression of Acatg8 in ∆Acatg8, a 1.5 kb DNA fragment containing the xylose/xylan-inducible promoter (xylP) was amplified with primers xylP-F/R and inserted into the HindIII site of pEASY-Blunt, to give the plasmid pEB::xylP. The Acatg8 terminator region was amplified with primers Ter-F/R and inserted into the BamHI site of pEASY-Blunt, to give the plasmid pEB::T. The green fluorescent protein (GFP) encoding gene without stop codon was amplified from the plasmid pEGFP-N1 (Clontech) with primers gfpF/gfpNR and inserted into the BglII site of pEASY-Blunt to give the plasmid pEB::GFP. The Acatg8 without stop codon was amplified from the cDNA of A. chrysogenum with primers atg8F/R and inserted into the XbaI site of pEASY-Blunt to give the plasmid pEB::CAcatg8. The xylP, GFP, Acatg8 and the terminator region were in turn ligated into pCMV3xFlag-10 to generate pCMV::xylP-GFP-Acatg8-T. After digested with SwaI, the DNA fragment containing xylP-GFP-Acatg8-T was ligated into the corresponding sites of pAg1H3. Finally, the resulting plasmid pAg::xylP-GFP-Acatg8-T was introduced into ∆Acatg8 through ATMT. For inducible expression of Acatg8, the resulting strain ∆Acatg8/pAg::xylP-GFP-Acatg8-T was incubated in the LPE or modified MDFA medium supplemented with 1% xylose.

Detection of autophagy

Transmission electron microscopy (TEM) was used for detecting the fungal autophagy as described previously [21, 26]. For monodansyl cadavarine (MDC) dye analysis, 1 × 106 conidia of WT, ∆Acatg8 and Acatg8C were added to 20 ml of TSA medium and incubated at 28 °C for 20 h. The mycelia were harvested and washed with sterilized distilled water for three times, and then transferred into distilled water supplemented with 2 mM of phenylmethylsulfonyl fluoride (PMSF). The fungal cultures were collected after 4 h incubation and stained with MDC (Sigma-Aldrich, D-4008) at a final concentration of 60 µM for 30 min in the dark. After rinsed three times with water, samples were observed under fluorescence microscopy.

Detection of fungal conidiation and cephalosporin C production

Conidiation was detected as described previously [27]. Fermentation of A. chrysogenum and detection of CPC production were performed as described previously [21, 28]. Bacillus subtilis CGMCC 1.1630 was used as the indicator strain of CPC production.

Detection of PcbC and CefD2

For detecting expression of pcbC, a plasmid containing the PcbC-GFP fusion protein encoding gene was constructed. The pcbC coding region and its promoter region were amplified by PCR with primers Ppcbc-F/R and pcbC-F/R, respectively. After verified by sequencing, the amplified fragments were introduced into pCMV-GFP-T to give pCMV::PpcbC-pcbC-GFP-T. For detecting expression of cefD2, the same strategy was carried out. The cefD2 coding region and its promoter region were amplified with primers PcefD2-F/R and cefD2-F/R, respectively. After verified by sequencing, the amplified fragments were introduced into pCMV-GFP-T to give pCMV::PcefD2-GFP-cefD2-T. Then, the fragments containing PpcbC-pcbC-GFP-T and PcefD2-GFP-cefD2-T were amplified from pCMV::PpcbC-pcbC-GFP-T and pCMV::PcefD2-GFP-cefD2-T respectively and inserted into pAgHB to generate pAg::PpcbC-pcbC-GFP-T and pAg::PcefD2-GFP-cefD2-T. Finally, these two plasmids were introduced into WT and ∆Acatg8, respectively. The expressions and localizations of PcbC and CefD2 were observed under fluorescence microscopy.

Detection of pexophagy and mitophagy

Detection of pexophagy and mitophagy in A. chrysogenum was performed as described previously [22].

