Rust Fungi on Medicinal Plants in Guizhou Province with Descriptions of Three New Species
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collections
2.2. Morphology
2.3. DNA Extraction, Polymerase Chain Reaction (PCR), and Sequencing
2.4. Phylogenetic Studies
3. Results
Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Family Name | Species | Specimen No. | Host | Province, Country | GenBank Accession No. | Reference | |
---|---|---|---|---|---|---|---|
ITS | LSU | ||||||
Chrysomyxaceae | Chrysomyxa empetri | QFB 25015 | Empetrum nigrum | Ste-Anne-des-Monts, Quebec, Canada | GU049434 | GU049526 | [36] |
Rossmanomyces monesis | DAOM 221982 | Moneses (=Pyrola) uniflora | Graham Island, British Columbia, Canada | GU049476 | GU049547 | [36] | |
Gymnosporangiaceae | Gymnosporangium asiaticum | CUP-0016 | Juniperus chinensis | Gifu prefecture, Japan | MN642593 | MN642617 | [37] |
Gymnosporangium clavariiforme | BRIP 59471 | Crataegus sp. | — | — | MW049261 | [10] | |
Gymnosporangium confusum | LD 1021 | Crataegus monogyna | Turkey | HM114219 | HM114219 | — | |
Gymnosporangium cupressi | RSP9998 | — | — | KJ720169 | KJ720169 | — | |
Gymnosporangium juniperi-virginianae | MCA3585 | Cupressaceae juniperus | Virginia, America | — | MG907217 | [10] | |
Gymnosporangium sabinae | TNM F0030477 | Pyrus communis | Bulgaria: Sofia | KY964764 | KY964764 | [38] | |
Gymnosporangium trachysorum | RN91 | — | — | KJ720184 | KJ720184 | — | |
Hyalopsoraceae | Coleopuccinia sinensis | BJFC:R02506 | Cotoneaster microphyllus | China | — | MF802285 | [39] |
Hyalopsora aspidiotus | PUR N4641 | Gymnocarpium dryopteris | China | — | MW049264 | [40] | |
Melampsoridium alni | H 7019539 | Alnus mandshurica | Finland | KF031557 | KF031534 | [41] | |
Melampsoridium betulinum | BPI 871107 (MCA2884) | Alnus sp. | Costa Rica | — | DQ354561 | [8] | |
Melampsoridium hiratsukanum | PDR #1480181 | Alnus rhombifolia | USA: Santa Cruz County, California | KC313888 | KC313888 | [42] | |
Melampsoridium carpini | KR-M-0048587 | Carpinus betulus | — | MH908486 | MH908486 | [43] | |
Melampsoridium carpini | GMB0112 | Carpinus turczaninowii | Guizhou, China | OQ067091 | — | This study | |
Melampsoraceae | Melampsora abietis-canadensis | 1399MEA-POG-USA | Populus grandidentata | Wisconsin, America | JN881733 | JN934918 | [44] |
Melampsora abietis-populi | TSH-R20042 * | Populus yunnanensis | Yunnan, China | JN881739 | JN934933 | [44] | |
Melampsora apocyni | LYR3 | Apocynum venetum | Xinjiang, China | KR296802 | KR296803 | — | |
Melampsora caprearum | NYS-F-003819 | Salix caprea | Germany | KU550034 | KU550033 | [45] | |
Melampsora coleosporioides | HNMAP3114 | Salix sp. | Japan | KF780755 | KF780638 | [46] | |
Melampsora epiphylla | TSH-R3884 | Salix bakko | Japan | KF780787 | KF780670 | [45] | |
Melampsora epitea | TNS-F-121034 | Salix viminalis | Germany | KX386070 | KX386097 | [35] | |
Melampsora euphorbiae | HMAS350000 | Euphorbia kansui | Guangxi, China | MK518875 | MK518545 | [11] | |
Melampsora euphorbiae | BRIP 39560 | Euphorbia peplus | Queensland, Australia | — | EF192199 | [40] | |
