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Review

Patents on Endophytic Fungi Related to Secondary Metabolites and Biotransformation Applications

by
Daniel Torres-Mendoza
1,2,
Humberto E. Ortega
1,3 and
Luis Cubilla-Rios
1,*
1
Laboratory of Tropical Bioorganic Chemistry, Faculty of Natural, Exact Sciences and Technology, University of Panama, Panama 0824, Panama
2
Vicerrectoría de Investigación y Postgrado, University of Panama, Panama 0824, Panama
3
Department of Organic Chemistry, Faculty of Natural, Exact Sciences and Technology, University of Panama, Panama 0824, Panama
*
Author to whom correspondence should be addressed.
J. Fungi 2020, 6(2), 58; https://doi.org/10.3390/jof6020058
Submission received: 31 March 2020 / Revised: 27 April 2020 / Accepted: 29 April 2020 / Published: 1 May 2020

Abstract

:
Endophytic fungi are an important group of microorganisms and one of the least studied. They enhance their host’s resistance against abiotic stress, disease, insects, pathogens and mammalian herbivores by producing secondary metabolites with a wide spectrum of biological activity. Therefore, they could be an alternative source of secondary metabolites for applications in medicine, pharmacy and agriculture. In this review, we analyzed patents related to the production of secondary metabolites and biotransformation processes through endophytic fungi and their fields of application. We examined 245 patents (224 related to secondary metabolite production and 21 for biotransformation). The most patented fungi in the development of these applications belong to the Aspergillus, Fusarium, Trichoderma, Penicillium, and Phomopsis genera and cover uses in the biomedicine, agriculture, food, and biotechnology industries.

Graphical Abstract

1. Introduction

The term endophyte refers to any organism (bacteria or fungi) that lives in the internal tissues of a host. This endophyte–host association is complex: it is normally driven without causing harm or apparent disease symptoms and provides benefits in survival, fitness, biodiversity, and ecosystem function for both parties by enhancing the response to environmental stress and producing the same or similar compounds that originate in the host [1,2,3]. In particular, fungal endophytes have been the focus of many studies due to their prospective promise in the production of secondary metabolites with pharmacological, agricultural, industrial, or biotechnological applications [4,5,6].
Endophytic fungi were discovered over a century ago; however, it was not until about three decades ago, with the discovery of the taxol-producing endophytic fungus Taxomyces andreanae, that they gained remarkable relevance due to the abovementioned production of active secondary metabolites [7,8,9,10].
As was the case with taxol, the process for the isolation and purification of metabolites in adequate yields remains a major concern; low yields due to the exploitation of the host for the extraction process of metabolites are also associated with environmental impacts, and new strategies such as involving the use of endophytic microorganisms instead of the host themselves have offered new niches that should be meticulously investigated and used as a base for sustainable research and development [11,12].
The present review covers patents related to the production of natural products with biomedical and agricultural applications using endophytic fungi, enabling the development of new lead compounds in the process of finding new drug candidates or precursors for the synthesis of new molecules. We also cover the production of secondary metabolites in biotransformation processes by using endophytic fungi.

2. Materials and Methods

This review was conducted mainly through searches of the databases Scifinder® and Google Patents. Our search was made under the subjects “endophytic fungi” and “patents” covering the period from 2001 to 2019. 4670 references were found. After removing duplicates, we selected those related to the production of secondary metabolites and biotransformation. Resulting in 245 documents from which 224 were related to any kind of secondary metabolite derived from endophytic fungi and 21 detail biotransformation processes of metabolites through endophytic fungi. The patents covered in this study are described in Table 1 and Table 2.

3. Results

The description and analysis of patents was divided into two sections: those that are connected to the production of secondary metabolites and those associated with biotransformation processes. Likewise, two tables were constructed in which the main generalities of each patent are summarized.

3.1. Production of Secondary Metabolites

Early patents consisted mainly of registering the endophytic strains capable of producing specific compounds or those that represented a novel source of active metabolites (chanoclavine in EP1142986A2; resveratrol in CN1948459A; gallic acid in CN101280279A; taxol in CN101486974A) and very few applications. However, over time, patents were developed to include the registration of methods and procedures to produce and recover the compounds of interest (with a known biomedical application) or to optimize or increase their production (podophyllotoxin in US20040248265A1; taxol in CN1624103A; camptothecin in US20060134762A1; huperzine A in CN101275116A). In the last ten years, patents have been focused on using novel or enhanced fermentation processes to obtain high yields of products and provide possible applications for the metabolites (alpha-pyrone in CN110563740A; epimedins A–C in CN110511876A; differanisole A in CN109971655A; 5, 8-ergosterol epoxide in CN109971651A). The distribution of the patents in relation with the principal areas of application are illustrated in Figure 1. The production of taxol and huperzine A were considered as other application outside of their anticancer and anti-Alzheimer property respectively, due to the number of patents and economic importance.
The principal applications consist on providing metabolites that are precursors of bioactive molecules (baccatin III and cephalomannine in CN103194502A) and those that can be use as anticancer, antitumor, antineoplastic or immunosuppressive agents (anthraquinone compounds in CN102586355A; cerrenin D in CN109456191A; alterporriol P in CN102633616A; dalesconol A and B in CN104031948A; quinazoline alkaloid compound in CN103570744A); in pesticides, insecticidal, algal control (diterpene alkaloid-like compounds in CN102190699A); as antibacterial, antibiotic, antimicrobial, bacteriostatic (beauvericin in CN101240249A; diterpene alkaloid compound in CN102190612A); as antifungal and antimycotics (Trichoderma acid in CN103083290A); in neurodegenerative diseases and neuroprotective agent (huperzine A in CN102191294A); as agents in pharmacy, food, cosmetics, agriculture and health care products (pseutorin A in CN104774774A; alterlactone in CN110093383A); antioxidant (flavipin in CN103087923A); anti-inflammatory and anti-rrheumatic (1,4-napthoquinones in CN109293494A); in cardiovascular diseases (breviscapine in CN1421522A); anti-diabetes (2 isabolene sesquiterpenes in CN109096056A); anti-tuberculosis (enniatin compounds in CN101669939A); antiviral (alterporriol Q and R in CN102643186A); as pigments; hepatoprotective agents (pyrrole-type compounds in CN103667073A); in biofuels. Table 1 displays the patents, endophytic fungi, host organism, secondary metabolites, and disclosed applications. The structures of the compounds listed in Table 1 and Table 2 are shown in Figure S1 (see the Supplementary Information).
The principal endophytic fungi reported in this section of patents belong to the genera Aspergillus, Fusarium, Trichoderma, Penicillium, and Phomopsis with 31, 24, 18, 16, and 8 patents, respectively, and compounds such as taxol or paclitaxel, huperzine A, camptothecin, podophyllotoxin, and resveratrol. Methods for enhancing their production represented most of the registered applications. Furthermore, the diversity of compound structures demonstrates the capability of fungi to synthetize simple or very complex molecules.
Mostly, Aspergillus endophytes from plants of the genera Taxus and Torreya are described as having applications related to obtaining the highest yield of paclitaxel or its precursors, like baccatin III and cephalomannine, due to their anticancer activity. Endophytes from Huperzia serrata have been linked to the production of huperzine A and its analogs due to their anti-senile dementia and anti-neurodegenerative applications. Plant endophytes such as Nothapodytes nimmoniana and Camptotheca acuminata have been linked to the production of the antineoplastic agent camptothecin and some analogs. Production of the lignan-type compound podophyllotoxin has been described for several endophytes. This compound has high biomedical potential as an anticancer, antiviral, and antibacterial agent, among others, and is the precursor of the anticancer drugs etoposide and teniposide. The stilbenoid compound found on grape skin, resveratrol, could have promising therapeutic actions against obesity, type II diabetes mellitus, metabolic syndrome, cancer, autism, dementia, and Alzheimer’s disease [13]. Therefore, a number of patents involving endophytes of the genera Cladosporium, Fusarium, Alternaria, and Penicillium for its production were registered. The demand for natural resveratrol has gained traction in various end-use industries.