Results

Identification of the ATG8 homologue Acatg8 from A. chrysogenum

Since Atg8 proteins are highly conserved in fungi [29], an open reading frame (ORF) encoding an Atg8 homologous protein was identified in A. chrysogenum and it was designated Acatg8 (GenBank accession No. KJ569771). The cDNA of Acatg8 was amplified and sequenced. Comparing the sequences of Acatg8 and its cDNA, two introns (localized in positions + 93 to + 284 and + 504 to + 566 with respect to the translation initiation site) were found (Fig. 1a). The deduced protein of Acatg8 contains 118 amino acids, and its theoretical molecular weight is 13.7 kDa. Based on sequence alignment, AcAtg8 shows 96% identity to Atg8 from A. oryzae, 83% identity to Atg8 from Ustilago maydis, 69% identity to Atg8 from Dictyostelium discoideum, 91% identity to Atg8 from M. oryzae, 78% identity to Atg8 from S. cerevisiae (Fig. 1b).

Fig. 1
figure 1

Identification of an ATG8 gene homologue from A. chrysogenum. a Acatg8 with 2 introns. b Sequence alignment of AcAtg8 with its homologs. AcAtg8 shows 96% identity to Atg8 from A. oryzae, 83% identity to Atg8 from U. maydis, 69% identity to Atg8 from D. discoideum, 91% identity to Atg8 from M. oryzae, 78% identity to Atg8 from S. cerevisiae. The asterix indicates the glycine cutting site that is conserved at the C terminal. c Viability of ∆atg8 and its complemented strains. The viability of ∆atg8 and its complemented strains was detected after 18 days of incubation on the nitrogen-starved medium (SG-N). d Distribution of AcAtg8 in A. chrysogenum. Fluorescence observation demonstrated that AcAtg8 was widely distributed throughout the hyphae when the fungal strains grew under nutrient-rich conditions (Nonstarvation), while AcAtg8 was transferred into vacuoles under starvation condition (starvation). WT: the S. cerevisiae wild-type strain; ∆atg8: the S. cerevisiae ATG8 mutant; YC1-3: the complemented strains of ∆atg8; ∆atg8/pYES2: ∆atg8 carrying the plasmid pYES2 as the control; DIC; differential interference contrast; GFP: green fluorescent protein

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To address whether AcAtg8 has the same physiological function in autophagic process as Atg8 of S. cerevisiae, the plasmid pYES2::Acatg8 was constructed and introduced into the S. cerevisiae ATG8 mutant (∆atg8) which generally dies after a long time incubation under starvation condition. Three heterologous complemented strains of ∆atg8, designated as YC1-3, were obtained through uracil selection and Acatg8 expression was confirmed by RT-PCR (Additional file 1: Fig. S1). After 18 days of incubation on the nitrogen-starved medium (SG-N) at 30 °C, the S. cerevisiae wild-type strain (WT), ∆atg8 and YC1-3 were shifted to YPD medium. Both WT and YC1-3 grew well, but ∆atg8 and ∆atg8/pYES2 could not grow due to a long time nitrogen starvation (Fig. 1c), indicating that AcAtg8 complements the atg8 mutation in S. cerevisiae. Combined with the sequence alignment analysis, Acatg8 is the homologous gene of S. cerevisiae ATG8.

Acatg8 is essential for the autophagic process of A. chrysogenum

To detect the distribution of AcAtg8 in A. chrysogenum, pAgB::GFP-AcAtg8 used for GFP-Acatg8 expression was constructed and introduced into WT. The verified transformant was incubated in TSA medium for 16 h and then shifted into the sterile water containing 2 mM of phenylmethylsulfonyl fluoride (PMSF) for additional 4 h incubation. AcAtg8 was widely distributed throughout the hyphae under nutrient-rich growth conditions (Nonstarvation), while it was punctually localized under starvation growth conditions (starvation) (Fig. 1d). The distribution of AcAtg8 in A. chrysogenum resembles that of Atg8 in S. cerevisiae [30].