Melampsora euphorbiae | BPI 871135 (U681) | Euphorbia heterophylla | Oman | — | DQ351722 | [47] | |
Melampsora humilis | TSH-R7550 | Salix koriyanagi | Miyagi, Japan | KF780812 | — | [46] | |
Melampsora hyperici-sampsonii | HMAS350001 * | Hypericum sampsonii | Guangxi, China | MK518877 | MK518547 | [11] | |
Melampsora iranica | HMAAC4055 | Salix sp. | China | MK372158 | MK372191 | [48] | |
Melampsora kamikotica | HNMAP3186 | Chosenia arbutifolia | China | KF780760 | KF780643 | [46] | |
Melampsora laricis-pentandrae | HNMAP3201 | Salix pentandra | Inner Mongolia, China | KF780801 | KF780684 | [46] | |
Melampsora laricis-populina | HMAS247977 | Populus simonii | Haixi Qinghai, China | MK028583 | MK064524 | [49] | |
Melampsora laricis-populina | GMB0097 | Populus lasiocarpa | Guizhou, China | OQ067085 | — | This study | |
Melampsora larici-tremulae | PFH04-5 | Populus tremula | France | JN881744 | JN934956 | [44] | |
Melampsora medusae | BPI 0021209 | — | America | JX416848 | JX416843 | [44] | |
Melampsora medusae f.sp. deltoidis | 98D10 | Populus × euramericana | South Africa | GQ479307 | JN934962 | [44] | |
Melampsora medusae f.sp. tremuloidis | 1028ME-LAL-LJ | Larix laricina | Quebec, Lac Saint Jean, Peribonka, Canada | GQ479883 | JN934965 | [44] | |
Melampsora microsora | TSH-R7335 | Salix subfragilis | Hiroshima, Japan | KF780833 | KF780730 | [46] | |
Melampsora microspora | PUR:F17540 | populus nigra | Iraq | JN881737 | JN934931 | [44] | |
Melampsora occidentalis | MO96H | Populus trichocarpa | Idaho, America | JN881740 | JN934934 | [44] | |
Melampsora pakistanica | BA13c | Euphorbia helioscopia | Pakistan | KX237555 | KX237556 | [50] | |
Melampsora populnea | 664ME-POA-BC45.1 | Populus alba | British Columbia, Canada | EU808021 | FJ666510 | [51] | |
Melampsora populnea | 97MP10 | — | France | EU808035 | FJ666523 | [51] | |
Melampsora populnea | AAH00-1 | Populus alba | England | AY444772 | AY444786 | [52] | |
Melampsora pruinosae | BPI 1109446 | Populus diversifolia | Xinjiang Uygur Zizhiqu, Shule, China | GQ479899 | JN934938 | [44] | |
Melampsora pulcherrima | O8ZK4 | Mercurialis annua | Italy | GQ479320 | JN934941 | [44] | |
Melampsora ribesii-purpureae | PURP897-1 | Salix purpurea | — | AY444770 | AY444791 | [52] | |
Melampsora euphorbiae | PDD 98363 | Ricinus communis | — | — | KJ716352 | [36] | |
Melampsora rostrupii | 01G1.1 | Mercurialis perennis | France | EU808038 | JN934942 | [44] | |
Melampsora salicis-albae | NWC-06210 | Salix alba | Rothamsted, England | KF780757 | KF780640 | [46] | |
Melampsora salicis-argyraceae | HMAS52894 * | Salix argyracea | Xinjiang, China | KF780733 | KF780616 | [46] | |
Melampsora salicis-bakko | TSH-R3879 * | Salix bakko | — | KC631854 | KC685611 | [45] | |
Melampsora salicis-cavaleriei | HMAAC4043 | Salix serrulatifolia | China | MK277296 | MK277301 | [48] | |
Melampsora salicis-delavayanae | HMAS248120 * | Salix delavayana | Yunnan, China | MK518954 | MK518651 | [11] | |
Melampsora salicis-purpureae | HMAS62584 * | Salix purpurea | Shandong, China | KF780766 | KF780649 | [46] | |
Melampsora salicis-viminalis | HMAS38658 * | Salix viminalis | Tibet, China | KF780732 | KF780615 | [46] | |
