Genera of Phytopathogenic Fungi (PDFDrive)

Accepted Manuscript
Genera of phytopathogenic fungi: GOPHY 1
Y. Marin-Felix, J.Z. Groenewald, L. Cai, Q. Chen, S. Marincowitz, I. Barnes, K.

Bensch, U. Braun, E. Camporesi, U. Damm, Z.W. de Beer, A. Dissanayake, J.
Edwards, A. Giraldo, M. Hernández-Restrepo, K.D. Hyde, R.S. Jayawardena, L.
Lombard, J. Luangsa-ard, A.R. McTaggart, A.Y. Rossman, M. Sandoval-Denis, M.
Shen, R.G. Shivas, Y.P. Tan, E.J. van der Linde, M.J. Wingfield, A.R. Wood, J.Q.
Zhang, Y. Zhang, P.W. Crous
PII: S0166-0616(17)30020-9
DOI: 10.1016/j.simyco.2017.04.002
Reference: SIMYCO 47
To appear in: Studies in Mycology
Please cite this article as: Marin-Felix Y, Groenewald JZ, Cai L, Chen Q, Marincowitz S, Barnes I,
Bensch K, Braun U, Camporesi E, Damm U, de Beer ZW, Dissanayake A, Edwards J, Giraldo A,
Hernández-Restrepo M, Hyde KD, Jayawardena RS, Lombard L, Luangsa-ard J, McTaggart AR,
Rossman AY, Sandoval-Denis M, Shen M, Shivas RG, Tan YP, van der Linde EJ, Wingfield MJ, Wood
AR, Zhang JQ, Zhang Y, Crous PW, Genera of phytopathogenic fungi: GOPHY 1, Studies in Mycology
(2017), doi: 10.1016/j.simyco.2017.04.002.
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ACCEPTED MANUSCRIPT
Genera of phytopathogenic fungi: GOPHY 1

Y. Marin-Felix1,2, J.Z. Groenewald1, L. Cai3, Q. Chen3, S. Marincowitz2, I. Barnes4, K. Bensch1,5, U. Braun6, E. Camporesi7,8,9, U.
Damm10, Z.W. de Beer2, A. Dissanayake11,12, J. Edwards13, A. Giraldo1,2, M. Hernández-Restrepo1,2, K.D. Hyde11,14, R.S.
Jayawardena11,12, L. Lombard1, J. Luangsa-ard15, A.R. McTaggart16, A.Y. Rossman17, M. Sandoval-Denis1,18, M. Shen19, R.G.
Shivas20, Y.P. Tan21,22, E.J. van der Linde23, M.J. Wingfield2, A.R. Wood24, J.Q. Zhang19, Y. Zhang19, P.W. Crous1,2
1Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands; 2Department of Microbiology and Plant Pathology, Forestry and
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Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa; 3State Key Laboratory of Mycology, Institute of Microbiology, Chinese
Academy of Sciences, Beijing 100101, China; 4Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria,
South Africa; 5Botanische Staatssammlung München, Menzinger Straße 67, D-80638 München, Germany; 6Martin-Luther-Universität, Institut für Biologie, Bereich
Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle (Saale), Germany; 7A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via
Roma 18, Forlì, Italy; 8A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314, Brescia, Italy; 9Società per gli Studi Naturalistici della Romagna, C.P. 144,
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Bagnacavallo (RA), Italy; 10Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany; 11Center of Excellence in Fungal Research,
School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand; 12Institute of Plant and Environment Protection, Beijing Academy of Agriculture and
Forestry Sciences, Beijing 100097, PR China; 13AgriBio Centre for AgriBiosciences, Department of Economic Development, Jobs, Transport and Resources, 5
Ring Road, LaTrobe University, Bundoora, Victoria 3083, Australia; 14School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand; 15Microbe
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Interaction and Ecology Laboratory, Biodiversity and Biotechnological Resource Research Unit (BBR), BIOTEC, NSTDA 113 Thailand Science Park
Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand; 16Department of Plant and Soil Science, Forestry and Agricultural
Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa; 17Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR
97331, USA; 18Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South
Africa; 19Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China; 20Centre for Crop Health, Institute for Agriculture and the
Environment, University of Southern Queensland, Toowoomba 4350, Queensland, Australia; 21Department of Agriculture & Fisheries, Biosecurity Queensland,
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Ecosciences Precinct, Dutton Park, QLD 4102, Australia; 22Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CT Utrecht, The
Netherlands; 23ARC - Plant Protection Research Institute, Biosystematics Division - Mycology, P. Bag X134, Queenswood 0121, South Africa; 24ARC - Plant
Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa.
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*Correspondence: Y. Marin-Felix, y.marin@westerdijkinstitute.nl, and P.W. Crous, p.crous@westerdijkinstitute.nl
Abstract: Genera of Phytopathogenic Fungi (GOPHY) is introduced as a new series of publications in order to provide a stable platform for the taxonomy of
phytopathogenic fungi. This first paper focuses on 21 genera of phytopathogenic fungi: Bipolaris, Boeremia, Calonectria, Ceratocystis, Cladosporium,
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Colletotrichum, Coniella, Curvularia, Monilinia, Neofabraea, Neofusicoccum, Pilidium, Pleiochaeta, Plenodomus, Protostegia, Pseudopyricularia, Puccinia,
Saccharata, Thyrostroma, Venturia and Wilsonomyces. For each genus, a morphological description and information about its pathology, distribution, hosts and
disease symptoms are provided. In addition, this information is linked to primary and secondary DNA barcodes of the presently accepted species, and relevant
literature. Moreover, several novelties are introduced, i.e. new genera, species and combinations, and neo-, lecto- and epitypes designated to provide a stable
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taxonomy. This first paper includes one new genus, 26 new species, nine new combinations, and four typifications of older names.
Key words: DNA barcodes, fungal systematics, phytopathogenic fungi, plant pathology, taxonomy, typifications.
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Taxonomic novelties: New genus: Verkleyomyces Y. Marín & Crous; New species: Bipolaris saccharicola Y. Marín & Crous, Bi. variabilis Y. Marín & Crous,
Boeremia trachelospermi Q. Chen & L. Cai, Calonectria ecuadorensis L. Lombard & Crous, Ca. longiramosa L. Lombard & Crous, Ca. nemoralis L. Lombard &
Crous, Ca. octoramosa L. Lombard & Crous, Ca. parvispora L. Lombard & Crous, Ca. tucuruiensis L. Lombard & Crous, Cladosporium chasmanthicola Bensch,
U. Braun & Crous, Cl. kenpeggii Bensch, U. Braun & Crous, Cl. welwitschiicola Bensch, U. Braun & Crous, Colletotrichum sydowii Damm, Curvularia pisi Y.
Marín & Crous, Cu. soli Y. Marín & Crous, Neofusicoccum italicum Dissanayake & K.D. Hyde, Nm. pistaciicola Crous, Nm. pruni Crous, Pilidium septatum
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Giraldo & Crous, Pleiochaeta carotae Hern.-Rest., van der Linde & Crous, Plenodomus deqinensis Q. Chen & L. Cai, Protostegia eucleicola Crous, Saccharata
leucospermi Crous, S. protearum Crous, Thyrostroma franseriae Crous, Venturia phaeosepta Y. Zhang ter & J.Q. Zhang; New combinations: Coniella hibisci
(B. Sutton) Crous, Monilinia mumeicola (Y. Harada, Y. Sasaki & T. Sano) Sandoval-Denis & Crous, M. yunnanensis (M.J. Hu & C.X. Luo) Sandoval-Denis &
Crous, Pseudopyricularia bothriochloae (Crous & Cheew.) Y. Marín & Crous, Puccinia dianellae (Dietel) McTaggart & R.G. Shivas, Pu. geitonoplesii (McAlpine)
McTaggart & R.G. Shivas, Pu. merrilliana (Syd. & P. Syd.) McTaggart & R.G. Shivas, Pu. rhagodiae (Cooke & Massee) McTaggart & R.G. Shivas,
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Verkleyomyces illicii Y. Marín & Crous; Typification: Epitypification: Ceratophorum setosum Kirchn., Coniella musaiaensis var. hibisci B. Sutton,
Helminthosporium carpophilum Lév.; Lectotypification: Ceratophorum setosum Kirchn.
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Available online xxx
INTRODUCTION
Since the advent of molecular DNA techniques, many species of phytopathogenic fungi have been shown to represent species
complexes or to be included in genera that are poly- or paraphyletic (Crous et al. 2015b). Resolving these generic and species
concepts is thus of the utmost importance for plant health and global trade in food and fibre (Crous et al. 2015b, 2016a). The
present project focused on genera of fungi that have members causing plant diseases (phytopathogenic), links to a larger
initiative called the “The Genera of Fungi project” based on Clements & Shear (1931) (www.GeneraOfFungi.org, Crous et al.
2014a, 2015a, Giraldo et al. 2017), which aims to revise the generic names of all currently accepted fungi (Kirk et al. 2013).
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Of the approximately 18 000 fungal genera that have thus far been described, only around 8 000 are in current use.
However, the majority of these were described before the DNA era. To validate the application of these names, their type
species need to be recollected and designated as epi- or neotypes with a MycoBank Typification (MBT) number to ensure
traceability of the nomenclatural act (Robert et al. 2013). Furthermore, to move to a single nomenclature for fungi (Wingfield et al.
2012, Crous et al. 2015b), their sexual-asexual links also need to be confirmed.
The present initiative forms part of the activities of the International Subcommission for the Taxonomy of Phytopathogenic Fungi
[Pedro Crous and Amy Rossman (co-chairs), of the International Committee for the Taxonomy of Fungi
(www.fungaltaxonomy.org/)].
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The aims of this project are to:
1. Establish a new website, www.plantpathogen.org, to host a database that will link metadata to other databases such as
MycoBank, Index Fungorum, FacesofFungi, U.S. National Fungus Collections Databases, etc., and associated DNA barcodes
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(ITS, LSU and other loci as needed) to GenBank (Schoch et al. 2014).
2. Source type specimens and cultures of the type species of genera from fungaria and Biological Resource Centres (BRCs),
and generate the required metadata as explained below.
3. Recollect fresh material of the type species if not already available, and as far as possible derive DNA barcodes and cultures
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from this material.
4. Designate type species, and type specimens of those species, for those genera where this has not been indicated in the
original publications.
5. Fix the application of the type species of generic names by means of lecto-, neo-, or epitypification as appropriate, and at the
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same time deposit cultures in at least two Microbial Biological Resource Centres (M-BRCs) from which they would be widely
available to the international research community.
6. Publish modern generic descriptions, and provide DNA barcodes for all accepted species, with reference to appropriate
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literature.
Authors with new submissions should ensure that all new species and typification events are registered in MycoBank (MB and
MBT numbers), respectively. It is recommended that the following issues are addressed in each genus:
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1. Modern generic description, and phylogenetic placement of the type species of the genus.
2. Higher order phylogeny.
3. New nomenclature merging asexual and sexual generic names (see Rossman et al. 2013, Johnston et al. 2014).
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4. Description of novel taxa, with a reference collection (e.g. fungarium), and MycoBank and GenBank sequence accession
numbers.
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5. Name changes that result from the new phylogenetic placement.

6. Notes discussing the relevance and implications of the phylogeny, and importance of the genus.
Authored generic contributions will be combined into scientific papers to be published online in Studies in Mycology, and also
placed in a database displayed on www.plantpathogen.org. Preference will be given to genera that include novel DNA data
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and/or novel species or typifications. Authors that wish to contribute to future issues of this project are encouraged to first contact
Pedro Crous (p.crous@westerdijkinstitute.nl) before final submission, to ensure there is no potential overlap with activities arising
from other research groups. The genera chosen in the first paper were randomly selected, based on the fact that their
phylogenetic position was resolved, DNA data were available for those species known from culture, and novel species or
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typifications were available for inclusion.

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MATERIAL AND METHODS
Isolates and morphological analysis

Descriptions of the new taxa and typifications are based on cultures obtained from the Westerdijk Fungal Biodiversity Institute,
Utrecht, the Netherlands (CBS), the working collection of P.W. Crous (CPC), housed at the Westerdijk Institute, Herbarium
Mycologicum Academiae Sinicae (HMAS), BIOTEC Culture Collection (BCC), the Queensland Plant Pathology Herbarium
(BRIP), the Chinese General Microbiological Culture Collection Center (CGMCC), the Mae Fah Luang University Culture
Collection (MFLUCC), and the Victorian Plant Pathogen Herbarium (VPRI). For fresh collections, we followed the procedures
previously described in Crous et al. (1991). Colonies were transferred to different media, i.e. carnation leaf agar (CLA), cornmeal
agar (CMA), 2 % malt extract agar (MEA), 2 % potato-dextrose agar (PDA), synthetic nutrient-poor agar (SNA), oatmeal agar
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(OA), water agar (WA) (Crous et al. 2009c), autoclaved pine needles on 2 % tap water agar (PNA) (Smith et al. 1996), and
incubated at different conditions depending on the taxon to induce sporulation (requirements of media and conditions of
incubations specified in each genus). Reference strains and specimens are maintained at the BCC, CBS, CGMCC, HMAS and
MFLUCC.
Vegetative and reproductive structures were mounted in clear lactic acid, Shear's mounting fluid and lactophenol cotton
blue, either directly from specimens or from colonies sporulating on CLA, MEA, OA, PDA, PNA, or SNA. Sections of conidiomata
were made by hand for examination purposes. For cultural characterisation, isolates were grown and incubated on different
culture media and temperatures as stipulated for each genus. Colour notations were rated according to the colour charts of
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Rayner (1970). For some taxa, NaOH pot test was carried out on MEA cultures to detect the production of metabolite E
(Boerema et al. 2004). Taxonomic novelties were deposited in MycoBank (www.MycoBank.org; Crous et al. 2004b).
DNA isolation, amplification and analyses
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Fungal DNA was extracted and purified directly from the colonies or host material according to the Wizard® Genomic DNA
purification kit protocol (Promega, Madison, USA). Primers and protocols for the amplification and sequencing of gene loci can
be found in the bibliography related to the phylogeny presented for each genus. Phylogenetic analyses consisted of Maximum-
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Likelihood (ML), Bayesian Inference (BI), and Maximum Parsimony (MP). The ML was carried out using methods described by
Hernández-Restrepo et al. (2016), and the MP using those described by Crous et al. (2006b). The BI was inferred as described
by Hernández-Restrepo et al. (2016), or on the CIPRES portal (www.phylo.org) using MrBayes on XSEDE v. 3.2.6. Sequence
data generated in this study was deposited in GenBank and ENA databases, and the alignments and trees in TreeBASE
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(http://www.treebase.org).
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RESULTS
Bipolaris Shoemaker, Canad. J. Bot. 37: 882. 1959. Fig. 1.

Synonym: Cochliobolus Drechsler, Phytopathology 24: 973. 1934.
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Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Pleosporaceae.

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Type species: Bipolaris maydis (Y. Nisik. & C. Miyake) Shoemaker. Neotype and ex-neotype culture: ATCC 48332, CBS 137271.
DNA barcodes (genus): LSU, ITS.

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DNA barcodes (species): ITS, gapdh, tef1. Table 1. Fig. 2.
Ascomata pseudothecial, mostly globose to ellipsoidal, sometimes flask-shaped or flattened on hard substrata, brown or black,
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immersed, erumpent, partially embedded or superficial, free, smooth or covered with vegetative hyphae; ostiole central, papillate or
with a sub-conical, conical, paraboloid or cylindrical neck; ascomatal wall comprising pseudoparenchymatous cells of equal
thickness or slightly thickened at apex of the ascoma. Hamathecium comprising septate, filiform, branched pseudoparaphyses. Asci
bitunicate, clavate, cylindrical-clavate or broadly fusoid, straight or slightly curved, thin-walled, fissitunicate, often becoming more or
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less distended prior to dehiscence, short pedicellate, rounded at apex. Ascospores multiseriate, filiform or flagelliform, hyaline or
sometimes pale yellow or pale brown at maturity, septate, helically coiled within ascus, ascospore coiling moderate to strongly, often
with a mucilaginous sheath. Conidiophores single, sometimes arranged in small groups, straight to flexuous or geniculate, pale to
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dark brown, branched, thick-walled, septate. Conidiogenous nodes smooth to slightly verrruculose. Conidia canoe-shaped, fusoid or
obclavate, mostly curved, hyaline, pale or dark brown, reddish brown or pale to deep olivaceous, thick-walled, smooth-walled, 3–14-
distoseptate, germinating by production of one or two germination tubes by polar cells; hila often slightly protruding or truncate,
sometimes inconspicuous; septum ontogeny first septum median to sub-median, second septum delimits basal cell and third
delimits distal cell (adapted from Manamgoda et al. 2014).
Culture characteristics: Colonies on PDA white or pale grey when young, brown or dark grey when mature, fluffy, cottony, raised or
convex with papillate surface, margin lobate, undulate, entire or sometimes rhizoid.
Optimal media and cultivation conditions: Sterilised Zea mays leaves placed on 1.5 % WA or slide cultures of PDA under near-
ultraviolet light (12 h light, 12 h dark) at 25 °C to induce sporulation of the asexual morph, while for the sexual morph Sach's agar
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with sterilised rice or wheat straw at 25 °C is used.
Distribution: Worldwide.
Hosts: Mainly pathogens of grasses, but some also on non-grass hosts, causing devastating diseases on cereal crops in the
Poaceae, including rice, maize, wheat and sorghum and on various other host plants. Moreover, this genus can occur on at least 60
other genera in Anacardiaceae, Araceae, Euphorbiaceae, Fabaceae, Malvaceae, Rutaceae and Zingiberaceae as either saprobes
or pathogens.
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Disease symptoms: Leaf spots, leaf blight, melting out, root rot, and foot rot among others.
Notes: Species delimitation based on morphology alone is limited since many species have overlapping characters. Moreover,
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the morphology of the sexual morph is of limited value due to difficulties to induce this morph in culture, or find it in nature. The
genus is morphologically similar to Curvularia, and distinguishing these genera can be problematic. Both genera contain species
with straight or curved conidia, but in Bipolaris the curvature is continuous throughout the length of the conidium, while the
conidia of Curvularia have intermediate cells inordinately enlarged which contributes to their curvature. Moreover, conidia in
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Bipolaris are usually longer than in Curvularia. Another morphological difference is the presence of stromata in some species of
Curvularia, a feature not observed in species of Bipolaris. In order to properly delineate both genera, phylogenetic studies using
ITS, gapdh and tef1 sequences were recently performed (Manamgoda et al. 2014, 2015).
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References: Ellis 1971, Sivanesan 1987 (morphology and pathogenicity); Manamgoda et al. 2011, Tan et al. 2016 (morphology,
phylogeny and pathogenicity); Manamgoda et al. 2014 (morphology, phylogeny, pathogenicity and key of all Bipolaris spp.).
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Bipolaris saccharicola Y. Marín & Crous, sp. nov. MycoBank MB820809. Fig. 3.
Etymology: Name refers to the host genus it was isolated from, Saccharum.
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Hyphae hyaline to pale brown, branched, septate, thin-walled, 2.5–5.5 µm. Conidiophores arising in smalls groups, septate,
straight or flexuous, smooth-walled, sometimes branched, cell walls thicker than those of vegetative hyphae, mononematous,
semi- to macronematous, pale brown to brown, paler towards apex, rarely swollen at base, up to 900 µm tall. Conidiogenous
cells smooth-walled, terminal or intercalary, subhyaline to pale brown or brown, subcylindrical to swollen, 10–27(–47) × 4–8 µm.
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Conidia verruculose, curved, rarely straight, fusiform, subhyaline to pale brown or brown, (2–)4–9(–11)-distoseptate, (30–)45–
120 × 10.5–20(–21.5) µm; hila inconspicuous, brown, slightly protuberant, flat, darkened, slightly thickened, 2–4 µm.
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Chlamydospores and sexual morph not observed.
Culture characteristics: Colonies on PDA reaching 41–53 mm diam after 1 wk, moderate aerial mycelium giving a cottony
appeareance, margin lobate; surface olivaceous grey to olivaceous black; reverse olivaceous black.
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Material examined: Unknown country, unknown substratum, 1926, H. Atherton (holotype CBS H-23114, culture ex-type CBS
155.26 = MUCL 9693); Unknown country, from Saccharum officinarum, unknown date, R.R. Nelson, CBS 324.64; CBS 325.64
= DSM 62597 = MUCL 18220 = MUCL 9694 = NRRL 5241.
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Notes: This species is closely related to Bi. maydis. However, Bi. saccharicola can easily be distinguished by the absence of a
sexual morph, longer conidiophores and verruculose, more prominently curved conidia. Both species can be found on the same
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host, Saccharum officinarum. Other species of Bipolaris isolated from this host include Bi. cynodontis, Bi. sacchari, Bi. setariae,
Bi. stenospila and Bi. yamadae (Manamgoda et al. 2014). Bipolaris saccharicola is morphologically similar to Bi. sacchari, but Bi.
saccharicola can be distinguished by its much longer and non-geniculate conidiophores and wider and more septate conidia.
Bipolaris variabilis Y. Marín, Y.P. Tan & Crous, sp. nov. MycoBank MB820810. Fig. 4.
Etymology: Name refers to the highly variable conidial morphology.
Leaf spots brown to reddish, elongated, often confluent and following veins, some with central part brown, 2.5 × 1–2 mm.
Hyphae subhyaline to pale brown, branched, septate, thin-walled, 3–6 µm. Conidiophores arising in groups, septate, straight or
flexuous, sometimes geniculate at upper part, smooth to verruculose, branched, cells walls thicker than those of vegetative
hyphae, mononematous, semi- to macronematous, pale brown to brown, paler towards apex, slightly swollen at base, up to
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1 600 µm tall. Conidiogenous cells smooth-walled, terminal or intercalary, proliferating sympodially, subhyaline or pale brown to
brown, subcylindrical to swollen, (6.5–)8–26(–35) × 5.5–11 µm. Conidia verruculose, straight or slightly curved, globose,
subglobose, ellipsoidal to obclavate, pale brown to brown, apical and basal cells paler than middle cells being subhyaline to pale
brown, (1–)3–7(–9)-distoseptate, 13.5–77 × 10–19.5 µm; hila inconspicuous, slightly protuberant, flat, darkened, thickened, 3–6
µm diam. Chlamydospores and sexual morph not observed.
Culture characteristics: Colonies on PDA reaching 90 mm diam within 1 wk, with sparse to moderate aerial mycelium giving a
cottony appearance, lobate; surface olivaceous grey to iron-grey; reverse olivaceous black.
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Material examined: Argentina, from leaf spots on Pennisetum clandestinum, 28 Jul. 1986, col. M.N. Sisterna, isol. J.L. Alcorn
(holotype CBS H-23115, culture ex-type CBS 127716 = BRIP 15349). Brazil, from Pennisetum clandestinum, Apr. 1987, J.J.
Muchovej, CBS 127736 = BRIP 15702 = ATCC 62423.
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Notes: Bipolaris variabilis can easily be distinguished based on its highly variable conidial size, shape and septation. Hitherto,
this species has only been found on Pennisetum clandestinum in South America. Other species of Bipolaris can be found on
Pennisetum spp., i.e. Bi. bicolor, Bi. colocasiae, Bi. cynodontis, Bi. maydis, Bi. mediocris, Bi. sacchari, Bi. setariae, Bi.
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sorokiniana, Bi. stenospila, Bi. urochloae and Bi. zeae; however, only Bi. mediocris is restricted to that host (Manamgoda et al.
2014). Bipolaris mediocris and Bi. variabilis are morphologically similar, but Bi. variabilis produces smaller, verruculose conidia.
Moreover, Bi. mediocris is characterised by much shorter conidiophores (up to 150 µm tall), and has only been reported in Africa
(Farr & Rossman 2017). Bipolaris variabilis is closely related to Bi. zeae, but the latter is characterised by shorter conidiophores
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(up to 370 µm tall), and less septate conidia that are less variable in shape than those of Bi. variabilis.
Bipolaris yamadae (Y. Nisik.) Shoemaker, Canad. J. Bot. 37: 884. 1959. Fig. 5.
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Basionym: Helminthosporium yamadae Y. Nisik., Rept. Ohara. Inst. Agr. Research 4: 120. 1928.
Synonym: Drechslera yamadai (Y. Nisik.) Subram. & B.L. Jain, Curr. Sci. 35: 355. 1966.
Helminthosporium euphorbiae Hansf., Proc. Linn. Soc. London 155: 49. 1943.
Bipolaris euphorbiae (Hansf.) J.J. Muchovej & A.O. Carvalho, Mycotaxon 35: 160. 1989.
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Drechslera euphorbiae (Hansf.) M.B. Ellis, Dematiaceous Hyphomycetes (Kew): 440. 1971.
Notes: Bipolaris euphorbiae was originally described in Helminthosporium (Hansford 1943), then transferred to Drechslera (Ellis
1971), and finally placed in Bipolaris based on the bipolar germination and hilum structure (Muchovej & Carvalho 1989). In their
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revision of Bipolaris, Manamgoda et al. (2014) accepted this species in the genus despite the lack of molecular data. In the
present study, the neotype strain of Bi. euphorbiae CBS 127087 (=BRIP 16567; see Fig. 5), which was designated by Muchovej
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& Carvalho (1989), clustered with the ex-epitype strain of Bi. yamadae. Both species are morphologically similar differing only in
the size of the structures that are usually overlapping. Based on these data, we propose to reduce Bi. euphorbiae to synonymy
under Bi. yamadae. Moreover, we emended the description of Bi. yamadae to include the morphology of its new synonym, as
well as the new host and distribution records.
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Leaf spots on Panicum sp. ovoid, oblong, pale brown at margin and pale brown at centre, with an irregular concentric zone.
Hyphae hyaline, branched, septate, anastomosing, thin-walled, 1.5–4.5 µm. Conidiophores arising singly or in small groups,
septate, rarely branched, straight or flexuous, sometimes geniculate at upper part, smooth walled, mononematous, semi- to
macronematous, olive brown to pale brown, sometimes paler towards apex, swollen at base, 40–650 × 3–10.5 µm.
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Conidiogenous cells smooth-walled, sometimes slightly verruculose, terminal or intercalary, subhyaline to pale brown or dark
brown, subcylindrical to slightly swollen, 7–30(–40) × 5.5–9.5 µm. Conidia smooth-walled, straight or curved, ellipsoidal,
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cylindrical, fusiform or obclavate, sometimes obovoid, with rounded ends, subhyaline to pale brown or olive brown, (3–)5–7(–11)-
distoseptate, 27–100(–120) × 11.5–20 µm; hila 2.5–4.5 µm, non or slightly protuberant, flat, darkened; germination at both ends.
Culture characteristics: Colonies on PDA reaching 30–65 mm diam after 1 wk, cottony, with irregular margins; surface pale
olivaceous grey to olivaceous grey; reverse olivaceous black.
Distribution: Brazil, Cuba, China, Japan, India, Sudan, Tanzania, USA (IA, ID, ND, WI).
Hosts: Panicum capillare, Pa. implicatum, Pa. maximum, Pa. miliaceum, Euphorbia sp., Oryza sp., Saccharum sp., Setaria
plicata (Farr & Rossman 2017).
Authors: Y. Marin-Felix, P.W. Crous & Y.P. Tan

ACCEPTED MANUSCRIPT
Boeremia Aveskamp et al., Stud. Mycol. 65: 36. 2010. Fig. 6.
Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Didymellaceae.
Type species: Boeremia exigua (Desm.) Aveskamp et al. Representative strain: CBS 431.74.
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DNA barcodes (species): act, cal, rpb2, tef1, tub2. Table 2. Fig. 7.
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Ascomata pseudothecial, subglobose. Asci cylindrical or subclavate, 8-spored, biseriate. Ascospores ellipsoidal, 1-septate.
Conidiomata pycnidial, variable in shape and size, mostly globose to subglobose, superficial or immersed into agar, solitary or
confluent; ostiole non-papillate or papillate, lined internally with hyaline cells when mature; conidiomatal wall
pseudoparenchymatous, multi-layered, outer wall brown pigmented. Conidiophores reduced to conidiogenous cells.
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Conidiogenous cells phialidic, hyaline, smooth, ampulliform to doliiform. Conidia variable in shape, hyaline, smooth- and thin-
walled, mainly aseptate, but 1(–2)-septate larger conidia may be found (adapted from Aveskamp et al. 2010).
Culture characteristics: Colonies on OA white to dull green, grey olivaceous to olivaceous or smoke-grey, velvety, floccose to woolly,
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margin often regular, sometimes lobate and irregular scalloped.
Optimal media and cultivation conditions: OA or PNA at 25 °C under near-ultraviolet light (12 h light, 12 h dark) to promote
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sporulation.
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Hosts: Seed-borne pathogens of Phaseolus vulgaris (Fabaceae) and noxious pathogens of Coffea arabica (Rubiaceae). Species on
more than 200 host genera including Amaryllidaceae, Apocynaceae, Araliaceae, Asteraceae, Caprifoliaceae, Chenopodiaceae,
Crassulaceae, Fabaceae, Lamiaceae, Linaceae, Oleaceae, Salicaceae, Solanaceae, Ulmaceae, Umbelliferae.
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Disease symptoms: Leaf spots, stem lesions, black node, bulb rot, root rot, shoot dieback.
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Notes: The genus Boeremia was established by Aveskamp et al. (2010) to accommodate phoma-like species that are
morphologically similar and closely related to Ph. exigua. Taxa in this genus are characterised by having ostioles with a hyaline
inner layer of cells and producing aseptate and septate conidia (Aveskamp et al. 2010). To date only Bo. lycopersici has been
reported to have a sexual morph. Recently, Chen et al. (2015a) and Bernet et al. (2015) further examined the phylogenetic
relationships of taxa in Boeremia in two combined multilocus analyses, the first one based on LSU, ITS, tub2 and rpb2
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sequences, and the second on ITS, act, cal, tef1 and tub2 sequences.
References: Boerema et al. 2004 (morphology and pathogenicity); Aveskamp et al. 2010, Chen et al. 2015a (morphology and
phylogeny); Berner et al. 2015 (morphology, pathogenicity and phylogeny).
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Boeremia trachelospermi Q. Chen & L. Cai, sp. nov. MycoBank MB818819. Fig. 8.
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Etymology: Named for the host genus from which the holotype was collected, Trachelospermum.
Conidiomata pycnidial, solitary or aggregated, globose to subglobose, glabrous or with few hyphal outgrowths, superficial, with a
short neck, 75–255 × 60–225 µm; ostiole single, papillate or non-papillate; conidiomatal wall pseudoparenchymatous 2–4-
layered, 16.5–37 µm thick, composed of isodiametric cells. Conidiophores reduced to conidiogenous cells. Conidiogenous cells
phialidic, hyaline, smooth, ampulliform to doliiform, 4.5–12.5 × 4.5–6 µm. Conidia variable in shape, mostly ovoid, ellipsoidal to
cylindrical, smooth- and thin-walled, hyaline, mainly aseptate, occasionally 1-septate large conidia, 4.5–9.5 × 2.5–4.5 µm, with
1–8 guttules. Conidial matrix cream-coloured.
Culture characteristics: Colonies on OA, reaching 47–55 mm diam after 1 wk, margin regular, floccose, white, dark grey near
centre; reverse white to buff, dark grey near centre. Colonies on MEA 40–60 mm diam after 1 wk, margin regular, woolly, pale
ACCEPTED MANUSCRIPT
olivaceous grey; reverse concolourous. Colonies on PDA, reaching 20–25 mm diam after 1 wk, margin regular, floccose,
compact, white to olivaceous; reverse white to buff, olivaceous near centre. NaOH test negative.
Material examined: USA, on seedlings of Trachelospermum jasminoides, 2014, W.J. Duan (holotype HMAS 246706, culture ex-
type CGMCC 3.18222 = LC 8105).
Notes: Boeremia trachelospermi represents the first report of a Boeremia species on Trachelospermum (Apocynaceae).
Phylogenetically, it forms a distinct lineage separate from Bo. diversispora, the Bo. exigua varieties, Bo. noackiana and Bo.
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sambuci-nigrae (Fig. 8), and morphologically it often produces longer conidiogenous cells and conidia than the other taxa.
Authors: Q. Chen & L. Cai
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Calonectria De Not., Comm. Soc. crittog. Ital. 2(fasc. 3): 477. 1867. Fig. 9, 10.
Synonyms: Cylindrocladium Morgan, Bot. Gaz. 17: 191. 1892.
Candelospora Rea & Hawley, Proc. R. Ir. Acad., Sect. B, Biol. Sci. 13: 11. 1912.
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Classification: Sordariomycetes, Hypocreomycetidae, Hypocreales, Nectriaceae.
Type species: Calonectria pyrochroa (Desm.) Sacc. Holotype: Italy, leaves of Magnolia grandiflora, Daldini (as Ca. daldiniana);
Lectotype: France, litter of Platanus, Autumn. Desm., Pl. Crypt. France Ed. 2 (2) # 372 ( fide Rossman 1979); no culture or DNA
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data available.