To further address its function, Acatg8 was disrupted in A. chrysogenum via homologous recombination (Additional file 1: Fig. S2). The Acatg8 disruption mutant (∆Acatg8) was verified by PCR and Southern hybridization, respectively (Additional file 1: Fig. S2). After transferred into the starvation condition, WT,∆Acatg8 and the complemented strain (Acatg8C) were cultured for 4 h. Transmission electron microscopy (TEM) demonstrated that autophagosomes were localized in the vacuoles of WT but not in ∆Acatg8, indicating that disruption of Acatg8 inhibits autophagic process of A. chrysogenum (Fig. 2a). In consistent with TEM observation, monodansyl cadavarine (MDC) analysis demonstrated that autophagosomes were localized in the vacuoles of WT, but not in the vacuoles of ΔAcatg8 (Fig. 2b). Acatg8C restored the wild-type phenomenon.

Fig. 2
figure 2

Effect of Acatg8 deficiency on autophagy of A. chrysogenum. a Transmission electron microscopy (TEM) analysis of WT and ∆Acatg8 under nutrition-shift condition. The autophagosomes were observed in the vacuole of WT, but not in that of ΔAcatg8 under starvation condition. V: vacuole; AB: autophagic body; M: mitochondria. Bars, 500 nm. b Distribution of autophagosomes in WT, ∆Acatg8 and Acatg8C. The autophagosomes were observed in the vacuoles of WT, but not in the vacuoles of ∆Acatg8. The complemented strain restored the wild-type phenomenon. Images were observed after 4 h induction. DIC: differential interference contrast; MDC: monodansyl cadavarine

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Growth, conidial germination and conidiation were reduced in ∆Acatg8

Since ATG8 is essential for yeast survival under starvation condition, the effect of Acatg8 deficiency on the growth of A. chrysogenum was detected under nutrient-starvation condition. After grown on TSA medium for 3 days, the hyphae of WT, ∆Acatg8 and Acatg8C were collected and transferred into Czapek medium, Czapek–N medium (No nitrogen), Czapek–C medium (No carbon) and WA medium (water with agar 1%) respectively and incubated for additional 7 days. Comparing the colonial diameters of different strains demonstrated that ∆Acatg8 grew slower than WT and Acatg8C, and ∆Acatg8 hardly grew on WA medium (Fig. 3a). These results indicated that Acatg8 is important for the growth of A. chrysogenum under starvation condition.

Fig. 3
figure 3

Growth, conidial germination and conidiation of WT, ∆Acatg8 and Acatg8C. a Growth of WT, ∆Acatg8 and Acatg8C was detected. After incubated in TSA medium for 72 h, hyphae of WT, ∆Acatg8 and Acatg8C were transferred to Czapek medium, Czapek–N medium (No nitrogen), Czapek–C medium (No carbon) and WA medium (water with agar 1%). The colony diameters of different strains were measured. The asterix indicates that the differences between strains are significant. p < 0.001***; p < 0.01**; p < 0.05*. b Disruption of Acatg8 reduces conidial germination. When grown on LPE medium, the conidial germination of ∆Acatg8 was delayed compared with that of WT and Acatg8C. c Disruption of Acatg8 reduces fungal conidiation. The number of conidia in ∆Acatg8 grown on LPE medium for 7 days was only about 5% of that in WT. Error bars show standard deviations of three independent experiments. The asterix indicates that the differences between strains are significant. p < 0.001***; p < 0.01**; p < 0.05*. d Conidiation of WT, ∆Acatg8 and Acatg8C on LPE medium for 7 days was observed under microscope