Melampsora sp. | HMAS350003 | Xinjiang, China | MK518844 | MK518499 | [11] | ||
Neophysopellaceae | Neophysopella ampelopsidis | IBA-8618 | Ampelopsis brevipedunculata | Kagoshima, Japan | AB354774 | AB354741 | [11] |
Neophysopella ampelopsidis | GMB0110 | Ampelopsis sinica | Guizhou, China | OQ067090 | — | This study | |
Neophysopella meliosmae | IBAR-10037 | Meliosma myriantha | Ibaraki, Japan | KC815591 | KC815650 | [53] | |
Neophysopella meliosmae-myrianthae | AGLR56 | — | — | MK290819 | MK290819 | — | |
Neophysopella meliosmae-myrianthae | IBA-8584 | Vitis coignetiae | Tochigi, Japan | AB354785 | AB354748 | [53] | |
Neophysopella orientalis | IBAR-9942 | Meliosma tenuis | Tochigi, Japan | KC815597 | KC815656 | [54] | |
Neophysopella vitis-davidii | HMAS350005 | Viola faurieana | Chongqing, China | MK518870 | MK518536 | [11] | |
Neophysopella vitis-davidii | HMAS248115 * | Vitis davidii | Yunnan, China | — | MK518593 | [11] | |
Phakopsoraceae | Masseeëlla capparis | RIP 56844 | Flueggea virosa | Northern Territory, Australia | JX136798 | JX136798 | [13] |
Nothoravenelia japonica | HMJAU8598 | — | China | — | MK296509 | — | |
Phakopsora argentinensis | ZT:RB 8248 | Croton cf. anisodontus | — | KF528009 | KF528009 | [55] | |
Phakopsora crcis-filii | ZT Myc 48990 | Annona paludosa | Sinnamary, French Guiana | KF528016 | KF528016 | [55] | |
Phakopsora myrtacearum | PREM 61155 * | Eucalyptus grandis | Maragua, Kenya | NR_132913 | KP729473 | [56] | |
Phakopsora neocherimoliae | RB 3096 in ZT | Annona cherimola | San José Costa Rica | KF528011 | KF528011 | [55] | |
Phakopsora pachyrhizi | BRIP 56941 | Neonotonia wightii | Warrumbungle, New South Wales, Australia | — | KP729475 | [56] | |
Phakopsora phyllanthi | RB 8581 | Phyllanthus acidus | Ceará, Brazil | KF528025 | KF528025 | [55] | |
Phakopsora pistila | ZT Myc 48992 | Annona sericea | French GuianaIracubo, French Guiana | KF528026 | KF528026 | [55] | |
Phakopsora sophorae | HMAS248098 * | Leptopus chinensis | Beijing, China | — | MK518628 | [11] | |
Phragmidiaceae | Arthuriomyces peckianus | BPI 879271 | Rubus occidentalis | New York, America | GU058010 | GU058010 | [57] |
Gerwasia pittieriana | BPI 843556 | Rubus sp. | — | KY764065 | KY764065 | — | |
Gerwasia rubi | HMAS249978 | Rubus parkeri | Yunnan, China | MK519039 | MK518737 | [11] | |
Gerwasia rubi | HMAS249983 | Rubus setchuenensis | Fujian, China | — | MK518734 | [11] | |
Gerwasia rubi | BRIP:58369 | Rubus sp. | — | — | KT199397 | [13] | |
Gerwasia rubi-playfairiani | HMAS249840 * | Rubus playfairianus | Guangxi, China | MK518976 | — | [11] | |
Hamaspora acutissima | BRIP:55606 | Rubus rolfei | Philippines | — | KT199398 | [13] | |
Hamaspora rubi-alceifolii | GMB0116 | Rubus alceaefolius | Guizhou, China | — | OQ067533 | This study | |
Hamaspora rubi-alceifolii | GMB0109 * | Rubus alceaefolius | Guizhou, China | — | OQ067532 | This study | |
Hamaspora longissima | BPI 871506 | Rubus rigidus | Eastern Cape, South Africa | — | MW049262 | [40] | |
Hamaspora sinica | HMAS249989 | Rubus setchuenensis | Guangdong, China | MK519049 | MK518636 | [11] | |