3.2. Biotransformation by Endophytic Fungi

Biotechnological processes enable the production of useful molecules with a decrease in the generation of pollutants, reducing the use of solvents and reagents, minimizing the consumption of energy, and providing a way to obtain active compounds with greater specificity and efficiency. The use of endophytic fungi in biotechnological processes, such as biotransformation, is in its early stages of development and has some limitations [238]. However, there have been some reports of fungi that have been used in biotransformation [239,240,241,242].
Table 2 lists a group of patents that illustrate the efforts toward using endophytic fungi to obtain molecules of biological importance such as the ginsenosides [243] and glycyrrhetinic acid monoglucuronide [244].
Fungi from the genera Absidia, Zygorhynchus, Xylaria, and Fusarium have been patented to obtain ginsenoside Rd by the transformation of ginsenoside Rb1. Fungi from the genera Microsphaeropsis, Aspergillus, and Chaetomium have been patented for the biotransformation of glycyrrhizinic acid into glycyrrhetinic acid monoglucuronide.

4. Discussion

The study of endophytic fungi as a source of bioactive secondary metabolites has its first beginnings in 1993 with the discovery of taxol [4], until then, the primary sources of active natural molecules were isolated mainly from plants [266]. About two decades ago, the study of endophytic fungi as producers of active molecules has been emphasized due to obtaining compounds originally produced by plants or due to the production of novel secondary metabolites [11,267], Thus, fungi from genus Aspergillus, Fusarium, Penicillium and Pestalotiopsis has been recognized as producers of anticancer compounds and having pharmaceutical potential [12,268]. It is estimated that only around 1% of the microorganisms have been cultivated, and within this groups, endophytic fungi corresponded to the least studied [269].
Through this review, we have demonstrated the wide number of endophytic fungi involved in the development of methods and techniques for the application of isolation and fermentation to obtain secondary metabolites with high potential and applications in biomedicine, agriculture, and biotechnology processes. Figure 2 shows the number of patents registered for secondary metabolites and biotransformation processes through endophytic fungi for the period from 2001 to 2019. We found 224 patents related to secondary metabolites and 21 patents related to biotransformation. Aspergillus, Fusarium, Trichoderma, Penicillium, and Phomopsis were the most representative genera for secondary metabolites.
Fusarium and Penicillium were the most commonly registered endophytic fungi genera among the 21 patents reviewed for biotransformation processes. Figure 3 shows the number of patented genera. The most notable applications patented were antimicrobial, antibacterial, anticancer, and those related to neurodegenerative diseases. For biotransformation processes, the conversion of ginsenosides and glycyrrhizinic acid were the most patentable applications due to their importance and potential in the pharmaceutical and food industries.
Table 1 and Table 2 showed that the majority of the endophytic fungi were derived from plants, but we could also find patents where the host was soft corals or insects.
The global market for compounds like taxol is expected to reach USD $99 million by 2021 [270], and for resveratrol, the projected growth from 2018 to 2028 in revenue terms is 8.1% from USD $97.7 million [271]. Under the objectives of the 1992 Convention on Biological Diversity for the sustainable use of its components and the Nagoya Protocol on Access to Genetic Resources and the Fair and Equative sharing of benefits derived from the use of genetic resources [272], endophytic fungi and their derived compounds could open a new set of industries and economics in development countries with high biodiversity for the low-cost yield of high-profit molecules that can be applied in the fields discussed in this review.

Supplementary Materials

The following are available online at https://www.mdpi.com/2309-608X/6/2/58/s1, Figure S1: Structures of the secondary metabolites listed in Table 1 and Table 2.

Author Contributions

D.T.-M. and H.E.O. Performed the data search and analysis, visualized and wrote the manuscript, L.C.-R. conceptualized, visualized, supervised, wrote and review the manuscript. All authors read and approved the final manuscript.

Funding

This project was supported by the National System of Research (SNI) and the National Secretariat for Science and Technology of Panama (SENACYT).

Acknowledgments

The authors want to thank University of Sao Paulo, Brazil, for granted access to “Portal de Periodicos CAPES/MEC” and to Phyllis D. Coley for critical review of the manuscript.