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DNA barcodes (species): cmdA, his3, tef1, tub2, and rpb2. Table 3. Fig. 11.
Ascomata perithecial, solitary or in groups, globose to subglobose to ovoid, yellow to orange to red or red-brown to brown,
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turning dark red to red-brown in KOH, rough-walled; ascomatal apex consisting of flattened, thick-walled hyphal elements with
rounded tips forming a palisade, discontinuous with warty wall, gradually becoming thinner towards ostiolar canal, and merging
with outer periphyses; ascomatal base consisting of dark brown-red, angular cells, merging with an erumpent stroma, cells of
outer wall layer continuing into pseudoparenchymatous cells of erumpent stroma. Asci 8-spored, clavate, tapering to a long thin
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stalk. Ascospores aggregated in upper third of ascus, hyaline, smooth, fusoid with rounded ends, straight to sinuous,
unconstricted, or constricted at septa. Megaconidiophores, if present, borne on agar surface or immersed in agar; stipe
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extensions mostly absent; conidiophores unbranched, terminating in 1–3 phialides, or sometimes with a single subterminal
phialide; phialides straight to curved, cylindrical, seemingly producing a single conidium, periclinal thickening and an
inconspicuous, divergent collarette rarely visible. Megaconidia hyaline, smooth, frequently remaining attached to phialide, multi-
septate, widest in middle, bent or curved, with a truncated base and rounded apical cell. Macroconidiophores consist of a stipe, a
penicillate arrangement of fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline or slightly pigmented
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at base, smooth or finely verruculose; stipe extensions septate, straight to flexuous, mostly thin-walled, terminating in a thin-
walled vesicle of characteristic shape. Conidiogenous apparatus with 0–1-septate primary branches, up to eight additional
branches, mostly aseptate, each terminal branch producing 1–6 phialides; phialides cylindrical to allantoid, straight to curved, or
doliiform to reniform, hyaline, aseptate, apex with minute periclinal thickening and inconspicuous divergent collarette.
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Macroconidia cylindrical, rounded at both ends, straight or curved, widest at base, middle, or first basal septum, 1- to multi-
septate, lacking visible abscission scars, held in parallel cylindrical clusters by colourless slime. Microconidiophores consist of a
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stipe and a penicillate or subverticillate arrangement of fertile branches; primary branches 0–1-septate, subcylindrical; secondary
branches 0–1-septate, terminating in 1–4 phialides; phialides cylindrical, straight to slightly curved, apex with minute periclinal
thickening and marginal frill. Microconidia cylindrical, straight to curved, rounded at apex, flattened at base, 1(–3)-septate, held in
asymmetrical clusters by colourless slime.
Culture characteristics: Colonies on MEA white to pale brick when young, becoming pale brick to dark sepia when mature, fluffy,
cottony, effuse to convex with papillate surface, margin entire, undulate, lobate, or fimbriate, sometimes with abundant
chlamydospores forming microsclerotia within medium.
Optimal media and cultivation conditions: CLA to induce sporulation of the asexual morph at 25 °C, while for the sexual morph sterile
toothpicks placed on SNA is used at 20 °C.
ACCEPTED MANUSCRIPT
Hosts: Soil-borne pathogens of forestry, agricultural and horticultural crops representing approximately 100 plant families and 340
plant host species (Crous 2002, Lombard et al. 2010c).
Disease symptoms: Leaf spots, leaf and shoot blights, cutting rot, stem cankers, damping-off and root rot.
Notes: The genus Calonectria presently includes 151 species of which only Ca. hederae and Ca. pyrochroa are not supported by
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ex-type cultures and supplementary DNA barcodes. Species delimitation based on morphology alone is complicated by the large
number of cryptic taxa recognised in this genus (Lombard et al. 2016). The perithecia of several Calonectria spp. are
morphologically similar. The cylindrocladium-like asexual morph, the life phase most commonly found in nature, is extensively
used for taxon identification, although it is complicated by the morphological overlap of some cryptic species. For accurate
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species delimitation, phylogenetic inference of the cmdA, tef1 and tub2 (or combinations of these) is required.
References: Crous 2002 (morphology, pathogenicity and monograph); Lombard et al. 2010a–d, 2015, 2016 (morphology,
phylogeny and key of Calonectria spp.); Alfenas et al. 2015 (morphology and phylogeny).
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Calonectria ecuadorensis L. Lombard & Crous, sp. nov. MycoBank MB820849. Fig. 12.
Etymology: Name refers to Ecuador, the country where this fungus was collected.
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Macroconidiophores consist of a stipe bearing a penicillate arrangement of fertile branches, and a stipe extension terminating in
a vesicle; stipe septate, hyaline, smooth, 55–70 × 6–10 µm; stipe extension septate, straight to flexuous, 130–280 µm long, 3–6
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µm wide at apical septum, terminating in a clavate vesicle, 4–6 µm diam. Conidiogenous apparatus 45–90 µm wide, and 20–90
µm long; primary branches aseptate, 13–31 × 4–6 µm; secondary branches aseptate, 13–23 × 4–5 µm; tertiary branches
aseptate, 9–15 × 3–4 µm, each terminal branch producing 2–6 phialides; phialides doliiform to reniform, hyaline, aseptate, 6–11
× 2–4 µm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends,
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straight, (34–)35–39(–44) × (3−)3.5−4.5(−5) µm (av. 37 × 4 µm), 1-septate, lacking a visible abscission scar, held in parallel
cylindrical clusters by colourless slime. Mega- and microconidia not observed.
Culture characteristics: Colonies moderately fast growing (35−55 mm diam) on MEA after 1 wk at room temperature; surface
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rosy-buff to cinnamon with sparse white woolly aerial mycelium and abundant sporulation on aerial mycelium and colony surface;
reverse rosy-buff to cinnamon to sepia with abundant chlamydospores throughout medium, forming microsclerotia.
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Specimens examined: Ecuador, from soil, 20 Jun. 1997, M.J. Wingfield (holotype CBS H-23134, culture ex-type CBS 111706 =
CPC 1636); ibid., culture CBS 114164 = CPC 1634.
Notes: Calonectria ecuadorensis can be distinguished from Ca. ecuadoriae (Crous et al. 2006a) by its fewer branches in the
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conidiogenous apparatus. Also, the conidia of Ca. ecuadorensis [(34–)35–39(–44) × (3−)3.5−4.5(−5) µm (av. 37 × 4 µm)] are
smaller than those of Ca. ecuadoriae [(45–)48–55(–65) × (4−)4.5(−5) µm (av. 51 × 4.5 µm); Crous et al. 2006a].
Calonectria longiramosa L. Lombard & Crous, sp. nov. MycoBank MB820843. Fig. 13.
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Etymology. Name refers to the characteristic long fertile branches of the conidiogenous apparatus in this fungus.
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a vesicle; stipe septate, hyaline, smooth, 100–245 × 6–9 µm; stipe extension septate, straight to flexuous, 155–310 µm long, 4–
6 µm wide at apical septum, terminating in a clavate vesicle, 5–8 µm diam. Conidiogenous apparatus 50–85 µm wide, and 60–
140 µm long; primary branches aseptate to 1-septate, 22–42 × 4–6 µm; secondary branches aseptate, 15–35 × 3–6 µm; tertiary
branches aseptate, 12–30 × 3–6 µm; quaternary branches aseptate, 11−19 × 3–6 µm each terminal branch producing 2–4
phialides; phialides elongate doliiform to allantoid, hyaline, aseptate, 8–16 × 2–4 µm, apex with minute periclinal thickening and
inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight to slightly curved, (57–)66–76(–84) ×
(3−)4.5−5.5(−6) µm (av. 71 × 5 µm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless
slime. Mega- and microconidia not observed.
ACCEPTED MANUSCRIPT
amber with moderate white, woolly aerial mycelium and moderate sporulation on the aerial mycelium and colony surface; reverse
amber with abundant chlamydospores throughout the medium, forming microsclerotia.
Specimens examined: Brazil, Amazon, from Eucalyptus sp., 1993, P.W. Crous & A.C. Alfenas (holotype CBS H-22759, culture
ex-type CBS 116319 = CPC 3761); ibid., cultures CBS 116305 = CPC 3890.
Notes: Calonectria longiramosa is a new species in the Ca. pteridis complex. This species is characterised by the long fertile
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branches of the conidiogenous apparatus distinguishing it from the other species in this complex (Alfenas et al. 2015).
Calonectria nemoralis L. Lombard & Crous, sp. nov. MycoBank MB820850. Fig. 14.
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Etymology. Name refers to the environment, a Eucalyptus plantation, from where this fungus was collected.
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µm wide at the apical septum, terminating in a fusiform to ovoid vesicle, 7–9 µm diam. Conidiogenous apparatus 20–45 µm
wide, and 40–55 µm long; primary branches aseptate, 18–24 × 3–6 µm; secondary branches aseptate, 11–19 × 3–5 µm, each
terminal branch producing 2–4 phialides; phialides elongate doliiform to reniform, hyaline, aseptate, 6–14 × 2–4 µm, apex with
minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (44–)47–59(–
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71) × (3−)3.5−4.5(−6) µm (av. 53 × 4 µm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by
colourless slime. Mega- and microconidia not observed.
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sienna with sparse buff to white, woolly aerial mycelium with moderate sporulation on the aerial mycelium and colony surface;
reverse sienna with abundant chlamydospores throughout the medium, forming microsclerotia.
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Specimen examined: Brazil, from soil in Eucalyptus plantation, 1996, P.W. Crous (holotype CBS H-23135, culture ex-type CBS
116249 = CPC 3533).
Notes: Calonectria nemoralis is closely related to Ca. pseudovata. The macroconidia of Ca. nemoralis [(44–)47–59(–71) ×
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(3−)3.5−4.5(−6) µm (av. 53 × 4 µm)] are smaller than those of Ca. pseudovata [(55–)67–70(–80) × (4−)5 (−7) µm (av. 69 × 5
µm); Alfenas et al. 2015]. Furthermore, no microconidiophores and microconidia were observed in Ca. nemoralis, although they
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are readily produced by Ca. pseudovata (Alfenas et al. 2015).
Calonectria octoramosa L. Lombard & Crous, sp. nov. MycoBank MB820851. Fig. 15.
Etymology. Name refers to the eight levels of branching of the conidiogenous apparatus.
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a vesicle; stipe septate, hyaline, smooth, 34–170 × 6–10 µm; stipe extension septate, straight to flexuous, 118–262 µm long, 3–
8 µm wide at the apical septum, terminating in a clavate vesicle, 4–8 µm diam. Conidiogenous apparatus 58–128 µm wide, and
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50–90 µm long; primary branches aseptate, 14–31 × 5–8 µm; secondary branches aseptate, 10–23 × 4–6 µm; tertiary branches
aseptate, 7–19 × 3–5 µm; quaternary branches and additional branches (–8) aseptate, 8–14 × 3–5 µm, each terminal branch
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producing 2–6 phialides; phialides doliiform to reniform, hyaline, aseptate, 6–12 × 3–5 µm, apex with minute periclinal thickening
and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (32–)34–38(–39) × 4−5 µm (av. 36 × 4
µm), 1(−3)-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and
microconidia not observed.
Culture characteristics: Colonies fast growing (60−75 mm diam) on MEA after 1 wk at room temperature; surface cinnamon to
brick with abundant white woolly aerial mycelium and abundant sporulation on the aerial mycelium and colony surface; reverse
brick to sepia with abundant chlamydospores throughout the medium, forming microsclerotia.
Specimen examined: Ecuador, from soil, 20 Jun. 1997, M.J. Wingfield (holotype CBS H-23136, culture ex-type CBS 111423 =
CPC 1650).
ACCEPTED MANUSCRIPT
Notes: Calonectria octoramosa is a new species in the Ca. brassicae complex. It can be distinguished from other species in this
complex by having eight levels of branching in its conidiogenous apparatus.
Calonectria parvispora L. Lombard & Crous, sp. nov. MycoBank MB820844. Fig. 16.
Etymology. Name refers to the small macroconidia of this fungus.
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µm wide at the apical septum, terminating in a clavate vesicle, 4–8 µm diam. Conidiogenous apparatus 56–92 µm wide, and
50–70 µm long; primary branches aseptate, 16–34 × 4–7 µm; secondary branches aseptate, 11–20 × 4–6 µm; tertiary branches
aseptate, 7–15 × 3–5 µm; quaternary branches and additional branches (–6) aseptate, 8–16 × 3–5 µm, each terminal branch
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producing 2–6 phialides; phialides doliiform to reniform, hyaline, aseptate, 7–12 × 3–5 µm, apex with minute periclinal thickening
and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (24–)26–32(–36) × (3−)3.5−4.5(−5) µm
(av. 29 × 4 µm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and
microconidia not observed.
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Culture characteristics. Colonies fast growing (50−75 mm diam) on MEA after 1 wk at room temperature; surface umber to sepia
with abundant buff to white, woolly aerial mycelium and abundant sporulation on the aerial mycelium and colony surface; reverse
amber to sepia with abundant chlamydospores throughout the medium, forming microsclerotia.
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Specimens examined: Brazil, from soil, Jun. 1998, A.C. Alfenas (holotype CBS H-22765, culture ex-type CBS 111465 = CPC
1902). Colombia, La Paz, Rodal Seuiller, from soil, Jan. 1994, P.W. Crous, CBS 116108 = CPC 726.
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Notes: Calonectria parvispora is a new species in the Ca. brassicae complex (Lombard et al. 2009, Alfenas et al. 2015). The
macroconidia of Ca. parvispora [(24–)26–32(–36) × (3−)3.5−4.5(−5) µm (av. 29 × 4 µm)] are smaller than those of Ca. clavata
[(44–)50–70(–80) × (4−)5−6 µm (av. 65 × 5 µm); Crous 2002], Ca. brachiatica [(37–)40–48(–50) × 4−6 µm (av. 44 × 5 µm);
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Lombard et al. 2009], Ca. brassicae [(38–)40–55(–65) × (3.5−)4−5(−6) µm (av. 53 × 4.5 µm); Crous 2002], Ca. ecuadoriae [(45–
)48–55(–65) × (4−)4.5(−5) µm (av. 51 × 4.5 µm); Crous et al. 2006a], Ca. gracilipes [(35–)40–48(–60) × 4−5(−6) µm (av. 45 ×
4.5 µm); Crous 2002] and Ca. gracilis [(40–)53–58(–65) × (3.5−)4−5 µm (av. 56 × 4.5 µm); Crous 2002].
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Calonectria tucuruiensis L. Lombard & Crous, sp. nov. MycoBank MB820845. Fig. 17.
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Etymology. Name refers to Tucuruí, the region in Brazil from which this fungus was collected.
µm wide at the apical septum, terminating in a fusiform to ovoid to ellipsoid vesicle, 9–12 µm diam. Conidiogenous apparatus
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40–95 µm wide, and 40–90 µm long; primary branches aseptate, 19–32 × 4–7 µm; secondary branches aseptate, 10–28 × 3–5
µm; tertiary branches aseptate, 11–16 × 3–6 µm; quaternary branches aseptate, 8–14 × 3–4 µm each terminal branch
producing 2–4 phialides; phialides elongate doliiform to reniform, hyaline, aseptate, 8–17 × 3–5 µm, apex with minute periclinal
thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (51–)57–69(–71) ×
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(4−)4.5−5.5(−6) µm (av. 63 × 5 µm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless
slime. Mega- and microconidia not observed.
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Culture characteristics. Colonies fast growing (55−75 mm diam) on MEA after 1 wk at room temperature; surface cinnamon to
amber with sparse, buff to white, woolly aerial mycelium and abundant sporulation on the aerial mycelium and colony surface;
reverse sienna to amber with abundant chlamydospores throughout the medium, forming microsclerotia.
Specimen examined: Brazil, Tucuruí, from leaves of Eucalyptus tereticornis, 8 Aug. 1996, P.W. Crous (holotype CBS H-22777,
culture ex-type CBS 114755 = CPC 1403); ibid., CBS 116265 = CPC 3552.
Notes: Calonectria tucuruiensis is closely related to Ca. terricola (Fig. 11). The macroconidia of Ca. tucuruiensis [(51–)57–69(–
71) × (4−)4.5−5.5(−6) µm (av. 63 × 5 µm)] are larger than those of Ca. terricola [(40–)43–49(–53) × (3−)4−5(−6) µm (av. 46 ×
4.5 µm); Lombard et al. (2016)].
ACCEPTED MANUSCRIPT
Authors: L. Lombard & P.W. Crous
Ceratocystis Ellis & Halst., New Jersey Agric. Coll. Exp. Sta. Bull. 76: 14. 1890. Fig. 18.
Synonym: Rostrella Zimm., Meded. Lands Plantentuin 37: 24, 41. 1900.
Classification: Sordariomycetes, Hypocreomycetidae, Microascales, Ceratocystidaceae.
Type species: Ceratocystis fimbriata Ellis & Halst. Neotype: BPI 595863.
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DNA barcodes (genus): 60S, LSU, MCM7.
DNA barcodes (species): ITS, bt1, tef1, rpb2, ms204. Table 4.
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Ascomata perithecial, scattered or gregarious, immersed, partially embedded or superficial on the substrate; bases subglobose to
globose or obpyriform, brown to black, covered with undifferentiated hyphae; ostiolar necks central, long, tapering towards apex;
ascomatal apex straight or undulate, unbranched or branched, brown to black and becoming paler; ostiolar hyphae divergent or
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convergent, non-septate, straight, tapering towards apex, hyaline to light brown. Asci evanescent. Ascospores hyaline, 1-celled,
ellipsoidal with gelatinous sheath which gives hat-shaped impression, accumulating in white, creamy to yellow masses at tips of
necks. Conidiophores branched, straight or flexuous, hyaline to pale brown. Conidiogenous cells endophialidic, flask-shaped
(lageniform) producing various shapes of cylindrical conidia or tubular-form producing barrel-shaped (doliiform) conidia, either
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lageniform alone or both forms present. Conidia hyaline, 1-celled, doliiform to cylindrical. Aleurioconidia (in some literature as
chlamydospores) absent or present, pale brown to dark brown, pyriform, ellipsoidal to globose, singly or in chains.
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Culture characteristics: Colonies showing circular growth with undulate margins, mycelium submerged to aerial, colour ranging from
moderate yellowish brown to greyish or brownish olive when mature, releasing sweet fruity aroma. No growth on cycloheximide.
Optimal media and cultivation conditions: 2 % MEA incubated at 25 °C. Addition of thiamin stimulates the development of sexual
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morph.
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Hosts: Herbaceous root crops, Ipomea batatas (sweet potato), wounds or larval tunnels of woody angiosperms, Acacia, Annona,
Carya, Citrus, Coffea, Colocacia, Colophospermum, Combretum, Corymbia, Cunninghamia, Dalbergia, Eucalyptus, Coffea,
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Mangifera, Platanus, Populus, Prosopis, Punica, Quercus, Rapanea, Saccharum, Schizolobium, Schotia, Styrax, Syzygium,
Terminalia, Theobroma. Some known to be vectored by flies (Diptera), non-specific ambrosia beetles (Scolytinae), or nitidulid
beetles (Nitidulidae), but without specific insect associates.
Disease symptoms: Root rots, cankers and vascular stain.

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Notes: Ceratocystis sensu lato included a heterogeneous group of fungi classified under this generic name due to similar
morphology resulting from convergent evolution, despite their diverse ecological and biological features (Upadhyay 1981). The
group has recently been divided into seven more narrowly defined homogeneous genera, supported by multigene phylogenies,
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morphological similarities and ecological commonality (Wingfield et al. 2013a, De Beer et al. 2014). The family
Ceratocystidaceae includes nine genera, namely Ambrosiella, Ceratocystis, Chalaropsis, Davidsoniella, Endoconidiophora,
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Huntiella, Thielaviopsis, Meredithiella and Phialophoropsis (De Beer et al. 2014, Mayers et al. 2015). Ceratocystis sensu stricto
is now restricted to those species producing ascomata with smooth bases, ascospores with hat-shaped sheaths, and
thielaviopsis-like asexual morphs, which differentiate them from other genera (De Beer et al. 2014). Within Ceratocystis,
morphological differences between species are insignificant and phylogenies based on multiple gene regions are used to
distinguish them from each other (Fourie et al. 2015). The ITS region has been widely used for delimiting species of Ceratocystis
(Schoch et al. 2012). However, discovery of multiple ITS types within single species in the genus (Al Adawi et al. 2013, Naidoo et
al. 2013, Harrington et al. 2014) raised an awareness that the ITS region alone should not be applied to delimit species in
Ceratocystis, and that additional gene regions should also be considered. Loci such as bt1 and tef1 do not provide good species
resolution on their own, but provide strong support in combination with ITS (Fourie et al. 2015). The loci rpb2 and ms204 give
stronger resolution than tef1 and bt1, but also need to be used in combination with ITS (Fourie et al. 2015).
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References: Hunt 1956, Upadhyay 1981 (morphology); Nag Raj & Kendrick 1975, Paulin-Mahady et al. 2002 (asexual forms and
species); Kile 1993, Van Wyk et al. 2013 (pathogenicity); De Beer et al. 2013a (higher classification); De Beer et al. 2013b
(nomenclator); Wilken et al. 2013, Van der Nest et al. 2014a, b, Wingfield et al. 2015, 2016a, b (genomes); Wingfield et al.
2013a, De Beer et al. 2014 (generic definitions and phylogenetic relationships); Wingfield et al. 2013b (international spread).
Authors: I. Barnes, S. Marincowitz, Z.W. de Beer, & M.J. Wingfield
Cladosporium Link, Mag. Gesell. naturf. Freunde, Berlin 7: 37. 1816 (1815). Fig. 19.
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For synonyms see Bensch et al. (2012).
Classification: Dothideomycetes, Dothideomycetidae, Capnodiales, Cladosporiaceae.
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Type species: Cladosporium herbarum (Pers. : Fr.) Link. Lectotype: L 910.225-733. Epitype and ex-epitype culture: CBS H-
19853, CPC 12100 = CBS 121621.
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DNA barcodes (genus): LSU.
DNA barcodes (species): act and tef1; in a few cases tub2. Table 5. Fig. 20.
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Ascomata pseudothecial, black to red-brown, globose, inconspicuous and immersed beneath stomata to superficial, situated on
a reduced stroma, with 1(–3) short, periphysate ostiolar necks; periphysoids frequently growing down into cavity; ascomatal wall
consisting of 3–6 layers of textura angularis. Pseudoparaphyses frequently present in mature ascomata, hyaline, septate,
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subcylindrical. Asci fasciculate, short-stalked or not, bitunicate, subsessile, obovoid to broad ellipsoid or subcylindrical, straight to
slightly curved, 8-spored. Ascospores bi- to multiseriate, hyaline, obovoid to ellipsoid-fusiform, with irregular luminar inclusions,
mostly thick-walled, straight to slightly curved, frequently becoming brown and verruculose in asci, at times covered in mucoid
sheath. Dematiaceous hyphomycetes. In vivo: Mycelium internal or external, superficial; hyphae branched, septate, subhyaline
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to usually pigmented, smooth, sometimes slightly rough-walled to verruculose. Stromata absent to sometimes well-developed.
Conidiophores mononematous, usually macronematous, solitary, fasciculate, in small to large fascicles, loosely to densely
caespitose, usually erect, occasionally subdecumbent, decumbent or repent, straight to flexuous, unbranched or branched,
continuous to septate, subhyaline to usually distinctly pigmented, smooth to verruculose, proliferation holoblastic, occasionally
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enteroblastic (after a period when growth has stopped and then resumed), usually sympodial, rarely monopodial (sometimes
leaving coarse annellations from repeated enteroblastic proliferation). Conidiogenous cells integrated, terminal or intercalary,
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monoblastic or usually polyblastic, mostly sympodially proliferating, more or less cylindrical, geniculate-sinuous or nodulose,
sometimes with unilateral swellings; conidiogenous loci usually conspicuous, protuberant, composed of a central convex dome
surrounded by a more or less raised periclinal rim (coronate), thickened, refractive or barely to distinctly darkened; conidial
formation holoblastic. Conidia solitary or catenate, in unbranched or branched acropetal chains, amero- to phragmosporous,
shape and septation variable, usually subglobose, ovoid, obovoid, ellipsoid, fusiform, limoniform to cylindrical, aseptate or with
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several transverse eusepta, rarely with a single longitudinal septum, subhyaline to usually pigmented, smooth, verruculose,
verrucose, echinulate, cristate; hila protuberant, coronate, with a central convex dome and raised periclinal rim, thickened,
refractive to darkened; microcyclic conidiogenesis often occurring. In vitro: Stromata usually lacking. Conidiophores usually
solitary, arising terminally or laterally from plagiotropous or ascending hyphae, often longer than in vivo. Micronematous
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conidiophores, lacking in vivo, are often formed in culture. Conidial chains often longer than in vivo (species with solitary conidia
are often capable of forming conidial chains in culture).
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Culture characteristics: Colonies on SNA often grey olivaceous or olivaceous grey, reverse leaden grey or black, flat, velvety with
fluffy or cottony patches, margin irregular or undulate, aerial mycelium loose diffuse or more abundantly formed, often with
abundant submerged mycelium.
Optimal media and cultivation conditions: For morphological examinations SNA incubated under continuous near-ultraviolet light
at 25 °C proved to be best suited to promote sporulation. The sexual morph can be induced by inoculating plates of 2 % WA
onto which autoclaved stem pieces of Urtica dioica (European stinging nettle) are placed. Inoculated plates have to be incubated
on the laboratory bench for 1 wk, after that period they have to be further incubated at 10 °C in the dark for 1–2 mo to stimulate
sexual morph development.
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Hosts: Asparagaceae, Asteraceae, Fabaceae, Myrtaceae, Orchidaceae, Poaceae and many other hosts, including fungi and
insects.
Disease symptoms: Leaf spots, leaf blight, discolorations, necrosis, or shot-hole symptoms, on stems and fruits, but also
saprobic, endophytic or isolated from numerous substrates and environments, e.g. indoor environments, salterns and human and
animal infections.
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Notes: The monophyletic genus Cladosporium is well characterised by the coronate structure of its conidiogenous loci and
conidial hila, consisting of a central convex dome surrounded by a raised periclinal rim (David 1997, Braun et al. 2003). At the
moment it comprises about 200 species. Cladosporium was previously extremely heterogeneous and encompassed 772 names
assigned to this genus (Dugan et al. 2004). Heuchert et al. (2005) examined Cladosporium spp. dwelling on other fungi, and
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Schubert (2005) provided a comprehensive treatment of foliicolous species. Crous et al. (2007a) encompassed a series of
papers dealing with a reassessment and new circumscription of Cladosporium s. str. and treatments of several cladosporioid
genera. Bensch et al. (2012) published a taxonomic monograph of the genus Cladosporium which can be consulted for further
information on the history and many other aspects of this genus.
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Species delimitation in Cladosporium based on morphology alone is limited since many species have overlapping
characters. Some key differential features have been identified and detailed in a series of monographic papers (Schubert et al.
2007, Zalar et al. 2007, Bensch et al. 2010, 2012). The most relevant differential morphological traits are the shape, width and
complexity of conidiophores, the presence of ramoconidia, and the formation and ornamentation of conidia. However, given the
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overlapping of these features, and the need for standardisation using special culture media and scanning electron microscopy
procedures, the use of a molecular approach should be mandatory for correct identification of the species in this complex fungal
group (Sandoval-Denis et al. 2016).
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Three different species complexes are recognised within the genus, mainly based on morphology, and used for
practical purposes. The Cl. cladosporioides species complex is characterised by mainly narrowly cylindrical or cylindrical-oblong,
non-nodulose, mostly non-geniculate conidiophores and conidia with a quite variable surface ornamentation ranging from smooth
to irregularly verrucose-rugose or rough-walled (reticulate or embossed stripes under SEM); the Cl. herbarum species complex
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includes species mainly having nodulose conidiophores, with conidiogenesis confined to swellings, and verruculose, verrucose
or echinulate conidia; and the Cl. sphaerospermum complex is most remarkable due to forming numerous globose or
subglobose terminal and intercalary conidia with variable surface ornamentation and often poorly differentiated conidiophores in
most of the species (Bensch et al. 2012, 2015). Morphologically similar genera have been treated in Crous et al. (2007b).
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Members of Cladosporiaceae: Cladosporium, Graphiopsis, Neocladosporium, Rachicladosporium, Toxicocladosporium,

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Verrucocladosporium.
References: Braun et al. 2003 (sexual morph); Crous et al. 2007a, b (cladosporium-like genera); Schubert et al. 2007
(morphology, phylogeny Cl. herbarum complex); Zalar et al. 2007 (morphology, phylogeny Cl. sphaerospermum complex);
Bensch et al. 2010 (morphology, phylogeny Cl. cladosporioides complex); Bensch et al. 2012 (morphology, phylogeny and key of
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all Cladosporium species); Bensch et al. 2015 (morphology, additions to the three species complexes); Sandoval-Denis et al.
2016 (morphology, phylogeny of clinical samples).
Cladosporium chasmanthicola Bensch, U. Braun & Crous, sp. nov. MycoBank MB819978. Fig. 21.
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Etymology: Epithet composed of the name of the host genus, Chasmanthe, and -cola, dweller.
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Leaf spots solitary, distributed over leaf surface, amphigenous, ellipsoid, 1–2 mm diam, pale brown with dark red-brown margin,
some spots also associated with uredinia of Uromyces kentaniensis. On SNA: Mycelium loosely branched, filiform, narrowly
cylindrical-oblong or irregular in outline due to swellings and constrictions, 0.5–4 µm wide, septate, subhyaline or pale olivaceous
or olivaceous brown, almost smooth, verruculose, distinctly verrucose or irregularly rough-walled. Conidiophores solitary, formed
terminally or laterally from hyphae, straight or somewhat flexuous, macro- and micronematous; macronematous conidiophores
cylindrical, sometimes geniculate, often irregular in outline due to lateral outgrowths, swellings and constrictions (not connected
with conidiogenesis), mostly unbranched, 20–100(–140) × 3.5–5(–6) µm, up to 6 µm wide at the base, 1–6-septate, septa
sometimes in short succession, not constricted at septa, pale olivaceous or pale to medium olivaceous brown, smooth, walls
slightly thickened; micronematous conidiophores shorter, narrower and paler than macronematous ones, 15–30(–80) × 2–3 µm,
0–2-septate, subhyaline or pale olivaceous. Conidiogenous cells integrated, terminal and intercalary, 8–24 µm long, short
cylindrical or often irregular in outline due to lateral prolongations and shoulders and numerous conidiogenous loci often crowded
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at or towards the apex, up to eight loci in terminal cells, 1–3 loci in intercalary cells, loci conspicuous, subdenticulate, 1–2 µm
diam. Ramoconidia commonly formed, subcylindrical or irregular due to numerous loci at the distal end, 15–33 × 3–4.5 µm, 0–
1(–3)-septate, base broadly truncate, 2.5(–3.5) µm wide. Conidia numerously formed, especially small terminal and intercalary
conidia, in branched chains, branching in all directions with 1–3 conidia in the terminal unbranched part of the chain; terminal
conidia very small, ovoid or obovoid, very pale, subhyaline or pale olivaceous brown, 2.5–4.5 × 2–2.5(–3) µm (av. ± SD: 3.4 ±
0.6 × 2.2 ± 0.3), apex rounded; intercalary conidia ovoid, limoniform, ellipsoid or irregular due to lateral outgrowths, 4–10.5 × (2–
)3–3.5(–4) µm (av. ± SD: 7.2 ± 2.0 × 3.1 ± 0.5), aseptate, with 1–4 distal hila; secondary ramoconidia ellipsoid, subcylindrical or
irregular in outline due to numerous hila crowded at or towards the distal end, sometimes located on lateral shoulders or lateral
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prolongations, those formed on micronematous conidiophores shorter and narrower, (5–)8–23 × (2.5–)3–4.5 µm (av. ± SD: 13.3
± 5.4 × 3.5 ± 0.6), 0–1(–3)-septate, very pale olivaceous or pale olivaceous brown, smooth, walls unthickened, with (2–)3–6(–7)
distal scars; hila conspicuous, 0.5–2 µm diam, darkened-refractive and somewhat thickened; conidia sometimes germinating.
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Culture characteristics: Colonies on PDA reaching 28–35 mm diam after 2 wk, olivaceous grey, grey olivaceous with several
smoke-grey patches of dense, felty aerial mycelium, reverse leaden-grey to olivaceous grey, powdery, margin white, broad,
glabrous, colony centre somewhat folded and wrinkled, growth flat. Colonies on MEA attaining 29–35 mm diam, whitish, smoke-
grey to pale olivaceous grey, reverse greyish-sepia or olivaceous grey, velvety; margin glabrous, to somewhat feathery, radially
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furrowed, colony centre elevated, wrinkled and folded; aerial mycelium abundant, covering large parts of the colony surface,
dense, fluffy. Colonies on OA reaching 20–28 mm diam, olivaceous grey with patches of smoke-grey, grey olivaceous or
glaucous-grey towards margins, reverse leaden-grey to iron-grey, fluffy-felty; margin glabrous, undulate, colony centre somewhat
elevated; aerial mycelium loose, diffuse to dense and fluffy in a few spots. On all media without prominent exudates, sporulation
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profuse.
Material examined: South Africa, Western Cape Province, Cape Town, Brackenfell, Bracken Nature Reserve, isol. from leaf
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spots on Chasmanthe aethiopica, 25 Sep. 2012, A.R. Wood (holotype CBS H-23117, culture ex-type CBS XXXX = CPC 21300).
Note: Cladosporium chasmanthicola is closely related to Cl. acalyphae, but the latter species has much longer and narrower
conidiophores (150–430 × 3–4 µm) and smooth to loosely verruculose, irregularly verruculose-rugose or rough-walled conidia
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(Bensch et al. 2010).
Cladosporium kenpeggii Bensch, U. Braun & Crous, sp. nov. MycoBank MB819979. Fig. 22.
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Etymology: Named after Dr Ken Pegg (Agri-Science and Biosecurity Queensland, Australia), the collector of the species, who
celebrates his 80th birthday this year.
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On SNA: Superficial mycelium sparingly formed, unbranched, occasionally branched, 2.5–3.5 µm wide, septate, without
swellings and constrictions, pale olivaceous brown, almost smooth to verruculose. Conidiophores macronematous, solitary,
arising mostly terminally, rarely laterally from hyphae, narrowly cylindrical-oblong, usually unbranched, non-nodulose, sometimes
slightly geniculate towards the apex, 15–100(–150) × 2.5–4 µm, 0–2(–5)-septate, pale to medium olivaceous brown, smooth or
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minutely verruculose, walls unthickened or slightly thickened. Conidiogenous cells integrated, mainly terminally, narrowly
cylindrical-oblong, 16–60 µm long, with (1–)2–3(–4) distal conidiogenous loci, crowded at or towards the apex, sometimes
slightly geniculate due to sympodial proliferation, conidiogenous loci conspicuous, 1–2 µm diam, thickened and darkened-
refractive, sometimes cells germinating. Ramoconidia frequently formed, (17–)25–55 × 3–4(–5) µm, 0–1(–2)-septate, base
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broadly truncate, 2–4 µm wide, unthickened, somewhat darkened-refractive. Conidia numerous, formed in branched chains,
branching in all directions, up to eight conidia in the terminal unbranched part of the chain; small terminal conidia obovoid or
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ellipsoid, 4.5–6 × (2–)2.5–3(–3.5) µm (av. ± SD: 5.0 ± 0.5 × 2.7 ± 0.5), apex rounded; intercalary conidia ovoid or ellipsoid, 5.5–
15 × (2–)2.5–3.5 µm (av. ± SD: 8.9 ± 3.2 × 3.0 ± 0.4), aseptate, with 1–2 distal hila, attenuated towards apex and base;
secondary ramoconidia subcylindrical or cylindrical, 14.5–35 × 3–4(–5) µm (av. ± SD: 22.4 ± 5.8 × 3.8 ± 0.6), 0–1(–2)-septate,
with 2–3 distal hila, pale olivaceous or pale olivaceous brown, smooth, walls slightly thickened; hila conspicuous, subdenticulate,
1–2 µm diam, somewhat thickened and darkened-refractive; microcyclic conidiogenesis occurring, conidia often germinating,
often with more than one germination tube, tubes sometimes even branched, filiform or irregular in outline.
Culture characteristics: Colonies on PDA attaining 35–47 mm diam after 2 wk, olivaceous to olivaceous grey, dull green towards
margins, reverse iron-grey, greyish-blue towards margins, powdery to fluffy, margin feathery, growth flat, aerial mycelium loose,
diffuse, dense, fluffy and high in a few spots, pale olivaceous grey, sporulation profuse, without prominent exudates. Colonies in
MEA reaching 39–48 mm diam, grey olivaceous, reverse iron-grey, velvety, margin white, broad, feathery, colony centre
elevated, wrinkled and folded, radially furrowed, aerial mycelium loose, diffuse to denser and fluffy, several small but prominent
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exudates formed, sporulation profuse. Colonies on OA grey olivaceous when sporulating profusely, whitish or smoke-grey due to
aerial mycelium, reverse leaden grey or iron-grey, some parts with a cinnamon margin (both on top and reverse), powdery to
fluffy-felty, aerial mycelium forming high strains, growth flat, without exudates.
Material examined: Australia, New South Wales, Upper Dungay, 28°15’ S 153°21’ E, isol. from leaves of Passiflora edulis, 20
Oct. 1999, K.G. Pegg & J. Dawes, FP 24737 (holotype BRIP 26701a, isotype CBS H-23118, culture ex-type CBS XXXX = CPC
19248 = BRIP 26701a).
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Notes: The smooth conidia formed in long branched chains and the frequently formed ramoconidia remind one of Cl.
cladosporioides and Cl. iranicum. However, compared with Cl. cladosporioides, Cl. kenpeggii possesses much shorter
macronematous conidiophores, micronematous conidiophores are not formed and the conidia are very often germinating and
forming secondary conidiophores. In Cl. iranicum the conidia also germinate quite often, but the conidiophores are longer,
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ramoconidia are shorter and somewhat wider with a narrower base and intercalary conidia are shorter and narrower (Bensch et
al. 2012).
Cladosporium maracuja, described from Passiflora in Brazil in 1935, is morphologically quite similar in having smooth,
catenate, 0–1-septate conidia and short conidiophores but since it is only known from the type specimen it is kept separate. The
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conidia of this species are shorter and wider and the conidiophores wider in vivo.
Cladosporium welwitschiicola Bensch, U. Braun & Crous, sp. nov. MycoBank MB819980. Fig. 23.
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Etymology: Epithet composed of the name of the host genus, Welwitschia, and -cola, dweller.
On SNA: Superficial mycelium abundantly formed, filiform to cylindrical-oblong, unbranched or loosely branched, (0.5–)1–4 µm
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wide, sometimes slightly swollen or constricted, septate, subhyaline, pale olivaceous or pale olivaceous brown, surface
ornamentation variable, smooth or almost so, asperulate, verruculose or sometimes even verrucose, walls unthickened,
sometimes forming ropes of several hyphae. Conidiophores macronematous, solitary, erect, straight or slightly flexuous,
terminally or laterally formed from hyphae, narrowly cylindrical-oblong, non-nodulose, occasionally once geniculate towards the
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apex due to sympodial proliferation, 25–90 × (2.5–)3–4.5(–5.5) µm, 0–3(–4)-septate, not constricted at septa, pale to medium
olivaceous brown, smooth, sometimes verruculose or irregularly rough-walled towards the base, walls thickened. Conidiogenous
cells integrated, usually terminal, cylindrical, 12.5–42 µm long, with 2–4 conidiogenous loci crowded at the apex, conspicuous,
subdenticulate, 1–2 µm diam, somewhat thickened and darkened-refractive. Ramoconidia not observed. Conidia catenate, in
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branched chains, branching in all directions, (1–)2–5(–6) conidia in the terminal unbranched part of the chain; small terminal
conidia obovoid, ellipsoid, 4–5 × 2.5–3.5 µm (av. ± SD: 4.6 ± 0.6 × 3.0 ± 0.4), rugulose, broadly rounded at the apex; intercalary
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conidia ellipsoid, limoniform or fusiform, sometimes irregular in outline due to surface ornamentation, slightly to distinctly
attenuated towards apex and base, 5–11 × (2.5–)3–3.5(–4) µm (av. ± SD: 7.4 ± 1.9 × 3.2 ± 0.4), 0–1-septate, with 1–3 distal
hila, rugulose to distinctly rugose; secondary ramoconidia ellipsoid or subcylindrical, often 3–4 formed at the apex of
conidiophores, 8.5–21 × 3–4(–4.5) µm (av. ± SD: 14.6 ± 3.6 × 3.5 ± 0.4), 0–2(–3)-septate, mostly 1-septate, septum median or
somewhat in the lower half, pale to medium olivaceous brown or dingy brown, smooth or almost so to rugulose, walls somewhat
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thickened; hila conspicuous, 0.5–2 µm diam; microcyclic conidiogenesis not occurring.
Culture characteristics: Colonies on PDA reaching up to 78 mm diam after 2 wk, olivaceous grey, fawn at margins, reverse
mouse-grey, vinaceous-buff at margins, fluffy; margins feathery, growth low convex. Colonies on MEA reaching up to 80 mm
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diam, smoke-grey, pale olivaceous grey to olivaceous grey, reverse iron-grey, fluffy; margin feathery. Colonies on OA reaching
up to 72 mm diam, smoke-grey and pale olivaceous grey, reverse iron-grey, fluffy. On all three media aerial mycelium abundantly
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formed covering large parts of the colony, loose to dense, high, fluffy; without prominent exudates, sporulation profuse.
Material examined: Namibia, isol. from dead leaf of Welwitschia mirabilis, 1 Oct. 2010, M.J. Wingfield (holotype CBS H-23119,
culture ex-type CBS XXXX = CPC 18648).
Notes: With its rugulose or distinctly rugose conidia and relatively short conidiophores, Cl. welwitschiicola reminds one of Cl.
exasperatum and Cl. verrucocladosporioides, but the latter two species differ in forming ramoconidia and in having longer and
slightly wider small, intercalary and secondary ramoconidia. Phylogenetically, it is closest to Cl. gamsianum and Cl.
pseudocladosporioides, but these species are easily distinguishable in having smooth and narrower conidia (Bensch et al. 2012).
Authors: K. Bensch, U. Braun, J.Z. Groenewald & P.W. Crous