Kuehneola japonica | BPI 910185 | Rosa sp. | — | KY764067 | — | — | |
Kuehneola uredinis | LD1029 | Rubus sp. | New York, America | GU058013 | GU058013 | [57] | |
Kuehneola uredinis | R216 | Rubus fruticosus | Belgium | EU014068 | EU014068 | [58] | |
Phragmidium andersonii | HMAS53231 | Potentilla fruticosa | China | — | MG669120 | [59] | |
Phragmidium barclayi | HMAS67281 | Rubus austrotibetanus | China | — | MG669117 | [59] | |
Phragmidium barnardii | BRIP:56945 | Rubus multibracteatus | Queensland, Australia: | — | KT199402 | [13] | |
Phragmidium biloculare | U564 | Potentilla flabellifolia | Washington, America | — | JF907670 | [60] | |
Phragmidium brevipedicellatum | HMUT100463 | Potentilla multifida | Xinjiang, China | — | KU059170 | — | |
Phragmidium butleri | HMAS67841 | Rosa macrophylla | China | — | MG669118 | [59] | |
Phragmidium chayuensis | BJFC:R02532 * | Rosa duplicata | China | MH128374 | NG_064492 | [59] | |
Phragmidium cibanum | BJFC:R02528 * | Rubus niveus | China | MH128370 | NG_064491 | [59] | |
Phragmidium cymosum | GMB0115 | Rosa cymosa | Guizhou, China | OQ067097 | OQ067531 | This study | |
Phragmidium cymosum | GMB0108 * | Rosa cymosa | Guizhou, China | OQ067096 | OQ067530 | This study | |
Phragmidium duchesnea-indica | HMAS249846 * | Duchesnea indica | Yunnan, China | — | MK518681 | [11] | |
Phragmidium fragariae | WM 1317 | Potentilla sterilis | — | — | AF426217 | [61] | |
Phragmidium fructigenum | HMUT100472 | Rosa glomerata | Chongqing, China | — | KU059168 | — | |
Phragmidium fusiforme | BJFC:R00942 | Rosa hugonis | China | — | KP407632 | [62] | |
Phragmidium griseum | HMAS56906 | Rubus crataegifolius | Beijing, China | MH128377 | MG669115 | [59] | |
Phragmidium griseum | HMAS350016 | Rosa sp. | Beijing, China | — | MK518530 | [11] | |
Phragmidium handelii | BJFC:R01030 | Rosa webbiana | China | — | KP407631 | [62] | |
Phragmidium ivesiae | U35 | Potentilla gracilis | Utah, America | — | JF907672 | [60] | |
Phragmidium japonicum | HMAS41585 | Rosa laevigata | Fujian, China | MN264716 | MN264734 | [63] | |
Phragmidium jiangxiense | BJFCR 03453 * | Rosa laevigata | Jiangxi, China | MN264715 | MN264733 | [63] | |
Phragmidium kanasense | HMAS248114 * | Rosa fedtschenkoana | Xinjiang, China | — | MK518464 | [11] | |
Phragmidium leucoaecium | BJFCR 02118 * | Rosa sp. | Yunnan, China | MN264719 | MN264737 | [63] | |
Phragmidium mexicanum | HMAS350019 | Phoenix acaulis | Yunnan, China | MK518980 | MK518678 | [11] | |
Phragmidium mexicanum | HMAS350020 | Duchesnea indica | Yunnan, China | MK518982 | MK518680 | [11] | |
Phragmidium mexicanum | MCA2496 | Potentilla indica | Maryland, America | — | JF907660 | [60] | |
Phragmidium montivagum | FO 47828 | Rosa cf. woodsii | — | — | AF426213 | [61] | |
Phragmidium mucronatum | U-671 | Rosa sp. | Oman | — | HQ412646 | [64] | |
Phragmidium mucronatum | BRIP:60097 | Rosa rubiginosa | — | — | MW049275 | [40] | |
Phragmidium nambuanum | HMUT100465 | Rubus innominatus | Chongqing, China | — | KU059165 | — | |
Phragmidium octoloculare | HMAS140416 | Rubus biflorus | China | MH128376 | MG669119 | [59] | |