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When grown on LPE medium, spore germination of ∆Acatg8 was delayed compared with that of WT and Acatg8C (Fig. 3b). It is possible that autophagy is also involved in spore germination of A. chrysogenum. The plasmid pAg::PAcatg8-GFP-Acatg8-T used for GFP-Acatg8 expression was constructed and introduced into WT, and germination of the verified transformant was detected under fluorescence microscope. Punctates of GFP-AcAtg8 were observed during spore germination, implying autophagosomes were formed (Additional file 1: Fig. S3). It is speculated that fungal cells degrade the stored nutrients (glycogen, fat droplets, etc.) through the autophagic process when the spores rapidly germinate under appropriate conditions. Similar with that found in M. oryzae [31], disruption of Acatg8 dramatically reduced conidiation of A. chrysogenum (Fig. 3c and 3d). Meanwhile, the transcript levels of AcbrlA, AcwetA and AcabaA, as the key genes for conidiation of A. chrysogenum [27], were evaluated. A non-conidiation related gene glyceraldehyde-3-phosphate dehydrogenase encoding gene AcGapdh (GenBank accession No. MF383617) of A. chrysogenum was used as control. Transcriptional analysis revealed that disruption of Acatg8 significantly decreased the transcriptional level of AcbrlA,AcwetA and AcabaA (Additional file 1: Fig. S4). These results indicated that Acatg8 is important not only for the growth and conidial germination, but also for the fungal conidiation of A. chrysogenum.

Addition of exogenous carbon sources partially restores the conidiation of ∆Acatg8

Combined with the results above, we speculated that ∆Acatg8 could not recycle its own cellular components due to autophagic defect. Therefore, ∆Acatg8 could not provide enough nutrients or energy for conidiation. To verify our speculation, exogenous nitrogen and carbon sources were added in LPE medium. As expected, supplementation of exogenous carbon sources partially restored the conidiation of ∆Acatg8 (Table 1). However, supplementation of exogenous nitrogen sources could not restore the conidiation of ∆Acatg8 (Table 1). It has been reported that the conidial formation was affected by the cellular glycogen in M. oryzae [31]. In M. oryzae, disruption of MoATG8 dramatically reduced the conidial formation and exogenous supply of glucose or deletion of a glycogen phosphorylase Gph1 could suppress the conidiation defects, indicating glycogen homeostasis is important for fungal conidiation. Like in M. oryzae, carbon source such as glucose in the culture medium may affect glycogen homeostasis or the enzymes involved in glycogen metabolism, and in turn partially recover the phenotype caused by autophagic defect in ∆Acatg8.

Table 1 Effects of supplemented carbon/nitrogen sources on conidiation of A. chrysogenum
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Cephalosporin C production is significantly increased in ∆Acatg8

Our previous study showed that disruption of Acatg1 increased CPC yield through reducing degradation of cephalosporin biosynthetic proteins [21], indicating deficiency of autophagy facilitates antibiotic production. Therefore, the CPC production of ∆Acatg8 was detected. As expected, the CPC production increased threefold in ∆Acatg8 compared with that in WT (Fig. 4a). What excites us most is that not only the yield of CPC was increased, but also CPC was produced earlier in ∆Acatg8. Only 12 h fermentation, ∆Acatg8 started to produce appreciable quantity of CPC in MDFA medium. While the CPC production was hardly detected in WT before 48 h fermentation. Unfortunately, disruption of Acatg8 significantly decreased the fungal biomass (Fig. 4b). Furthermore, transcript levels of the key genes (pcbAB, pcbC, cefD1, cefD2, cefEF and cefG) for cephalosporin biosynthesis in A. chrysogenum were measured by real time RT-PCR (Fig. 5). In consistence with CPC production, the transcription of these key genes was maintained continuously at a relatively high level in ∆Acatg8 from 12 to 48 h. These results indicated that at least one of the reasons for the yield increase and earlier production of CPC was due to the elevated expression of cephalosporin biosynthetic genes. However, the transcription of these key genes in ∆Acatg8 was quickly declined after 96 h fermentation and the transcription level was even lower than that in WT. To explain the contradiction between CPC yield and the biosynthetic gene transcripts at the late stage of fermentation, the degradation of PcbC was detected in ∆Acatg8 and WT.