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Colletotrichum Corda, in Sturm, Deutschl. Fl., 3 Abt. (Pilze Deutschl.) 3: 41, tab. 21. 1831. Figs 24, 25.
Synonyms: Glomerella Spauld. & H. Schrenk, Science, N.Y. 17: 751. 1903. For additional synonyms see Sutton (1980).
Classification: Sordariomycetes, Hypocreomycetidae, Glomerellales, Glomerellaceae.
Type species: Colletotrichum lineola Corda. Holotype: PRM 155463. Epitype and ex-epitype culture: CBS H-20362, CBS 125337.
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DNA barcodes (genus): ITS.
DNA barcodes (species): act, ApMat, apn2, cal, chs-1, gapdh, gs, his3, sod2, tub2. Tables 6, 7. Fig. 26.
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Ascomata solitary or gregarious, globose to subglobose, dark brown to black, ostiole periphysate; ascomatal wall composed of pale
to medium brown flattened cells of textura angularis. Hamathecium composed of hyaline, septate paraphyses, branched at the
bases, rounded at the tips. Asci 8-spored, unitunicate, cylindrical to subfusoid, short pedicellate, with an inamyloid, refractive ring at
the apex. Ascospores uni- to biseriate, aseptate, hyaline, smooth-walled, cylindrical, oval, fusiform or rhomboid, straight or curved,
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one end ± acute and one end rounded or both ends rounded. Conidiomata acervular, conidiophores and setae formed on cushions
of pale to medium brown, roundish to angular cells, but very variable in culture, ranging from sporodochia-like aggregations of
conidiophores directly on hyphae to closed conidiomata that open by rupture. Setae may or may not be present, straight, pale to
dark brown, sometimes hyaline towards the tip, smooth-walled, verruculose to verrucose, 1–8-septate, base cylindrical, conical or
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slightly inflated, tip ± rounded to ± acute. Conidiophores hyaline to pale brown, simple or septate, branched or unbranched, smooth-
walled, sometimes verruculose. Conidiogenous cells enteroblastic, hyaline to pale brown, smooth-walled, discrete, cylindrical,
ellipsoidal, doliiform or ampulliform, collarette usually distinct, periclinal thickening visible to conspicuous, sometimes extending to
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form new conidiogenous loci (percurrent) or surrounded by a gelatinous coating. Conidia hyaline, smooth-walled, aseptate,
cylindrical, clavate, fusiform, sometimes ellipsoidal to ovoid, straight or curved, apex rounded to acute, sometimes with a filiform
appendage, base rounded to truncate, sometimes with a prominent hilum. Appressoria single or in small groups, pale to dark brown,
with a globose, elliptical, clavate, navicular or irregular outline and an entire, undulate or lobate edge.
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Culture characteristics: Colonies on PDA flat, with an entire to irregular margin, grey to dark in centre, aerial mycelium, if present,
sparse to cottony, white, buff or pale olivaceous green in colour. Reverse first white, with age turning grey to black, olivaceous green
or smoke-grey, concentric rings can be observed. Conidia in mass orange, salmon, pink, white or pale grey. Colonies on SNA flat,
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with an entire, erose, dentate or undulate margin, aerial mycelium, if present, hyaline, white, honey colour, iron-grey, greenish black
or dark olivaceous. Reverse hyaline, honey, pale olivaceous grey to iron-grey. Colonies on OA flat, with an entire to umbonate
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margin, aerial mycelium, if present, white, buff, rosy-buff, very pale glaucous, hyaline or honey coloured. Reverse buff, rosy-buff,
flesh, pale luteous, honey coloured, smoke-grey or olivaceous grey. Conidia in mass salmon, saffron, orange, white or rosy-buff.
Optimal media and cultivation conditions: For morphological examinations of the asexual morphs SNA amended with double
autoclaved stems of Anthriscus sylvestris (wild chervil) and autoclaved filter paper placed onto the agar surface and incubated
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under near-ultraviolet light with a 12 h photoperiod at 20 °C for 10 d proved to be best suited to promote sporulation of most of
the species, while for other species, culturing on OA or PDA incubated under the same conditions is more suitable. Plates
sometimes need to be incubated for 1–2 mo to allow development of the sexual morph.
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Hosts: Occurs on a wide range of plant families.
Disease symptoms: Anthracnose disease symptoms include defined, often sunken necrotic spots on leaves, stems, flowers or fruits.
Additionally, crown and stem rots, ripe rot, seedling blights and brown blotch are caused by species of this genus.
Notes: Due to the overlapping morphological characters, species delimitation based on morphology alone is hardly possible in
Colletotrichum. Multilocus sequence analyses combined with a polyphasic approach, including the analysis of geographical,
ecological and morphological data, is generally suggested for species differentiation within the genus Colletotrichum (Cai et al.
2009). This approach resulted in the differentiation of almost 200 species, most of them belonging to species complexes. Due to
simultaneous studies in the genus by different researchers, the sets of loci used for differentiating species vary among the different
species complexes. ITS, gapdh, chs-1, act, his3 and tub2 (with some also gs or cal) gene regions have been used for studying
species within the Col. acutatum, boninense, dematium, destructivum, gigasporum, orbiculare, spaethianum and truncatum species
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complexes (Cannon et al. 2012, Damm et al. 2012a, b, 2013, 2014, Liu et al. 2014, Jayawardena et al. 2016b), while gs, cal and
sod2 were additionally applied for the species differentiation within the Col. gloeosporioides species complex (Weir et al. 2012)
(Table 6). In contrast, Crouch et al. (2009b) and Crouch (2014) applied ITS, sod2, apn2 and Mat1/apn2 (= ApMat), to study the Col.
graminicola and Col. caudatum species complexes (Table 7). Silva et al. (2012) and Sharma et al. (2015) emphasised the use of
ApMat in Colletotrichum species delimitation because of its high resolution within the Col. gloeosporioides species complex
compared to previously used loci. Liu et al. (2015b, 2016) applied different sets of loci and different phylogenetic methods on a large
set of closely related Colletotrichum strains/species belonging to this complex and revealed that ApMat should be combined with
other loci to achieve satisfactory species delimitation in the Col. gloeosporioides complex.
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Because different sets of loci are used in different species complexes and the resolution of species differs depending on
both locus and species, there is no agreement among the mycologists on the locus or loci to use for species identification/barcoding.
For example, most species in the Col. acutatum complex can be separated by tub2 sequences (Damm et al. 2012b), while species
in the Col. gloeosporioides complex can be identified with a combination of ApMat and gs sequences (Liu et al. 2015b). Research to
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select better genetic markers and the best secondary barcoding gene(s) is still ongoing.
References: Cannon et al. 2012 (species complexes); Crouch et al. 2009b, Crouch 2014 (phylogeny); Damm et al. 2009, 2012a,
b, 2013, 2014, Weir et al. 2012, Liu et al. 2014 (morphology, phylogeny).
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Colletotrichum sydowii Damm, sp. nov. MycoBank MB820688. Fig. 27.
Etymology: The species epithet is derived from Hans Sydow (1879–1946), a German mycologist who described several
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Colletotrichum species including one on Sambucus, host from which this fungus was isolated.
Sexual morph not observed. Asexual morph on SNA: Vegetative hyphae 1.5–9.5 µm diam, hyaline to pale brown, smooth-
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walled, septate, branched. Chlamydospores not observed. Conidiomata absent, conidiophores and setae formed directly on
hyphae. Setae medium brown, smooth-walled, upper part verrucose, 60–115 µm long, 2–4-septate, base cylindrical, 4–6 µm
diam, tip ± acute to ± rounded. Conidiophores hyaline to pale brown, smooth-walled to verrucose, septate, branched, to 50 µm
long. Conidiogenous cells hyaline to pale brown, smooth-walled to verrucose, cylindrical to clavate, 13–28 × 4–5 µm, with a
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gelatinous coating, opening 1–2 µm diam, collarette ≤ 0.5 µm long, periclinal thickening visible. Conidia hyaline, smooth-walled,
aseptate, straight, slightly clavate to cylindrical, with one end round and the other truncate, (17–)17.5–19.5(–21) × 5–5.5 µm,
mean ± SD = 18.3 ± 0.9 × 5.2 ± 0.2 µm, L/W ratio = 3.5. Appressoria single, medium brown, smooth-walled, subglobose,
elliptical or irregular in outline, with a strongly lobate margin, (7.5–)9–14(–17.5) × (5.5–)7–10.5(–12) µm, mean ± SD = 11.4 ±
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2.4 × 8.6 ± 1.8 µm, L/W ratio = 1.3, appressoria of strain CBS 132889 shorter, measuring (7.5–)8.5–12.5(–14) × (6.5–)7.5–11(–
13) µm, mean ± SD =10.6 ± 1.9 × 9.1 ± 1.8 µm, L/W ratio = 1.2. Asexual morph on Anthriscus stem: Conidiomata,
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conidiophores and setae formed on pale brown, angular cells, 3.5–8 µm diam; setae medium brown, verruculose to verrucose,
30–80 µm long, (1–)2–3-septate, base conical to ± inflated, 4.5–7.5 µm diam, tip ± acute to ± rounded. Conidiophores pale
brown, smooth-walled, septate, branched, to 20 µm long. Conidiogenous cells pale brown, smooth-walled, cylindrical to
doliiform, 6.5–18 × 5–6.5 µm, opening 1.5–2 µm diam, collarette 0.5–1 µm long, periclinal thickening distinct. Conidia hyaline,
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smooth-walled, aseptate, straight, cylindrical, with one end round and the other truncate, (14–)15.5–18.5(–20.5) × 5–6 µm, mean
± SD = 17.0 ± 1.6 × 5.5 ± 0.3 µm, L/W ratio = 3.1, conidia of strain CBS 132889 larger, measuring (15.5–)17–20(–20.5) × (4.5–
)5–5.5(–6) µm, mean ± SD = 18.6 ± 1.4 × 5.4 ± 0.3 µm, L/W ratio = 3.5.
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Culture characteristics: Colonies on SNA flat with entire margin, hyaline to honey, filter paper and Anthriscus stem partly pale to
dark grey, agar medium partly covered with short felty whitish aerial mycelium, reverse similar; growth 27.5–29.5 mm diam in 1
wk (≥ 40 mm diam in 10 d). Colonies on OA flat with entire margin; olivaceous buff to greenish olivaceous, partly covered with
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short felty whitish aerial mycelium and grey conidiomata, saffron to salmon conidial masses in the centre, reverse primrose, rosy-
buff to grey olivaceous, growth 26–28 mm diam in 1 wk (≥ 40 mm in 10 d). Conidia in mass saffron to salmon.
Material examined: Taiwan, from leaves of Sambucus sp., 18 Dec. 2011, P.W. Crous (holotype CBS H-21509, culture ex-type
CBS 135819 = CPC 20071); ibid., CBS 132889 = CPC 20070.
Notes: Colletotrichum sydowii is to date only known from Sambucus leaves in Taiwan. The conidia of this species resemble
those of several species, e.g. Col. clidemiae, Col. australe and Col. parsonsiae belonging to the Col. gloeosporioides, acutatum
and boninense species complexes (Damm et al. 2012 a, b, Weir et al. 2012). Based on DNA sequences, Col. sydowii does not
belong to any known Colletotrichum species complex; the closest matches in blastn searches of the ex-holotype strain in
GenBank with sequences of the different loci resulted in sequences of strains from different species complexes. The ITS
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sequence is 99 % (1–2 nucleotide difference) identical to those of "Col. gloeosporioides" strain EECC-453 from Ensete
ventricosum (GenBank KP942898, from an unpublished study in Ethiopia by Y. Mulugeta et al.) and "Fungal sp." strain TCPR
106 from a photosynthetic root of Tinospora cordifolia in India (GenBank JX951175, R.N. Kharwar et al., unpubl. data), as well as
93–94 % identical to the ITS sequences of several species of the Col. gigasporum and gloeosporioides complexes and Col.
coccodes. The tub2 sequence is 83 % (> 130 nucleotides difference) identical to those of Col. vietnamense strain CBS 125477
(GenBank KF687876), Col. gigasporum strain CBS 109355 (GenBank KF687870), both belonging to the Col. gigasporum
complex (Liu et al. 2014), and Col. dracaenophilum isolate DMM 170 (GenBank KJ653227, Macedo et al. 2016). The his3
sequence is 90–91 % identical with species from different complexes, including Col. constrictum strain CBS 128503 (GenBank
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JQ005498, Col. boninense complex, Damm et al. 2012b) and Col. vietnamense strain CBS 125477 (GenBank KF687854, Col.
gigasporum complex, Liu et al. 2014) as well as Col. yunnanense strain CBS 132135 (GenBank JX546755, Liu et al. 2014). The
chs-1 sequence is 89–91 % identical with e.g. Col. dacrycarpi strain CBS 130241 (GenBank JQ005410, Col. boninense complex,
Damm et al. 2012b) and Col. grevilleae strain CBS 132879 (GenBank KC296987, Col. gloeosporioides complex, Liu et al. 2013).
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Closest match with the act sequence is Col. magnisporum strain CBS 398.84 with 82 % identity (GenBank KF687803, Col.
gigasporum complex, Liu et al. 2014). There is no species with more than 52 % query cover to the gapdh of Col. sydowii.
There is one Colletotrichum species that was previously described from Sambucus, Col. sambuci Syd. 1942, that
caused fruit anthracnose of S. nigra in Germany. Sydow (1942) regarded Gloeosporium fructigenum f. sambuci Müll.-Thurg.
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1922, described from S. nigra in Switzerland, as a synonym of Col. sambuci. Conidia of Col. sambuci are cylindrical, elongate
ellipsoidal to clavate with one end rounded tapering to the other slightly acute end, measuring 13–20 × 4.5–6 µm. They have
similar dimensions as those of Col. sydowii, however it is unlikely that the fungus collected from Sambucus leaves in Taiwan is
identical with the fruit anthracnose pathogen of black elderberry in Europe, as the morphological characters apply to many
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Colletotrichum species and all molecular data suggest a species in the Col. acutatum species complex. Based on ITS
sequences, Benduhn et al. (2011) and Michel et al. (2013) identified Col. acutatum (s. lat.) as causal agent of the fruit
anthracnose of S. nigra in Germany and Switzerland, respectively. As part of the multilocus alignment of the Col. acutatum
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complex, Col. godetiae was identified from fruits of S. nigra in the Netherlands (Damm et al. 2012b). The ITS sequences of "Col.
cf. gloeosporioides" strain BBA 67435 (GenBank AJ301931) from S. nigra in Germany and of strain BBA 71332 (GenBank
AJ301972) also from Sambucus (Nirenberg et al. 2002) are identical with that of strain CBS 862.70; these isolates are probably
also Col. godetiae. Conidia of the Col. godetiae strain from the Netherlands (CBS 862.70) measure (8–)14–19(–24) × (4–)4.5–
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5(–5.5) µm on SNA. The shape of this species can be either fusiform or clavate with only one acute end, depending on the strain
(Damm et al. 2012b) and there were no setae observed. Strain BBA 67435 also had conidia pointed only at one end (Nirenberg
et al. 2002), which agrees with the shape of Col. sambuci. It is possible that Col. sambuci is an older name of Col. godetiae,
however, we cannot confirm this here as we could not locate the type material.
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Another species was described from Sambucus in Canada, Vermicularia sambucina (Ellis & Dearness 1897), which
however has curved conidia with different dimensions (24 × 3–3.5 µm, Saccardo & Sydow 1899). In contrast, Col. fructicola, a
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species with considerably shorter conidia belonging to the Col. gloeosporioides complex, was isolated from leaves with
anthracnose leaf spot symptoms on S. ebulus in Iran (Arzanlou et al. 2015).
Authors: U. Damm, R.S. Jayawardena, L. Cai

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Coniella Höhn. Ber. Deutsch. Bot. Ges. 36: 316. 1918. Fig. 28.
Synomyms: Schizoparme Shear, Mycologia 15: 120. 1923.
Baeumleria Petr. & Syd., Repert. Spec. Nov. Regni Veg. Beih. 42: 268. 1927.
Pilidiella Petr. & Syd., Repert. Spec. Nov. Regni Veg. Beih. 42: 462. 1927.
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Anthasthoopa Subram. & K. Ramakr., Proc. Indian Acad. Sci., Sect. B 43: 173. 1956.
Cyclodomella Mathur et al., Sydowia 13: 144. 1959.
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Embolidium Bat., Brotéria, N.S. 33(3–4): 194. 1964 non Sacc. 1978.
Classification: Sordariomycetes, Sordariomycetidae, Diaporthales, Schizoparmaceae.
Type species: Coniella fragariae (Oudem.) B. Sutton (syn. Coniella pulchella Höhn.). Neotype and ex-neotype culture: CBS H-
10697, CBS 172.49 = CPC 3930.
DNA barcodes (genus): LSU, rpb2.
DNA barcodes (species): ITS, rpb2, tef1. Table 8.
Ascomata brown to black, collapsed collabent, erumpent, becoming superficial, globose, papillate, with central periphysate ostiole.
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Paraphyses lacking. Asci clavate to subcylindrical, with distinct apical ring, free at maturity. Ascospores ellipsoid, aseptate, hyaline,
at times becoming pale brown at maturity, smooth, with or without mucoid caps. Conidiomata pycnidial, immersed to semi-
immersed, unilocular, glabrous, ostiolate; ostiole central, circular or oval, often situated in a conical or rostrate neck; conidiomatal
wall brown to dark brown or black, composed of thin, pale brown textura angularis on exterior, and hyaline, thin-walled, textura
prismatica in the inner layers except at base, which has a convex, pulvinate tissue of hyaline textura angularis giving rise to
conidiophores or conidiogenous cells. Conidiophores mostly reduced to conidiogenous cells, occasionally septate and branched at
base, invested in mucus. Conidiogenous cells discrete, cylindrical, subcylindrical, obclavate or lageniform, hyaline, smooth-walled,
proliferating percurrently, with visible periclinal thickening. Conidia ellipsoid, fusiform, globose, napiform or naviculate with a truncate
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base and an obtuse to apiculate apex, unicellular, thin- or thick-walled, smooth, hyaline, pale yellowish, pale yellowish brown, or
olivaceous brown to brown, sometimes with a longitudinal germ-slit, with or without a mucoid appendage extending from apex to
base on one side; basal hila with or without a short tubular basal appendage. Spermatophores formed in same conidioma, hyaline,
smooth, 1-septate with several apical conidiogenous cells, or reduced to conidiogenous cells. Spermatogenous cells hyaline,
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smooth, lageniform to subcylindrical, with visible periclinal thickening. Spermatia hyaline, smooth, rod-shaped with rounded ends
(adapted from Crous et al. 2014a).
Culture characteristics: On PDA produces white aerial mycelium with or without black conidiomata. On OA frequently produces white
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aerial mycelium with black conidiomata, but sometimes with luteous to orange zones.
Optimal media and cultivation conditions: On 2 % MEA, PDA and OA, at 25 °C under continuous near-ultraviolet light to promote
sporulation.
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Hosts: Wide variety of hosts, e.g. Eucalyptus (Myrtaceae), Fragaria (Rosaceae), Hibiscus (Malvaceae), Psidium (Myrtaceae), Punica
(Lythraceae), Terminalia (Combretaceae) and Vitis (Vitaceae).
Disease symptoms: Foliar, fruit, stem and root lesions, white rot and crown rot.
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Notes: In the most recent revision of the members of Schizoparmaceae, Pilidiella and its sexual morph Schizoparme were
synonymised under Coniella because the type species of the three genera clustered in a single well-supported clade in a
phylogenetic analysis based on four different loci (LSU, ITS, rpb2 and tef1) (Alvarez et al. 2016). Coniella and Pilidiella were
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initially distinguished by von Arx (1981) based on their conidial pigmentation, being hyaline to pale brown in Pilidiella and dark
brown in Coniella. However, Alvarez et al. (2016) demonstrated that conidial colour evolved multiple times throughout the clade
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representing Coniella, and therefore rejected it as a character for generic delimitation in Schizoparmaceae. Sutton (1980) and
Nag Raj (1993) also considered Coniella and Pilidiella synonymous since both genera presented identical conidiomata,
conidiogenesis and orientation of conidiophores. However, Castlebury et al. (2002) demonstrated a separation of both genera in
a phylogenetic study based on LSU sequences. This was further supported by van Niekerk et al. (2004b) based on their LSU,
ITS and tef1 sequence data. Based on these molecular studies, together with the difference in conidial pigmentation reported by
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von Arx (1981), Wijayawardene et al. (2016) regarded Coniella and Pilidiella as two separate genera in a recent study of
dematiaceous coelomycetes. By adding more loci and expanding the number of isolates studied, Alvarez et al. (2016) resolved
the conflict that lasted a few decades regarding the classification of these genera.
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References: Van Niekerk et al. 2004b, Crous et al. 2014a, Alvarez et al. 2016 (morphology and phylogeny).
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Coniella duckerae H.Y. Yip, Trans. Brit. Mycol. Soc. 89: 587. 1987. Fig. 29.
Description and illustration: Yip (1987).
Material examined: Australia, Victoria, Wilson’s Promontory, Five Mile Road, on rhizosphere of Lepidospermum concavum,
unknown collector and date (holotype DAR 55703, isotype VPRI 13689, culture ex-type VPRI 13689 = CBS 142045).
Notes: Coniella duckerae was excluded from the study of Alvarez et al. (2016), as no ex-type culture was available. However, the
original culture was recently revived, and DNA barcodes could thus be generated for inclusion in this study.
Coniella hibisci (B. Sutton) Crous, comb. nov. MycoBank MB820811. Fig. 30.
Basionym: Coniella musaiaensis var. hibisci B. Sutton, The Coelomycetes (Kew): 420. 1980.
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Plant pathogenic. Conidiomata separate, immersed or superficial, globose to depressed, initially appearing hyaline, becoming
olivaceous to black with age, with plate-like structures, up to 350 µm diam; ostiole central, 40–80 µm diam; conidiomatal wall
consisting of 2–4 layers of medium brown textura angularis. Conidiophores densely aggregated, slightly thicker, subulate, simple,
frequently branched above, reduced to conidiogenous cells, or with 1–2 supporting cells, 25–35 × 3–5 µm. Conidiogenous cells
simple, hyaline, smooth, tapering, 8–15 × 2.5–3 µm, 1.5–2 µm wide at apex, surrounded by a gelatinous coating, with visible
periclinal thickening. Conidia hyaline to pale yellowish brown with age, fusoid to ellipsoidal, inequilateral, apex acutely rounded,
widest at middle tapering to slightly truncate base, smooth-walled, mono- to multiguttulate, germ slits absent, (10–)11–13(–15) ×
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(3–)3.5–4(–5) µm (l : w = 3.4), with a mucoid appendage alongside conidium.
Culture characteristics: Colonies on MEA surface dirty white, with prolific black conidial masses spreading from centre. On OA
and PDA surface dirty white with profuse black conidiomata and sparse aerial mycelium.
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Material examined: Africa, from Hibiscus sp., unknown date, A.R. Rossman (epitype designated here BPI 748426,
MBT376042, culture ex-epitype CBS 109757 = ARS 3534). Nigeria, on leaves of Hibiscus esculentus, 25 Jul. 1967, Arny
(holotype IMI 129200).
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Notes: The morphology of the present African ex-epitype strain from Hibiscus sp. (CBS 109757 = ARS 3534) compares well with
that of the holotype of Coniella musaiaensis var. hibisci, which was described from Hibiscus esculentus collected in Nigeria. A
new combination is therefore proposed, elevating it to species rank. Presently there are still no cultures available of Con.
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musaiaensis, and further collections from Bauhinia reticulata (Sierra Leone) need to be made to resolve its phylogeny. Coniella
hibisci is also morphologically similar to Con. javanica (on Hibiscus sabdariffa, Indonesia), although they are phylogenetically
divergent (Alvarez et al. 2016).
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Authors: Y. Marin-Felix, J. Edwards, A.Y. Rossman & P.W. Crous
Curvularia Boedijn, Bull. Jard. Bot. Buitenzorg, 3 Sér. 13: 123. 1933. Fig. 31.
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Synonyms: Malustela Bat. & J.A. Lima, Publ. Inst. Micol. Recife 263: 5. 1960.
Curvusporium Corbetta as “Curvosporium”, Riso 12: 28, 30. 1963.
Pseudocochliobolus Tsuda, et al., Mycologia 69: 1117. 1978.
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Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Pleosporaceae.

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Type species: Curvularia lunata (Wakker) Boedijn. Ex-neotype culture: CBS 730.96.
DNA barcodes (species): ITS, gapdh, tef1. Table 9. Fig. 32.