Phragmidium pauciloculare | HMUT100466 | Rubus innominatus | Chongqing, China | — | KU059162 | — | |
Phragmidium pauciloculare | HMAS350023 | Rubus corchorifolius | Guangxi, China | MK518874 | MK518542 | [11] | |
Phragmidium potentillae | BRIP:60089 | Acaena novae-zelandiae | Tasmania, Australia | — | KT199403 | [13] | |
Phragmidium potentillae-canadensis | MCA2858 | Potentilla sp. | New York, America | — | JF907666 | [60] | |
Phragmidium punjabense | BA65A * | Rosa sp. | Murree, Ghora Gali, Pakistan | KX358856 | KX358854 | [50] | |
Phragmidium rosae-californicae | MVAP0000154 | Rosa californica | Putah Creek Reserve, Davis, California, America | MK045315 | MK045315 | — | |
Phragmidium rosae-moschatae | BPI 893257 | Rosa macrophylla | — | — | KY798368 | — | |
Phragmidium rosae-multiflorae | HMAS71053 | Rosa multiflora | Shanxi, China | — | KU059174 | [65] | |
Phragmidium rosae-multiflorae | HMAS94924 | Rosa multiflora | Zhejiang, China | — | KU059175 | [65] | |
Phragmidium rosae-multiflorae | BJFCR 03454 * | Rosa multiflora | Jiangxi, China | MN264721 | MN264739 | [63] | |
Phragmidium rosae-roxburghii | HGUP21025 * | Rosa roxburghii | Guizhou, China | OL684818 | OL684831 | [65] | |
Phragmidium rosae-roxburghii | GMB0104 | Rosa xanthina | Guizhou, China | OQ067092 | — | This study | |
Phragmidium rubi-idaei | HMUT100470 | Rubus saxatilis | Chongqing, China | — | KU059163 | — | |
Phragmidium rubi-oldhami | HMAS64306 | — | China | — | MG669116 | [59] | |
Phragmidium tormentillae | GMB00114 | Potentilla simulatrix | Guizhou, China | OQ067093 | — | This study | |
Phragmidium tormentillae | BPI 843392 | Duchesnea sp. | Maryland, America | — | DQ354553 | [8] | |
Phragmidium tuberculatum | BPI 877977 | Rosa floribunda | Massachusetts, America | — | KJ841923 | [66] | |
Phragmidium tuberculatum | BPI 877980 | Rosa floribunda | Oregon, America | — | KJ841922 | [66] | |
Phragmidium violaceum | PDD 99246 | Rubus sp. | New Zealand | — | KJ716351 | [36] | |
Phragmidium yangii | BJFC:R00338 * | Rosa sp. | China | — | NG_060138 | [62] | |
Phragmidium zangdongii | BJFC:R02447 * | Rosa tibetica | Tibet, China | MH128372 | NG_064490 | [59] | |
Phragmidium zhouquense | BJFC:R01516 * | Rosa omeiensis | China | — | NG_060139 | [62] | |
Trachyspora alchemillae | WM 1019 | Alchemilla vulgaris | — | — | AF426220 | [61] | |
Trachyspora alchemillae | BPI 843828 | Alchemilla vulgaris | Switzerland | — | DQ354550 | [8] | |
Xenodochus carbonarius | PUR N15566 | Sanguisorba officinalis | — | — | MW049289 | [40] | |
Pucciniastraceae | Melampsorella elatina | WM 1092 | Abies alba | — | — | AF426232 | [61] |
Melampsorella elatina | PUR 82 | Cerastium fontanum | Minnesota, America | — | MG907233 | [10] | |
Pucciniastrum circaeae | RB 2098 | Circaea lutetiana | — | — | AF426227 | [61] | |
Pucciniastrum corni | TSH-R13510 | Cornus kuosa | Tottori, Japan | AB221437 | AB221409 | [67] | |
Pucciniastrum epilobii | PUR N11088(MCA5308) | Epilobium angustifolium | — | — | MW147083 | [40] | |
Pucciniastrum fagi | TSH-R10724 | Fagus crenata | Tochigi, Japan | AB221425 | AB221378 | [67] | |