Fig. 4
figure 4

Disruption of Acatg8 significantly increases cephalosporin C production of A. chrysogenum. a Cephalosporin C production of WT, ∆Acatg8 and Acatg8C was detected during fermentation in the modified MDFA medium. b Biomass of WT, ∆Acatg8 and Acatg8C during fermentation. The fungal mycelium dry weight was determined after drying at 42 °C in a hot air oven until a constant weight. After 72 h fermentation, the mycelium dry weight of ∆Acatg8 dropped quickly. Error bars show standard deviations of three independent experiments

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Fig. 5
figure 5

Transcriptional analysis of the cephalosporin biosynthetic genes. a The cephalosporin C biosynthetic pathway. ACV, tripeptide δ-(l-α-aminoadipyl)-l-cysteinyl-d-valine; IPN: isopenicillin N; PenN: Penicillin N; DAOC: deacetoxycephalosporin C; DAC: deacetylcephalosporin C; CPC: cephalosporin C. b The relative transcriptional level of the cephalosporin biosynthetic genes. The relative abundance of mRNAs was standardized against the level of actin gene. The gray columns and black columns represent the relative gene transcriptions of WT and ∆Acatg8, respectively. Error bars show standard deviations of three independent experiments. The asterix indicates that the differences between strains are significant. p < 0.001***; p < 0.01**; p < 0.05*

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Western blot analysis revealed that the quantity of PcbC in ∆Acatg8 was higher than that in WT not only at the early stage but also at the late stage of fermentation (Fig. 6a), suggesting accumulation of PcbC is one of the reasons for cephalosporin yield increment in ∆Acatg8. Fluorescence observation further demonstrated that there was no fluorescence in the vacuoles of WT and ∆Acatg8 at the early stage of fermentation. At the late stage of fermentation, the vacuoles of WT were filled with fluorescence, indicating most of the PcbC was transferred into vacuoles for degradation. While there was no fluorescence in the vacuoles of ∆Acatg8 and PcbC was accumulated in the cytoplasm (Fig. 6b), indicating PcbC was retained in ∆Acatg8. Therefore, it is possible that deficiency of autophagy reduces the degradation of cephalosporin biosynthetic proteins and in turn increases CPC production at the late stage of fermentation in A. chrysogenum.

Fig. 6
figure 6

Detection of PcbC in WT and ∆Acatg8 during fermentation. a Western blot analysis of PcbC in WT and ∆Acatg8. Mycelia cultured in the modified MDFA medium for 72, 96, 120 and 144 h were collected. 50 μg of total protein was loaded for Western blot analysis with anti-PcbC. Gapdh was used as control. The ratio of PcbC to Gapdh is shown at the bottom. b PcbC was detected under fluorescence microscope after 48 and 144 h fermentation. PcbC in WT and ∆Acatg8 were labeled with a green fluorescent protein (GFP)

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Disruption of Acatg8 dramatically reduces fungal viability at the late stage of fermentation

It is interesting to find that disruption of Acatg8 remarkably increased CPC production. However, the fungal biomass demonstrated the viability of ∆Acatg8 was significantly reduced especially at the late stage of fermentation (Fig. 4b). These results further indicated that Acatg8 is very important for fungal survival and related with CPC production. It is reasonable that WT can degrade cellular components and recycle nutrient through autophagy at the late stage of fermentation, while ∆Acatg8 could not since its autophagic process is inhibited. In addition, many toxic substances especially reactive oxygen species (ROS) were gradually accumulated along with the metabolic process during extension of cell survival time. The accumulation of ROS is speculated as an important factor for causing the death of ∆Acatg8. To confirm our speculation, the citric acid dehydrogenase (Cit) fused with GFP was used to mark mitochondria (Additional file 1: Fig. S5). The fluorescence observation showed that mitochondria of WT were almost degraded in vacuoles at the late stage of fermentation, while no fluorescence was observed in vacuoles of ∆Acatg8 and a large number of mitochondria were accumulated in the cytoplasm of ∆Acatg8. Thus, disruption of Acatg8 not only caused autophagic defect but also blocked the normal degradation of mitochondria. The accumulation of mitochondria, especially those dysfunctional mitochondria, could lead to the accumulation of ROS which causes premature death of ∆Acatg8.