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Ascomata pseudothecial, mostly globose to ellipsoidal, sometimes flask-shaped or flattened on hard substrata, brown or black,
immersed, erumpent, partially embedded or superficial, free or developing on a basal columnar or flat stroma, smooth or covered
with vegetative filaments; ostiole central, papillate or with a sub-conical, conical, paraboloid or cylindrical neck; ascomatal wall
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comprising pseudoparenchymatous cells of equal thickness or slightly thickened at apex of the ascoma. Hamathecium comprising
septate, filiform, branched pseudoparaphyses. Asci bitunicate, clavate, cylindrical-clavate or broadly fusoid, straight or slightly
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curved, thin-walled, fissitunicate, often becoming more or less distended prior to dehiscence, short pedicellate, rounded at the apex.
Ascospores multiseriate, filiform or flagelliform, hyaline or sometimes pale yellow or pale brown at maturity, septate, helically coiled
within ascus, degree of ascospore coiling moderate to very strongly coiled, often with a mucilaginous sheath. Conidiophores straight
to flexuous, often geniculate, multiseptate, usually simple, sometimes branched, smooth to verruculose, macronematous,
mononematous, sometimes nodose, cylindrical. Conidiogenous nodes cylindrical, integrated, terminal and intercalary, proliferating
sympodially, cicatrized. Conidia solitary, often curved, acropleurogenous, broadly fusoid, elliptical, obovoid or obpyriform, mostly
smooth, sometimes verruculose, echinulate or tuberculate, 3 or more distoseptate, with or without an unequally swollen cell which is
more pigmented than the other cells, septa sometimes accentuated with a dark band in some or all the cells, germinating mainly
from one or both polar cells with the basal germ tube growing semiaxially, hilum in a slightly protruding truncate basal section of the
conidial wall and often visible as two dark lenticular spots in optical section arranged close together with a small obscure narrow
separating canal between them or distinctly protuberant, first conidial septum median or submedian, second septum often delimiting
the basal cell of the mature conidium, third septum then distal. Microconidiation not common, producing conidia 1–2-celled, pale
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brown, globose to subglobose (adapted from Sivanesan 1987).
Culture characteristics: Colonies on PDA white or pale grey when young, orange to brown or different shades of grey (mainly dark
olivaceous grey) when mature, fluffy, cottony, raised or convex with papillate surface, margin lobate, undulate, entire or sometimes
rhizoid.
Optimal media and cultivation conditions: Sterilised Zea mays leaves placed on 1.5 % WA or slide cultures of half-strength PDA
under near-ultraviolet light (12 h light, 12 h dark) to induce sporulation of the asexual morph, while for the sexual morph Sach's agar
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with sterilised rice or wheat straw at 25 °C is used.
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Hosts: Wide host range, occurring as pathogens or saprobes. Mainly found on members of the Poaceae, being pathogens of grass
and staple crops, including rice, maize, wheat and sorghum. This genus also occurs on genera belonging to Actinidiaceae,
Aizoaceae, Caricaceae, Convolvulaceae, Fabaceae, Iridaceae, Lamiaceae, Lythraceae, Oleaceae, Polygonaceae and
Rubiaceae.
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Disease symptoms: Leaf spots, leaf blight, melting out, root rot, foot rot among others.
Notes: Species delimitation in Curvularia based on morphology only is difficult due to the morphological complexity within this
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genus, as also observed in Bipolaris. Furthermore, the differentiation of both genera based on morphology alone is sometimes
complicated (see Bipolaris notes for morphological differences between Bipolaris and Curvularia). Therefore, molecular data are
essential for an accurate identification of species within these genera, ITS, gapdh and tef1 being the loci selected for this purpose
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(Manamgoda et al. 2014, 2015).
Curvularia is a rich genus in host range and geographic distribution compared to Bipolaris. Apart from phytopathogenic
species, this genus comprises species that are pathogens of humans and other animals, causing respiratory tract, cutaneous,
cerebral and corneal infections, mainly in immunocompromised patients (Carter & Baudreaux 2004). Some species can be found
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in association with both humans and plants, such as Cu. hawaiiensis, Cu. lunata and Cu. spicifera (Manamgoda et al. 2015).
References: Sivanesan 1987 (morphology and pathogenicity); Manamgoda et al. 2011 (pathogenicity), Manamgoda et al. 2015
(morphology, pathogenicity and phylogeny).
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Curvularia pisi Y. Marín & Crous, sp. nov. MycoBank MB820814. Fig. 33.
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Etymology: Name refers to the host genus from which it was isolated, Pisum.
Hyphae hyaline to pale brown, branched, septate, thin-walled, 1.5–5 µm. Conidiophores arising in groups, septate, straight or
flexuous, geniculate at upper part, verruculose, tapering towards apex, sometimes branched, cells walls thicker than those of
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vegetative hyphae, mononematous, semi- to macronematous, pale brown to brown, paler towards apex, not swollen at the base,
(35–)50–210 × 2.5–5 µm. Conidiogenous cells verruculose, terminal or intercalary, proliferating sympodially, pale brown to
brown, subcylindrical to swollen, (2.5–)5–15.5 × 3–7.5 µm. Conidia verruculose, curved, rarely straight, middle cells unequally
enlarged, reniform, rarely ellipsoidal, brown, with apical and basal cells paler than middle cells being subhyaline to pale brown,
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(2–)3-distoseptate, 16–35 × 9–15.5 µm; hila slightly protuberant, flat, darkened, slightly thickened, 1.5–4 µm. Chlamydospores,
microconidiation and sexual morph not observed.
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Culture characteristics: Colonies on PDA reaching 90 mm diam within 1 wk, with sparse to moderate aerial mycelium giving a
slightly cottony appearance, lobate; surface apricot to chestnut; reverse umber to chestnut.
Material examined: Canada, Ontario, Renfrew, on Pisum sativum seeds, 15 Feb. 1943, J.W. Groves (holotype CBS H-11405,
culture ex-type CBS 190.48).
Notes: Curvularia pisi is closely related to Cu. muehlenbeckiae and Cu. hominis. Morphologically, these species are similar but
Cu. pisi produces shorter conidiophores. Moreover, Cu. muehlenbeckiae produces smaller conidia than Cu. pisi, and Cu. hominis
is characterised by 3–4-distoseptate conidia while the conidia in the other two species are 3-distoseptate.
Curvularia pisi is known to occur on Pisum sativum, which is also host to two other species of Curvularia, Cu.
inaequalis and Cu. spicifera. Curvularia spicifera produces a sexual morph, while no sexual morph has been observed in the
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other two species. Moreover, Cu. spicifera differs from Cu. pisi in having smooth-walled conidia. Curvularia inaequalis can be
distinguished from Cu. pisi by its longer conidia, which are predominantly 4-distoseptate.
Curvularia soli Y. Marín & Crous, sp. nov. MycoBank MB820816. Fig. 34.
Etymology: Named after its ecology, occurring in soil, “solum”.
Hyphae subhyaline to pale brown, branched, septate, thin-walled, 2.5–5.5 µm. Conidiophores arising in groups, septate, straight
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or flexuous, geniculate at upper part, smooth to verruculose, unbranched, cells walls thicker than those of vegetative hyphae,
mononematous, semi- to macronematous, pale brown to brown, slightly paler towards apex, not swollen at the base, (65–)90–
270(–390) × 2.5–5(–6) µm. Conidiogenous cells smooth-walled to finely verruculose, terminal or intercalary, proliferating
sympodially, pale brown to brown, subcylindrical to swollen, 4–13 × 2.5–5 µm. Conidia verruculose, curved, rarely straight,
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middle cells unequally enlarged, reniform, rarely ellipsoidal, pale brown to brown, apical and basal cells paler than middle cells
being subhyaline to pale brown, 3–4(–5)-distoseptate, (13.5–)18–28 × 7.5–11 µm; hila protuberant, flat, darkened, thickened,
1.3–3.5 µm. Chlamydospores, microconidiation and sexual morph not observed.
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Culture characteristics: Colonies on PDA reaching 75–79 mm diam after 1 wk, velvety to slightly powdery; surface and reverse
grey olivaceous to olivaceous black.
Material examined: Papua New Guinea, Madang, Jais Aben, isolated from soil along coral reef coast, Nov. 1995, collected by A.
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Aptroot, isol. by A. van Iperen (holotype CBS H-23116, culture ex-type CBS 222.96).
Notes: Curvularia soli is closely related to Cu. asianensis, Cu. geniculata and Cu. senegalensis. All three species are
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characterised by conidia that are predominantly 4-distoseptate. Curvularia geniculata is the only species that produces a sexual
morph and has the longest conidia among these taxa (26–48 µm). Curvularia asiatica can be distinguished from Cu. soli by its
much longer conidiophores [(75–)100–700(–708) µm] and shorter conidia [(11–)15–23(–23.5) µm]. Curvularia senegalensis is
characterised by having shorter conidiophores (up to 150 µm) and wider conidia (10–14 µm) than Cu. soli.
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Authors: Y. Marin-Felix, P.W. Crous & Y.P. Tan
Monilinia Honey, Mycologia 20: 153. 1928. Fig. 35.

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Synonym: Monilia Bonord., Handb. Mykol.: 7. 1851.

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Classification: Leotiomycetes, Leotiomycetidae, Helotiales, Sclerotiniaceae.
Type species: Monilinia fructicola (G. Winter) Honey. Holotype: BPI 1109031.
DNA barcode (genus): ITS.

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DNA barcode (species): tef1. Table 10. Fig. 36.
Ascomata apothecial, cup- or funnel-shaped, long stipitate, pale brown, formed solitary or in groups from pseudosclerotia in aborted
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or mummified fruits and debris partially or completely buried in soil; stipe cylindrical, flexuous, pale brown, often darker near the
base; hymenium comprising filiform, septate, unbranched and hyaline paraphyses. Asci unitunicate, inoperculate, with amyloid
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apical apparatus, cylindrical to clavate, flattened or rounded at the apex, thin-walled, 8-spored. Ascospores ellipsoid, often with
tapered ends, 1-celled, hyaline, sometimes covered with a gelatinous sheet. Conidiophores single or aggregated forming
sporodochia, straight or flexuous, hyaline to subhyaline, branched, thin-walled, septate. Macroconidia blastic-acropetal, oval, lemon-
shaped or broadly ellipsoidal, rarely doliiform, hyaline to subhyaline, thin-and smooth-walled, 1-celled, sometimes presenting distinct
axial connections (disjunctors), formed in chains, simple or dichotomously branched; microconidia (spermatia) sometimes present in
old cultures, globose to pyriform, hyaline, smooth- and thin-walled, borne on lageniform, often asymmetric phialides. Arthric conidia
occasionally formed, ovoid to ellipsoid, smooth- and thin-walled.
Culture characteristics: Colonies on PDA white, yellow-grey, brown-grey or olive-grey, often zonate or forming concentric rings, felty
to velvety, flat or concave, margin entire or lobed giving a rosette-like appearance, brown to black stromata can be present in old
cultures.
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Optimal media and cultivation conditions: PDA and WA, incubated under near-ultraviolet light (12 h light, 12 h dark) at 22–25 °C to
determine growth rates, colour and shape of the colony, and induce sporulation of the asexual morph. The sexual morph is not
formed under in vitro culture conditions but can be induced by inoculation on natural substrata and incubated several months
partially buried in sterilised soil.
Hosts: Mostly found as crop pathogens or causing post-harvest losses on stone fruits, most commonly on members of Rosaceae,
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predominantly on Cydonia spp., Malus spp., Prunus spp. and Pyrus spp., but have been reported in at least 11 other genera on this
family, linked to some kind of host specialisation. Other known hosts include members of Actinidiaceae, Berberidaceae, Betulaceae,
Ebernaceae, Ericaceae, Euphorbiaceae, Moraceae, Myricaceae, Myrtaceae, Solanaceae and Vitaceae.
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Disease symptoms: Leaf spots, blossom and twig blight, twig and stem canker, fruit rot.
Notes: Generic identification in vivo or in vitro is easy considering the characteristic monilioid hyphae and sexual-morphs.
Monilinia is morphologically similar and closely related to the genus Sclerotinia, from which it can be differentiated by the
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absence of asexual reproduction and formation of true sclerotia in Sclerotinia. However, species identification in Monilinia is
rather difficult by means of morphology alone. A combination of cultural features, physiology and host range is often necessary,
including macro and micromorphology, growth rates, conidial dimension and characteristics of the germ tube during sporulation.
Other employed techniques include AFLP and RFLP (Gril et al. 2010, Vasić et al. 2016), specific PCR amplification for the three
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major brown rot pathogens M. fructigena, M. fructicola and M. laxa (Cote et al. 2004, Gell et al. 2007) and amplification of
specific introns for rapid identification of M. fructicola (Fulton & Brown 1997). A species delimitation based on molecular
phylogeny is currently lacking and no ex-type material is known to exist for most taxa. However, several reference ITS and tef1
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sequences are available from a set of curated isolates in Q-bank (http://www.q-bank.eu/Fungi/).
A proposal to protect the generic name Monilinia over Monilia has been recently published based on the complex and
often conflicting taxonomic history of the latter name (Johnston et al. 2014). Following this proposal, two new combinations are
proposed below.
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References: Batra 1988, 1991, Honey 1928, 1936, van Leeuwen et al. 2002 (morphology and pathogenicity); van Leeuwen 2000
(morphology, pathogenicity and epidemiology); OEPP/EPPO 2009, Martini & Mari 2014 (morphology, pathogenicity and biology).
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Monilinia mumeicola (Y. Harada et al.) Sandoval-Denis & Crous, comb. nov. MycoBank MB819176.
Basionym: Monilia mumeicola [as 'mumecola'] Y. Harada et al., J. Gen. Plant Pathol. 70: 305. 2004.
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Notes: This species is only known from its asexual morph. It was described as a pathogen on Japanese apricot (Prunus mume)
in Japan (Harada et al. 2004), and later reported causing brown rot of Prunus armeniaca (Yin et al. 2014) and Prunus salicina
(Yin et al. 2015) in China. Our phylogeny (Fig. 36) included sequences of two authentic isolates of Monilinia numeicola and
supported its location in the genus Monilinia, being closely related to the common agents of brown rot M. fructicola, M. fructigena
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and M. laxa.
Monilinia yunnanensis (M.J. Hu & C.X. Luo) Sandoval-Denis & Crous, comb. nov. MycoBank MB819177.
Basionym: Monilia yunnanensis M.J. Hu & C.X. Luo, PloS ONE 6: 11. 2011.
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Notes: This taxon was described as a pathogen of peach (Prunus persica) in China and has subsequently been isolated as the
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most prevalent pathogen of apple and pear in the southern, northern and western regions of that country (Zhu et al. 2016). Its
phylogenetic placement in Monilinia was supported in our phylogeny (Fig. 36) based on sequences from two authentic isolates,
showing that it forms a clade basal to the main cluster grouping the most economically relevant species of the genus.
Authors: M. Sandoval-Denis & P.W. Crous
Neofabraea H.S. Jacks., Rep. Oregon Exp. Sta. 1911–1912: 187. 1913. Fig. 37.
Classification: Leotiomycetes, Leotiomycetidae, Helotiales, Dermateaceae.
Type species: Neofabraea malicorticis H.S. Jacks. Neotype and ex-neotype culture: CBS H-22219, CBS 122030 = OSC 100036.
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DNA barcodes (genus): LSU.
DNA barcodes (species): ITS, tub2, rpb2. Table 11. Fig. 38.
Ascomata apothecial, erumpent from bark, sessile to short-stalked, solitary or in clusters on a basal stroma; disc often not well-
delimited, circular, elliptical, or irregular and merged, greyish, flesh-coloured to pale reddish or brownish, drying darker, 0.5–2.0 mm
diam. Paraphyses numerous, filiform, septate, obtuse, simple or branched, hyaline, smooth-walled, apical cells mostly slightly
swollen. Asci inoperculate, cylindrical-clavate, apex rounded or truncate-rounded, attenuated into a stalk of variable length, crozier
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present, 8-spored; apical apparatus with a well-developed apical thickening, Lugol's + or -, blue in herbarium material, Melzer’s + or -
. Ascospores inequilateral, elongated ellipsoid, ends rounded, straight or curved, aseptate, thin-walled, smooth, hyaline, with
granular contents or small oil droplets; later septate, sometimes germinating or forming conidia from minute openings or phialides.
Conidiomata erumpent from bark, stromatic, acervular, plane to pulvinate. Conidiophores simple or branched, smooth, hyaline,
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acrogenous or acropleurogenous. Conidiogenous cells discrete or integrated, determinate, phialidic, cylindrical to narrowly
ampulliform, giving rise to macro- and/or microconidia. Macroconidia cylindrical-fusiform, allantoid to ellipsoid, straight or curved,
rounded or somewhat pointed at apex, rounded or attenuated and with an indistinct, barely or non-protruding scar at base, smooth,
aseptate, hyaline, and thin-walled when liberated, mostly filled with numerous oil droplets; later becoming septate and brown.
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Microconidia present or absent, cylindrical, rounded at apex, narrowly truncate at base, aseptate, hyaline, thin- and smooth-walled,
with minute granular contents (adapted from Chen et al. 2016).
Culture characteristics: Colonies on OA white, cottony. Colonies on PDA orange or red, slimy.
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Optimal media and cultivation conditions: OA at 25 °C under near-ultraviolet light (12 h light, 12 h dark); OA supplemented with
sterile nettle stems (Anthriscus sylvestris) or direct inoculation into apple fruit (Malus domestica) can be used to induce sporulation.
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Hosts: Pathogens or harmless saprobes of apples and pears, but also of several other hosts such as species of Prunus and
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Populus.
Disease symptoms: Anthracnose canker, perennial canker and bull's-eye rot.

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Notes: Neofabraea was introduced by Jackson (1913) to accommodate the sexual morph Gloeosporium malicorticis.
Subsequently, Nannfeldt (1932) synonymised this genus with Pezicula. However, Verkley (1999) revalidated it and observed that
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species of Neofabraea are more explicitly pathogenic than those of Pezicula. Neofabraea further differs from Pezicula in that
Neofabraea produces ascomata with excipular tissues less differentiated and macroconidia more strongly curved with the basal
scar less distinct than in Pezicula. Moreover, Pezicula comprises species that have two types of conidiogenesis: conidiogenous
cells are determinate and phialidic, or indeterminate and proliferating percurrently, while Neofabraea spp. only produces phialidic
conidiogenous cells (Chen et al. 2016). Recently, Chen et al. (2016) carried out a revision of the genus by performing a
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phylogenetic study based on LSU, ITS, tub2 and rpb2 sequences of Neofabraea, Pezicula and related genera. Consequently,
the genus Phlyctema was re-established to accommodate Neofabraea alba, which is the main pathogen causing bull's eye rot in
continental Europe. Moreover, the new genera Parafabraea and Pseudofabraea were introduced in order to accommodate
Neofabraea eucalypti and Neofabraea citricarpa, respectively (Chen et al. 2016).
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References: Verkley 1999 (morphology and pathogenicity), Wang et al. 2015 (morphology and key of Neofabraea spp.), Chen et al.
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2016 (phylogeny).
Verkleyomyces Y. Marín & Crous, gen. nov. MycoBank MB820818.
Etymology: Named after Gerard J.M. Verkley, in recognition for his contributions to the understanding of Neofabraea and related
genera.
Mycelium hyaline to pale brown, branched, septate. Ascomata apothecial, partly immersed, erumpent, sessile, solitary,
sometimes gregarious; medullary excipulum weakly developed, composed of hyaline textura prismatica; ectal excipulum
composed of brown to olivaceous brown textura prismatica at the base, and pale brown textura intricata towards the margin;
subhymenium hyaline, composed of interwoven hyphae. Paraphyses cylindrical, slender, septate, apex rounded, hyaline,
flexuous, numerous. Asci unitunicate, clavate to cylindrical-clavate, base truncate, short pedicellate, with an apical apparatus
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stained blue or purplish blue in Melzer's reagent, 8-spored, ascospores discharging through apical pore. Ascospores fusoid to
ellipsoid, hyaline, ends rounded or somewhat pointed, straight or slightly curved, thin-walled, guttulate or eguttulate, initially
aseptate, or later becoming 1-septate. Conidiomata acervular or cupulate, semi-immersed, dark, separate, formed of olivaceous
brown textura intricata, dehiscence by irregular fissures, sometimes by a central ostiole. Conidiophores simple, hyaline, smooth,
thin-walled, septate at the base, unbranched, discrete, or rarely integrated beneath the aged conidiogenous cell. Conidiogenous
cells enteroblastic, phialidic, cylindrical, hyaline, smooth, thin-walled, sometimes with proliferation, periclinal thickening present.
Conidia cylindrical, straight, apex obtuse, base abruptly tapered to a distinct scar, hyaline, smooth, thin-walled, aseptate,
eguttulate to biguttulate.
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Culture characteristics: Colonies on PDA glaucous to sky grey, with irregular white margin; reverse olivaceous black.
Type species: Verkleyomyces illicii (X. Sun et al.) Y. Marín & Crous. Holotype and ex-type culture: HMAS244704, ASH-3-6-2-5b.
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Notes: Verkleyomyces is introduced to accommodate Neofabraea illicii, the most recently published species of Neofabraea
(Wang et al. 2015). In the phylogenetic analysis based on ITS sequences (Fig. 38), this species was located in a clade separate
from the rest of the species belonging to Neofabraea. Verkleyomyces is mainly differentiated by its endophytic habit.
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Morphologically both genera are comparable, but Verkleyomyces produces 1-septate ascospores and aseptate conidia, while
Neofabraea is characterised by aseptate ascospores and predominately septate conidia. Parafabraea, which is more closely
related, also produces aseptate conidia, but this can be differentiated from Verkleyomyces by the production of aseptate
ascospores. Other similar genera are Pezicula and Dermea, but these can easily be distinguished by the production of
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ascospores that are initially hyaline, and then become coloured or contain coloured oil droplets.
Verkleyomyces illicii (X. Sun et al.) Y. Marín & Crous, comb. nov. MycoBank MB820819.
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Basionym: Neofabraea illicii X. Sun et al., Mycoscience 56: 334. 2015.
Description and illustration: Wang et al. (2015).

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Note: Verkleyomyces illicii is an endophytic fungus isolated from Illicium verum, cultivated in a plantation in southern China.
Authors: Y. Marin-Felix & P.W. Crous

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Neofusicoccum Crous et al., Stud. Mycol. 55: 247. 2006. Fig. 39.
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Classification: Dothideomycetes, Botryosphaeriales, Botryosphaeriaceae.
Type species: Neofusicoccum parvum (Pennycook & Samuels) Crous et al. Holotype and ex-type culture: PDD 45438
(Herbarium of Plant Diseases Division), ATCC 58191 = CBS 138823 = PDDCC 8003 = ICMP 8003 = CMW 9081.
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DNA barcodes (species): ITS, tef1, tub2, rpb2. Table 12. Fig. 40.
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Ascomata forming botryose clusters, each comprising many ascomata, erumpent through the bark, globose, with a short, conical
papilla, dark brown to black, smooth, thick-walled; ascomatal wall composed of dark brown thick-walled cells of textura angularis,
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lined with thin-walled hyaline cells of textura angularis. Asci clavate, 8-spored, bitunicate. Ascospores broadly ellipsoidal to
fusoid, hyaline, smooth, aseptate, occasionally becoming 1-septate. Conidiomata globose and non-papillate, entire locule lined
with conidiogenous cells. Conidiogenous cells holoblastic, hyaline, subcylindrical, proliferating percurrently to form 1–2
annellations, or proliferating at the same level to form periclinal thickenings. Conidia ellipsoidal with apex round and base flat,
unicellular, hyaline, old conidia becoming 1–2-septate hyaline, or light brown with the middle cell darker than the terminal cells.
Dichomera synasexual morph: Conidia subglobose to obpyriform, brown, apex obtuse, base truncate, 1–3 transverse septa, 1–2
longitudinal septa, and 1–2 oblique septa.
Culture characteristics: Colonies initially white to buff turning olivaceous grey becoming black with age, moderately dense,
appressed mycelial mat with irregular very dense aerial aggregations, some conidioma covered by mycelium, immersed-
erumpent, conidia and spermatia present. Reverse white to olivaceous black. Reaching 90 mm diam on half strength MEA in 3–4
d.
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Optimal media and cultivation conditions: Half strength MEA at 25–30 ºC.
Hosts: Plurivorous, mainly pathogenic on Anacardiaceae, Cupressaceae, Ebenaceae, Fagaceae, Juglandaceae, Lauraceae,
Moraceae, Myrtaceae, Oleaceae, Pinaceae, Proteaceae, Rosaceae, Rutaceae, Vitaceae, families belonging to Lamiales and
various other host plants.
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Disease symptoms: Fruit rot, wood canker, leaf spots.
Notes: Neofusicoccum was introduced by Crous et al. (2006b) to accommodate species morphologically similar to, but
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phylogenetically divergent from Botryosphaeria (= Fusicoccum). To separate Neofusicoccum from Botryosphaeria based solely
on morphology can be difficult due to similar morphological characteristics. Therefore, molecular data are required to achieve
accurate identification. One morphological difference between both genera is the presence of a Dichomera synasexual morph in
Neofusicoccum. However, this synasexual morph is not produced by all Neofusicoccum species, nor even all isolates of any
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given species. Moreover, dichomera-like conidia were reported in some isolates of Bot. dothidea (Barber et al. 2005, Phillips et
al. 2005). Other morphological differences are the absence of paraphyses in the conidiomata of Neofusicoccum spp., while these
have been seen in most of the currently accepted Botryosphaeria species, and the conidial L/W ratios being less than 4 in
Neofusicoccum. Furthermore, the conidia of Neofusicoccum are more ellipsoidal than the fusiform ones of Fusicoccum s. str.
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Species in Neofusicoccum are morphologically similar and hard to differentiate from one another. Neofusicoccum
species are currently defined on the basis of conidial dimensions and pigmentation, pigment production in culture media and ITS
sequence data. Taxa in some of the species complexes are defined exclusively on DNA sequence data (ITS, often together with
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tef1, tub2 and rpb2. In some cases, multigene sequence data are essential for species identification.
References: Crous et al. 2006b, Berraf-Tebbal et al. 2014, Yang et al. 2017 (morphology and phylogeny); Pavlic et al. 2009a
(phylogeny); Pavlic et al. 2009b (morphology, pathogenicity and phylogeny), Phillips et al. 2013 (morphology, phylogeny and
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dichotomous key).
Neofusicoccum italicum Dissanayake & K.D. Hyde, sp. nov. MycoBank MB820799, Facesoffungi number FOF02963. Fig. 41.
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Etymology: Based on the country where the type specimen was collected.
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Sexual morph not observed. Conidiomata 0.5–1.5 × 1.5–2 mm, black, scattered, uniloculate, globose; conidiomatal wall
composed of dark brown textura angularis, becoming hyaline towards conidiogenous region. Conidiophores reduced to
conidiogenous cells. Conidiogenous cells 9–16.5 × 2.5–3.5 µm, lining inner wall of pycnidium, holoblastic, cylindrical to
subobpyriform, hyaline, discrete, determinate, occasionally indeterminate and proliferating percurrently with indistinct
annellations. Conidia 13–18.5 × 3.5–6 µm, obovoid, fusiform, base truncate, apex obtuse to subobtuse, hyaline, guttulate, non-
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septate, older conidia may become brownish and septate before germination. Dichomera synasexual morph not reported.
Culture characteristics: Colonies white with abundant aerial mycelium reaching 90 mm diam within 1 wk on PDA at 28 ºC. Aerial
mycelium becoming smoke-grey to olivaceous grey at the surface and dull green to brown-vinaceous at the reverse after 2 wk in
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the dark at 28 ºC.

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Materials examined: Italy, on a dead branch of Vitis vinifera, 22 Nov. 2014, E. Camporesi (holotype MFLU 16-2872, culture ex-
type MFLUCC 15-0900). New Zealand, on Malus × domestica, unknown date, H.J. Boesewinkel, CBS 719.85.
Notes: According to the phylogenetic analysis Neofusicoccum italicum clustered close to Nm. algeriense, which has larger
conidia (17.6 × 5.6 µm) than those of Nm. italicum (15.8 × 5.2 µm). Both species are pathogens of Vitis vinifera, but Nm.
algeriense is restricted to this host while Nm. italicum was also isolated from Malus × domestica. Other species of
Neofusicoccum associated with Vitis vinifera are Nm. australe, Nm. luteum, Nm. mediterraneum, Nm. parvum, Nm.
stellenboschiana, Nm. viticlavatum and Nm. vitifusiforme (Van Niekerk et al. 2004a, Phillips et al. 2013, Yang et al. 2017).
Neofusicoccum and other related genera belonging to Botryosphaeriaceae are widely distributed pathogens of grapevines that
cause bud mortality, dieback, brown streaking inside the wood, internal necrotic lesions and in some cases bunch rot (Phillips et
al. 2013).
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Neofusicoccum pistaciicola Crous, sp. nov. MycoBank MB820820. Fig. 42.
Etymology: Named after the host genus from which it was collected, Pistacia.
Sexual morph not observed. Conidiomata stromatic, solitary, globose, up to 300 µm diam, conidioma wall 6–8 cell layers thick, of
brown textura angularis, becoming hyaline toward inner region. Conidiophores 0–2-septate, branched, hyaline, smooth,
subcylindrical, 15–25 × 4–5 µm. Conidiogenous cells holoblastic, hyaline, smooth, subcylindrical, proliferating percurrently, 12–
17 × 2.5–3.5 µm. Conidia hyaline, smooth, thin-walled, granular, aseptate, subcylindrical to fusoid-ellipsoid, apex subobtuse,
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base truncate, 1.5–2.5 µm, straight to irregularly curved, (15–)18–24(–27) × (4–)4.5(–5) µm. Spermatia or Dichomera
synasexual morph not observed.
Culture characteristics: Colonies on MEA reaching 90 mm diam within 1 wk, with fluffy moderate aerial mycelium; surface pale
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mouse-grey, reverse mouse-grey to dark mouse-grey.
Material examined: USA, California, Glenn County, on Pistacia vera, 12 Apr. 2002, T.J. Michailides (holotype CBS H-23108,
culture ex-type CBS 113089).
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Notes: Neofusicoccum pistaciicola is morphologically similar to Nm. hellenicum, which Chen et al. (2015b) recently described
from Pistacia vera in the USA. However, compared with N. hellenicum, Nm. pistaciicola possesses smaller conidiomata and
narrower conidia. The same features are used to distinguish it from Nm. pistaciarum, which is the closest phylogenetic species,
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and also a pathogen of Pistacia vera. Other species of Neofusicoccum associated to this host are Nm. australe, Nm.
mediterraneum, Nm. nonquaesitum, Nm. parvum and Nm. pistaciae (Inderbitzin et al. 2010, Phillips et al. 2013, Yang et al.
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2017).
Neofusicoccum pruni Crous, sp. nov. MycoBank MB820821. Fig. 43.
Etymology: Named after the host genus from which it was collected, Prunus.
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Sexual morph not observed. Conidiomata stromatic, solitary, globose to obpyriform, up to 300 µm diam, conidioma wall 6–10 cell
layers thick, of brown textura angularis, becoming hyaline toward inner region. Conidiophores 0–1-septate, hyaline,
subcylindrical, 10–20 × 2.5–4 µm. Conidiogenous cells holoblastic, hyaline, subcylindrical, 10–15 × 2.5–3.5 µm, proliferating
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percurrently with numerous proliferations, or proliferating at the same level (phialidic) with minute periclinal thickening. Conidia
hyaline, granular, aseptata, fusoid to ellipsoid, widest in the middle or upper third with an obtuse apex and flattened, subtruncate
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base, (18–)20–23(–25) × (6.5–)7–7.5(–8.5) µm. Spermatia or Dichomera synasexual morph not observed.
Culture characteristics: Colonies on MEA reaching 90 mm diam within 1 wk, with fluffy moderate aerial mycelium; surface and
reverse greenish black.
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Material examined: South Africa, Limpopo, Mookgopong, from branches of Prunus salicina, Aug. 2004, U. Damm (holotype
CBS H-23109, culture ex-type CBS 121112 = CPC 5912).
Notes: Neofusicoccum vitifusiforme was initially described from Vitis vinifera in South Africa by van Niekerk et al. (2004a). Damm
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et al. (2007) was the first to report this fungus as a pathogen from Prunus salicina in South Africa, although their phylogenetic
tree showed this isolate (CBS 121112) to cluster basal to the grapevine strains based on ITS and tef1 sequence data. A recent
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study by Yang et al. (2017), which incorporated all Neofusicoccum isolates available in the CBS culture collection, as well as
additional genes (rpb2 and tub2) showed the Prunus isolate to represent a distinct species. This isolate (formerly sterile) has
subsequently been induced to sporulate, and is therefore named in the present study.
Authors: Y. Marin-Felix, E. Camporesi, A. Dissanayake, K.D. Hyde & P.W. Crous
Pilidium Kunze, Mykol. Hefte 2: 92. 1823. Fig. 44.

Synonyms: Sclerotiopsis Speg., Anal. Soc. Cient. Argent. 13: 14 1882.
Hainesia Ellis & Sacc., in Saccardo, Syll. fung. (Abellini) 3: 698. 1884.
Discohainesia Nannf., Nova Acta Regiae Soc. Sci. Upsal., Ser. 4 8: 88. 1932.
Classification: Leotiomycetes, Leotiomycetidae, Helotiales, Chaetomellaceae.

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Type species: Pilidium acerinum (Alb. & Schwein.) Kunze. Iconotype in Kunze & Schmidt (1823), table 2, fig. 5. Epitype and ex-
epitype culture: BPI 843555, CBS 736.68.
DNA barcode (genus): LSU.
DNA barcode (species): ITS. Table 13. Fig. 45.
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Ascomata apothecial, flat to funnel-shaped, short stipitate, white, pale brown to amber in the basal portion, wall
pseudoparenchymatous (plectenchymatous). Paraphyses narrow, simple or branched, aseptate. Asci unitunicate, cylindrical,
clavate, rounded or truncate at the apex, deliquescent. Ascospores ellipsoidal, somewhat enlarged at one side, straight to slightly
curved, aseptate, smooth-walled. Conidiomata pycnidial or sporodochial; pycnidia globose, subglobose, obpyriform or oblong,
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sessile, pale brown when young, dark brown to black at maturity, superficial, solitary or gregarious, uniloculate, smooth;
conidiomatal wall with two regions: outer region dark brown, inner region hyaline; opening by a stellate slit, rupturing irregularly,
or lacking. Conidiophores hyaline, smooth, branched, cylindrical or filiform. Conidiogenous cells enteroblastic, phialidic,
acropleurogenous, hyaline, smooth. Conidia mostly non-septate, hyaline, smooth, fusiform to falcate or cymbiform, with ends
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slightly pointed, straight to curved. Sporodochia globose becoming cupulate, discoid, with irregularly wavy margin, slimy, pale
luteous, superficial, solitary, stalk pale brown near base, becoming dark brown at apex. Conidiophores hyaline, smooth, branched,
cylindrical or filiform. Conidiogenous cells enteroblastic, phialidic, acropleurogenous, determinate, integrated, filiform or
subcylindrical, hyaline, smooth, with minute collarette. Conidia aseptate, hyaline, smooth, fusiform to falcate or cymbiform to
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allantoid, with acute ends, straight to curved.
Culture characteristics: Colonies on PDA surface and reverse white to cinnamon, buff, honey, sepia or isabelline, slimy with aerial
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mycelium absent or sparse, flat, granulose due to production of fruiting bodies; margin smooth and lobate.
Optimal media and cultivation conditions: PDA, OA and MEA incubated at 25 °C for 1 wk at 25 °C under alternating fluorescent (12
h) and near ultraviolet (12 h) light are suitable to determine cultural characteristics and induce sporulation of the asexual morph. The
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sexual morph is not formed in vitro, and is relatively uncommon and inconspicuous.
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Hosts: Species of this genus are mainly found on different hosts of Anacardiaceae, Hippocastanaceae, Myrtaceae and Rosaceae,
and also in several other families such as Betulaceae, Ebenaceae, Fabaceae, Geraniaceae, Oleaceae, Paeoniaceae, Pinaceae,
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Polygonaceae, Salicaceae, Sapindaceae, Saxifragaceae and Vitaceae.
Disease symptoms: Leaf spots, root lesions and tan-brown rot of fruits.
Notes: Species of Pilidium are commonly found as plant-associated fungi or isolated from soil (Sutton 1980), and they are known
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to produce two kinds of conidiomata. Pilidium lythri (formerly known as Pi. concavum) and Pi. pseudoconcavum form
sporodochia in culture. Although, the former species also produces the pycnidial morph, both species can be distinguished
based on conidial shape (fusiform vs. cymbiform), sporodochial size (300–1000 µm diam vs. up to 300 µm diam) and DNA
sequences (Crous et al. 2013b). Both Pi. acerinum and Pi. eucalyptorum produce brown pycnidia in vitro and they are closely
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related (Fig. 45). However, they differ in pycnidial size (200–1000 µm diam vs. up to 300 µm diam), conidiophore shape
(cylindrical vs. filiform) and in the production of guttulate conidia, which are absent in Pi. acerinum and present in Pi.
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eucalyptorum (Rossman et al. 2004, Crous et al. 2015e).