Conflicts of Interest

The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.

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Figure 1. Progression on the patents and fields of application in the periods 2001–2009 compared to 2010–2019. x-axis year; y-axis numbers of patents.
Figure 1. Progression on the patents and fields of application in the periods 2001–2009 compared to 2010–2019. x-axis year; y-axis numbers of patents.
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Figure 2. Number of registered patents from 2001 to 2019 linked to endophytic secondary metabolites and biotransformation processes through endophytic fungi.
Figure 2. Number of registered patents from 2001 to 2019 linked to endophytic secondary metabolites and biotransformation processes through endophytic fungi.
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Figure 3. Number of patents reported for various endophytic fungi by genera.
Figure 3. Number of patents reported for various endophytic fungi by genera.
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Table 1. Endophytic fungi and their methods of production of natural products.
Table 1. Endophytic fungi and their methods of production of natural products.
Patent No.EndophyteHost 1Patent DetailsRef.
EP1142986A2Neotyphodium sp.Not disclosedChanoclavine (1)-production.[14]
US6329193B1Cladosporium macrocarponTaxus spp.Production of taxol.[15]
CN1421522AAlternaria sp.Erigeron sp.Production of breviscapine B (2) and other flavonoids for the treatment of cardiovascular diseases and for preparing antitumor medicine.[16]
US6638742B1Alternaria sp.Alnus rubra, Corylus sp., Cytisus scoparius, Ginkgo sp.Methods for obtaining and recovering taxanes, including paclitaxel (3), from novel sources.[17]
US6613738B1Cryptosporiopsis cf. quercinaTripterigeum wilfordiiIsolation of cryptocandin possessing antifungal activity.[18]
US20040185031A1Muscodor vitigenusPaullinia paullinioidesNovel fungi that produces naphthalene and applications.[19]
US20040206697A1Muscodor albusCinnamon treeNovel fungi and production of organic volatile antibiotics effective in the treatment of human and animal waste.[20]
US20040248265A1Phialocephala fortiniiPodophyllum sp.Identification of podophyllotoxin-producing fungi and methods for recovering podophyllotoxin (4) from such fungi.[21]
WO2004106487A2Neotyphodium loliiPooideae grassProduction of janthitrem epoxide (5) compounds in combination with ryegrass instead of compounds that affect the health and performance of grazing animals.[22]
CN1624103AMix of Taxus endophytesTaxus chinensisIncrease the production of taxol and taxol precursors.[23]
US6911338B2Muscodor sp.Cinnamomum zeylanicum, Grevillea pteridifoliaProduction of organic volatile antibiotics with activity on specific plant pathogens, bacteria, nematodes and insects.[24]
CN1850765AHalorosellinia sp.mangroveObtaining quinone compounds (6–7) with antitumor activity.[25]
US20060134762A1Fungal strain MTCC 5124Mappia sp.New source in the form of a novel endophytic fungal strain for the production of camptothecin (8) and camptothecinioids and an improved process for producing these.[26]
US7070985B2Muscodor albusCinnamomum zeylanicumNovel fungi and production of organic volatile antibiotics effective in the treatment of human and animal waste products.[27]
CN1896232AFusarium sp.Ginkgo bilobaProduction of plasmin.[28]
CN1948459ACladosporium sp.Parthenocissus tricuspidataeProduction of resveratrol (9).[29]
CN1951907AAspergillus nigerEuphorbia sp.Preparation of compound 2,3-diamino-6-hydroxy-benzoic acid-2-ethyl-hexyl ester (10), including method, and its application in pharmacy.[30]
CN101037656ATrichoderma harzianumIlex cornutaPreparation of the sesquiterpenoids trichotec-9-en-4-ol, 12, 13, epoxy-, and 4β-acetate (11) as pesticides.[31]
CN101041840ATrichoderma harzianumIlex cornutaPreparation of the sesquiterpenoids trichotec-9-en-4-ol, 12, 13, epoxy-, and 4β-acetate as pesticides.[32]
US7192939B2Pestalotiopsis microsporaTerminalia morobensisNovel fungi strains capable of producing novel antioxidant and antimycotic agents[33]
CN101195804AAcremonium endophytiumHuperzia serrataProduction of huperzine A (12) analogs through strain liquid fermentation of the endophytic fungi.[34]
CN101234951AAspergillus clavatonanicusmangroveProduction of biphenyl compound (13) including preparation method and application.[35]
CN101275116AMix of endophytesHuperzia serrataPreparation of huperzine A.[36]
CN101240249AFusarium sp.Dioscorea zingiberensisProduction of beauvericin (14) description of its antibacterial activity.[37]
CN101280279APhomopsis sp.Acer ginnalaProduction of gallic acid (15).[38]
US7341862B2Muscodor albusCinnamomum zeylanicumNovel fungi and production of organic volatile antibiotics effective in the treatment of human and animal waste products.[39]
CN101412971AFusarium sp.Paris polyphylla var. yunnanensisProduction of 5α, 8α-ergosterol peroxide-6, 22-diene-3β-ol (16), ergosterol-8(9), 22-diene-3β, 5α, 6β, 7α-tetraol (17), and succinic acid (18) as antimicrobial active ingredients.[40]
CN101468977APhomopsis sp.Azadirachta indicaNovel pseudo-phomallactone (19) antibacterial compound from fermentation products of an endophytic fungus strain.[41]
CN101468996APhomopsis sp.Azadirachta indicaSource of ten-membered lactone 7α-acetoxy-multiplolide A (20) and its applications.[42]
CN101481379AChaetomium globosumGinkgo bilobaObtaining chaetomugilin D (21) from an acetic acid ethyl ester extract of fermentation liquor.[43]
CN101486974AAspergillus nigerTaxus cuspidataProduction of taxol from endophytic fungus.[44]