Pucciniastrum hikosanense | TSH-R4287 (IBA2565) | Acer rufinerve | Yamanashi Japan | AB221441 | AB221388 | [67] | |
Pucciniastrum hydrangeae | MCA2837 | Hydrangea arborescens | North Carolina, America | — | MG907240 | [10] | |
Pucciniastrum kusanoi | HiroU21509 | Clethra barbinervis | Miyazaki, Japan | AB221426 | AB221402 | [67] | |
Pucciniastrum yoshinagai | TSH-R4272 IBA8430 | Stewartia monadelpha | Nara, Yoshino-gun, Japan | AB221434 | AB221411 | [67] | |
Thekopsora minima | MCA2988 | Vaccinium angustifolium | Maryland, America | — | MG907243 | [10] | |
Sphaerophragmiaceae | Austropuccinia psidii | BRIP:58164 | Rhodamnia angustifolia | Brisbane, Queensland. Australia | — | KF318449 | [67] |
Dasyspora amazonica | BPI US0116382 * | Xylopia amazonica | Brazil | JF263460 | JF263460 | [68] | |
Dasyspora gregaria | ZT Myc 3397 | Xylopia cayennensis | French Guiana | JF263477 | JF263477 | [68] | |
Dasyspora guianensis | ZT Myc 3413 * | Xylopia benthamii | French Guiana | JF263479 | JF263479 | [68] | |
Dasyspora mesoamericana | PUR 42390 * | Xylopia frutescens | Panama | JF263480 | JF263480 | [68] | |
Dasyspora segregaria | PMA MP4941 | Xylopia aromatica | Panama | JF263488 | JF263488 | [68] | |
Dasyspora winteri | S F30078 | Xylopia sericea | Brazil | JF263492 | JF263492 | [68] | |
Puccorchidium polyalthiae | ZT HeRB 251 | Polyalthia longifolia | India | JF263493 | JF263493 | [68] | |
Sphaerophragmium acaciae | BRIP:56910 | Albizzia sp. | Kununurra, Western Australia, Australia | — | KJ862350 | [69] | |
Sphaerophragmium longicorne | PUR N16513 | Dalbergia hostilis | — | — | MW147053 | [40] | |
Sphenorchidium xylopiae | PC 0096711 | Xylopia aethiopica | western Central Africa. | KM217355 | KM217355 | [70] | |
Uredinineae incertae sedis | Allodus podophylli | BPI 842277 | Podophyllum peltatum | Maryland, America | DQ354543 | DQ354543 | [67] |
Neopuccinia bursa | RB 75707 | Protium heptaphyllum | Brazil | — | MH047186 | — | |
Nyssopsora altissima | GMB0103 * | Ailanthus altissima | Guizhou, China | OQ067089 | OQ067529 | This study | |
Nyssopsora echinata | KR0012164 | Meum athamanticum | — | — | MW049272 | [40] | |
Nyssopsora koelreuteriae | BBSW-1 | Koelreuteria bipinnata | — | KT750965 | KT750965 | [71] | |
Nyssopsora koelreuteriae | GMB0105 | Koelreuteria bipinnata | Guizhou, China | OQ067088 | — | This study | |
Nyssopsora thwaitesii | AMH:9528 | Schefflera wallichiana | India | KF550283 | — | [72] |
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Wu, Q.; He, M.; Liu, T.; Hu, H.; Liu, L.; Zhao, P.; Li, Q. Rust Fungi on Medicinal Plants in Guizhou Province with Descriptions of Three New Species. J. Fungi 2023, 9, 953. https://doi.org/10.3390/jof9090953
Wu Q, He M, Liu T, Hu H, Liu L, Zhao P, Li Q. Rust Fungi on Medicinal Plants in Guizhou Province with Descriptions of Three New Species. Journal of Fungi. 2023; 9(9):953. https://doi.org/10.3390/jof9090953
Chicago/Turabian StyleWu, Qianzhen, Minghui He, Tiezhi Liu, Hongmin Hu, Lili Liu, Peng Zhao, and Qirui Li. 2023. "Rust Fungi on Medicinal Plants in Guizhou Province with Descriptions of Three New Species" Journal of Fungi 9, no. 9: 953. https://doi.org/10.3390/jof9090953