Discohainesia oenotherae and Hainesia lythri were considered the sexual and synasexual morphs of Pi. lythri
(Rossman et al. 2004). However, after the one fungus = one name initiative the generic name Pilidium was proposed for
conservation over Hainesia and Discohainesia (Johnston et al. 2014).
References: Sutton 1980, Shear & Dodge 1921, Palm 1991 (morphology); Sutton & Gibson 1977 (morphology and
pathogenicity); Rossman et al. 2004 (morphology, pathogenicity and ecology).
Pilidium septatum Giraldo & Crous, sp. nov. MycoBank MB820871. Fig. 46
Etymology: Refers to the presence of septate conidia.

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Conidiomata pycnidial, superficial, solitary or gregarious, brown to black, smooth, uniloculate, subglobose to obpyriform, 97–260
× 127–230 µm; outer conidiomatal wall 11–27 µm thick, with textura angularis, formed by thick-walled, brown cells; inner
conidiomatal wall 13–20 µm thick, with textura angularis or globulosa, formed by 4–5 layers of thick-walled, hyaline cells.
Conidiophores branched, cylindrical, septate, hyaline, smooth, up to 24 µm long, 1.5–2 µm diam. Conidiogenous cells
acropleurogenous, monophialidic, cylindrical, slightly curved, smooth, hyaline, delineating the inner part from the pycnidium, 7–
11 × 1.5–2 µm. Conidia 1-septate, hyaline, falcate with ends slightly pointed, thin- and smooth-walled, (8.1–)9–11(–12.5) × (1–
)1.5(–2) µm.
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Culture characteristics: Colonies on OA and PDA reaching 30–40 mm in 2 wk. Colonies flat, granulose due to production of
pycnidia, with scarce aerial mycelium, surface honey to isabelline.
Materials examined: Thailand, Nakhon Nayok province, Mueang Nakhon Nayok district, Wang Takhrai waterfall, N14.330023°
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E101.307168°, 64 m above sea level, from soil, 22 Jul. 2015, A. Giraldo (holotype metabolically inactive, culture ex-type BCC
79016); Nan province, Bo Kluea district, N19.14833333° E101.1566667, from soil, 8 Aug. 2015, A. Giraldo (BCC 79037).
Notes: Presently the genus includes only species with aseptate conidia, and thus Pi. septatum, with septate conidia, expands the
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generic concept of Pilidium. In addition to the phylogenetic relationship revealed through the analysis of LSU and ITS regions
(Fig. 45), morphological characteristics such as the morphology of the pycnidia, the production of acropleurogenous
conidiogenous cells and conidial shape, support the inclusion of this species within the genus.
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Authors: A. Giraldo, J. Luangsa-ard & P.W. Crous
Pleiochaeta (Sacc.) S. Hughes, Mycol. Pap. 36: 39. 1951. Figs 47, 48.
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Synonym: Ceratophorum subgen. Pleiochaeta Sacc., Syll. fung. (Abellini) 11: 622. 1895.
Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Dothidotthiaceae.

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Type species: Pleiochaeta setosa (Kirchner) S. Hughes. Epitype and ex-epitype culture designated here: CBS H-23058, CBS
496.63 = MUCL 8091).

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DNA barcode (species): ITS. Table 14. Figs 49, 50.

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Sexual morph unknown. Conidiophores macronematous, mononematous or grouped in fascicles, simple, erect, straight to flexuous,
or geniculate, hyaline to pale olivaceous, smooth. Conidiogenous cells mono- and polyblastic, integrated, terminal and intercalary,
cylindrical. Conidia solitary, dry, subcylindrical to fusoid, mostly curved, narrowed to obtuse at the apex, truncate at the base, pale to
dark brown, smooth, multiseptate; apical cell bears several long, hyaline, subulate appendages which are sometimes branched.
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Chlamydospores present or absent, brown to dark brown in chains or in groups.
Culture characteristics: Colonies on PDA grey to olivaceous black with aerial mycelium white, cottony, margin fimbriate, effuse;
reverse black.
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Optimal media and cultivation conditions: MEA, OA, PDA or SNA with sterilised twigs, incubated at 25 °C. Not all strains sporulate
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well in culture.
Hosts: Mainly pathogens of legumes, with one species reported from carrots.
Disease symptoms: Brown leaf spots, lesions are circular and zonate. It also can attack stems, pods and roots, and destroy whole
plants.
Notes: Pleiochaeta was established by Hughes (1951) to accommodate two species previously included in Ceratophorum,
named Plei. setosa and Plei. albizziae. Currently this genus comprises six species, including pathogens and saprobes.
Pleiochaeta setosa, the generic type, is the most important species from a phytopathogenic point of view, causing serious
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damage in Lupinus spp. and other legumes members of Fabaceae. Sequences available to date for the genus are scant. After
the analysis of LSU and ITS sequences of the isolates studied with members of Pleosporales (Dothideomycetes), we support the
phylogenetic position of Plei. setosa and Plei. ghindensis in the Dothidotthiaceae. Furthermore, our results allow us to describe a
new species from South Africa, Plei. carotae, causing a disease on carrot leaves. Cultures of Plei. albiziae, Plei. amazonensis,
Plei. cassiae and Plei. stellaris were not available for this study, and their phylogenetic position remains unknown. Further
studies with additional molecular data of isolates from different origins and substrates, as well as pathogenicity tests, need to be
conducted.
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References: Hughes 1951 (taxonomy and morphology); Pirozynski 1974 (morphology and distribution); Bateman 1997
(pathogenicity); Yang & Sweetingham 2002 (morphology and pathogenicity).
Pleiochaeta carotae Hern.-Restr., van der Linde & Crous, sp. nov. MycoBank MB820795. Fig. 47.
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Etymology: Named after the host genus from which it was isolated, Daucus carota.
Mycelium partly immersed, partly superficial, composed of branched, septate, hyaline to dark brown, smooth, 3–9 µm wide,
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hyphae. Conidiophores macronematous, mononematous, usually unbranched, flexuous, frequently geniculate, hyaline or pale
olivaceous, smooth. Conidiogenous cells mono- and polyblastic, integrated, terminal and intercalary, sympodial, cylindrical to
geniculate. Conidia solitary, dry, subcylindrical ellipsoid to fusoid, mostly curved, narrowed at apex, truncate at the base, at first
colourless becoming orange-brown to olivaceous brown, smooth, 92–137 × 16–22 µm, 6–10-septate, usually constricted at the
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septa; basal cell conical, truncate, subhyaline to pale brown, 8–11 µm wide; apical cell obtuse, arising 2–3 hyaline appendages, with
one appendage arising apically which are usually branched 2–4 times, and another two laterally on the sides which are usually
branched 1–2(–3) times, appendages 70–114 µm long, 4.5–7 µm wide at the point of origin and pointed at their apices.
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Chlamydospores not observed.
Culture characteristics: Colonies reaching 40–55 mm diam after 1 wk at 25 ºC on OA, PDA and MEA olivaceous black, cottony,
with white aerial mycelium in the centre, exudate hyaline, margin fimbriate, effuse, colourless; reverse black.
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Material examined: South Africa, Gauteng, Pretoria, on carrot leaf, Mar. 2015, M. Truter (holotype CBS H-23057, culture ex-
type CPC 27452 = CBS xxxx).
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Notes: This is the first species of Pleiochaeta described from carrots, a non-legume host plant. Conidia of this species resemble
those of Plei. ghindensis, having branched apical appendages, usually more than twice branched. In Plei. ghindensis
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conidiogenous cells are monoblastic, terminal and cylindrical with percurrent proliferations. However, in Plei. carotae,
conidiogenous cells are mono- and polyblastic, terminal and intercalary and geniculate with sympodial proliferations.
Furthermore, conidia in Plei. carotae are larger (92–137 µm vs. 85–115 µm in Plei. ghindensis) and with a larger number of
septa (6–10 vs. 6–7 in Plei. ghindensis). Finally, the basal conidial cells are usually paler than the other cells (in Plei. ghindensis
conidia are concolorous).
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Pleiochaeta setosa (Kirchn.) S. Hughes. Mycol. Pap. 36: 34. 1951. Figs 48, 51.
Basionym: Ceratophorum setosum Kirchn. Z. Pflanzenkrankh. Pflanzenschutz 2: 324. 1892.
Synonyms: Pestalotia lupini Sorauer, Z. Pflanzenkrankh. Pflanzenschutz 8: 269. 1898.
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Mastigosporium lupini (Sorauer) Cavara, Riv. Patol. Veg. 14: 13. 1924.
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Mycelium partly immersed, partly superficial, composed of branched, septate, hyaline to brown, smooth, 4–7.5 µm wide, hyphae.
Conidiophores macronematous, mononematous, usually unbranched, flexuous, frequently geniculate, hyaline or pale olivaceous,
smooth, 34–138 × 5–11 µm. Conidiogenous cells mono-, usually polyblastic, integrated, terminal and intercalary, sympodial,
cylindrical, geniculate, hyaline to pale olivaceous, 25–68 × 8–11.5 µm. Conidia solitary, dry, subcylindrical to fusoid, mostly curved,
narrowed at the apex, truncate at the base, colourless or with the cell at each end hyaline or subhyaline and intermediate cells straw-
coloured to golden brown, smooth, 68–88.5 × 11–25 µm, 8.5–11 µm wide at the base, 4–7-septate; apical cell bears 3–4 hyaline,
subulate appendages, 89–150 × 2.5–5.5 µm, apical appendage at first simple later becoming branched, lateral appendages simple.
Chlamydospores pale brown to dark brown, terminal and intercalary, in chains or in groups (observed in CBS 142.51 and 502.80,
but not in the epitype).
Culture characteristics: Colonies reaching 25–50 mm diam after 1 wk at 25 ºC on OA, PDA and MEA, cottony to glabrous,
smoke-grey to olivaceous black, with aerial mycelium in the centre white, margin effuse, fimbriate; reverse black. On OA
ACCEPTED MANUSCRIPT
sometimes with hyaline exudate and apricot diffusible pigment.
Material examined: Lectotype designated here: figs 1–6 in Kirchner O. 1892. Über das Absterben junger Cytisus-Pflanzen. Z.
Pflanzenkrankh. Pflanzenschutz 2: 324–327, MBT376013. Austria, Wallersberg, near Völkermarkt, on living stem and leaf of
Genista sagittale, Aug. 1980, W. Gams, CBS 502.80. Germany, Berlin, on leaf of Cytisus racemosus, unknown date, R.
Schneider (epitype designated here CBS H-23058, MBT376012, culture ex-epitype = CBS 496.63 = MUCL 8091). The
Netherlands, Boskoop, on spot on stem of Cytisus sp., unknown date, I. de Boer, CBS 142.51. Unknown country, on leaf of
Laburnum sp., unknown date, dep. C.M. Doyer, CBS 118.25.
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Notes: Pleiochaeta setosa was introduced by Kirchner (1892) as Ceratophorum setosum for a fungus that infects Cytisus in
Germany and later was transferred to Pleiochaeta by Hughes (1951). Since type material for Plei. setosa is inexistent, the
illustrations included in the protologue reproduced here (Fig. 51) serve as lectotype. In addition, to fix the use of the name the
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strain CBS 496.63 is designated here as ex-epitype. This isolate was collected, from the same locality and host genus where it
was found the first time (Kirchner 1892) and fits well with the description of the protologue. This species has a worldwide
distribution and it is frequently reported as pathogen of Lupinus (Hughes 1951, Pirozynski 1974). Nevertheless, Crotalaria,
Genista, Laburnum and Ornithopus can also be hosts of this species (Pirozynski 1974, Yang & Sweetingham 2002).
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Unfortunately, host specificity studies are not available for this species, even though Yang & Sweetingham (2002) reported
morphological and pathogenicity differences among isolates from Lupinus spp. and Ornithopus spp.
Authors: M. Hernández-Restrepo, E.J. van der Linde & P.W. Crous
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Plenodomus Preuss, Linnaea 24: 145. 1851. Fig. 52.
Synonyms: Phoma sect. Plenodomus (Preuss) Boerema, Kesteren & Loer., Trans. Brit. Mycol. Soc. 77: 61. 1981.
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Diploplenodomus Diedicke, Ann. Mycol. 10: 140. 1912.
Plectophomella Moesz, Magyar Bot. Lapok 21: 13. 1922.
Apocytospora Höhn., Mitt. Bot. Lab. TH Wien 1: 43. 1924.
Deuterophoma Petri, Boll. R. Staz. Patalog. Veget. Roma 9: 396. 1929.
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For Additional synonyms of the asexual morph and sexual morph genera listed below see Boerema et al. (1994) and
Khashnobish et al. (1995), respectively.
Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Leptosphaeriaceae.

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Type species: Plenodomus lingam (Tode: Fr.) Höhn. Representative strains: CBS 532.66 and 475.81.
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DNA barcodes (species): tub2, rpb2. Table 15. Fig. 53.

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Ascomata solitary, scattered or in small groups, erumpent to superficial, subglobose, broadly or narrowly conical, small- to
medium sized, dark brown to black, smooth, ostiolate; ostiole apex with a conical, well developed papilla; ascomatal wall
composed of two to several layers of scleroplectenchymatous cells. Hamathecium comprising long, septate, pseudoparaphyses.
Asci 8-spored, bitunicate, fissitunicate, cylindrical, rounded at the apex, with an ocular chamber, short pedicel. Ascospores
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cylindrical to ellipsoidal, yellowish brown, septate, not or slightly constricted at septa, guttulate and lacking a mucilaginous
sheath, cell above central septum slightly wider. Conidiomata. Type 1: solitary, scattered or in small groups, erumpent to
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superficial, subglobose or flask shaped with a broad base, mostly black, ostiolate; ostiole with a long neck and well developed
poroid papilla in the apex. Type 2: solitary, scattered or in small groups, erumpent to superficial, mostly subglobose, ostiolate;
ostiole slightly papillate with a narrow pore or opening via a rupture. Conidiomatal wall composed of several layers with thick-
walled cells of textura angularis, surface heavily pigmented. Conidiophores reduced to conidiogenous cells. Conidiogenous cells
phialidic, hyaline, smooth, ampulliform. Conidia hyaline, aseptate, ellipsoidal to subcylindrical (adapted from Ariyawansa et al.
2015b).
Culture characteristics: Colonies on OA yellow/green to olivaceous grey, dull green, or translucent, aerial mycelium tenuous, margin
irregular and whitish, compact, floccose.
Optimal media and cultivation conditions: OA or PNA near-ultraviolet light (12 h light, 12 h dark) to promote sporulation at 25 °C.
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Hosts: As pathogens of herbaceous plants in different families, most records refer to Asteraceae, and on leaves, branches, bark,
wood and dead stems of various trees and shrubs of Brassicaceae, Lamiaceae, Rutaceae, Salicaceae and Vitaceae. In addition,
some Plenodomus species are found as opportunistic or pathogenic fungi on Apiaceae, Bignoniaceae, Caprifoliaceae, Fabaceae,
Rosaceae, Ulmaceae and Umbelliferae.
Disease symptoms: Leaf spots, stem lesions, slow wilt, bark canker, root rot, shoot dieback.
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Notes: The genus Plenodomus was first established by Preuss (1851), and recently re-introduced and placed in the family
Leptosphaeriaceae by de Gruyter et al. (2013). The genus mainly consists of species that formerly belonged to Phoma section
Plenodomus and the sexual morph Leptosphaeria. Plenodomus includes several well-known important plant pathogens, such as
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Plen. biglobosus, Plen. lindquistii, Plen. tracheiphilus, and Plen. wasabiae.
References: Boerema et al. 2004 (morphology and pathogenicity); de Gruyter et al. 2013, Ariyawansa et al. 2015b (morphology
and phylogeny).
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Plenodomus deqinensis Q. Chen & L. Cai, sp. nov. MycoBank MB818821. Fig. 54.
Etymology: Named after the location where the holotype was collected, Deqin, Yunnan Province in China.
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Conidiomata pycnidial, solitary, globose to subglobose, glabrous, superficial, (150–)165–355 × (105–)125–305 µm; ostiole single,
slighty papillate with a narrow pore or opening via a rupture; conidiomatal wall pseudoparenchymatous, 3–6-layered, 16–28 µm
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thick, composed of isodiametric to oblong cells, outer layer brown. Conidiophores reduced to conidiogenous cells.
Conidiogenous cells phialidic, hyaline, smooth, ampulliform, 5–7 × 4–6.5 µm. Conidia ellipsoidal-cylindrical, smooth- and thin-
walled, aseptate, 3.5–5.5 × 1.5–2.5 µm, with 2 minute polar guttules. Conidial exudates not recorded. Sexual morph not
observed.
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Culture characteristics: Colonies on OA 35 mm diam after 1 wk, margin regular, floccose, white, pale grey near the centre;
reverse white to slightly pale olivaceous. Colonies on MEA 17–23 mm diam after 1 wk, margin irregular, aerial mycelia sparse,
pale green; reverse concolourous. Colonies on PDA 25–27 mm diam after 1 wk, margin regular, floccose, white, greyish brown
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near the centre; reverse buff to amber. NaOH test negative.

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Material examined: China, Yunnan, Dequin, isolated from soil, Apr. 2011, M.M. Wang (holotype HMAS 247058, culture ex-type
CGMCC 3.18221 = LC 5189).
Notes: Plenodomus deqinensis was collected from soil on a snow mountain in China, and proved able to grow at a low
temperature (15 ºC). This species clustered with Plen. agnitus, Plen. fallaciosus and Plen. lupini in the phylogenetic tree (Fig.
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53). The NaOH test of Plen. deqinensis proved negative, while in Plen. agnitus it was positive (Boerema et al. 1994).
Morphologically, Plen. deqinensis differs from Plen. lupini in the slightly wider conidiogenous cells (5–7 × 4–6.5 µm vs. 3–8 × 3–6
µm), and being biguttulate (de Gruyter et al. 1993). Plenodomus fallaciosus has hitherto only been observed as a sexual morph.
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Authors: Q. Chen & L. Cai

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Protostegia Cooke, Grevillea 9: 19. 1880. Fig. 55.
Classification: Dothideomycetes, Dothideomycetidae, Capnodiales, Mycosphaerellaceae.
Type species: Protostegia eucleae Kalchbr. & Cooke. Slide holotype: IMI 230771. Epitype and ex-epitype cultures: PREM 60879,
CPC 23549 = CBS 137232.
DNA barcode (species): ITS. Table 16.

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Sexual morph unknown. Conidiomata pycnidial, immersed, becoming somewhat erumpent, solitary, exuding a mucoid conidial
cirrhus, pale brown, splitting the leaf surface, with central ostiole; conidiomatal wall brown, textura intricata. Conidiophores
reduced to conidiogenous cells. Conidiogenous cells hyaline, smooth, lining the inner cavity, lageniform to subcylindrical,
proliferating percurrently at apex. Conidia hyaline, smooth, scolecosporous, euseptate (adapted from Crous et al. 2015a).
Culture characteristics: Colonies erumpent, slow growing, with uneven or lobate, feathery margins and sparse to moderate aerial
mycelium. On MEA surface and reverse greyish sepia or surface pale olivaceous grey and reverse olivaceous grey; on OA
surface mouse grey or pale olivaceous grey, reverse olivaceous grey; on PDA surface greyish sepia or pale olivaceous grey,
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reverse mouse grey or olivaceous grey.
Optimal media and cultivation conditions: PNA incubated at 25 °C under continuous near-ultraviolet light to promote sporulation.
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Distribution: South Africa.
Hosts: Euclea divinorum, E. lanceolata, E. natalensis, E. racemosa and E. undulata.
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Disease symptoms: Leaf spots.
Notes: The genus Protostegia is thus far only known from South Africa, where it has been reported from leaves of various Euclea
spp. However, Euclea is widespread throughout Africa, and therefore Protostegia may be more widespread than currently
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known. Protostegia was introduced by Kalchbrenner & Cooke (1880) in order to accommodate Stegia magnoliae and the new
species Pr. eucleae, and then four more species were allocated in this genus. However, Dyko et al. (1979) transferred three of
these species to other genera and another two species were rejected as doubtful. Therefore, only the type species Pr. eucleae
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was retained and until now this genus has remained monotypic. Protostegia is characterised by immersed conidiomata with walls
of textura intricata, splitting the epidermis and appearing acervular, but having a well-developed ostiole (Dyko et al. 1979).
Recently Pr. eucleae was placed in the Mycosphaerellaceae together with Cytostagonospora martiniana and Phaeophleospora
spp. on the basis of phylogenetic analysis of ITS and LSU sequences (Crous et al. 2015a). Cytostagonospora martiniana can be
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distinguished from Protostegia by having percurrent and polyphialidic conidiogenous cells, and solitary to aggregated
conidiomata embedded in stromatic tissue (Quaedvlieg et al. 2013). Phaeophleospora differs by the production of pigmented
conidiogenous cells and conidia (Crous et al. 2009b).
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References: Dyko et al. 1979 (morphology); Crous et al. 2015a (morphology and phylogeny).
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Protostegia eucleicola Crous, sp. nov. MycoBank MB820822. Fig. 55.
Etymology: Name refers to the host genus it was isolated from, Euclea.
Conidiomata epiphyllous on living leaves, erumpent, solitary, not associated with leaf spots, exuding a mucoid conidial cirrhus
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that dries to a hard, dark brown crystalline droplet on the leaf surface, up to 250 µm diam, immersed, pale brown, splitting the
leaf surface, with central ostiole, 10–30 µm diam; conidiomatal wall brown, textura intricata. Conidiophores reduced to
conidiogenous cells. Conidiogenous cells hyaline, smooth, lining the inner cavity, lageniform to subcylindrical, 8–10 × 4–5 µm,
proliferating percurrently at apex. Conidia hyaline, smooth, curved, guttulate, apices subacutely rounded, basal cell tapering to a
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truncate hilum, 1.5–2 µm diam, 3–7-septate, (40–)50–70(–75) × (2.5–)3–4 µm.

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Culture characteristics: Colonies erumpent, slow growing, with lobate, feathery margins and sparse aerial mycelium; on MEA
surface and reverse greyish sepia; on OA surface mouse grey; on PDA surface greyish sepia, reverse mouse grey.
Material examined: South Africa, Western Cape Province, Porcupine Hills wine farm, between Botrivier and Villiersdorp, on
Euclea racemosa, 29 Dec. 2014, A.R. Wood (holotype CBS H-23110, culture ex-type CPC 27224 = CBS xxx).
Notes: With the description of Pr. eucleicola, the genus is presently known from only two species. Protostegia eucleae [conidia
(40–)50–75(–80) × (2–)2.5–3 µm] is morphologically similar to Pr. eucleicola [conidia (40–)50–70(–75) × (2.5–)3–4 µm],
although the conidia are slightly wider in the latter. The two species are best distinguished based on their DNA data. It is possible
that many collections originally reported as Pr. eucleae, actually represent Pr. eucleicola.
Authors: Y. Marin-Felix, A.R. Wood & P.W. Crous

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Pseudopyricularia Klaubauf et al., Stud. Mycol. 79: 109. 2014. Fig. 56.
Classification: Sordariomycetes, Sordariomycetidae, Magnaporthales, Pyriculariaceae.
Type species: Pseudopyricularia kyllingae Klaubauf et al. Holotype and ex-type culture: CBS H-21841, CBS 133597.
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DNA barcodes (species): ITS, rpb1, act, cal. Table 17. Fig. 57.
Sexual morph unknown. Conidiophores solitary, erect, straight or curved, branched or not, medium brown, smooth or finely
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roughened, septate. Conidiogenous cells integrated, terminal, rarely intercalary, medium brown, smooth or finely roughened, forming
a rachis with several protruding denticles usually flat-tipped. Conidia solitary, obclavate, pale to medium brown, smooth or/to finely
roughened, guttulate, 1–2-septate; hila truncate, slightly protruding, unthickened, not darkened (adapted from Klaubauf et al. 2014).
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Culture characteristics: Colonies smooth with sparse to moderate aerial mycelium. On MEA transparent, buff, honey to isabelline or
white with patches of greyish sepia. On OA transparent sometimes with patches of olivaceous grey or greyish sepia. On PDA
transparent, white, greyish sepia or olivaceous black.
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Optimal media and cultivation conditions: Sterile barley seed on SNA at 25 °C under continuous near-ultraviolet light to promote
sporulation.
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Distribution: Mainly found in Asia, but also in North America, Africa and New Zealand.
Hosts: Pathogens of Cyperaceae, but also found on Bothriochloa bladhii (Poaceae) and Typha orientalis (Typhaceae).
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Disease symptoms: Leaf spots.
Notes: Pseudopyricularia was one of the genera introduced recently in order to resolve the polyphyletic nature of Pyricularia
(Klaubauf et al. 2014). Pseudopyricularia is mainly distinguished from Pyricularia by having short, determinate, brown
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conidiophores with an apical rachis with flat-tipped denticles.

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Reference: Klaubauf et al. 2014 (morphology and phylogeny).
Pseudopyricularia bothriochloae (Crous & Cheew.) Y. Marín & Crous, comb. nov. MycoBank MB819002.
Basionym: Pyricularia bothriochloae Crous & Cheew., Persoonia 31: 229. 2013.
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Notes: This fungus was initially described as a new species of Pyricularia (Crous et al. 2013b) before Klaubauf et al. (2014)
introduced the new genus Pseudopyricularia. In the latter study, this species was incorporated in the phylogenetic analysis
based on LSU sequence data, but not in the combined analysis, since only ITS and LSU sequences were available. Although the
ex-type strain of Py. bothriochloae grouped in the Pseudopyricularia clade, a new combination was not proposed, as it could not
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be incorporated in the combined analysis. However, in the phylogenetic tree based on ITS and LSU sequences (Fig. 57), Py.
bothriochloae was located in the Pseudopyricularia clade (100 % bootstrap support / 1 Posterior Probability) and accordingly the
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new combination, Py. bothriochloae, is made here. This species produces conidiophores with apical rachis with flat-tipped
denticles with periclinal thickening, which characterises Pseudopyricularia spp.
Pseudopyricularia spp. are mainly pathogens of Cyperaceae. However, this species was found on Bothriochloa bladhii
(Poaceae), producing angular leaf spots. Morphologically, Py. bothriochloae can be easily distinguished by the 1-septate conidia
(2-septate in all the other species).
Puccinia Pers., Neues Mag. Bot. 1: 118. 1794. Fig. 58.

For synonyms see Cunningham (1931).
Classification: Basidiomycota, Pucciniomycotina, Pucciniomycetes, Pucciniales, Pucciniaceae.

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Type species: Puccinia graminis Pers. Designated as type species of Puccinia by Cunningham (1931) on cultivated Triticum;
lectotypified by Jørstad (1958).
DNA barcodes (genus): ITS, LSU.
DNA barcode (species): ITS (evidence for intraspecific and intra-isolate diversity). Table 18. Fig. 59.
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Spermogonia dark brown to black, often on adaxial leaf surface, subepidermal, concave hymenia with well-developed periphyses
at ostiole [Group V, type 4 sensu Hiratsuka & Hiratsuka (1980)]. Spermatia exuded in droplets, small, aseptate, hyaline. Aecia
erumpent, usually abaxial, cup-shaped, with well-developed peridium; peridial cells irregular and verrucose. Aeciospores catenulate,
globose to subglobose, verruculose. Uredinia subepidermal or erumpent, on both leaf surfaces and stems, without peridium, pale
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yellow to brown. Paraphyses either absent, peripheral or within the sorus. Urediniospores borne singly on pedicels, mostly
echinulate, usually globose, subglobose, ellipsoid to obovoid, germ pores absent or conspicuous. Telia subepidermal or erumpent,
mostly dark brown to black, on both leaf surfaces and stems. Teliospores typically 2-celled by transverse or oblique septa (but may
have variations of 1–4 cells in some species), borne singly on pedicels, mostly pale to dark brown, cell walls smooth or ornamented.
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Basidia transversely septate (phragmobasidia), 2–4 celled, external. Basidiospores formed singly from each basidial cell on a
sterigma, sometimes ballistosporic.
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Hosts: Species of Puccinia are obligate plant pathogens that occur on host species in many families, especially Asteraceae,
Cyperaceae, Fabaceae, Lamiaceae, Liliaceae s. lat., Malvaceae and Poaceae. Heteroecious species of Puccinia, e.g. Pu. graminis,
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require two host plant species to complete their life cycle. The spermogonia and aecia of heteroecious species occur on one host
species, while the uredinia and telia occur on another, often unrelated, host species. Autoecious species complete their life cycle on
one host species. There are many variations in the life cycles of species of Puccinia. For example, some species, e.g. Pu.
Lagenophorae, do not form spermogonia or uredinia. Other species are known only from their telia, or telia and spermogonia, e.g.
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Pu. malvacearum and Pu. grevilleae. Frequent host jumps in the evolution of Puccinia and related genera have resulted in closely
related species of Puccinia across wide host ranges, as well as distantly related species that occur on the same host plant
species (Maier et al. 2007, van der Merwe et al. 2008, Dixon et al. 2010, McTaggart et al. 2016a).
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Disease symptoms: Spermogonia, aecia (Fig. 58A, B), uredinia (Fig. 58C, G) and telia (Fig. 58H, I) occur on leaves and stems, often
associated with chlorotic lesions, sometimes on bullate swellings, solitary or scattered or aggregated in groups, arranged linearly or
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concentrically or irregularly, often erumpent, in cases of severe infection leaves prematurely wilt and senesce.
Notes: The starting publication for names of all rust fungi for purposes of priority as provided by Art. 13 of the International Code
of Nomenclature for algae, fungi, and plants (ICN) (McNeill et al. 2012) is the Synopsis Methodica Fungorum by Persoon (1801),
who listed 11 species of Puccinia, 19 species of Aecidium and 30 species of Uredo. The genera Aecidium, Uredo and Puccinia
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were established for rust fungi with aecia, uredinia and telia, respectively. Many species described in these three genera are
conspecific, e.g. the lectotype of Aecidium berberidis designated by Clements & Shear (1931) is the aecial stage of Pu. graminis.
There is little possibility that Aecidium and Uredo (asexual genera) will displace Puccinia (sexual genus) under Art. 57.2 of the
ICN (McNeill et al. 2012). Whether Uredo is a synonym of Puccinia depends on the phylogenetic placement of Uromyces
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beticola, the lectotype of Uredo (Laundon 1970). A taxonomic working group on the Basidiomycota in 2011 recommended the
use of Uredo for uredinial species that could not be assigned to a monophyletic sexual genus (available at:
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http://www.imafungus.org/Issue/31/05.pdf). Many species of Aecidium and Uredo will need to be transferred to Puccinia, or other
monophyletic genera, in order to preserve the one name equals one fungus principle (Hawksworth et al. 2011).
There are about 4 000 described species of Puccinia (Kirk et al. 2008), which have mostly been delimited by host
taxon. Many of these species have diversified in the last 50 million years as a result of host jumps (McTaggart et al. 2016b), with
the aecial host serving as a pathway for further speciation (van der Merwe et al. 2008). The morphology of teliospores and
urediniospores is often sufficient to distinguish species of Puccinia that occur on the same host. Molecular approaches have
uncovered cryptic diversity in some species of Puccinia (Liu & Hambleton 2013) as well as linking aecial to telial morphs in the
life cycles of heteroecious rusts (Jin et al. 2010). Other studies have shown there is less species biodiversity in some rusts than
previously thought, e.g. Pu. lagenophorae and closely related species (Scholler et al. 2011, McTaggart et al. 2014). Intraspecific
and intra-isolate diversity of the ITS region was found in Pu. horiana and Pu. kuehnii (Virtudazo et al. 2001, Alaei et al. 2009).
Multiple haplotypes and paralogous copies of the ITS region within species of rust must be considered for phylogenetic and
molecular barcode studies.
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Phylogenetic studies have identified several sexual genera as potentially congeneric with Puccinia. Puccinia is
either paraphyletic or polyphyletic with respect to Ceratocoma (McTaggart et al. 2016b), Cumminsiella (Maier et al. 2003),
Dietelia (Wingfield et al. 2004), Diorchidium (Beenken & Wood 2015), Endophyllum (Maier et al. 2003), Macruropyxis
(Beenken & Wood 2015), Miyagia (Wingfield et al. 2004), Sphenospora (Aime 2006) and Uromyces (Maier et al. 2003).
Three major clades that contained Puccinia and related genera were identified in molecular phylogenetic studies (van der
Merwe et al. 2008, Dixon et al. 2010). One clade diversified on Cyperaceae, Juncaceae and orders of plants in the asterids
and rosids (The Angiosperm Phylogeny 2016), and the another on Poaceae and Ranunculaceae (van der Merwe et al.
2008). A third clade included species of Puccinia on Poaceae (Dixon et al. 2010). The relationships between the major
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clades in Puccinia can be observed in our phylogenetic analysis (Fig. 59).
Uromyces requires particular consideration as it has long been thought an aseptate variant of Puccinia (Sydow &
Sydow 1904, Savile 1978). Morphology alone does not reliably separate Puccinia and Uromyces, because puccinioid (2-celled)
and 1-celled spores and characteristics of the pedicel are homoplasious in the Pucciniales (Maier et al. 2007, Minnis et al. 2012,
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Beenken & Wood 2015). Several studies have shown that Puccinia and Uromyces are polyphyletic, and furthermore that
Puccinia is paraphyletic with respect to the type of Uromyces (U. appendiculatus) and other species of Uromyces on Fabaceae
(Maier et al. 2007, van der Merwe et al. 2008). Consequently, either a taxonomy that accepts Puccinia as a paraphyletic group
must be adopted or Uromyces must be synonymised under Puccinia. In the latter case, many important species of Uromyces will
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require name changes. The traditional use of Uromyces for species with aseptate teliospores has been replaced by a
phylogenetic approach; for example, Demers et al. (2017) used a phylogenetic approach to describe two species of Puccinia with
aseptate teliospores, which would have been described as Uromyces based on morphology.
The future of Puccinia depends on whether it can be divided into monophyletic genera or sub-genera that reflect
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synapomorphies or ecological relationships on which a natural classification can be based. A broad concept of Puccinia that
accepts species with puccinioid spores that are recovered in closely related clades as defined by van der Merwe et al. (2008)
and Dixon et al. (2010) is adopted here. Based on this molecular phylogenetic taxonomic concept, we have transferred four
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species of Uredo from the Australasian region to Puccinia. Further examples of taxa recovered in Puccinia, include Aecidium
kalanchoe (Hernádez et al. 2004) and Uredo guerichiani (Maier et al. 2007). We have chosen not to make new combinations of
these species without examination of a specimen. Molecular phylogenetic support must be an essential requirement for the
description of new species or new combinations in Puccinia because several species known from an anamorphic stage have an
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affinity with other genera of rust fungi, e.g. Uredo rolliniae (now Phakopsora rolliniae) (Beenken 2014).
References: Sydow & Sydow 1904 (morphology); Cummins & Hiratsuka 2003 (biology, morphology and taxonomy).
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Puccinia dianellae (Dietel) McTaggart & R.G. Shivas, comb. nov. MycoBank MB819750.
Basionym: Uredo dianellae Dietel, Hedwigia 37: 213. 1898.
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Material examined: Philippines, Benguet, Tuba, Mount Santo Tomas, on Dianella javanica, 26 Jun. 2012, K.L. Lancetta, V.A.
Felices, T.U. Dalisay, A.I. Llano, A.R. McTaggart, R.G. Shivas & M.D.E. Shivas (BRIP 57433).
Notes: Puccinia dianellae was recovered in a monophyletic group with species of Puccinia on Hemerocallidaceae (McTaggart et
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al. 2016a). Telia have not been reported.
Puccinia geitonoplesii (McAlpine) McTaggart & R.G. Shivas, comb. nov. MycoBank MB819751.
Basionym: Uredo geitonoplesii McAlpine, The Rusts of Australia, their Structure, Nature and Classification: 203. 1906.
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Material examined: Australia, Queensland, Coochiemudlo Island, Victoria Parade, on leaf of Geitonoplesium cymosum, 25 Aug.
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2012, C. Doungsa-ard & A.R. McTaggart (BRIP 57603).
Notes: Puccinia geitonoplesii was recovered in a monophyletic group with species of Puccinia on Hemerocallidaceae (McTaggart
et al. 2016a). Telia have not been reported. Morphological identification of P. geitonoplesii can be assisted by the Rust Fungi of
Australia Lucid Key (Shivas et al. 2014) (http://collections.daff.qld.gov.au/web/key/rustfungi/).
Puccinia merrilliana (Syd. & P. Syd.) McTaggart & R.G. Shivas, nom. nov. MycoBank MB819752.
Basionym: Uredo operculinae Syd. & P. Syd., Philipp. J. Sci., C, Bot. 8: 476. 1913.
Material examined: Australia, Western Australia, Kununurra, Ivanhoe Crossing turnoff, on leaf of Operculina aequisepala, 16
Apr. 2012, M. Butt, C. Doungsa-ard, A.R. McTaggart, R. Berndt, V. Faust-Berndt, M.D.E. Shivas & R.G. Shivas (BRIP 56913).
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Notes: Uredo operculinae was first described on Operculina turpethum from the Philippines (Sydow & Sydow 1913). The transfer
of U. operculinae to Puccinia requires a new name, Pu. merrilliana, as Pu. operculiniae is already occupied for a rust on O.
turpethum in the Malabar region in southern India (Ramakrishnan & Sundaram 1953). The new name honours Elmer Drew
Merrill (1876‒1956), an American botanist, who collected this fungus while living in the Philippines, where he became an expert
on the flora of the Asia-Pacific region. Puccinia merrilliana has fewer (1‒2) germ pores than Pu. operculinae, which has 3‒4
germ pores. Telia have not been reported for Pu. merrilliana. The specimens examined from Australia are morphologically
identical to the type description by Sydow & Sydow (p. 425, 1924). Morphological identification of Pu. merrilliana can be assisted
by the Rust Fungi of Australia Lucid Key (Shivas et al. 2014) (http://collections.daff.qld.gov.au/web/key/rustfungi/). Puccinia
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merrilliana was recovered in Puccinia in Group I sensu van der Merwe et al. (2008).
Puccinia rhagodiae (Cooke & Massee) McTaggart & R.G. Shivas, comb. nov. MycoBank MB819756.
Basionym: Uredo rhagodiae Cooke & Massee, Grevillea 15 (no. 76): 99. 1887.
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Material examined: Australia, Tasmania, Lilico Beach, on leaf of Chenopodium candolleanum, 15 Dec. 2013, A.R. McTaggart,
L.S. Shuey, M.D.E. Shivas & R.G. Shivas (BRIP 60078).
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Notes: Puccinia rhagodiae was recovered in Puccinia group I sensu van der Merwe et al. (2008). Telia have not been reported.
Several other species of Puccinia on Amaranthaceae were shown to be closely related, including Pu. arthrocnemi, Pu. bassiae
and Pu. tetragoniae, although they did not form a monophyletic group. Morphological identification of Pu. rhagodiae can be
assisted by the Rust Fungi of Australia Lucid Key (Shivas et al. 2014) (http://collections.daff.qld.gov.au/web/key/rustfungi/).
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ITS and LSU sequences are available for approximately 200 species of Puccinia on GenBank (accessed 5 Sep. 2016).
These two gene regions are generally reliable as a molecular barcode for identification of species of Puccinia. GenBank numbers
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for some of the most important species of Puccinia that are associated with a herbarium specimen, reference genome sequence,
or peer reviewed study, are provided in Table 18.
Authors: A.R. McTaggart & R.G. Shivas