CN101503658ANot disclosedLocoweedSeparation of an endophytic fungus producing swainsonine (22).[45]
CN101525611AFusarium sp.Chrysanthemum sp.Plasmin preparation.[46]
CN101586082AAspergillus candidusTaxus x mediaProduction of taxol. A method for preparing taxol is also given.[47]
US20090142816A1Gliocadium sp.Eucryphia cordifoliaProduction of volatile compounds and hydrocarbons to generate biofuels.[48]
CN101619291AChaetomium cupreumMacleaya cordataPreparation of 3,3′ 6,6′-tetrahydroxy-4,4′-dimethyl-1,1-bi(cyclohexa-3,6-diene)-2,2′,5,5′-tetraone (23) with antitumor properties.[49]
CN101669939ANot disclosedMangroveEnniatin compound (24) that aids in the preparation of anti-tubercle drugs.[50]
CN101701230AFusarium proliferatumMangroveImproving the output of anticancer anthraquinone compound (25) by utilizing different vaccination methods.[51]
CN101875905AShiraia bambusicolaPhyllostachys edulis seedHigh-yield hypocrellin-producing strain that carries out hypocrellin (26) production by fermentation.[52]
CN101914452APenicillium chrysogenumNot disclosedHuperzine A-producing strain.[53]
KR2010104252AScolecobasidium tshawytschaeSoybeanGibberellin (27) production using soybean endophyte.[54]
WO2010062159A1Aspergillus sp.Garcinia scortechiniiCyclic peptides with utility in anticancer treatments.[55]
CN101942393AShiraia sp.Huperzia serrataProduction of huperzine A.[56]
CN102080110ANot disclosedNothapodytes nimmonianaTechnical process for synthesizing a camptothecin sugar derivative.[57]
CN102080111ANot disclosedIcacinaceae plantMethod for endophyte induction to produce 10-hydroxy camptothecin (28).[58]
CN102080112ANot disclosedIcacinaceae plantMethod for endophyte induction to manufacture of 9-methoxycamptothecin (29).[59]
CN102154116APhomopsis wenchengensisNot disclosedManufacture of agricultural fungicide (30).[60]
CN102168017AColletotrichum gloeosporioidesHuperzia serrataHigh-producing strain and method for huperzine A production.[61]
CN102187870AAspergillus oryzaeRed algae Heterosiphonia sp.Use of diterpene alkaloid (31) secondary metabolites as pesticides.[62]
CN102190612AAspergillus oryzaeRed algaePreparation of diterpene alkaloid (32) with bacteriostatic activity that can be used for preparing antimicrobial agents.[63]
CN102190614AAspergillus oryzaeRed algae Heterosiphonia sp.Use of diterpenoid alkaloid (33) as an insecticide agent.[64]
CN102190698AAspergillus oryzaeMarine algaePreparation and application of alga endophytic fungi diterpenoid alkaloid compound (34).[65]
CN102191294AAcremonium endophytiumHuperzia serrataProduction of huperzine A as an anti-senile dementia pharmaceutical ingredient.[66]
CN102190699AAspergillus oryzaeMarine algaePreparation of a diterpene alkaloid-like compound (35) for use as an insecticide.[67]
CN102220247AVerticillium dahliaRadix glycyrrhizaeProduction of glycyrrhetic acid (36).[68]
IN2010DE00131AAspergillus elegansAsparagus racemosusProduction of antimicrobial and anticancer lactone metabolite, including an outline of the process.[69]
JP2011051953ADiaporthe sp.Curcuma sp.Manufacture of neohexa-hydro-curcumin (37).[70]
WO2011146634A1Hypoxylon sp./Nodulisporium sp./Daldinia sp./Muscodor sp.Persea indicaProduction of volatile organic compounds from these fungi.[71]
CA2766412A1Fungal endophytes of Pinus strobusPinus strobusAntifungal metabolites (38–44).[72]
CN102321545APenicillium steckiiTrypterigium wilfordiiProduction of triptolide (45).[73]
CN102417883APhomopsis sp.Camptotheca acuminataProduction and method for preparation of camptothecin.[74]
CN102464634ATrichoderma atrovirideCephalotaxus fortuneiNew compound (46) in secondary metabolites of C. fortunei endophytic fungi and its preparation method and application thereof.[75]
CN102559517AFusarium sp.Podophyllum hexadrumPreparation of podophyllotoxin.[76]
CN102586355AFusarium proliferatumMangroveMethod for producing anticancer anthraquinone compounds.[77]
CN102628018AAspergillus nigerSchisandra chinensisImproved production of the main components schisandrol A (47), schisantherin A (48), deoxyschizandrin (49), schisandrin B (50) from S. chinensis through fermentation.[78]
CN102633616AAlternaria sp.Sarcophyton sp.Preparation of the anthraquinone dimer alterporriol P (51) as an antineoplastic agent.[79]
CN102643167AAspergillus versicolorMarine algaeFermentation preparation and application as an antibacterial and insecticidal agent of albican-11,14-diol (52).[80]
CN102643186AAlternaria sp.Sarcophyton sp.Preparation of the anthraquinone dimers alterporriol Q (53) and alterporriol R (54) for antiviral drugs.[81]
CN102643755APenicillium chrysogenumGlycyrrhiza glabraEndophytic fungus that improves the content of glycyrrhetinic acid by fermenting licorice.[82]
CN102653720AColletotrichum gloeosporioidesHuperzia serrataEndophytic fungus capable of generating huperzine A.[83]
CN102660466AAspergillus penicillioidesSchisandra chinensisImproves the content of the active ingredients of S. chinensis: schizandrin, schisantherin, deoxyschizandrin, and schisandrin B.[84]
CN102660467AFusarium oxysporumGlycyrrhiza glabraFungal strain that produces glycyrrhetinic acid.[85]
CN102676392ATrichoderma atrovirideSalvia miltiorrhizaEndophytic fungus that aids in the production of tanshinone I (55) and tanshinone IIA (56).[86]
CN102701935ATrichoderma longibrachiatumSeaweedPreparation of tetranuclear diterpenoid (57) with pesticidal and bacteriostatic activity.[87]
CN102703327ACladosporium sp.Aconitum leucostomumFungal strain capable of synthesizing aconitine (58) for the preparation of antitumor, anti-inflammatory, and antirheumatic drugs.[88]