Inducible expression of Acatg8 in ∆Acatg8 improves fungal viability but maintains high cephalosporin C yield at the late stage of fermentation

The premature death is unfavorable for CPC production, especially in industry. To overcome the premature death of ∆Acatg8, the endogenous xylose/xylan-inducible promoter xylP was used for inducible expression of Acatg8. The promoter xylP, which is induced by xylose/xylan but repressed by glucose, has been successfully used in A. chrysogenum [32]. The plasmid pAg::xylP-GFP-Acatg8-T was constructed and introduced into ∆Acatg8 (Additional file 1: Fig. S6). As expected, ∆Acatg8/pAg::xylP-GFP-Acatg8-T dramatically increased fungal conidial formation in LPE plates supplemented with 1% xylose. The number of conidia in ∆Acatg8/pAg::xylP-GFP-Acatg8-T was about the same as that in WT (Additional file 1: Fig. S6). Then the expression of GFP in ∆Acatg8/pAg::xylP-GFP-Acatg8-T was detected at the sixth day of fermentation. Fluorescence observation indicated that GFP was expressed under control of xylP at the late stage of fermentation when glucose in the medium was depleted (Additional file 1: Fig. S7). In consistent with the expression of GFP, Acatg8 was expressed in the presence of xylose when the non-inducing carbon source glucose was depleted in ∆Acatg8/pAg::xylP-GFP-Acatg8-T.

As mentioned above, the biomass of ∆Acatg8 was only about 60% of WT at the late stage of fermentation due to the autophagic defect. When Acatg8 was expressed in ∆Acatg8/pAg::xylP-GFP-Acatg8-T, the fungal viability was restored to the wild-type level just like the conidial formation (Fig. 7a). The CPC production of ∆Acatg8/pAg::xylP-GFP-Acatg8-T was also detected. Like ∆Acatg8, ∆Acatg8/pAg::xylP-GFP-Acatg8-T still kept the ability to produce more CPC in presence of xylose (Fig. 7b). Although it was lower than that of ∆Acatg8 at 96 h fermentation, the CPC yield of ∆Acatg8/pAg::xylP-GFP-Acatg8-T maintained at the high level during prolonged fermentation.

Fig. 7
figure 7

Cephalosporin C production of WT, ∆Acatg8 and ∆Acatg8/xylP-GFP-Atg8 in the modified MDFA medium supplemented with 1% xylose. a Growth of WT, ∆Acatg8 and ∆Acatg8/pAg::xylP-GFP-Acatg8-T during fermentation. The fungal mycelium dry weight was determined after drying at 42 °C in a hot air oven until a constant weight. ∆Acatg8/pAg::xylP-GFP-Acatg8-T, ∆Acatg8 was complemented with Acatg8 under the xylose inducible promoter xylP. b Cephalosporin C production of WT, ∆Acatg8 and ∆Acatg8/pAg::xylP-GFP-Acatg8-T. Cephalosporin C production was determined by bioassays against B. subtilis CGMCC 1.1630. 40 μl of culture filtrates of fermentation was used to detect the cephalosporin C production. The plate was added 50,000 units of penicillinase to exclude penicillin in culture filtrates. Error bars show standard deviations of three independent experiments

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Discussion

Autophagy is the highly conserved eukaryotic physiological process which plays a vital role in maintaining intracellular carbon and nitrogen homeostasis [33]. Previous study showed that autophagy was related with morphological differentiation and antibiotic production in filamentous fungi [15, 21]. During fermentation, the morphological differentiation of the high CPC producing strain proceeded rapidly. Swollen hyphal fragments and arthrospores appeared at 72 h fermentation [34]. In contrast with the arthrospore formation, an inverse relation was found between the fungal growth and CPC production [35]. Combining our results that inhibition of autophagy increased CPC production but decreased the fungal viability, it is possible that the autophagy was reduced in the high CPC producing strain.