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Saccharata Denman & Crous, CBS Biodiversity Ser. (Utrecht) 2: 104. 2004. Fig. 60.
Classification: Dothideomycetes, Incertae sedis, Botryosphaeriales, Saccharataceae.

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Type species: Saccharata proteae (Wakef.) Denman & Crous. Holotype and ex-type culture: PREM 32915, STE-U 1694.
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DNA barcodes (species): ITS, rpb2, tef1, tub2. Table 19.
Ascomata epiphyllous, separate, becoming aggregated, unilocular, immersed, substomatal, with a central, flattened ostiole,
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surrounded by a continuous, clypeus-like apical thickening of the wall, obovoid, slightly depressed; ascomata wall consisting of 8–11
layers of brown pseudoparenchymatous textura angularis. Pseudoparaphyses hyaline, septate, branched, frequently attached to
the top and base of the pseudothecial cavity. Asci clavate to cylindrical, stipitate, bitunicate, fissitunicate; apical chamber visible as a
notch-like indentation at the apex. Ascospores uni- to biseriate, hyaline, guttulate, smooth, ellipsoidal, clavate to fusiform, frequently
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widest in the upper third of the ascospore, tapering to obtuse ends. Conidiomata pycnidial, black, opening by a single, central ostiole,
infrequently embedded in stromatic tissue with thickened, darkened upper layer; conidiomatal wall consisting of 2–3 layers of
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brown textura angularis. Conidiophores hyaline, smooth, subcylindrical, branched, or reduced to conidiogenous cells, lining the inner
layer of the cavity, 1–3-septate. Paraphyses intermingled among conidiophores, hyaline, smooth, subcylindrical, unbranched or
branched above, with obtuse ends, 0–3-septate, extending above conidiophores or slightly above the conidia. Conidiogenous
cells hyaline, smooth, phialidic, proliferating via periclinal thickening or percurrent proliferation, with or without collarettes. Conidia
hyaline, smooth, thin-walled, aseptate, granular, fusiform to narrowly ellipsoid or fusoid-ellipsoid, apex subobtuse, base
subtruncate or truncate with minute marginal frill, widest in the middle of the conidium. Synasexual morph formed in separate
conidiomata, or in same conidiomata with asexual morph. Synasexual conidia pigmented, thick-walled, finely verruculose,
ellipsoid or oval, aseptate. Spermatogonia similar to conidiomata in anatomy. Spermatogenous cells ampulliform to lageniform or
subcylindrical, hyaline smooth, phialidic. Spermatia developing in conidiomata or spermatogonia, hyaline, smooth, granular,
subcylindrical or dumbbell-shaped, with rounded ends (adapted from Crous et al. 2004a and Slippers et al. 2013).
Culture characteristics: Colonies on PDA, OA and MEA spreading, with moderate aerial mycelium, usually erumpent, less frequent
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flat, margins irregular; surface and reverse show different shades of grey.
Optimal media and cultivation conditions: On OA or PNA at 25 °C under continuous near-ultraviolet light to promote sporulation.
Distribution: Commonly found in South Africa, but also Australia, North America (incl. Hawaii) and Europe.
Hosts: Members of Proteaceae, especially in species of Banksia, Hakea, Isopogon, Lambertia, Leucospermum, Petrophile and
Protea. Also found on Daviesia (Fabaceae), Encephalartos (Zamiaceae), and Eucalyptus (Myrtaceae) (see Crous et al. 2016b).
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Disease symptoms: Leaf tip die-back and leaf spots.
Notes: Saccharata is the only genus located in the family Saccharataceae, which was recently introduced by Slippers et al.
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(2013). This genus was described by Crous et al. (2004a) in order to accommodate “Botryosphaeria” proteae, and subsequently
several additional species were added to the genus from South Africa. All the species were found on Proteaceae expect
Saccharata kirstenboschensis, which was isolated from Encephalartos princeps (Crous et al. 2008). South African Saccharata
spp. that occur on Proteaceae can be distinguished from other members of Botryosphaeriales by their asexual morphology,
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which includes a hyaline, fusicoccum-like and a pigmented diplodia-like asexual morph (Crous et al. 2013a). However, Crous et
al. (2016b) introduced eight species from a range of hosts (Myrtaceae and Proteaceae) in Australia, and also widened the
generic concept to include the genus Neoseptorioides (3-septate, cylindrical conidia; Crous et al. 2015e). In spite of the range of
variation observed in the asexual morphs, morphology of the sexual morphs of Australian and South African species appear
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remarkably conserved.
References: Crous et al. 2008, 2013a, 2016b (morphology and phylogeny).

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Saccharata leucospermi Crous, sp. nov. MycoBank MB820823. Fig. 61.
Etymology: Named for the host genus from which it was collected, Leucospermum.
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Conidiomata on PDA pycnidial, black, up to 300 µm diam, with a single, central ostiole; conidiomatal wall consisting of 2–3 layers
of brown textura angularis. Conidiophores subcylindrical, hyaline, smooth, frequently reduced to conidiogenous cells or branched
in apical part, 1–2-septate, 7–20 × 2–3.5 µm. Paraphyses rarely observed, intermingled among conidiophores, unbranched
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hyaline, smooth, 0–1-septate, 2–3 µm wide, extending above conidiophores. Conidiogenous cells terminal, subcylindrical,
hyaline, 7–10 × 2–3 µm, with periclinal thickening, rarely with percurrent proliferations. Conidia hyaline, smooth, fusiform to
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narrowly ellipsoid, apex subobtuse, base truncate with minute marginal frill, minutely guttulate, thin-walled, (13–)14–16(–19) ×
(4–)4.5(–5) µm.
Culture characteristics: Colonies on MEA at 25 °C in the dark after 1 wk: spreading, erumpent, surface crumpled, irregular, with
uneven, feathery margin and moderate aerial mycelium; surface pale mouse grey, reverse mouse grey.
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Material examined: South Africa, Western Cape Province, Kogelberg Nature Reserve, on leaf litter of Leucospermum
conocarpodendron subsp. viridum, 11 Jul. 2000, S. Marincowitz (holotype CBS H-20078, culture ex-type CBS 122694 = CPC
13698 = CMW 22197).
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Notes: In the treatment of microfungi occurring on leaf litter of Proteceae, Marincowitz et al. (2008a) listed CBS 122694 as a
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Saccharata sp., acknowledging the fact that it appeared to be different. Three other species are known from Protea leaves in
South Africa, namely S. proteae (conidia 20–30 × 4.5–6 µm; Denman et al. 1999), S. intermedia [conidia (17–)18–20(–22) ×
(3.5–)5–6 µm; Crous et al. 2009a], and S. hawaiiensis [conidia (17–)24–30(–38) × (4–)5–7(–8) µm; Yang et al. 2017].
Saccharata leucospermi can readily be distinguished from these three species by having smaller conidia.
Saccharata protearum Crous, sp. nov. MycoBank MB820824. Fig. 62.
Etymology: Named after the host genus from which it was collected, Protea.
Conidiomata pycnidial, eustromatic, to 400 µm diam, immersed, subepidermal, erumpent in culture, separate, or aggregated,
linked by a stroma, dark brown, uni- to multi-locular, walls consisting of dark brown textura angularis, ostiolate. Fusicoccum-like
asexual morph: Conidiophores hyaline, smooth, branched, subcylindrical, 1–3-septate, formed from the inner layer of the locule,
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10–30 × 2.5–3.5 µm, intermingled with hyaline, septate paraphyses. Conidiogenous cells phialidic, discrete or integrated,
hyaline, smooth, cylindrical, enteroblastic, proliferating percurrently with 1–2 annellations, 9–15 × 2.5–3.5 µm. Conidia hyaline,
thin-walled, aseptate, smooth, fusoid, widest in the middle or upper third of the conidium, with a subobtuse apex, and a truncate
base, (17–)20–25(–27) × (4–)4.5–5(–6) µm. Microconidial morph occurring in separate or the same conidiomata as the
fusicoccum-like asexual morph. Microconidiophores hyaline, smooth, branched, cylindrical, 1–3-septate, formed from the inner
layers of the locule, 20–30 × 2.5–3 µm. Microconidiogenous cells phialidic, discrete or integrated, hyaline, smooth, cylindrical,
determinate, with prominent periclinal thickening, 5–11 × 2–2.5 µm. Microconidia medium brown, thin-walled, finely verruculose,
guttulate, aseptate, subcylindrical to narrowly ellipsoid with rounded ends, (7–)10–15(–17) × (2.5–)3(–4) µm.
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Culture characteristics: Colonies on MEA at 25 °C in the dark after 1 wk: flat, spreading, with moderate aerial mycelium; surface
pale mouse grey with patches of dirty white, reverse mouse grey.
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Material examined: USA, Hawaii, Maui, on leaf of Protea sp., 16 Dec. 1998, P.W. Crous & M.E. Palm, (holotype CBS H-23111,
culture ex-type CPC 2169 = CBS 114569).
Notes: In the reassessment of Botryosphaeriaceae and allied taxa published by Marincowitz et al. (2008b), the ITS DNA data
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could not distinguish CBS 114569 from isolates of S. proteae. However, in the recent study of Yang et al. (2017), the combined
sequence dataset (tef1, ITS and rpb2), showed CBS 114569 to cluster basal to S. hawaiiensis. Morphologically, conidia of
isolates of CBS 114569 [(17–)20–25(–27) × (4–)4.5–5(–6) µm] are also smaller than those of S. hawaiiensis [(17–)24–30(–38) ×
(4–)5–7(–8) µm; Yang et al. 2017], and thus this isolate is herewith introduced as a new species, S. protearum.
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Authors: Y. Marin-Felix, S. Marincowitz & P.W. Crous
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Thyrostroma Höhn., Sitzungsber. Kaiserl. Akad. Wiss., Math.-Naturwiss. Cl., Abt. 1 120: 472 (94 repr.). 1911. Fig. 63.

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Type species: Thyrostroma compactum (Sacc.) Höhn. Holotype could not be located, and a neotype from Europe is required.

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DNA barcodes (species): ITS and tef1. Table 20. Fig. 64.
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Sexual morph unknown. Conidiomata sporodochial, punctiform, dark brown or black. Stroma immersed to superficial, brown.
Conidiophores brown, finely roughened, cylindrical to subcylindrical, 1–3-septate. Conidiogenous cells brown, subcylindrical, finely
roughened, proliferating percurrently at apex. Conidia cylindrical, clavate, or ellipsoid to fusoid, pale to medium brown, smooth-
walled, with (1–)4 transverse septa, and 0–3 oblique or longitudinal septa, rounded at the apex, base truncate.
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Culture characteristics: Colonies reaching 90 mm diam after 2 wk, with sparse or fluffy aerial mycelium. Colonies on MEA, PDA and
OA showing different shades of grey or chestnut to umber.
Optimal media and cultivation conditions: MEA, PDA and OA at 25 °C.

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Distribution: Asia, Europe and North America.

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Hosts: Pathogens of Ulmus spp., Sambucus caerulea, Styphnolobium japonicum, Tilia spp., and Cornus officinalis.
Disease symptoms: Thyrostroma canker, dieback and leaf spots.
Notes: Thyrostroma was introduced in 1911 in order to accommodate T. compactum (von Höhnel 1911). Despite being
described more than 100 years ago, the phylogenetic position of Thyrostroma remains unresolved. Thyrostroma was considered
the asexual morph of Dothidotthia by Phillips et al. (2008). Subsequently, Slippers et al. (2013) placed Thyrostroma in the
Botryosphaeriaceae based on morphology, since molecular data of Thyrostroma spp. were lacking. In the phylogenetic trees
based on LSU sequences (Fig. 49), the type species of Thyrostroma, T. compactum, does not cluster with Dothidotthia
(Dothidotthiaceae), demonstrating that these genera are not congeneric, as was recently mentioned by Crous et al. (2016e).
However, Thyrostroma did cluster in the Dothidotthiaceae clade, as originally proposed by Phillips et al. (2008).
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References: Ellis 1959, 1971, Crous et al. 2016e (morphology).
Thyrostroma franseriae Crous, sp. nov. MycoBank MB820825. Fig. 63.
Etymology: Named after the host genus from which it was collected, Franseria.
Sporodochia dark brown, punctiform, up to 250 µm diam. Stromata brown, superficial, 100–150 µm diam. Conidiophores brown,
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finely roughened, subcylindrical, 0–1-septate, 10–18 × 6–11 µm. Conidiogenous cells brown, subcylindrical, finely roughened,
proliferating percurrently at apex, 5–10 × 6–11 µm. Conidia brown, ellipsoid to fusoid, with 2–4 oblique or longitudinal septa, 1–3
transverse septa, apex broadly obtuse, base truncate, 8–9 µm diam, (25–)28–33(–35) × (18–)20–25 µm.
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Culture characteristics: Colonies flat, spreading, with sparse aerial mycelium and feathery margins, reaching 60 mm diam after 2
wk on MEA, PDA and OA; surface and reverse iron-grey.
Specimens examined: USA, Nevada, Death Valley, on dead leaf of Franseria sp., 7 Jul. 1970, F.W. Went (holotype CBS H-
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23112, culture ex-type CBS 487.71); Nevada, north end of Death Valley, on green, living leaf of Franseria sp., Jul. 1970, F.W.
Went, CBS H-18568, culture CBS 700.70.
Notes: Thyrostroma franseriae is known from two isolates, both of which were collected from leaves of Franseria sp. in Death
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Valley, Nevada (USA) in 1970. Morphologically, isolate CBS 700.70 differs from CBS 487.71 in having larger conidia that are
more cylindrical, clavate to ellipsoid, with 2–4 transverse septa, 2–8 oblique or longitudinal septa, 40–65 × 18–25 µm. However,
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the two isolates are phylogenetically indistinguishable (Fig. 64).
Thyrostroma compactum is a European species originally described from Ulmus in Italy. One such isolate was
available for study, namely CBS 335.37, collected by J.C. Carter (a US-based researcher), but the origin of this strain remains
unknown, and it proved to be sterile in culture. Phylogenetically, however, CBS 335.37 is distinct from T. franseriae (Fig. 64),
although we could not confirm that CBS 335.37 is authentic for the name it was deposited under by J.C. Carter.
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Venturia Sacc., Syll. fung. (Abellini) 1: 586. 1882. Fig. 65.

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Synonyms: Fusicladium Bonord., Handb. Mykol.: 80. 1851.

Apiosporina Höhn., Sitzungsber. Kaiserl. Akad. Wiss., Math.-Naturw. Cl., Abt. 1, 119: 439. 1910.
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Metacoleroa Petr., Ann. Mycol. 25: 332. 1927.

Caproventuria U. Braun, A Monograph of Cercosporella, Ramularia and Allied Genera (Phytopathogenic Hyphomycetes) 2: 396.
1998.
Pseudocladosporium U. Braun, A Monograph of Cercosporella, Ramularia and Allied Genera (Phytopathogenic Hyphomycetes)
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2: 392. 1998.
Classification: Dothideomycetes, Pleosporomycetidae, Venturiales, Venturiaceae.
Type species: Venturia inaequalis (Cooke) G. Winter. Type material in Kew: IMI 47413.
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DNA barcodes (species): ITS, tef1, tub2. Table 21. Fig. 66.
Ascomata pseudothecial, globose, subglobose, black, initially immersed, becoming erumpent, solitary, scattered or gregarious,
covered with setae; ostiole central, papillate; ascomatal wall composed of a few layers of pigmented cells of textura angularis,
which is of equal thickness or slightly thickened at apex. Hamathecium comprising septate, filiform pseudoparaphyses, evanescent
in mature ascomata. Asci bitunicate, oblong to obclavate, fissitunicate dehiscence unknown, with or without a short, thick pedicel,
rounded at the apex with an inconspicuous ocular chamber. Ascospores obliquely uniseriate, partially overlapping to biseriate,
especially at the base, ellipsoidal, with broadly rounded ends, pale brown, 1-septate, slightly constricted at the septum, the upper
cell shorter than the lower one, smooth-walled. Conidiophores single, sometimes arranged in small groups, straight to flexuous,
pale olivaceous to dark brown, unbranched or occasionally branched, thin- to slightly thick-walled, conidiophores often reduced
to conidiogenous cells or composed of several cells. Conidiogenous nodes smooth to verrruculose. Conidia in simple or branched
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acropetal chains, ellipsoid-ovoid, obovoid, fusoid, obclavate-subcylindrical, canoe-shaped, straight to curved, subhyaline to
medium brown, but mostly olivaceous, thin- to thick-walled, smooth to verruculose, 0–3(–4)-euseptate, germinating by production
of germination tubes from middle or polar cells; hila often denticle-like, somewhat protuberant, unthickened or almost so,
occasionally somewhat darkened-refractive; septum ontogeny: first septum median to sub-median.
Culture characteristics: Colonies on PDA fuscous-black, and reverse dark fuscous-black, with moderate aerial mycelium and regular,
but feathery margins. Colonies normally reaching not more than 15 mm diam after 1 mo on PDA at 25 °C in the dark.
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Optimal media and cultivation conditions: PDA, MEA and CMA. Optimal growing temperature is 24–28 °C. Grows faster after cold-
shock under 10 °C for 1 wk.
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Hosts: Mainly on woody dicotyledonous plants. Twenty-four families of plants have been reported hosting venturiaceous fungi, i.e.
Aceraceae, Amaryllidaceae, Asteraceae, Betulaceae, Caprifoliaceae, Cornaceae, Dipsacaceae, Ericaceae, Fagaceae,
Gentianaceae, Geraniaceae, Iridaceae, Juncaginaceae, Liliaceae, Onagraceae, Oleaceae, Polygonaceae, Ranunculaceae,
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Rhamnaceae, Rosaceae, Rubiaceae, Salicaceae, Sapindaceae and Ulmaceae (Barr 1968, 1989, Sivanesan 1977). After
studying a large number of type materials of Venturia species, many have been found to be representative of other genera (Shen
et al. in prep.).
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Disease symptoms: Leaf spots, flower and fruit canker.
Notes: Species of Venturia are widely distributed in the northern temperate region of the world, and are saprobic or parasitic on a
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large variety of dicotyledonous plants. Venturia comprises 198 species according to Index Fungorum. Based on the morphology
of type specimens studied, the diagnostic characteristics of Venturia are as follows: Ascomata immersed, semi-immersed or
superficial, scattered or gregarious, often papillate and ostiolate with setae. Hamathecium narrowly cellular, hyaline, evanescent
in mature ascomata. Asci 8-spored, bitunicate, fissitunicate, broadly cylindrical to obclavate, usually lacking a pedicel.
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Ascospores pale olivaceous to brown, 1-septate, usually asymmetrical. Morphological discrimination of the sexual morph is
limited, and the asexual morph is more informative (Sivanesan 1977). The genus is morphologically comparable to the
Mycosphaerella morph of Ramularia in having bitunicate, oblong to obclavate asci with a short, thick pedicel or pedicel lacking,
ellipsoidal, 1-septate ascospores which are slightly constricted at the septum. However, Venturia can be distinguished from the
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sexual morph of Ramularia by its setose ascomata, pale olivaceous to brown and asymmetrical ascospores. In addition,
pseudoparaphyses are lacking in the sexual morph of Ramularia. Although several studies have been conducted on the
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phylogeny of Venturia, they mostly relied on rDNA sequences of the ITS and LSU, which proved insufficient in distinguishing
some species (Crous et al. 2007d, Zhang et al. 2011). More genes, especially protein coding genes are required to provide a
better resolution at the species level.
References: Menon 1956, Nüesch 1960, Barr 1968, Sivanesan 1977 (morphology); Schubert et al. 2003 (morphology of asexual
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stage); Crous et al. 2007d, Zhang et al. 2011, 2016 (morphology and phylogeny).
Venturia phaeosepta Y. Zhang ter & J.Q. Zhang, sp. nov. MycoBank MB817355. Fig. 67.
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Etymology: Latin “phaeo-”, in reference to “dark” septum.

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On Populus: Leaf spots amphigenous, subcircular to angular, 1.5–13 mm wide, often confluent, diffuse, mostly spread along leaf
veins, dark brown to black, with an irregular margin. Colonies amphigenous, caespitose, greenish brown to blackish. Mycelium
mainly subcuticular. Stromata variable in size, composed of pale olivaceous to brown, angular to rounded, thick-walled,
pseudoparenchymatous cells, 4–8 µm diam. Conidiophores solitary or loosely fasciculate, arising mostly from stromata or from
hyphae, erect, straight, sometimes flexuous at the apex, unbranched or apically branched, 12–29 × 5–8 µm, 0–1-septate, pale to
medium brown, smooth, with somewhat thickened walls, sometimes conidiophores reduced to conidiogenous cells.
Conidiogenous cells integrated, terminal, 15–27 × 5–8 µm, with a 1–2(–3) denticle-like conidiogenous loci, proliferation
sympodial, loci unthickened, not or only somewhat darkened-refractive, 2–3 µm wide. Conidia in simple or branched chains,
clavate, subcylindrical, ellipsoid or rarely fusiform, (12–)16–29 × 4–7 µm, pale olivaceous brown, 0–1(–3)-septate, smooth,
tapering towards both ends, apex mostly truncate, occasionally rounded or pointed, base truncate; hila often somewhat
thickened and darkened-refractive, 1.5–3 µm wide. Sexual morph not observed. On MEA: Mycelium consisting of pale
olivaceous, smooth, branched, 1.5–3 µm wide hyphae. Conidiophores integrated, produced in the middle of the mycelium, 3–6-
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septate, visible as small, protruding, denticle-like loci, up to 92 µm long, 5–6 µm wide. Conidiogenous cells subcylindrical, 15–25
× 5–7 µm, pale to medium olivaceous, smooth, tapering to 1–2 apical truncate loci, 2–4 µm wide. Conidia pale olivaceous,
smooth, subcylindrical to narrowly ellipsoid, occurring in simple or branched chains, 0–1(–2)-septate, tapering towards
subtruncate ends, ends 2–4 µm wide, aseptate conidia 12–21.5 × 5–7 µm, septate conidia up to 28 µm long and 5–7 µm wide;
basal hila usually thickened and darkened-refractive; microcyclic conidiation common in older cultures. Sexual morph not
observed.
Culture characteristics: Colonies reaching 43 mm diam after 1 mo on PDA at 25 °C in the dark. Colonies sporulated, erumpent,
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spreading, with abundant aerial mycelium and feathery to smooth margins; grey olivaceous (surface), reverse dark olivaceous.
Habitat and distribution: China (Henan, Shannxi), on leaves of Populus spp.
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Specimens examined: China, Henan, Puyang City Academy Experimental Farm, on leaves of Populus × euramericana cv. 74/76
(sect. Aigeiros), 20 May 2015, W. He (holotype, HMAS 246998, culture ex-type CGMCC3.18368); on leaves of Populus ×
euramericana cv. 74/76 (sects. Aigeiros), Y.F. Zhang, 20 Jun. 2015 (paratype, HMAS 246999, CGMCC3.18371); 6 August 2015
(paratype, HMAS 247000, CGMCC3.18373); 7 Aug. 2015 (paratype, HMAS 247002, CGMCC3.18374); 8 Aug. 2015 (paratype,
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HMAS 247001, CGMCC3.18375); Shanxi, Yangling, on leaves of Populus sp. (sects. Aigeiros), 4 Sep. 2015, Y.F. Zhang
(paratype, HMAS 247004, CGMCC3.18378); ibid. (paratype, HMAS 247005, CGMCC3.18379).
Notes: Among the reported venturiaceous species occurring on Populus, the asexual morph of Venturia phaeosepta is more
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comparable with Fusicladium martianoffianum and F. romellianum in the morphology of the conidiophore and mode of conidia
production (Schubert et al. 2003). Venturia phaeosepta, however, can readily be distinguished from F. martianoffianum by its 1–
2(–3) apical denticle-like conidiogenous loci (vs. a single or several (>3) conidiogenous loci of F. martianoffianum). Venturia
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phaeosepta differs from F. romellianum by its septate (vs. chiefly aseptate) conidia (Schubert et al. 2003).
Authors: Y. Zhang, M. Shen & J.Q. Zhang

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Wilsonomyces Adask. et al., Mycotaxon 37: 283. 1990. Fig. 68.

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Type species: Wilsonomyces carpophilus (Lév.) Adask. et al. Lectotype: plate 7, fig. 5 in Léveillé JH. 1843. Ann. Sci. Nat., Bot.,
sér. 2 19: 215. Epitype and ex-epitype culture designated here: CBS H-23113, CBS 231.89.
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DNA barcodes (species): ITS, tef1. Table 22. Fig. 64.

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Sexual morph unknown. Conidiomata sporodochial, usually punctiform, tan to olivaceous brown, finally becoming black. Stroma
present in host tissue, compact, immersed, erumpent, discoid on leaves, fusoid on twigs. Conidiophores macronematous,
mononematous, densely compacted, straight or flexuous, branched or not, subcylindrical, geniculate, smooth, subhyaline to pale
brown, cicatrized, 1–4-septate. Conidiogenous cells terminal and intercalary, subcylindrical, subhyaline, smooth, proliferating
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sympodially at apex, scars unthickened. Conidia holoblastic, solitary, dry, acrogenous, simple, thick-walled, cylindrical, clavate,
ellipsoidal or fusiform, occasionally forked, rounded to acute at the apex, truncate at the base, generally (2–)3–5(–10) transverse
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with occasionally 1–2 oblique septa, rarely with 1 longitudinal septum, subhyaline, becoming medium brown to golden-brown,
dark olivaceous to black in mass, conidia in vivo are larger (adapted from Adaskaveg et al. 1990).
Culture characteristics: Growth moderate, PDA plates covered in 4 wk, mostly consisting of submerged hyphae with sparse aerial
mycelium. In cultures grown in the dark, aerial mycelium sub-felty to felty, initially white becoming pale olive-grey to greyish olive,
occasionally olive-ochre. In cultures grown exposed to light, submerged light brownish olive to olive-brown hyphae radiate outward
from mycelial mat; aerial hyphae buffy-brown; olivaceous black to black conidia produced in mass (more details in Adaskaveg et al.
1990).
Optimal media and cultivation conditions: PDA at 20 °C on the laboratory bench.
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Hosts: Pathogens mainly of Prunus spp., particularly peaches and apricots, but also of other members of the family Rosaceae, i.e.
Pyrus communis, Malus domestica, Sorbus aucuparia and Cydonia oblonga. Also reported in Cleome sp. (Cleomaceae) and
Quercus ilex (Fagaceae).
Disease symptoms: Wilsonomyces causes a disease known as shot-hole disease because of the symptoms on the host leaves:
small circular purple lesions with pale centres that gradually enlarge and become necrotic in the centre until the centre falls out. This
genus also produces necrotic spots on the twigs and necrotic lesions on fruit.
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Notes: Wilsonomyces is a monotypic genus. Wilsonomyces carpophilus was initially described as a new species of
Helminthosporium, and was subsequently transferred to different genera until Adaskaveg et al. (1990) introduced Wilsonomyces
to accommodate it. The taxonomy of the genus was controversial, and Sutton (1997) regarded it as synonym of Thyrostroma.
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However, all the strains of Wilsonomyces carpophilus included in the phylogenetic analysis based on LSU, ITS and tef1 (Fig. 49,
64) sequences were located in a clade separate from the rest of the taxa incorporated in the tree including the type species of
Thyrostroma, T. compactum. Therefore, it is herewith supported that Wilsonomyces represents a distinct genus. Finally, its
location in the Dothidotthiaceae is also supported.
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References: Ellis 1959, Adaskaveg et al. 1990 (morphology); Ahmadpour et al. 2012a (morphology and pathogenicity).
Wilsonomyces carpophilus (Lév.) Adask. et al., Mycotaxon 37: 283. 1990. Fig. 68.
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Basionym: Helminthosporium carpophilum Lév., Annls Sci. Nat., Bot., sér. 2 19: 215. 1843.
Synonyms: Clasterosporium carpophilum (Lév.) Aderh., Landw. Jahrb. 30: 815. 1901.
Coryneum carpophilum (Lév.) Jauch, Int. Bull. Pl. Protect. 14: 99. 1940.
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Stigmina carpophila (Lév.) M.B. Ellis, Mycol. Pap. 72: 56. 1959.
Sciniatosporium carpophilum (Lév.) Morgan-Jones, Canad. J. Bot. 49: 995. 1971.
Sporocadus carpophilus (Lév.) Arx, Gen. Fungi Sporul. Cult., Edn 3 (Vaduz): 224. 1981.
Thyrostroma carpophilum (Lév.) B. Sutton, Arnoldia 14: 34. 1997.
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For additional synonyms see Adaskaveg et al. (1990).
Conidiomata sporodochial, brown, with immersed to erumpent stromata, 30–200 µm diam. Conidiophores subcylindrical,
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branched or not, geniculate, 10–70 × 5–7 µm, subhyaline to pale brown, smooth, 1–4-septate. Conidiogenous cells terminal and
intercalary, subcylindrical, subhyaline, smooth, 10–30 × 5–7 µm, proliferating sympodially, scars unthickened, 3.5–5 µm diam.
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Conidia narrowly ellipsoid to subcylindrical or fusoid, subhyaline, becoming medium brown to golden-brown, smooth, with (2–)3–
7(–11) dark, transverse septa, rarely with any oblique septum, (27–)32–45(–55) × (12–)13–14(–16) µm, base truncate, 4–6 µm
diam in vitro. Conidia in vivo are larger, namely 20–90 × 7–16 µm (adapted from Adaskaveg et al. 1990).
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Culture characteristics: Colonies flat, spreading, with moderate aerial mycelium, and feathery margins, reaching 40 mm diam
after 2 wk. On MEA, PDA and OA surface umber, reverse isabelline.
Specimen examined: Lectotype: plate 7, fig. 5 in Léveillé JH. 1843. Ann. Sci. Nat., Bot., sér. 2 19: 215. Unknown country, on
petiole of Prunus subhirtella, 1989, J.W. Veenbaas-Rijks (epitype designated here CBS H-23113, MBT376057, culture ex-
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epitype CBS 231.89).