CN102719362AAlternaria sp.Merlot grapesFungal strain capable of producing a large amount of resveratrol in the fermentation process.[89]
CN102732427AFusarium proliferatumOxytropis glabraSeparation method for swainsonine-producing endophytic fungus.[90]
CN102732428AFusarium oxysporumCajanus cajanEndophytic fungal strain with a high yield of cajaninstilbene acid (59).[91]
CN102787077AAcremonium sp.Sophora alopecuroidesSynthesis of matrine (60).[92]
CN102807956ACeriporia lacerataCleistocalyx operculatusPreparation of 2′,4′-dihydroxy-6′-methoxyl-3′,5′-dimethylchalcone (61).[93]
WO2012020364A1Fungal strain MTCC 5544Pongamia pinnataDipeptide derivative (62) for the treatment of cancer.[94]
CN103073527APhomopsis sp.Illigera rhodanthaPreparation of libertellenone G (63) as a novel medicine for treating Alzheimer’s disease.[95]
CN103074236ATrichoderma atrovirideCamptotheca acuminataProduction and application of camptothecin.[96]
CN103083290ATrichoderma sp.Not disclosedTrichoderma acid (64) is involved in the preparation of antifungal agents.[97]
CN103087923AChaetomium globosumGinkgo bilobaThe endophytic fungus and metabolite flavipin (65) acts as an antioxidant.[98]
CN103103134AColletotrichum sp.Huperzia serrataProduction of huperzine A.[99]
CN103194502ANodulisporium sylviformeTaxus sp.Separation and purification of taxol by biological fermentation as well as precursors such as baccatin III (66) and cephalomannine (67).[100]
CN103288807ANot disclosedTrypterigium wilfordiiSeparation of alkaloids (68–70) with pharmaceutical application.[101]
CN103360351AXylaria sp.Azadirachta indicaObtaining three isopimarane diterpenoid compounds (71–73) with antifungal activity and potential applications in new agricultural or medical antifungal medicaments.[102]
CN103436451AColletotrichum sp.Cyclocarya paliurusProduction of haematochrome, including its production via a fermentation method.[103]
IN2011DE03381ADiaporthe sp.Pandanus amaryllifoliusAntitubercular diaportheone B analogs (74–75) and their synthesis.[104]
US20130137131A1Nodulisporium sp., Daldinia sp., Hypoxylon sp.Persea indicaSystem and method for producing volatile organic compounds[105]
US20130177596A1Colletotrichum sp.Pteromischum sp.Production of antifungal and immunosuppressive compounds[106]
US20130224315A1Muscodor strobelliNot disclosedProduction of volatile organic compounds and methods of use[107]
US20130252289A1Several fungi such as Nodulisporium sp., Hypoxylon sp., Annulohypoxylon sp., Daldinia sp., Xylaria sp.Thelypteris angustifolia, Persea indica, Citrus aurantifolia, Myroxylon balsamum, Taxodium distichumProduction of volatile organic compounds from microorganisms.[108]
US20130302480A1Muscodor crispansAnanas ananassoidesProduction of compounds with wide range of applications in agriculture, industrial, building, pharmaceutical and/or personal care products.[109]
WO2013164834A1Fusarium solaniTaxus celebicaCost-effective process for commercial production of paclitaxel.[110]
CN103570744AScopulariopsis sp.Carijoa sp.Preparation method for the quinazoline alkaloid compound (76) and its application as a tumor cell growth inhibitor.[111]
CN103627736AFungal strain L1 CGMCC No. 4558Polygonum cuspidatumExtraction of resveratrol from fermented liquor.[112]
CN103642864AShiraia bambusicolaHuperzia serrataPreparation of hypocrellin compounds.[113]
CN103667070ATrichoderma sp.Huperzia serrataPreparation and application of huperzine A.[114]
CN103667072ACeriporia lacerataHuperzia serrataPreparation of 8α, 15α-epoxy-huperzine A (77).[115]
CN103667073APeyronellaea glomerataHuperzia serrataPreparation of pyrrole type (78) liver-protecting medicines.[116]
CN103820331ACeriporia lacerata/Hypoxylon investiensPhlegmariurus sp.Production of huperzine A.[117]
CN103820332APycnoporus sanguineusHuperzia serrataProduction of huperzine A.[118]
CN103911293ABotryosphaeria dothideaTaxus chinensisStrain with a high paclitaxel yield and method for producing paclitaxel.[119]
CN103966109AAspergillus fumigatusSchisandra chinensis fruitEndophytic fungus that is capable of producing protocatechuic aldehyde (79).[120]
CN104031948ADaldinia eschscholziiGracilaria sp.Production of dalesconol A (80) and B (81) as immunosuppressive compounds.[121]
CN104059044ATrichoderma sp./Penicillium sp.MangrovePreparation of a xanthone derivative (82) as a microbial pesticide and fungicide.[122]
CN104073529ANot disclosedTaxus x media seedProduction of taxol.[123]
CN104086522ALasiodiplodia pseudotheobromaeCamptotheca acuminataPreparation of a spiro-dinaphthalene compound (83).[124]
CN104109691ANot disclosedGinkgo bilobaPreparation and dyeing of red pigment haematochrome.[125]
US20140082771A1Nodulosporium spp. or Ascocoryne spp.Lomatia fraseri or Nothofagus cunninghamiiIsolation of antibiotic compound.[126]
CN104293678ACladosporium cladosporioidesForsythia sp.Production of forsythoside A (84), forsythoside B (85), and forsythin (86) and their applications.[127]
CN104357525AAcremonium
dichromosporum
Glycyrrhiza sp.Production of glycyrrhetinic acid by using microbial fermentation.[128]
CN104450528ANot disclosedGardenia jasminoidesMethod for isolation and screening of endophytic fungi and for large-scale preparation of high-purity genipin (87).[129]
CN104450531AFusarium tricinctumFritillaria cirrhosaObtains peiminine (88) and peimisine (89) alkaloids.[130]
CN104593443ABotryosphaeria rhodinaAquilaria sinensisPreparation of agilawood chromone (90–94) components.[131]
CN104726345AMixtures of fungi including Gliocladium sp.Taxus spp.High production of baccatin III.[132]