In this study, the physiological function of core autophagy-related gene Acatg8 was investigated. Disruption of Acatg8 resulted in a significant increment of CPC yield. However, the fungal viability and conidiation were remarkably reduced in ∆Acatg8 due to the autophagic defect. To overcome the defects of the fungal viability and conidiation, the xylose/xylan-inducible promoter xylP was used to control the expression of Acatg8 in ∆Acatg8. Through inducible expression of Acatg8 in ∆Acatg8, the fungal conidiation and growth were restored to the wild-type level, while the CPC production still maintained at a high level as we expected.

Peroxisomes are single-membrane organelles not only involved in the β-oxidation of fatty acids but also involved in secondary metabolite biosynthesis [36]. In P. chrysogenum, the final steps for conversion of isopenicillin N to penicillin G occur in peroxisomes [37, 38]. It was also found that the high penicillin producing strains contain more peroxisomes and increasing peroxisome numbers by overexpression of pex11 increased penicillin production 2–3 fold [39, 40]. Sequence analysis revealed that some essential proteins for cephalosporin biosynthesis contain putative peroxisomal targeting signals (PTS), indicating that peroxisomes are also involved in CPC production [41]. It is reasonable that not only enhancing peroxisome proliferation but also inhibiting peroxisome degradation could increase peroxisome numbers. Disruption of Acatg8 clearly inhibited peroxisome degradation and increased peroxisome accumulation (Additional file 1: Fig. S8). Since CefD2 is localized in peroxisomes, increase peroxisome numbers could enhance the concentration of CefD2. As expected, fluorescence observation demonstrated CefD2 retained in ∆Acatg8 even after 144 h fermentation (Additional file 1: Fig. S9). We speculate that peroxisome accumulation is one of the main reasons for the CPC enhancement in ∆Acatg8. However, the peroxisome accumulation through disruption of Acatg11 did not increase CPC production [22]. It is possible that Acatg11 has multiple functions and some of them are positive related with CPC production.

In S. cerevisiae, autophagy is the main mechanism for maintaining cellular survival under starvation condition [42, 43]. Fungal cells tend to die once autophagy is inhibited [44, 45]. In filamentous fungi, autophagy is used for recycling the carbon and nitrogen sources and reconstituting the intracellular components during fungal morphological differentiation. Under starvation condition, the mycelia base cells will degrade their material and transport to the apical cells. These nutrients were used to promote the mycelial growth [46]. This mechanism allows the colony to expand and makes it easier to find usable substances. Like most of filamentous fungi, the disruption mutant of Acatg8 could not grow well under starvation condition due to the autophagic defect, indicating that Acatg8 is necessary for the survival of A. chrysogenum under starvation condition.

A large number of accumulated mitochondria were also observed in ∆Acatg8 at the late stage of fermentation (Additional file 1: Fig. S5). In S. cerevisiae, autophagic defect leads to mitochondrial dysfunction and accumulates excessive ROS [47]. In mammalian cells, excessive ROS will induce the autophagy-mediated cell death [48]. This could be the main reason of ∆Acatg8 viability reduction since dysfunctional mitochondria produce excessive ROS which impairs fungal survival.

Premature death of ∆Acatg8 is an intractable problem since it will result in cephalosporin biosynthesis termination, it was also found in the Acatg1 disruption mutant [21]. To solve this problem, inducible expression of Acatg8 under xylP was performed in ∆Acatg8. Inducible expression of Acatg8 remarkably improved the viability of ∆Acatg8, especially at the late stage of fermentation when glucose was depleted, while the CPC yield still maintained at a high level. Thus, the inducible expression of autophagy-related genes could be a general method for increasing antibiotic production and maintaining the fungal viability in the autophagic deficiency strains.