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Notes: The holotype of W. carpophilus was not located by Adaskaveg et al. (1990) when they introduced the genus
Wilsonomyces to accommodate Helminthosporium carpophilum, although they searched in several herbaria in Europe. The
holotype was probably lost when Léveillé’s collection was destroyed in the Franco-Prussian War in 1870–1871. Therefore,
Adaskaveg et al. (1990) selected the drawings of Léveillé present in the original description of this taxon as lectotype (Ann. Sci.
Nat., Bot., sér. 2 19: 215, plate 7, fig. 5). To fix the application of the generic name, an epitype for this species is therefore
designated here.
ACKNOWLEDGEMENTS
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Yasmina Marin-Felix is grateful for the financial support received from the Vice-Chancellor’s postdoctoral fellowship programme from University of Pretoria, South
Africa. Min Shen, Jiaqi Zhang and Ying Zhang are supported by the National Natural Science Foundation of China (General Program) (31370063). Sincere
thanks are due to the curators Rossella Marcucci (PAD) and Lisa A. Castlebury (BPI).
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PT
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U SC
AN
M
D
TE
C EP
AC
PT
Table 1. DNA barcodes of accepted Bipolaris spp.
RI
Species Isolates1 GenBank accession numbers2 References
ITS gapdh tef1
Bi. austrostipae BRIP 12490T KX452442 KX452408 KX452459 Tan et al. (2016)
C
Bi. axonopicola BRIP 11740T KX452443 KX452409 KX452460 Tan et al. (2016)
Bi. bamagaensis BRIP 13577T KX452445 KX452411 KX452462 Tan et al. (2016)
US
Bi. bicolor CBS 690.96 KJ909762 KM042893 KM093776 Manamgoda et al. (2014)
Bi. chloridis BRIP 10965T KJ415523 KJ415423 KJ415472 Tan et al. (2014)
Bi. clavata BRIP 12530T KJ415524 KJ415422 KJ415471 Tan et al. (2014)
BRIP 14845IsoT
AN
Bi. coffeana KJ415525 KJ415421 KJ415470 Tan et al. (2014)
Bi. cookei AR 5185 KJ922391 KM034833 KM093777 Manamgoda et al. (2014)
Bi. crotonis BRIP 14838 KJ415526 KJ415420 KJ415479 Tan et al. (2014)
Bi. cynodontis CBS 109894 KJ909767 KM034838 KM093782 Manamgoda et al. (2014)
M
Bi. drechsleri CBS 136207T KF500530 KF500533 KM093760 Crous et al. (2013b),
Manamgoda et al. (2014)
Bi. gossypina BRIP 14840T KJ415528 KJ415418 KJ415467 Tan et al. (2014)
D
Bi. heliconiae BRIP 17186T KJ415530 KJ415417 KJ415465 Tan et al. (2014)
Bi. heveae CBS 241.92 TE KJ909763 KM034843 KM093791 Manamgoda et al. (2014)
Bi. luttrellii BRIP 14643IsoT AF071350 AF081402 - Berbee et al. (1999)
Bi. maydis CBS 137271NT AF071325 KM034846 KM093794 Berbee et al. (1999),
Bi. microlaenae CBS 280.91T JN601032 JN600974 JN601017 Manamgoda et al. (2011)
EP
Bi. microstegii CBS 132550T JX089579 JX089575 KM093756 Crous et al. (2012a),
Bi. oryzae MFLUCC 10-0715NT JX256416 JX276430 JX266585 Manamgoda et al. (2012c)
C
Bi. panici-miliacei CBS 199.29LT KJ909773 KM042896 KM093788 Manamgoda et al. (2014)
Bi. peregianensis BRIP 12790T JN601034 JN600977 JN601022 Manamgoda et al. (2011)
AC
Bi. pluriseptata BRIP 14839IsoT KJ415532 KJ415414 KJ415461 Tan et al. (2014)
Bi. sacchari ICMP 6227 KJ922386 KM034842 KM093785 Manamgoda et al. (2014)
Bi. salkadehensis Bi 1T AB675490 - - Ahmadpour et al. (2012b)
Bi. salviniae BRIP 16571LT KJ415535 KJ415411 KJ415457 Tan et al. (2014)
Bi. saccharicola CBS 155.26T KY905674 KY905686 KY905694 Present study
PT
CBS 324.64 HE792932 KY905692 KY905699 Present study
da Cunha et al. (2012)
RI
CBS 325.64 KY905675 KY905687 KY905695 Present study
IsoLT
Bi. secalis BRIP 14453 KJ415537 KJ415409 KJ415455 Tan et al. (2014)
Bi. setariae CBS 141.31 EF452444 EF513206 - Andrie et al. (2008)
C
Bi. shoemakeri BRIP 15929T KX452453 KX452419 KX452470 Tan et al. (2016)
T
Bi. simmondsii BRIP 12030 KX452454 KX452420 KX452471 Tan et al. (2016)
US
Bi. sivanesaniana BRIP 15847T KX452455 KX452421 KX452472 Tan et al. (2016)
Bi. sorokiniana CBS 110.14 KJ922381 KM034822 KM093763 Manamgoda et al. (2014)
Bi. subramanianii BRIP 16226T KX452457 KX452423 KX452474 Tan et al. (2016)
AN
Bi. urochloae ATCC 58317 KJ922389 KM230396 KM093770 Manamgoda et al. (2014)
Bi. variabilis CBS 127716T KY905676 KY905688 KY905696 Present study
CBS 127736 KY905677 KY905689 - Present study
Bi. victoriae CBS 327.64T KJ909778 KM034811 KM093748 Manamgoda et al. (2014)
M
ET
Bi. yamadae CBS 202.29 KJ909779 KM034830 KM093773 Manamgoda et al. (2014)
CBS 127087 KY905673 KY905685 KY905693 Present study
(neotype of B.
D
euphorbiae)
Bi. woodii BRIP 12239T TE KX452458 KX452424 KX4524725 Tan et al. (2016)
IsoPT
Bi. zeae BRIP 11512 KJ415538 KJ415408 KJ415454 Tan et al. (2014)
Bi. zeicola FIP 532ET KM230398 KM034815 KM093752 Manamgoda et al. (2014)
1
AR, FIP: Isolates housed in Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture,
Agricultural Research Service, Beltsville, Maryland, USA; Bi: Isolates housed in the Department of Plant Protection, Faculty of
EP
Agricultural Sciences and Engineering, University College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran
(TUPP); ATCC: American Type Culture Collection, Virginia, USA; BRIP: Queensland Plant Pathology Herbarium, Brisbane,
Australia; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; ICMP: International Collection of Micro-
C
organisms from Plants, Landcare Research, Private Bag 92170, Auckland, New Zealand; MFLUCC: Mae Fah Luang University
Culture Collection, Chiang Ria, Thailand. T, ET, IsoT, IsoLT, IsoPT, LT and NT indicate ex-type, ex-epitype, ex-isotype, ex-isolectotype, ex-
AC
isoparatype, ex-lectotype and ex-neotype strains, respectively.

2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; gapdh: partial glyceraldehyde-3-phosphate dehydrogenase gene; tef1:
partial translation elongation factor 1-alpha gene.
PT
Table 2. DNA barcodes of accepted Boeremia spp.
RI
ITS act cal rpb2 tef1 tub2
Bo. crinicola CBS 109.79 GU237737 KY484558 KY484571 KT389563 - GU237489 Aveskamp et al. (2010),
C
Chen et al. (2015a), Bernet
et al. (2015)
Bo. diversispora CBS 102.80 GU237725 EU880861 KY484575 KT389565 KY484676 GU237492 Aveskamp et al. (2009b,
US
2010), Chen et al. (2015a),
Bernet et al. (2015)
Bo. exigua var. CBS 109183 GU237748 KY484560 KY484576 KT389566 KY484678 GU237505 Aveskamp et al. (2010),
coffeae Chen et al. (2015a), Bernet
AN
et al. (2015)
Bo. exigua var. CBS 431.74 FJ427001 EU880854 KY484584 KT389569 KY484687 FJ427112 Aveskamp et al. (2009a,b),
exigua Chen et al. (2015a), Bernet
et al. (2015)
M
Bo. exigua var. CBS 101213 GU237723 EU880868 KY484589 KT389571 KY484692 GU237494 Aveskamp et al. (2009b,
forsythiae 2010), Chen et al. (2015a),
D
Bo. exigua var. CBS 101150 GU237715 KY484562 KY484591 KT389568 KY484694 GU237495 Aveskamp et al. (2010),
gilvescens Chen et al. (2015a), Bernet
et al. (2015)
Bo. exigua var. CBS 443.94NT
TE
GU237866 EU880869 KY484598 KT389573 KY484700 GU237497 Aveskamp et al. (2009b,
heteromorpha 2010), Chen et al. (2015a),
Bo. exigua var. CBS 116.76 GU237754 EU880880 KY484604 KT389574 KY484705 GU237500 Aveskamp et al. (2009b,
EP
linicola 2010), Chen et al. (2015a).

Bo. exigua var. CBS 100167T GU237707 EU880885 KY484605 - KY484706 GU237501 Aveskamp et al. (2009b,
populi 2010), Bernet et al. (2015)
C
Bo. exigua var. CBS 101207T GU237721 EU880874 KY484609 - KY484710 GU237503 Aveskamp et al. (2009b,
pseudolilacis 2010), Bernet et al. (2015)
AC
Bo. exigua var. CBS 113651T KY484662 KY484566 KY484612 - KY484713 KY484760 Berner et al. (2015)
rhapontica
Bo. exigua var. CBS 100354 GU237711 EU880889 KY484613 KT389577 - GU237506 Aveskamp et al. (2009b,
viburni 2010), Chen et al. (2015a),
Bo. foveata CBS 109176 GU237742 EU880892 KY484614 KT389578 KY484714 GU237508 Aveskamp et al. (2009b,
PT
2010), Chen et al. (2015a),
RI
Bo. hedericola CBS 367.91 GU237842 KY484568 KY484618 KT389579 KY484718 GU237511 Aveskamp et al. (2010),
Chen et al. (2015a), Bernet
et al. (2015)
Bo. lilacis CBS 569.79 GU237892 EU880875 KY484619 - KY484721 GU237498 Aveskamp et al. (2009b,
C
2010), Bernet et al. (2015)
Bo. lycopersici CBS 378.67 GU237848 EU880898 KY484623 KT389580 KY484726 GU237512 Aveskamp et al. (2009b,
US
2010), Chen et al. (2015a),
Bo. noackiana CBS 100353 GU237710 EU880881 KY484624 - KY484727 GU237514 Aveskamp et al. (2009b,
2010), Bernet et al. (2015)
AN
Bo. sambuci-nigrae CBS 629.68T GU237897 KY484570 KY484630 - KY484734 GU237517 Aveskamp et al. (2010),
Bo. strasseri CBS 126.93 GU237773 EU880904 KY484631 KT389584 KY484735 GU237518 Aveskamp et al. (2009b,
2010), Chen et al. (2015a),
M
Bo. telephii CBS 109175 GU237741 EU880906 KY484633 KT389585 KY484737 GU237520 Aveskamp et al. (2009b,
2010), Chen et al. (2015a),
D
Bo. trachelospermi CGMCC 3.18222T KY064028 - - KY064033 - KY064051 Present study
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CGMCC: Chinese General Microbiological Culture Collection Center, Beijing,
TE
China. T and NT indicate ex-type and ex-neotype strains, respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; act: partial actin gene; cal: partial calmodulin gene; rpb2: partial RNA polymerase II second
largest subunit gene; tef1: partial translation elongation factor 1-alpha gene; tub2: partial β-tubulin gene.
C EP
AC
PT
Table 1. DNA barcodes of accepted Calonectria spp.
RI
tub2 cmdA tef1 his3 rpb2 ITS LSU
Crous et al. (2006a); Lombard et al.
Ca. acicola CBS 114812T DQ190590 GQ267359 GQ267291 DQ190693 KY653352 GQ280547 GQ280669
(2010c)
C
Ca. aconidialis CBS 136086T - KJ463017 KJ462785 KJ463133 - - - Lombard et al. (2015)
Ca. amazonica CBS 116250T KX784612 KX784555 KX784682 - KY653355 KY653241 KY653297 Lombard et al. (2016)
US
Ca. amazoniensis CBS 115440T KX784615 KX784558 KX784685 - KY653358 KY653244 KY653300 Lombard et al. (2016)
Crous & Kang (2001), Crous et al. (
Ca. angustata CBS 109065T AF207543 GQ267361 FJ918551 DQ190696 KY653359 GQ280548 GQ280671
2006); Lombard et al. (2010c,d)
Ca. arbusta CBS 136079T KJ462904 KJ463018 KJ462787 KJ463135 - - - Lombard et al. (2015)
Crous et al. (2004c); Lombard et al.
AN
Ca. asiatica CBS 114073T AY725616 AY725741 AY725705 AY725658 - GQ280550 GQ280672
(2010c)
Ca. australiensis CBS 112954T DQ190596 GQ267363 GQ267293 DQ190699 KY653361 GQ280552 GQ280674
(2010c)
Ca. blephiliae CBS 136425T KF777246 - KF777243 - - KF777141 KF777197 Crous et al. (2013b)
M
Ca. brachiatica CBS 123700T FJ696388 GQ267366 GQ267296 FJ696396 - GQ280555 GQ280677 Lombard et al. (2009, 2010c)
Ca. brasiliana CBS 111484T KX784616 KX784559 KX784686 - KY653362 KY653245 KY653301 Lombard et al. (2016)
Ca. brasiliensis CBS 230.51T GQ267241 GQ267421 GQ267328 GQ267259 KY653364 GQ280624 GQ280746 Lombard et al. (2010c)
Ca. brassiana CBS 134855T KM395969 KM396056 KM395882 KM396139 - - - Alfenas et al. (2015)
D
Crous et al. (1999, 2006); Lombard et
Ca. brassicae CBS 111869T AF232857 GQ267382 FJ918567 DQ190720 KM232308 GQ280576 GQ280698
al. (2009, 2010c)
CBS 112841T
Ca. brassicicola
Ca. brevistipitata
Ca. canadania
Ca. candelabrum
CBS 115671T
CBS 110817T
CPC 1675
KX784619
KX784623
AF348212
FJ972426
KX784561
KX784565
AY725743
GQ267367
TE
KX784689
KX784693
GQ267297
FJ972525
-
-
AF348228
FJ972476
-
-
KY653368
KY653369
-
KY653248
GQ280556
GQ280557
-
KY653304
GQ280678
GQ280679
Lombard et al. (2016)
Kang et al. (2001); Crous et al. (2004c);
Lombard et al. (2010c)
Lombard et al. (2010b,c)
EP
Ca. cerciana CBS 123693T FJ918510 GQ267369 FJ918559 FJ918528 - GQ280559 GQ280681 Lombard et al. (2009, 2010c)
Ca. chinensis CBS 114827T AY725619 AY725747 AY725710 AY725661 KY653371 GQ280561 GQ280683
(2010c)
Schoch et al. (2001); Lombard et al.
Ca. clavata CBS 114557T AF333396 GQ267377 GQ267305 DQ190623 KY653372 GQ280571 GQ280693
C
(2010c)
Ca. cliffordicola CBS 111812T KX784624 KX784566 KX784694 - KY653374 KY653249 KY653305 Lombard et al. (2016)
AC
T
Ca. colhounii CBS 293.79 DQ190564 GQ267373 GQ267301 DQ190639 KY653376 GQ280565 GQ280687
(2010c)
T
Ca. colombiana CBS 115127 FJ972423 GQ267455 FJ972492 FJ972442 - GQ280660 GQ280782 Lombard et al. (2010b,c)
T Crous et al. (2004c); Lombard et al.
Ca. colombiensis CBS 112220 GQ267207 AY725748 AY725711 AY725662 - GQ280566 GQ280688
(2010c)
Ca. crousiana CBS 127198T HQ285794 - HQ285822 HQ285808 - - - Chen et al. (2011)
PT
Ca. cylindrospora CBS 110666 FJ918509 GQ267423 FJ918557 FJ918527 KY653378 GQ280626 GQ280748
(2010c)
RI
Ca. densa CBS 125261T GQ267232 GQ267444 GQ267352 GQ267281 - GQ280647 GQ280769 Lombard et al. (2010c)
Ca. duoramosa CBS 134656T KM395940 KM396027 KM395853 - - - - Alfenas et al. (2015)
Ca. ecuadoriae CBS 111406T DQ190600 GQ267375 GQ267303 DQ190705 KY653381 GQ280569 GQ280691
C
(2010c)
T
Ca. ecuadorensis CBS 111706 KX784674 KX784604 KX784747 - KY653382 KY653252 KY653308 Present study
CBS 114164 KX784677 KX784607 KX784750 - KY653383 KY653253 KY653309
US
Ca. ericae CBS 114458T KX784629 KX784571 KX784699 - KY653385 KY653255 KY653311 Lombard et al. (2016)
Ca. eucalypti CBS 125275T GQ267218 GQ267430 GQ267338 GQ267267 - GQ280633 GQ280755 Lombard et al. (2010c)
Ca. eucalypticola CBS 134847T KM395964 KM396051 KM395877 KM396134 - - - Alfenas et al. (2015)
Ca. expansa CBS 136247T KJ462914 KJ463029 KJ462798 KJ463146 - - - Lombard et al. (2015)
AN
Ca. floridana CBS 114692T KX784651 KX784588 KX784722 - - - - Lombard et al. (2016)
Ca. foliicola CBS 136641T KJ462916 KJ463031 KJ462800 KJ463148 - - - Lombard et al. (2015)
Ca. fujianensis CBS 127201T HQ285792 - HQ285820 HQ285806 - - - Chen et al. (2011)
Ca. glaeboicola CBS 134852T KM395966 KM396053 KM395879 KM396136 - - - Alfenas et al. (2015)
M
Ca. gordoniae CBS 112142T AF449449 GQ267381 GQ267309 DQ190708 KY653386 GQ280575 GQ280697
(2010c)
Ca. gracilipes CBS 111141T DQ190566 GQ267385 GQ267311 DQ190644 KY653387 GQ280579 GQ280701
(2010c)
D
Ca. gracilis CBS 111807T AF232858 GQ267407 GQ267323 DQ190646 KY653390 GQ280610 GQ280734
(2010c)
Ca. guangxiensis CBS 136092T KJ462919 KJ463034 KJ462803 KJ463151 - - - Lombard et al. (2015)
Ca. hainanensis
Ca. hawksworthii
Ca. henricotiae
CBS 136248T
CBS 111870T
CBS 138102T
-
AF333407
JX535308
KJ463036
GQ267386
KF815157
TE
KJ462805
FJ918558
-
KJ463152
DQ190649
KF815185
-
KY653391
-
-
GQ280580
JX535322
-
GQ280702
-
(2010c)
Gehesquiere et al. (2016)
CBS 133609T
EP
Ca. hodgesii KC491228 KC491222 KC491225 - - - - Alfenas et al. (2015)
Ca. hongkongensis CBS 114828T AY725622 AY725755 AY725717 AY725667 - GQ280581 GQ280703
(2010c)
T
Ca. humicola CBS 125251 GQ267233 GQ267445 GQ267353 GQ267282 - GQ280648 GQ280770 Lombard et al. (2010c)
C
Ca. hurae CBS 114551 AF333408 GQ267387 FJ918548 DQ190728 - GQ280583 GQ280705
(2010c,d)
Ca. ilicicola CBS 190.50T AY725631 AY725764 AY725726 AY725676 KM232307 GQ280605 GQ280727
AC
(2010c)
Ca. indonesiae CBS 112823T AY725623 AY725756 AY725718 AY725668 KY653394 GQ280585 GQ280707
(2010c)
Ca. indonesiana CBS 112936T KX784631 KX784573 KX784701 - - - - Lombard et al. (2016)
Ca. indusiata CBS 144.36T GQ267239 GQ267453 GQ267332 GQ267262 KY653396 GQ280658 GQ280780 Lombard et al. (2010c)
Ca. insularis CBS 114558T AF210861 GQ267389 FJ918556 FJ918526 KY653398 GQ280587 GQ280709
(2010b,c)
PT
Ca. kyotensis CBS 114525T AF348215 AY725750 AY725713 - - AF261741 - Crous et al. (2004c)
CBS 111324T
RI
Ca. lageniformis KX784632 KX784574 KX784702 - KY653400 KY653256 KY653312 Lombard et al. (2016)
Ca. lateralis CBS 136629T KJ462955 KJ463070 KJ462840 KJ463186 KY653402 KY653258 KY653314 Lombard et al. (2015)
Ca. lauri CBS 749.70T GQ267210 GQ267388 GQ267312 GQ267250 KY653403 GQ280584 GQ280706 Lombard et al. (2010c)
Ca. leguminum CBS 728.68T AF389837 GQ267391 FJ918547 DQ190654 - GQ280589 GQ280711
C
(2010c)
T
Ca. leucothoes CBS 109166 FJ918508 GQ267392 FJ918553 FJ918523 KY653404 GQ280590 GQ280712 Lombard et al. (2010b,c)
Ca. longiramosa CBS 116319T KX784635 KX784577 KX784705 - KY653406 KY653260 KY653316 Present study
US
Ca. machaerinae CBS 123183T KX784636 - KX784706 - KY653407 KY653261 KY653317 Lombard et al. (2016)
Ca. madagascariensis CBS 114572T DQ190572 GQ267394 GQ267314 DQ190658 KY653409 GQ280592 GQ280714
(2010c)
Crous et al. (1999, 2004); Lombard et
Ca. macroconidialis CBS 114880T AF232855 GQ267393 GQ267313 DQ190655 KY653410 GQ280591 GQ280713
AN
al. (2010c)
Ca. magnispora CBS 136249T KJ462956 KJ463071 KJ462841 KJ463187 - - - Lombard et al. (2015)
Ca. malesiana CBS 112752T AY725627 AY725760 AY725722 AY725672 - GQ280594 GQ280716
(2010c)
Ca. maranhensis CBS 134811T KM395948 KM396035 KM395861 KM396118 - - - Alfenas et al. (2015)
M
Ca. metrosideri CBS 133603T KC294313 KC294304 KC294310 KC294308 - - - Alfenas et al. (2013)
Ca. mexicana CBS 110918T AF210863 GQ267396 FJ972526 FJ972460 KY653412 GQ280596 GQ280718
(2010b,c)
CBS 136638T
D
Ca. microconidialis KJ462960 KJ463075 KJ462845 KJ463191 KY653411 KY653262 KY653318 Lombard et al. (2015)
Ca. monticola CBS 140645T KT964769 KT964771 KT964773 - - KT964775 KT983443 Crous et al. (2015e)
Ca. mossambicensis CBS 137243T - JX570722 JX570718 JX570726 - JX570730 - Crous et al. (2013b)
Ca. multilateralis
Ca. multinaviculata
Ca. multiphialidica
CBS 110932T
CBS 134858T
CBS 112678T
KX784642
KM395985
AY725628
KX784580
KM396072
AY725761
TE
KX784712
KM395898
AY725723
-
KM396155
AY725673
-
KY653413
KY653415
-
KY653263
GQ280597
-
KY653319
GQ280719
Alfenas et al. (2015)
(2010c)
EP
Ca. multiseptata CBS 112682T DQ190573 GQ267397 FJ918535 DQ190659 KY653416 GQ280598 GQ280720
(2010c,d)
Ca. naviculata CBS 101121T GQ267211 GQ267399 GQ267317 GQ267252 KM232309 GQ280600 GQ280722 Lombard et al. (2010c, 2015)
Ca. nemicola CBS 134837T KM395979 KM396066 KM395892 KM396149 - - - Alfenas et al. (2015)
Ca. nemoralis CBS 116249T KX784679 KX784609 KX784752 - - - - Present study
C
Ca. nymphaeae CBS 131802T JN984864 - KC555273 - - - - Xu et al. (2012)

Ca. octoramosa CBS 111423T KX784674 KX784603 KX784746 - KY653418 KY653265 KY653321 Present study
AC
Ca. orientalis CBS 125260T GQ267236 GQ267448 GQ267356 GQ267285 - GQ267651 GQ280773 Lombard et al. (2010c)
Ca. ovata CBS 111299T GQ267212 GQ267400 GQ267318 GQ267253 KY653419 GQ280601 GQ280723 Lombard et al. (2010c)
Ca. pacifica CBS 109063T GQ267213 AY725762 AY725724 GQ267255 - GQ280603 GQ280725
(2010c)
T
Ca. papillata CBS 136097 KJ462964 KJ463079 KJ462849 KJ463195 KY653422 KY653267 KY653323 Lombard et al. (2015)
Ca. paracolhounii CBS 114679T KX784644 KX784582 KX784714 - KY653423 KY653268 KY653324 Lombard et al. (2016)
PT
Ca. paraensis CBS 134669T KM395924 KM396011 KM395837 KM396094 - - - Alfenas et al. (2015)
CBS 136085T
RI
Ca. parakyotensis - KJ463081 KJ462851 KJ463197 - - - Lombard et al. (2015)
Ca. parva CBS 110798T KX784646 KX784583 KX784716 - KY653425 KY653270 KY653326 Lombard et al. (2016)
Ca. parvispora CBS 111465T DQ190607 KX784584 KX784717 - - - - Crous et al. (2006a); present study
Ca. pauciramosa CBS 138824T FJ918514 GQ267405 FJ918565 FJ918531 KY653426 GQ280608 GQ280730 Lombard et al. (2010b,c)
C
Ca. penicilloides CBS 174.55T AF333414 GQ267406 GQ267322 GQ267257 KY653427 GQ280609 GQ280731
(2010c)
T
Ca. pentaseptata CBS 133349 JX855942 - JX855958 JX855946 - JX855950 JX855954 Crous et al. (2012a)
US
Ca. piauiensis CBS 134850T KM395973 KM396060 KM395886 KM396143 - - - Alfenas et al. (2015)
Ca. pini CBS 123698T GQ267224 GQ267436 GQ267344 GQ267273 - GQ280639 GQ280761 Lombard et al. (2015)
Ca. polizzii CBS 123402T FJ972419 - FJ972488 FJ972438 - - - Lombard et al. (2010b,c)
Ca. plurilateralis CBS 111401T KX784648 KX784586 KX784719 - KY653430 KY653271 KY653327 Lombard et al. (2016)
AN
Ca. pluriramosa CBS 136976T KJ462995 KJ463112 KJ462882 KJ463228 KY653431 KY653272 KY653328 Lombard et al. (2015)
Ca. propaginicola CBS 134815T KM395953 KM396040 KM395866 KM396123 - - - Alfenas et al. (2015)
Ca. pseudobrassicae CBS 134662T KM395936 KM396023 KM395849 KM396106 - - - Alfenas et al. (2015)
Ca. pseudocerciana CBS 134824T KM395962 KM396049 KM395875 KM396132 - - - Alfenas et al. (2015)
Ca. pseudocolhounii CBS 127195T HQ285788 - HQ285816 HQ285802 - - - Chen et al. (2011)
M
Ca. pseudoecuadoriae CBS 111402T KX784652 KX784589 KX784723 - KY653432 KY653273 KY653329 Lombard et al. (2016)
Ca. pseudohodgesii CBS 134818T KM395905 KM395991 KM395817 KM396079 - - - Alfenas et al. (2015)
Ca. pseudokyotensis CBS 137332T KJ462994 KJ463111 KJ462881 KJ463227 - - - Lombard et al. (2015)
CBS 134845T
D
Ca. pseudometrosideri KM395909 KM395995 KM395821 KM396083 - - - Alfenas et al. (2015)
Ca. pseudomexicana CBS 130354T JN607281 - JN607496 JN607266 - - - Lombard et al. (2011)
Ca. pseudouxmalensis CBS 110924T KX784654 - KX784726 - KY653437 KY653276 KY653332 Lombard et al. (2016)
Ca. pseudonaviculata
Ca. pseudopteridis
Ca. pseudoreteaudii
Ca. pseudoscoparia
CBS 114417T
CBS 163.28T
CBS 123694T
CBS 125257T
GQ267214
-
FJ918504
GQ267229
TE
GQ267409
KM396076
GQ267411
GQ267441
GQ267325
KM395902
FJ918541
GQ267349
GQ267258
-
FJ918519
GQ267278
-
-
-
KY653434 GQ280612
-
GQ280614
GQ280644
GQ280734
-
GQ280736
GQ280766
Alfenas et al. (2015)
Lombard et al. (2010c,d)
EP
Kang et al. (2001); Lombard et al.
Ca. pseudospathiphylli CBS 109165T FJ918513 GQ267412 FJ918562 AF348241 KY653435 GQ280615 GQ280737
(2010c,d)
T
Ca. pseudospathulata CBS 134841 KM395983 KM396070 KM395896 KM396153 - - - Alfenas et al. (2015)
Ca. pseudovata CBS 134675T KM395946 KM396033 KM395859 KM396116 - - - Alfenas et al. (2015)
C
Ca. pteridis CBS 111793T DQ190578 GQ267413 FJ918563 DQ190679 KY653438 GQ280616 GQ280738
(2010c,d)
T
Ca. putriramosa CBS 111449 KX784656 KX784591 KX784728 - KY653440 KY653277 KY653333 Lombard et al. (2016)
AC

Ca. queenslandica CBS 112146T AF389835 GQ267415 FJ918543 FJ918521 - GQ280618 GQ280740
(2010c,d)
Ca. quinqueramosa CBS 134654T KM395942 KM396029 KM395855 KM396112 - - - Alfenas et al. (2015)
T Kang et al. (2001); Lombard et al.
Ca. reteaudii CBS 112144 AF389833 GQ267417 FJ918537 DQ190661 KY653443 GQ280620 GQ280742
(2010c,d)
T
Ca. robigophila CBS 134652 KM395937 KM396024 KM395850 KM396107 - - - Alfenas et al. (2015)
PT
Crous et al. (1999); Lombard et al.
Ca. rumohrae CBS 111431T AF232871 GQ267419 FJ918549 DQ190675 KY653445 GQ280622 GQ280744
(2010c)
RI
Ca. seminaria CBS 136632T KJ462998 KJ463115 KJ462885 KJ463231 KY653446 KY653279 KY653335 Lombard et al. (2015)
Ca. silvicola CBS 135237T KM395978 KM396065 KM395891 KM396148 - - - Alfenas et al. (2015)
Ca. spathulata CBS 555.92T GQ267215 GQ267426 FJ918554 GQ267261 KY653449 GQ280630 GQ280752 Lombard et al. (2010c,d)
C
Ca. spathiphylli CBS 114540 AF348214 GQ267424 GQ267330 AF348230 KY653447 GQ280627 GQ280749
(2010c)
Ca.
CBS 136081T
US
KJ463003 KJ463120 KJ462890 KJ463236 - - - Lombard et al. (2015)
sphaeropendunculata
Ca. stipitata CBS 112513T KX784661 KX784596 KX784734 - KY653450 KY653280 KY653336 Lombard et al. (2016)
Ca. sulawesiensis CBS 125277T GQ267222 GQ267434 GQ267342 GQ267271 - GQ280637 GQ280759 Lombard et al. (2010c)
Ca. sumatrensis CBS 112829T AY725649 AY725771 AY725733 AY725696 - GQ280654 GQ280776
(2010c)
AN
Ca. syzygiicola CBS 112831T KX784663 - KX784736 - - - - Lombard et al. (2016)
Ca. telluricola CBS 134664T KM395930 KM396017 KM395843 KM396100 - - - Alfenas et al. (2015)
Ca. tereticornis CBS 111301T KX784664 - KX784737 - - - - Lombard et al. (2016)
CBS 112151T
M
Ca. terrae-reginae FJ918506 GQ267451 FJ918545 FJ918522 - GQ280656 GQ280778
(2010c,d)
T
Ca. terrestris CBS 136642 KJ463004 KJ463121 KJ462891 KJ463237 - - - Lombard et al. (2015)
Ca. terricola CBS 116247T KX784665 - KX784738 - - - - Lombard et al. (2016)
Ca. tetraramosa CBS 136635T KJ463011 KJ463128 KJ462898 KJ463244 KY653453 KY653282 KY653338 Lombard et al. (2015)
D
Ca. trifurcata CBS 112753T KX784667 KX784598 KX784740 - KY653464 KY653292 KY653348 Lombard et al. (2016)
Ca. tropicalis CBS 116271T KX784669 KX784599 KX784742 - KY653455 KY653284 KY653340 Lombard et al. (2016)
Ca. turangicola
Ca. tucuruiensis
Ca. tunisiana
Ca. uniseptata
CBS 136077T
CBS 114755T
CBS 116265
CBS 130357T
CBS 413.67T
KJ463013
KX784670
KX784680
JN607276
GQ267208
-
KX784600
KX784610
-
GQ267379
TE KJ462900
KX784743
KX784753
JN607291
GQ267307
KJ463246
-
-
JN607261
GQ267248
-
-
-
KY653456
KY653457
KY653287
-
KY653285
KY653286
GQ280573
KY653343
-
KY653341
KY653342
GQ280695
Present study
Present study
EP
Ca. uxmalensis CBS 110925T KX784638 - KX784708 - KY653461 KY653288 KY653350 Lombard et al. (2016)
Ca. variabilis CBS 112691 GQ267240 GQ267458 GQ267335 GQ267264 KY653459 GQ280663 GQ280785 Lombard et al. (2010c)
Ca. venezuelana CBS 111052T KX784671 KX784601 KX784744 - - - - Lombard et al. (2016)
Ca. vietnamensis CBS 112152T KX784672 KX784602 KX784745 KY653463 KY653291 KY653347 Lombard et al. (2016)
C
Ca. zuluensis CBS 125268 FJ972414 GQ267459 FJ972483 FJ972433 - GQ280664 GQ280786 Lombard et al. (2010b,c)
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute. T ex-type strains.
2
tub2: partial β-tubulin gene; cmdA: partial calmodulin gene; tef1: partial translation elongation factor 1-alpha gene; his3: partial histone H3 gene; rpb2: RNA polymerase II second largest subunit; ITS: internal
AC
transcribed spacers and intervening 5.8S nrDNA; LSU: 28S large subunit RNA gene.
PT
Table 4. DNA barcodes of accepted Ceratocystis spp.
RI
ITS bt1 tef1 ms204 rpb2
T
Ce. adelpha CBS 115169 DQ520637 KJ601509 KJ601516 - - Van Wyk et al. (2006), Fourie et
C
al. (2015)
Ce. albifundus CBS 128992 DQ520638 EF070429 EF070400 - - Van Wyk et al. (2006, 2007)
US
Ce. atrox CBS 120518T NR_136981; EF070431 EF070403 - - Van Wyk et al. (2007)
EF070415
Ce. cacaofunesta CBS 115172T AY157953 KJ601512 KJ601519 - - Baker et al. (2003), Fourie et al.
(2015)
AN
Ce. caryae CBS 114716T NR_119530; EF070439 EF070412 - - Johnson et al. (2005), Van Wyk et
AY907035; al. (2007)
EF070424
Ce. cercfabiensis CBS 139654T KP727592; KP727618 KP727643 - - Liu et al. (2015a)
M
KP727593;
KP727594*
Ce. collisensis CBS 139679T KP727578 KP727614 KP727639 - - Liu et al. (2015a)
D
Ce. colombiana CBS 121792T NR_119483; AY177225 EU241493 KJ601567 KJ601603 Marin et al. (2003), Van Wyk et al.
AY177233 (2010), Fourie et al. (2015)
TE
Ce. corymbiicola CBS 127215T NR_119830; HM071914 HQ236453 - - Kamgan et al. (2012)
HM071902
Ce. curvata CBS 122603T NR_137018; FJ151448 FJ151470 KJ601570 KJ601606 Van Wyk et al. (2011b), Fourie et
EP
FJ151436 al. (2015)