CN104762348ANot disclosedGastrodia elata/Armillaria melleaPreparation of gastrodin (95).[133]
CN104774774AAspergillus fumigatusGlycyrrhiza sp.Production of pseutorin A (96) as a food preservative.[134]
CN104789613AAlternaria sp.Spiraea salicifoliaExtraction and separation of bacteriostatic component (97) from fermentation broth.[135]
CN104805017AFusarium solaniPinellia sp.Generation and application of β-glucosidase.[136]
CN104877910AEupenicillium brefeldianumNot disclosedPreparation of brefeldin A (98). The compound has antifungal and insecticide activity and is an ideal veterinary and agriculture candidate drug.[137]
CN105039173AMortierella sp.Huperzia serrataFungal strain with a high huperzine A content.[138]
CN105039174AFusarium sp.Paeonia sp.Production of paeonol (99).[139]
CN105039175ATalaromyces sp.Paeonia sp.Production of paeonol.[140]
CN105039176AFusarium sp.Paeonia sp.Production of paeonol.[141]
CN105200091AGeomyces sp.Nerium indicumProduction and application of ethyl vincamine (100).[142]
US20150073048A1Muscodor sp.Ananas ananassoidesProduction of antimicrobial composition and methods of use[143]
WO2015029069A1Trichoderma longibrachiatumBoswellia serrataProduction of brachiatin D (101).[144]
CN105238697AChaetomium sp.Paeonia sp.Production of paeonol with endophytic fungus from peony.[145]
CN105238700AEpicoccum nigrumWild soybeanHigh-yielding oleanolic acid endophyte.[146]
CN105274005AAspergillus fumigatusTaxus x mediaTaxol production.[147]
CN105316238ATrichoderma sp.Taxus chinensisMethod for culturing and screening taxol-producing fungus.[148]
CN105349431APhoma glomerataSalvia miltiorrhizaGeneration and application of salvianolic acid C (102).[149]
CN105400842AFusarium maireiTaxus x media/Valeriana jatamansiIncreases the yield of paclitaxel in an endophytic fungus fermentation product.[150]
CN105505798APhoma glomerataSalvia miltiorrhizaGeneration of ergosterol (103).[151]
CN105506021AAspergillus sp.Not disclosedPreparation of taxol-containing culture.[152]
CN105670940AMucor racemosusHuperzia serrataApplication of a fungal strain with highly efficient expression of huperzine A.[153]
CN105838613AChaetomium globosumCajanus cajanApplication of a fungal strain with a high yield of flavipin.[154]
CN105925646APhomopsis liquidambariMangrovePreparation method for cytochalasin H (104).[155]
CN106010980AParaconiothyrium brasilienseAcrida cinereaStrain capable of producing of perlolyrine (105) and a method for preparation.[156]
CN106047715ATrichoderma sp.Nothapodytes pittosporoidesExtraction of camptothecin.[157]
WO2016034751A1Guignardia mangiferaePersea indicaBiocidal products (106) that are used to control phytopathogens and pest organisms.[158]
CN106432168APenicillium citrinumBruguiera sexangula var. rhynchopetalaPreparation of isocoumarins (107–113) as antibacterial drugs.[159]
CN106434361AAscomycota sp.MangrovePreparation of indanone derivatives (114–115).[160]
CN106497803AFusarium verticillioidesHuperzia serrataFungal strain with huperzine A-producing function and its use in the biosynthesis of medicine for treating Alzheimer´s disease and vascular dementia.[161]
CN106497804AFusarium oxysporumHuperzia serrataProduction of huperzine A and its application in the treatment of dementia.[162]
CN106588944ANeonectria sp.Meconopsis grandisPreparation of compound (116) derived from Tibetan medicine endophytic fungi.[163]
CN106636247ANot disclosedMelia azedarachFermentation extraction of azadirachtin (117).[164]
CN106701594ANeocosmospora sp.Meconopsis grandisProduction of pyrrocidine A (118) and pyrrocidine B (119).[165]
CN106946955APezicula sp.Taxodium distichumProduction of mycotrisaccharide compounds (120–124) that aid in the preparation of drugs for preventing and controlling plant fungal disease.[166]
CN106967622AAspergillus flavusTorreya fargesiiPaclitaxel production.[167]
CN106967623AAspergillus nigerTorreya sp.Production of the taxane compound baccatin III.[168]
CN106978356ANigrospora sphaericaArtemisia argyiPreparation of large amounts of bostrycin (125).[169]
CN107034145APestalotiopsis vismiaeCordyceps sinensisIn vitro production of nucleosides, preferably, adenosine, guanylyl, uridine, and inosine.[170]
CN107058118AAspergillus aculeatusTaxus x mediaEfficient taxol-producing endophytic fungus.[171]
CN107118972AEpicoccum nigrumSolidago canadensisEndophytic fungus capable of generating pectin through liquid fermentation.[172]
CN107129936APenicillium sp.Torreya fargesiiProduction of paclitaxel.[173]
CN107254504AFusarium sp./Bacillus aryabhattaiErigeron breviscapusIncreasing the scutellarin (126) content with microbial agents.[174]
CN107354182APurpureocillium lilacinumGrey green soy beanPreparation of (R)-4-benzyl-2-oxazolidinone (127) by fermentation.[175]
WO2017049353A1Daldinia sp.Pittosporum bicolorProduction of volatile organic compounds as insecticidal and antifungal agents.[176]
WO2017068223A1Stemphylium solaniArtemisia absinthiumTo obtain compounds (128–129) for use as biocides.[177]
CN107686817AAscomycota sp.Fetid marsh fleabaneProduction of ascomylactam compounds (130–131).[178]
CN107723245AFusarium sp.Liriope spicata var. proliferaEndophytic fungi and application in the steroids saponin diosgenin (132) and ruscogenin (133).[179]
CN107723246APenicillium oxalicumLiriope spicata var. proliferaEndophytic fungi and application in the steroid saponin diosgenin and ruscogenin.[180]
CN107723247ACladosporium sp.Liriope spicata var. proliferaEndophytic fungi and application in the steroid saponin diosgenin and ruscogenin.[181]