Conclusions

In this study, we identified and characterized an autophagy related gene Acatg8 which could complement the ATG8 disruption mutant (Δatg8) of S. cerevisiae. AcAtg8 is localized in the cytoplasm and autophagosome of A. chrysogenum based on the observation of fluorescently labeled AcAtg8, and the expression of Acatg8 was clearly induced by starvation. Disruption of Acatg8 inhibited the autophagosome formation of A. chrysogenum and reduced the fungal conidiation, but increased the CPC production through enhancing the transcription of cephalosporin biosynthetic genes and retaining their products. However, disruption of Acatg8 seriously reduced the fungal viability. Through inducible expression of Acatg8 under the xylose/xylan-inducible promoter xylP, the fungal viability was restored while the CPC production still maintained at a high level. This study provides a promising approach for antibiotic production improvement through modulating the autophagic process of A. chrysogenum and extends our understanding of the relationship between secondary metabolite production and fungal autophagy.

Abbreviations

WT:

the wild-type strain

∆Acatg8:

the Acatg8 disruption mutant

Acatg8C:

the complemented strain of ∆Acatg8

ACV:

tripeptide δ-(l-α-aminoadipyl)-l-cysteinyl-d-valine

IPNS:

isopenicillin N synthetase

IPN:

isopenicillin N

DAOC:

deacetoxycephalosporin C

DAC:

deacetylcephalosporin C

ORF:

open reading frame

SG-N:

nitrogen-starved medium

TEM:

transmission electron microscopy

ROS:

reactive oxygen species

RFP:

red fluorescent protein

GFP:

green fluorescent protein

hph :

hygromycin phosphotransferase gene

ble :

bleomycin resistance gene

ATMT:

Agrobacterium tumefaciens-mediated transformation

CPC:

cephalosporin C

MDC:

monodansyl cadavarine

PMSF:

phenylmethylsulfonyl fluoride

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Authors’ contributions

HL, PH, YW and YP participated in the experiments and analyzed the primary data. HL, PH and YW drafted the manuscript. HL and YW carried out all the construction of strains and plasmids used in this study and performed the fermentation and transcription experiments. PH performed all the fluorescence observation of the fungal cells. YP assisted with the experiment and analysis. GL supervised the whole work and revised the manuscript. All authors read and approved the final manuscript.

Acknowledgements

We are grateful to Prof. Juan F. Martín (Universidad de León, Spain) for providing the plasmid pJL43-RNAi and the staffs from Core Facility for Protein Research (Institute of Biophysics, CAS) for helps with transmission electron microscopy analysis. We thank Prof. Wei Li (Institute of Zoology, CAS) for providing Saccharomyces cerevisiae BY4742 and ∆atg8. We thank Prof. Seogchan Kang (Penn State University, USA) and Prof. Xingzhong Liu (Institute of Microbiology, CAS) for providing plasmid pAg1-H3.

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  1. Honghua Li, Pengjie Hu and Ying Wang Contributed equally to this work

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  1. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China

    Honghua Li, Pengjie Hu, Ying Wang, Yuanyuan Pan & Gang Liu

  2. University of Chinese Academy of Sciences, Beijing, 100049, China

    Honghua Li & Gang Liu

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Additional file

Additional file 1: Table S1.

Strains and plasmids used in this study. Table S2. Primers used in this study. Fig. S1. Verification of the heterologous complemented strains of ∆atg8 by RT-PCR. Fig. S2. Construction of the Acatg8 disruption mutant. Fig. S3. Localization of AcAtg8 during conidial germination of A. chrysogenum. Fig. S4. Relative transcriptional level of AcbrlA, AcwetA and AcabaA for conidiation in WT, ∆Acatg8 and Acatg8C. Fig. S5. Degradation of mitochondria in WT and ∆Acatg8. Fig. S6. Complementation of ∆Acatg8 with Acatg8 under control of xylP. Fig. S7. Inducible expression of Acatg8 under control of xylP. Fig. S8. Degradation of peroxisomes in WT and ∆Acatg8 during fermentation. Fig. S9. Degradation of CefD2 in WT and ∆Acatg8 during fermentation.

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Li, H., Hu, P., Wang, Y. et al. Enhancing the production of cephalosporin C through modulating the autophagic process of Acremonium chrysogenum. Microb Cell Fact 17, 175 (2018). https://doi.org/10.1186/s12934-018-1021-9

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Microbial Cell Factories

ISSN: 1475-2859

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