CN107723248APenicillium sp.Liriope spicata var. proliferaEndophytic fungi and application in the steroid saponin diosgenin and ruscogenin.[182]
CN107739716APenicillium sp.Liriope spicata var. proliferaEndophytic fungi and application in the steroid saponin diosgenin and ruscogenin.[183]
CN107739717ASchizophyllum sp.Liriope spicata var. proliferaEndophytic fungi and application in the steroid saponin diosgenin and ruscogenin.[184]
CN107739718AAspergillus sp.Liriope spicata var. proliferaApplication in the preparation of the steroid saponin diosgenin and ruscogenin.[185]
CN107868757ABjerkandera adustaNot disclosedPreparation of 8α, 15α-epoxy-huperzine A, which has a curative neuroprotective effect.[186]
CN107955793AAspergillus nigerLiriope spicata var. proliferaPreparation of the steroid saponin.[187]
CN108264473APenicillium decumbensNot disclosedPreparation and application of 1-aniline-2-pyrrolidone class compounds (134–135).[188]
CN108277164ADiaporthe sp.Excoecaria agallochaIndene derivative (136) that aids in the preparation of an anti-inflammatory drug[189]
CN108383811AAspergillus tubingensisDecaisnea fargesiiProduction of furanone (137) derivative with good antibacterial activity.[190]
CN108467398ATrichoderma asperellumSeaweedPreparation of diketopiperazine compound (138), which has antibacterial application.[191]
CN108503616AAspergillus tubingensisDecaisnea fargesiiExtraction method and application of a bicoumarin derivative (139).[192]
CN108640897ADaldinia eschscholtziiMangrovePreparation and application of polyketides (140–141).[193]
CN108728367APhoma sp.Coral gorgonian sourcePreparation of antibacterial compounds (142–143).[194]
CN108913731APestalotiopsis sp.Rhizophora stylosaPreparation and application of pestalotiopyrone M (144) which has immunosuppressive activity.[195]
CN109082445AFusarium proliferatumGinkgo sp.Production and application of glycine (145), betaine (146), scopoletin (147), yagaine, rosmarinic acid (148), oxipurinol (149), resveratrol, naringenin (150), catechin (151), taxifolin (152), and xanthohumol (153), which have antibacterial properties.[196]
CN109096056AAspergillus flavusKandelia obovataPreparation of bisabolane sesquiterpene compounds (154-155) as anti-type II diabetes mellitus drugs.[197]
IN201641023516APhomopsis sp.Gloriosa superbaMethod of producing colchicine (156) from an endophyte using epigenetic modifiers.[198]
IN201721003140APhoma sp.Litsea glutinosaIsolation, fermentation, purification, and characterization of the antibacterial compound 2’-hydroxygenistein (157).[199]
CN109111422APenicillium sp.Panax notoginsengMacrolide compounds (158–167) and their application in the prevention and treatment of plant-pathogenic bacteria.[200]
CN109180635AXylaria curtaSolanum tuberosumPreparation and application of compound E1011 (168).[201]
CN109206337AFusarium sp.Santalum albumMethod for preparation of hexichol phenolic acid compounds (169–171) and their application in the preparation of antibacterial compounds.[202]
CN109232481ANot disclosedTaxus chinensisPreparation of high-purity taxol.[203]
CN109234175AFusarium oxysporumParis polyphyllaProduction of chonglou saponin (172–175).[204]
CN109265397ALophiostoma sp.Eucalyptus exsertaFast separating process of fungal secondary metabolites (176–177).[205]
CN109293494ATalaromyces sp.MangroveMethod for preparation of 1, 4-naphtoquinone compounds (178–179) and their application in the preparation of anti-inflammatory drugs.[206]
CN109439705AAspergillus sp.Soft coralMicrobe preparation of subergorgic acid (180).[207]
CN109456191ACerrena sp.Pogostemon cablinPreparation of cerrenin D (181) that is applied in the preparation of antitumor drugs.[208]
CN109456899APenicillium notatumGastrodia elataFermentation and production of penicillic acid (182).[209]
CN109486685APenicillium sp.MangrovePreparation of anti-insect activity terpenes (183–184) as crystalline compounds.[210]
CN109503414ATrichoderma asperellumSeaweedPreparation of one kind of alkane sesquiterpene derivative (185).[211]
CN109503428ATrichoderma asperellumSeaweedPreparation of a cyclonerolane-type hydroxamic acid derivative (186).[212]
CN109503535ATrichoderma asperellumSeaweedPreparation of a bicyclic cyclonerolane type sesquiterpene derivative (187).[213]
CN109503623ATrichoderma koningiopsisMorinda officinalisPreparation and application of guanacaste class compounds (188–189) in the preparation of antibacterial compounds.[214]
CN109553600APenicillium sp.MangrovePreparation and application of isocoumarin class compounds (190–197).[215]
CN109651125AFungal strain ZJY1288 GDMCC No. 60290MangrovePreparation and application of anthraquinone metabolites (198–199)[216]
CN109776561ACytospora rhizophoraeMorinda officinalisPreparation of cytorhizin B (200) and C (201) that are applied in the preparation of antitumor drugs.[217]
CN109810906ABionectria pityrodesTamarix sp.Preparation of phenolic acid compound (202) through fermentation.[218]
CN109956883ATrichoderma asperellumSeaweedPreparation of an azo-cyclo alkane type sesquiterpene derivative (203) produced through an acetylation method.[219]
CN109971652AOnygenales sp.Incarvillea younghusbandiiPreparation of gymnoascolide A (204) in preparing anti-inflammatory drugs.[220]
CN109971651AArthrinium arundinisTobaccoPreparation of 5, 8-peroxyde of ergosterol.[221]
CN109971655AChaetomium sp.Radix astragaliProduction of differanisole A (205).[222]
CN109988181ABipolaris sp.Lycium barbarumPreparation of bipolahydroquinone C (206) that is used as an antineoplastic drug for treating human pulmonary squamous carcinoma and breast carcinoma.[223]
CN110093383AAlternaria sp.Polygonum senegalensePreparation of compound alterlactone (207) that is used as a disinfectant in agriculture.[224]
CN110218200APseudopithomyces sp.Sonneratia caseolarisPreparation of depsipeptide compound (208).[225]
CN110229127Afungal strain TGM112 CGMCC No. 16499MangrovePreparation of butyrolactone compounds (209–211).[226]
CN110257255ADaldinia eschscholtziiMangrovePreparation of chromone derivatives (212–216).[227]
CN110257260ABoeremia exiguaAtractylodis macrocephalaePreparation of the Atractylodes lactones I (217) and II (218).[228]
CN110272828AColletotrichum boninenseHuperzia serrataNew microbe resource for the production of huperzine A industrial fermentation.[229]
CN110283728ADaldinia eschscholtziiMangrovePreparation of tetralone derivatives (219–223).[230]
CN110295116AAspergillus sp.Tamarix sp.Production of a variety of fatty acids and their application.[231]
CN110302215APenicillium sp.Taxus x mediaFungal crude extract, it‘s applications, e.g., as being a source of paclitaxel analog.[232]
CN110438015AAspergillus tamariiCitron orange fruitFungal strain its fermentation to produce hesperidinase.[233]
CN110484588AAcremonium pilosumMahonia sp.Preparation of fusidic acid (224).[234]
CN110511876AIlyonectria cyclaminicolaKorean Epimedium herbThe culture method of this fungal strain and its metabolites epimedins A–C (225–227).[235]
CN110563740AAspergillus fumigatus/Fusarium oxysporumEdgeworthia chrysantha/Stachys japonicaMethods for preparation and application of alpha-pyrone (228).[236]
IN201721002537AAspergillus japonicusAchryranthes asperaProduction of the novel antibacterial compound fraxidin (229).[237]
1 Some patents just provided a common name for the host organism.
Table 2. Endophytic fungi applied for biotransformation.
Table 2. Endophytic fungi applied for biotransformation.
Patent No.EndophyteHost 1Patent DetailsRef.
CN102080048AAbsidia glaucagingsenConversion of ginsenoside Rb1 (230) to prepare ginsenoside Rd (231).[245]
CN102080049AZygorhynchus moelleriPanax gingsenPreparation of ginsenoside Rd from ginsenoside Rb1.[246]
CN102154123AFusarium sp.Dioscorea nipponicaBiotransformation conversion conditions of diosgenin saponins.[247]
CN102199548APenicillium oxalicumPolygonun cuspidatumMicrobial transformation of resveratrol from polydatin (232).[248]
CN102212486APenicillium oxalicumPolygonun cuspidatumConversion of polydatin into resveratrol.[249]
CN102392050APenicillium sp.Not disclosedBiotransformation of raisin extract. Preparation and application in flavoring.[250]
CN102757443ASeveral endophytes featuring Penicillium purpurogenumDysosma sp. or Sabina vulgarisSeparation and purification method for bioconversion of podophyllotoxin into sulfur-substituted derivatives.[251]
CN103695478Afungal strain L1 CGMCC No. 4558Not disclosedConversion of polydatin to resveratrol.[252]
CN103981104AMicrosphaeropsis arundiniswild riceBiotransformation of glycyrrhizinic acid (233) into liquiritin (234).[253]
CN103992953AAspergillus flavuswild riceTransform glycyrrhizic acid into glycyrrhetinic acid monoglucuronide (235).[254]
CN106591142AXylariales sp.Not disclosedConversion of Panax notoginseng saponin to prepare vina-ginsenoside R13 (236), notoginsenoside J (237) and American saponin ginseng L16 (238).[255]
CN106701604AChaetomium globosumwild riceConversion of glycyrrhizic acid into glycyrrhetinic acid monoglucuronide.[256]
CN106893677AFusarium sp.Herba AndrographitisTransformation of andrographolide diterpenoids (239–242).[257]
CN107034253AFusarium oxysporumGentiana sp.Conversion of gentiopicroside (243) into two separate compounds with hepatoprotective activity.[258]
CN107312720AFusarium proliferatumCajanus cajanConversion of ginsenoside Rb1 into ginsenoside Rd and its application.[259]
CN108707553APlectosphaerella cucumerinaHuperzia serrataEfficient conversion of androstenedione to testolactone and androstane diene diketone.[260]
CN109536561AFusarium oxysporumgingsenConversion of ginsenoside Rb1 into the rare ginsenoside CK (244).[261]
CN110527632APhomopsis sp.Not disclosedBioconversion of betulinic acid (245).[262]
CN110423697ALasiodiplodia pseudotheobromaeIllicium verumtrans-trans-Anethole (246) conversion to generate different vanillic acids (247).[263]
US20190264295A1Ovatospora brasiliensisCurcuma sp.Microbial bioconversion of curcuminoids to calebin A (248).[264]
WO2019070219A2Alternaria eureka/Neosartorya hiratsukae/Camarosporium laburnicolaAstragalus condensatus, A. angustifoliusProduction of a telomerase activator, biotransformation with endophytic fungi to obtain new/novel molecules from the saponins from natural sources and method for discovery molecules that increase telomerase enzyme activation.[265]
1 Some patents just provided a common name for the host organism.

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MDPI and ACS Style

Torres-Mendoza, D.; Ortega, H.E.; Cubilla-Rios, L. Patents on Endophytic Fungi Related to Secondary Metabolites and Biotransformation Applications. J. Fungi 2020, 6, 58. https://doi.org/10.3390/jof6020058

AMA Style

Torres-Mendoza D, Ortega HE, Cubilla-Rios L. Patents on Endophytic Fungi Related to Secondary Metabolites and Biotransformation Applications. Journal of Fungi. 2020; 6(2):58. https://doi.org/10.3390/jof6020058

Chicago/Turabian Style

Torres-Mendoza, Daniel, Humberto E. Ortega, and Luis Cubilla-Rios. 2020. "Patents on Endophytic Fungi Related to Secondary Metabolites and Biotransformation Applications" Journal of Fungi 6, no. 2: 58. https://doi.org/10.3390/jof6020058

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