Ce. diversiconidia CBS 123013T FJ151440 FJ151452 FJ151474 KJ601571 KJ601607 Van Wyk et al. (2011b), Fourie et
al. (2015)
Ce. ecuadoriana CBS 124020T FJ151432 FJ151444 FJ151466 KJ601573 KJ601609 Van Wyk et al. (2011b), Fourie et
al. (2015)
C
Ce. eucalypticola CBS 124016T FJ236723 FJ236783 FJ236753 KJ601576 KJ601612 Van Wyk et al. (2012), Fourie et
al. (2015)
AC
Ce. ficicola MAFF 625119T NR_119410 KY685077 KY316544 KY685080 KY685082 Kajitani & Masuya (2011)
Ce. fimbriata CBS 114723 KC493160 KF302689 KJ631109 KJ601578 KJ601614 Luchi et al. (2013), Fourie et al.
(2015)
Ce. fimbriatomima CBS 121786T EF190963 EF190951 EF190957 KJ601579 KJ601615 Van Wyk et al. (2009b), Fourie et
al. (2015)
Ce. harringtonii CBS 119.78 EF070418 EF070434 EF070406 - - Van Wyk et al. (2007)
PT
Ce. larium CBS 122512T NR_137016; EU881894 EU881900 - - Van Wyk et al. (2009a)
EU881906
RI
Ce. mangicola CBS 114721T AY953382 EF433307 EF433316 KJ601582 KJ601618 Van Wyk et al. (2005), Van Wyk
et al. (2011a), Fourie et al. (2015)
Ce. manginecans CBS 121659T NR_119532; EF433308 EF433317 KJ601584 KJ601620 Van Wyk et al. (2005, 2007),
AY953383*
C
Fourie et al. (2015)
Ce. mangivora CBS 128340T FJ200262 FJ200275 FJ200288 KJ601587 KJ601623 Van Wyk et al. (2011a), Fourie et
al. (2015)
US
Ce. neglecta CBS 121789T NR_137552; EU881898 EU881904 KJ601588 KJ601624 Rodas et al. (2008), Van Wyk et
EF127990 al. (2009a), Fourie et al. (2015)
Ce. obpyriformis CBS 122511T EU245003 EU244975 EU244935 - - Heath et al. (2009)
AN
Ce. papillata CBS 121793T NR_119486; AY233874 EU241484 KJ601590 KJ601626 Van Wyk et al. (2010), Fourie et
AY233867 al. (2015)
Ce. pirilliformis CBS 118128T NR_119452; DQ371653 AY528983 KJ601594 KJ601630 Barnes et al. (2003), Van Wyk et
AF427105 al. (2004, 2006), Fourie et al.
M
(2015)
Ce. platani CBS 115162PT DQ520630 EF070425 EF070396 KJ601592 KJ601628 Van Wyk et al. (2006, 2007),
Fourie et al. (2015)
D
Ce. polychroma CBS 115778T AY528970 AY528966 AY528978 - - Van Wyk et al. (2004)
Ce. polyconidia CBS 122289T EU245006TE EU244978 EU244938 - - Heath et al. (2009)
Ce. smalleyi CBS 114724T NR_119529; EF070436 EF070408 - - Johnson et al. (2005), Van Wyk et
AY907030; al. (2007)
EF070420
Ce. tanganyicensis CBS 122293T NR_137555; EU244971 EU244931 - - Heath et al. (2009)
EP
EU244999
Ce. thulamelensis CBS 131284T KC691456 KC691480 KC691504 - - Mbenoun et al. (2014)
T
Ce. tsitsikammensis CBS 121018 NR_119633; EF408569 EF408576 - - Kamgan et al. (2008)
EF408555
C
Ce. variospora CBS 114715PT AY907037; EF070437 EF070409 Johnson et al. (2005), Van Wyk et
EF070421 al. (2007a)
Ce. zambeziensis CBS 131280T KC691458 KC691482 KC691506 - - Mbenoun et al. (2014)
AC
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; MAFF: Ministry of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki, Japan. T
and PT
indicate ex-type and ex-paratype, respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; bt1: partial β-tubulin gene; tef1: partial translation elongation factor 1-alpha gene, ms204:
partial guanine nucleotide-binding protein subunit beta-like protein gene; rpb2: partial RNA polymerase II second largest subunit gene. *Multiple ITS types
reported.
PT
Table 5. DNA barcodes of accepted Cladosporium spp.
RI
Species Isolates1 GenBank accession References
numbers2
ITS act tef1
C
Cl. acalyphae CBS 125982T HM147994 HM148481 HM148235 Bensch et al. (2010)
US
Cl. aciculare CBS 140488T KT600411 KT600607 KT600509 Bensch et al. (2015)
Cl. aggregatocicatricatum CBS 140493T KT600448 KT600645 KT600547 Bensch et al. (2015)
AN
Cl. alboflavescens CBS 140690T LN834420 LN834604 LN834516 Sandoval et al. (2016)
Cl. allicinum CBS 121624NT EF679350 EF679502 EF679425 Schubert et al. (2007)
M
Cl. allii CBS 101.81RS JN906977 JN906996 JN906983 Bensch et al. (2012)
D
Cl. angulosum CBS 140692T LN834425 LN834609 LN834521 Sandoval et al. (2016)
CBS 140479T
Cl. angustiherbarum
TE KT600378 KT600574 KT600475 Bensch et al. (2015)
Cl. angustisporum CBS 125983T HM147995 HM148482 HM148236 Bensch et al. (2010)
CBS 140480T
EP
Cl. angustiterminale KT600379 KT600575 KT600476 Bensch et al. (2015)
Cl. antarcticum CBS 690.92T EF679334 EF679484 EF679405 Schubert et al. (2007)
C
Cl. antropophilum CBS 140685T LN834437 LN834621 LN834533 Sandoval et al. (2016)
AC
Cl. aphidis CBS 132182ET JN906978 JN906998 JN906985 Bensch et al. (2012)
Cl. arthropodii CBS 124043ET JN906979 JN906998 JN906985 Bensch et al. (2012)
Cl. asperulatum CBS 126340T HM147998 HM148485 HM148239 Bensch et al. (2010)
PT
Cl. australiense CBS 125984T HM147999 HM148486 HM148240 Bensch et al. (2010)
RI
Cl. austroafricanum CBS 140481T KT600381 KT600577 KT600478 Bensch et al. (2015)
Cl. austrohemisphaericum CBS 140482T KT600382 KT600578 KT600479 Bensch et al. (2015)
C
Cl. basiinflatum CBS 822.84T HM148000 HM148487 HM148241 Bensch et al. (2010)
US
Cl. chalastosporoides CBS 125985T HM148001 HM148488 HM148242 Bensch et al. (2010)
Cl. chasmanthicola CPC 21300T KY646221 KY646224 KY646227 Present study
AN
Cl. chubutense CBS 124457T FJ936158 FJ936165 FJ936161 Schubert et al. (2009)
Cl. cladosporioides CBS 112388NT HM148003 HM148490 HM148244 Bensch et al. (2010)
M
Cl. colocasiae CBS 386.64T HM148067 HM148555 HM148310 Bensch et al. (2010)
D
Cl. colombiae CBS 274.80BT FJ936159 FJ936166 FJ936163 Schubert et al. (2009)
Cl. crousii
TE
CBS 140686T LN834431 LN834615 LN834527 Sandoval et al. (2016)
Cl. cucumerinum CBS 171.52ET HM148072 HM148561 HM148316 Bensch et al. (2010)
EP
Cl. cycadicola CPC 17251T KJ869122 KJ869227 KJ869236 Crous et al. (2014b)
Cl. delicatulum CBS 126344RS HM148081 HM148570 HM148325 Bensch et al. (2010)
C
Cl. dominicanum CBS 119415T DQ780353 EF101368 JN906986 Zalar et al. (2007),
Bensch et al. (2012)
AC
Cl. echinulatum CBS 123191RS JN906980 JN906999 JN906987 Bensch et al. (2012)
Cl. exasperatum CBS 125986T HM148090 HM148579 HM148334 Bensch et al. (2010)
PT
Cl. exile CBS 125987T HM148091 HM148580 HM148335 Bensch et al. (2010)
RI
Cl. flabelliforme CBS 126345T HM148092 HM148581 HM148336 Bensch et al. (2010)
Cl. flavovirens CBS 140462T LN834440 LN834624 LN834536 Sandoval et al. (2016)
C
Cl. floccosum CBS 140463T LN834416 LN834600 LN834512 Sandoval et al. (2016)
US
Cl. funiculosum CBS 122129T HM148094 HM148583 HM148338 Bensch et al. (2010)
Cl. fusiforme CBS 119414T DQ780388 EF101372 JN906988 Zalar et al. (2007),
AN
Cl. gamsianum CBS 125989T HM148095 HM148584 HM148339 Bensch et al. (2010)
M
Cl. globisporum CBS 812.96T HM148096 HM148585 HM148340 Bensch et al. (2010)
Cl. grevilleae CBS 114271T JF770450 JF770473 JF770472 Crous et al. (2011b)
D
Cl. halotolerans CBS 119416T DQ780364 EF101397 JN906989 Zalar et al. (2007),
TE Bensch et al. (2012)
Cl. herbaroides CBS 121626T EF679357 EF679509 EF679432 Schubert et al. (2007)
EP
Cl. herbarum CBS 121621ET EF679363 EF679516 EF679440 Schubert et al. (2007)
Cl. hillianum CBS 125988T HM148097 HM148586 HM148341 Bensch et al. (2010)
C
Cl. inversicolor CBS 401.80T HM148101 HM148590 HM148345 Bensch et al. (2010)
AC
Cl. ipereniae CBS 140483T KT600394 KT600589 KT600491 Bensch et al. (2015)
Cl. iranicum CBS 126346T HM148110 HM148599 HM148354 Bensch et al. (2010)
PT
Cl. iridis CBS 138.40ET EF679370 EF679523 EF679447 Schubert et al. (2007)
RI
Cl. kenpeggii CPC 19248T KY646222 KY646225 KY646228 Present study
Cl. langeronii CBS 189.54NT DQ780379 EF101357 JN906990 Zalar et al. (2007),
C
US
Cl. licheniphilum CBS 125990ET HM148111 HM148600 HM148355 Bensch et al. (2010)
Cl. limoniforme CBS 140484T KT600397 KT600592 KT600494 Bensch et al. (2015)
AN
Cl. longicatenatum CBS 140485T KT600403 KT600598 KT600500 Bensch et al. (2015)
Cl. longissimum CBS 140485T DQ780352 EF101385 EU570259 Zalar et al. (2007),
M
Dugan et al. (2008)
Cl. lycoperdinum CBS 574.78CRS HM148115 HM148604 HM148359 Bensch et al. (2010)
D
Cl. macrocarpum CBS 121623NT
TE EF679375 EF679529 EF679453 Schubert et al. (2007)
Cl. montecillanum CBS 140486T KT600406 KT600602 KT600504 Bensch et al. (2015)
Cl. myrtacearum CBS 126350ET HM148117 HM148606 HM148361 Bensch et al. (2010)
EP
Cl. ossifragi CBS 842.91ET EF679381 EF679535 EF679459 Schubert et al. (2007)
Cl. oxysporum CBS 125991RS HM148118 HM148607 HM148362 Bensch et al. (2010)
C
Cl. paracladosporioides CBS 171.54T HM148120 HM148609 HM148364 Bensch et al. (2010)
AC
Cl. parapenidielloides CBS 140487T KT600410 KT600606 KT600508 Bensch et al. (2015)
Cl. penidielloides CBS 140489T KT600412 KT600608 KT600510 Bensch et al. (2015)
PT
Cl. perangustum CBS 125996T HM148121 HM148610 HM148365 Bensch et al. (2010)
RI
Cl. phaenocomae CBS 128769T JF499837 JF499881 JF499875 Crous & Groenewald
(2011)
C
Cl. phlei CBS 358.69ET JN906981 JN907000 JN906991 Bensch et al. (2012)
US
Cl. phyllactiniicola CBS 126352T HM148150 HM148639 HM148394 Bensch et al. (2010)
Cl. phyllophilum CBS 125992ET HM148154 HM148643 HM148398 Bensch et al. (2010)
AN
Cl. pini-ponderosae CBS 124456T FJ936160 FJ936167 FJ936164 Schubert et al. (2009)
Cl. pseudiridis CBS 116463T EF679383 EF679537 EF679461 Schubert et al. (2007)
M
Cl. pseudochalastoporoides CBS 140490T KT600415 KT600611 KT600513 Bensch et al. (2015)
Cl. pseudocladosporioides CBS 125993T HM148158 HM148647 HM148402 Bensch et al. (2010)
D
Cl. psychrotolerans CBS 119412T DQ780386 EF101365 JN906992 Zalar et al. (2007),
TE Bensch et al. (2012)
Cl. puyae CBS 274.80AT KT600418 KT600614 KT600516 Bensch et al. (2015)
EP
Cl. ramotenellum CBS 121628T EF679384 EF679538 EF679462 Schubert et al. (2007)
Cl. rectoides CBS 125994T HM148193 HM148683 HM148438 Bensch et al. (2010)
C
Cl. rhusicola CBS 140492T KT600440 KT600637 KT600539 Bensch et al. (2015)
AC
Cl. ruguloflabelliforme CBS 140494T KT600458 KT600655 KT600557 Bensch et al. (2015)
Cl. rugulovarians CBS 140495T KT600459 KT600656 KT600558 Bensch et al. (2015)
PT
Cl. salinae CBS 119413T DQ780374 EF101390 JN906993 Zalar et al. (2007),
RI
Cl. scabrellum CBS 126358T HM148195 HM148685 HM148440 Bensch et al. (2010)
C
Cl. silenes CBS 109082T EF679354 EF679506 EF679429 Schubert et al. (2007)
US
Cl. sinuosum CBS 121629T EF679386 EF679540 EF679464 Schubert et al. (2007)
Cl. soldanellae CBS 132186NT JN906982 JN907001 JN906994 Bensch et al. (2012)
AN
Cl. sphaerospermum CBS 193.54NT DQ780343 EF101380 EU570261 Zalar et al. (2007),
Dugan et al. (2008)
CBS 119907T
M
Cl. spinulosum EF679388 EF679542 EF679466 Schubert et al. (2007)
Cl. subcinereum CBS 140465T LN834433 LN834529 LN834617 Sandoval et al. (2016)
D
Cl. subinflatum CBS 121630T
TE EF679389 EF679543 EF679467 Schubert et al. (2007)
Cl. subtilissimum CBS 113754T EF679397 EF679551 EF679475 Schubert et al. (2007)
Cl. subuliforme CBS 126500T HM148196 HM148686 HM148441 Bensch et al. (2010)
EP
Cl. succulentum CBS 140466T LN834434 LN834618 LN834530 Sandoval et al. (2016)
Cl. tenellum CBS 121634T EF679401 EF679555 EF679479 Schubert et al. (2007)
C
Cl. tenuissimum CBS 125995ET HM148197 HM148687 HM148442 Bensch et al. (2010)
AC
Cl. tuberosum CBS 140693T LN834417 LN834601 LN834513 Sandoval et al. (2016)
Cl. uredinicola ATCC 46649 AY251071 HM148712 HM148467 Braun et al. (2003),
PT
Cl. variabile CBS 121635ET EF679402 EF679556 EF679480 Schubert et al. (2007)
RI
Cl. varians CBS 126362T HM148224 HM148715 HM148470 Bensch et al. (2010)
Cl. velox CBS 119417T DQ780361 EF101388 JN906995 Zalar et al. (2007),
C
US
Cl. verrucocladosporioides CBS 126363T HM148226 HM148717 HM148472 Bensch et al. (2010)
Cl. versiforme CBS 140491T KT600417 KT600613 KT600515 Bensch et al. (2015)
AN
Cl. welwitschiicola CPC 18648T KY646223 KY646226 KY646229 Present study
Cl. xanthochromaticum CBS 140691T LN834415 LN834599 LN834511 Sandoval et al. (2016)
M
Cl. xylophilum CBS 125997T HM148230 HM148721 HM148476 Bensch et al. (2010)
1
ATCC: American Type Culture Collection, Virginia, USA; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands;
D
CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute. T, ET, NT and RS indicate ex-type, ex-
epitype, ex-neotype and reference strains, respectively.
2
TE
ITS: internal transcribed spacers and intervening 5.8S nrDNA; act: partial actin gene; tef1: partial translation elongation factor 1-
alpha gene.
C EP
AC
PT
Table 6. DNA barcodes of accepted Colletotrichum spp. except for species in the C. graminicola and caudatum complexes.
RI
ITS gapdh chs-1 his3 act tub2 cal gs sod2 ApMat
C
Col. abscissum COAD 1877T KP843126 KP843129 KP843132 KP843138 KP843141 KP843135 - - - - Crous et al.
(2015d)
US
Col. acerbum CBS 128530T JQ948459 JQ948790 JQ949120 JQ949450 JQ949780 JQ950110 - - - - Damm et al.
(2012b)
AN
Col. acutatum CBS 112996T JQ005776 JQ948677 JQ005797 JQ005818 JQ005839 JQ005860 - - - - Damm et al.
(2012b)
Col. aenigma ICMP 18608T JX010244 JX010044 JX009774 - JX009443 JX010389 JX009683 JX010078 JX010311 KM360143 Weir et al.
M
(2012)
Col. ICMP 17673T JX010176 JX009930 JX009799 - JX009483 JX010392 JX009721 JX010081 JX010314 - Weir et al.
D
aeschynomenes (2012)
Col. agaves CBS 118190 DQ286221 - - - - - - - - - Farr et al. (2006)
Col. alatae TE
ICMP 17919T JX010190 JX009990 JX009837 - JX009471 JX010383 JX009738 JX010065 JX010305 KC888932 Weir et al.
(2012)
EP
Col. alienum ICMP 12071T JX010251 JX010028 JX009882 - JX009572 JX010411 JX009654 JX010101 JX010333 KM360144 Weir et al.
(2012)
Col. americae- CBS 136232T KM105224 KM105579 KM105294 KM105364 KM105434 KM105504 - - - - Damm et al.
C
borealis (2014)
AC
Col. annellatum CBS 129826T JQ005222 JQ005309 JQ005396 JQ005483 JQ005570 JQ005656 JQ005743 - - - Damm et al.
(2012a)
Col. anthrisci CBS 125334T GU227845 GU228237 GU228335 GU228041 GU227943 GU228139 - - - - Damm et al.
(2009)
PT
Col. antirrhinicola CBS 102189T KM105180 KM105531 KM105250 KM105320 KM105390 KM105460 - - - - Damm et al.
RI
(2014)
Col. aotearoa ICMP 18537T JX010205 JX010005 JX009853 - JX009564 JX010420 JX009611 JX010113 JX010345 KC888930 Weir et al.
(2012), Sharma
C
et al. (2015)
US
Col. aracearum CGMCC KX853167 KX893586 KX893578 KX893582 Hou et al.
3.14983 T (2016),
Col. arxii CBS 132511T KF687716 KF687843 KF687780 KF687858 KF687802 KF687881 KF687819 KF687756 - - Liu et al. (2014)
AN
Col. asianum ICMP 18580T FJ972612 JX010053 JX009867 - JX009584 JX010406 FJ917506 JX010096 JX010328 FR718814 Prihastuti et al.
(2009), Silva et
al. (2012), Weir
M
et al. (2012)
Col. australe CBS 116478T JQ948455 JQ948786 JQ949116 JQ949446 JQ949776 JQ950106 - - - - Damm et al.
D
(2012b)
Col. beeveri CBS 128527T JQ005171 JQ005258 JQ005345 JQ005432 JQ005519 JQ005605 JQ005692 - - - Damm et al.
Col. bidentis
TE
COAD 1020T KF178481 KF178506 KF178530 KF178554 KF178578 KF178602 - KF178627 - -
(2012a)
Damm et al.
(2013)
EP
Col. bletillum CGMCC JX625178 KC843506 - - KC843542 JX625207 - - - - Tao et al. (2013)
3.15117T
C
Col. boninense CBS 123755T JQ005153 JQ005240 JQ005327 JQ005414 JQ005501 JQ005588 JQ005674 - - - Damm et al.
(2012a)
AC
Col. brasiliense CBS 128501T JQ005235 JQ005322 JQ005409 JQ005496 JQ005583 JQ005669 JQ005756 - - - Damm et al.
(2012a)
Col. brassicola CBS 101059T JQ005172 JQ005259 JQ005346 JQ005433 JQ005520 JQ005606 JQ005693 - - - Damm et al.
PT
(2012a)
RI
Col. brevisporum BCC 38876T JN050238 JN050227 KF687760 - JN050216 JN050244 - - - - Noireung et al.
(2012)
C
Col. brisbanense CBS 292.67T JQ948291 JQ948621 JQ948952 JQ949282 JQ949612 JQ949942 - - - - Damm et al.
(2012b)
US
Col. bryoniicola CBS 109849T KM105181 KM105532 KM105251 KM105321 KM105391 KM105461 - - - - Damm et al.
(2014)
AN
Col. cairnsense BRIP 63642T KU923672 KU923704 KU923710 KU923722 KU923716 KU923688 - - - - De Silva et al.
(2017)
Col. camelliae CGMCC KJ955081 KJ954782 - - KJ954363 KJ955230 KJ954634 KJ954932 - KJ954497 Liu et al. (2015b)
M
3.14925T
Col. camelliae- CGMCC3.1811KX853165 KX893584 KX893576 KX893580 Hou et al. (2016)

japonicae 8T
D
Col. carthami SAPA100011T AB696998 - - - - AB696992 - - - - Damm et al.
TE (2012b),
Uematsu et al.
(2012)
EP
Col. MFLUCC 15- KP683152 KP852469 KP852449 - KP683093 KP852490 - - - - Jayawardena et
changpingense 0022 al. (2016a)
Col. chlorophyti IMI 103806T GU227894 GU228286 GU228384 GU228090 GU227992 GU228188 - - - - Damm et al.
C
(2009)
AC
Col. chrysanthemi SAPA100010 AB696999 AB696993 - - - - Uematsu et al.

(2012), Damm et
al. (2012b)
Col. circinans CBS 221.81T GU227855 GU228247 GU228345 GU228051 GU227953 GU228149 - - - - Damm et al.
PT
(2009)
RI
Col. citri CBS 134233T KC293581 KC293741 - - KC293621 KC293661 KC293701 KC293781 - - Huang et al.
(2013)
C
Col. citricola CBS 134228T KC293576 KC293736 KC293792 - KC293616 KC293656 KC293696 KC293776 - - Huang et al.
(2013)
US
Col. clidemiae ICMP 18658T JX010265 JX009989 JX009877 - JX009537 JX010438 JX009645 JX010129 JX010356 KC888929 Weir et al.
(2012)
AN
Col. cliviae CBS 125375T GQ485607 GQ856756 GQ856722 JX560963 GQ856777 GQ849440 - - - - Yang et al.
(2009), Cannon
et al. (2012)
M
Col. coccodes CBS 369.75T HM171679 HM171673 JX546681 JX546779 HM171667 JX546873 - - - - Liu et al. (2011,
2013a)
Col. colombiense CBS 129818T JQ005174 JQ005261 JQ005348 JQ005435 JQ005522 JQ005608 JQ005695 - - - Damm et al.
D
(2012a)
Col. conoides
Col. constrictum
CGMCC
3.17615T TE
KP890168 KP890162 KP890156 KP890144 KP890174 KP890150
CBS 128504T JQ005238 JQ005325 JQ005412 JQ005499 JQ005586 JQ005672 JQ005759 - - -

Diao et al. 2017
Damm et al.
EP
(2012a)
Col.cordylinicola ICMP 18579T JX010226 JX009975 JX009864 - HM470235 JX010440 HM470238 JX010122 JX010361 JQ899274 Weir et al.
(2012)
C
Col. cosmi CBS 853.73T JQ948274 JQ948604 JQ948935 JQ949265 JQ949595 JQ949925 - - - - Damm et al.
AC
(2012b)
Col. costaricense CBS 330.75T JQ948180 JQ948510 JQ948841 JQ949171 JQ949501 JQ949831 - - - - Damm et al.
(2012b)
PT
Col. curcumae IMI 288937T GU227893 GU228285 GU228383 GU228089 GU227991 GU228187 - - - - Damm et al.
RI
(2009)
Col. cuscutae IMI 304802T JQ948195 JQ948525 JQ948856 JQ949186 JQ949516 JQ949846 - - - - Damm et al.
(2012b)
C
Col. cymbidiicola IMI 347923T JQ005166 JQ005253 JQ005340 JQ005427 JQ005514 JQ005600 JQ005687 - - - Damm et al.
US
(2012a)
Col. dacrycarpi CBS 130241T JQ005236 JQ005323 JQ005410 JQ005497 JQ005584 JQ005670 JQ005757 - - - Damm et al.
(2012a)
AN
Col. dematium CBS 125.25T GU227819 GU228211 GU228309 GU228015 GU227917 GU228113 - - - - Damm et al.
(2009)
M
Col. destructivum CBS 136228T KM105207 KM105561 KM105277 KM105347 KM105417 KM105487 - - - - Damm et al.
(2014)
Col. CBS 118199T DQ286209, JX546707 JX519230 JX546756 JX519238 JX519247 - - - - Cannon et al.
D
dracaenophilum JX519222 (2012), Farr et al.
(2006)
Col. endophytica MFLUCC 13– KC633854 KC832854 -

0418T
TE - KF306258 - KC810018 - - - Manamgoda et
al. (2013)
EP
Col. euphorbiae CBS 134725T KF777146 KF777131 KF777128 KF777134 KF777125 KF777247 - - - - Crous et al.
(2013b)
Col. excelsum- CGMCC HM751815 KC843502 - - KC843548 JX625211 - - - - Tao et al. (2013)
C
altitudum 3.15130T
AC
Col. fioriniae CBS 128517T JQ948292 JQ948622 JQ948953 JQ949283 JQ949613 JQ949943 - - - - Damm et al.
(2012b)
Col. fructi CBS 346.37T GU227844 GU228236 GU228334 GU228040 GU227942 GU228138 - - - - Damm et al.
(2009)
PT
Col. fructicola ICMP 18581T JX010165 JX010033 JX009866 - FJ907426 JX010405 FJ917508 JX010095 JX010327 JQ807838 Weir et al.
RI
(2012)
Col. fructivorum CBS 133125T JX145145 - - - - JX145196 - - - JX145300 Doyle et al.

(2013)
C
Col. fuscum CBS 133701T KM105174 KM105524 KM105244 KM105314 KM105384 KM105454 - - - - Damm et al.
US
(2014)
Col. fusiforme MFLUCC 12– KT290266 KT290255 KT290253 - KT290251 KT290256 - - - - Ariyawansa et al.
0437T (2015a)
AN
Col. gigasporum CBS 133266T AM982797, KF687822 KF687761 KF687844 - FN557442, - - - - Rakotoniriana et
KF687715 KF687866 al. (2013), Liu et
al. (2014)
M
Col. CBS 112999T JQ005152 JQ005239 JQ005326 JQ005413 JQ005500 JQ005587 JQ005673 JX010085 JX010365 JQ807843 Weir et al.
gloeosporioides (2012)
D
Col. godetiae CBS 133.44T JQ948402 JQ948733 JQ949063 JQ949393 JQ949723 JQ950053 - - - - Damm et al.
(2012b)
Col. grevilleae
Col. grossum
TE
CBS 132879T KC297078 KC297010 KC296987 KC297056 KC296941 KC297102 KC296963 KC297033 -
CGMCC3.1761KP890165 KP890159 KP890153 KP890141 KP890171 KP890147

- Liu et al. (2013b)
Diao et al.
EP
4T (2017)
Col. guajavae IMI 350839T JQ948270 JQ948600 JQ948931 JQ949261 JQ949591 JQ949921 - - - - Damm et al.
(2012b)
C
Col. guizhouensis CGMCC JX625158 KC843507 - - KC843536 JX625185 - - - - Tao et al. (2013)
AC
3.15112T
Col. hebeiense MFLUCC13– KF156863 KF377495 KF289008 - KF377532 KF288975 - - - - Yan et al. (2015)
0726T
PT
Col. CBS 130642T JQ400005 JQ400012 JQ399998 - JQ399991 JQ400019 KJ781319 - - - Yang et al.
RI
hemerocallidis (2012)
Col. henanense CGMCC KJ955109 KJ954810 - - KM023257 KJ955257 KJ954662 KJ954960 - KJ954524 Liu et al. (2015b)
3.17354T
C
Col. higginsianum IMI 349061T KM105184 KM105535 KM105254 KM105324 KM105394 KM105464 - - - - Damm et al.
US
(2014)
Col. hippeastri CBS 125376T JQ005231 JQ005318 JQ005405 JQ005492 JQ005579 JQ005665 JQ005752 - - - Damm et al.
(2012a)
AN
Col. horii ICMP 10492T GQ329690 GQ329681 JX009752 - JX009438 JX010450 JX009604 JX010137 JX010370 JQ807840 Weir et al.
(2012)
M
Col. hsienjenchang MAFF 243051 AB738855 - AB738846 AB738847 AB738845 - - - - - Sato et al. (2012)
Col. MFLUCC 12– KT290264 KT290263 KT290262 - KT290260 KT290261 - - - - Ariyawansa et al.
hymenocallidicola 0531T (2015a)
D
Col. incanum ATCC 64682T KC110789 KC110807 - KC110798 KC110825 KC110816 - - - - Yang et al.
TE
Col. indonesiense CBS 127551T JQ948288 JQ948618 JQ948949 JQ949279 JQ949609 JQ949939 - - - -
(2014)
Damm et al.
(2012b)
EP
Col. insertae MFLU 15– KX618686 KX618684 KX618683 KX618682 KX618685 Hyde et al.
1895T (2016)
C
Col. jiangxiense CGMCC KJ955201 KJ954902 - - KJ954471 KJ955348 KJ954752 KJ955051 - KJ954607 Liu et al. (2015b)
3.17363T
AC
Col. johnstonii CBS 128532T JQ948444 JQ948775 JQ949105 JQ949435 JQ949765 JQ950095 - - - - Damm et al.
(2012b)
Col. kahawae ICMP 17816T JX010231 JX010012 JX009813 - JX009452 JX010444 JX009642 JX010130 JX010350 JQ894579 Weir et al.
PT
subsp. kahawae (2012)
RI
Col. kahawae ICMP 18539T JX010230 JX009966 JX009800 JX009523 JX010434 JX009635 JX010132 JX010346 Weir et al.
subsp. ciggaro (2012)
C
Col. karstii CBS 132134T HM585409 HM585391 HM582023 HM581995 HM585428 HM582013 - - - Yang et al.
(2009)
US
Col. kinghornii CBS 198.35T JQ948454 JQ948785 JQ949115 JQ949445 JQ949775 JQ950105 - - - - Damm et al.
2012b
AN
Col. lacticiphilum CBS 112989T JQ948289 JQ948619 JQ948950 JQ949280 JQ949610 JQ949940 - - - - Damm et al.
(2012b)
Col. ledebouriae CBS 141284T KX228254 - - KX228365 KX228357 - - - - - Crous et al.
M
(2016c)
Col. lentis CBS 127604T JQ005766 KM105597 JQ005787 JQ005808 JQ005829 JQ005850 - - - - Damm et al.
(2014)
D
Col. liaoningense CGMCC3.1761KP890104 KP890135 KP890127 KP890097 KP890111 KP890119 Diao et al.
Col. lilii
6T
CBS 109214
TE
GU227810 GU228202 GU228300 GU228006 GU227908 GU228104 - - - -
(2017)
Damm et al.
(2009)
EP
Col. limetticola CBS 114.14T JQ948193 JQ948523 JQ948854 JQ949184 JQ949514 JQ949844 - - - - Damm et al.
(2012b)
C
Col. CBS 144.31T JQ005779 JX546712 JQ005800 JQ005821 JQ005842 JQ005863 - KF178643 - - Damm et al.
lindemuthianum (2013), Liu et al.
AC
(2013a)
Col. lineola CBS 125337T GU227829 GU228221 GU228319 GU228025 GU227927 GU228123 - - - - Damm et al.
(2009)
PT
Col. lini CBS 172.51T JQ005765 KM105581 JQ005786 JQ005807 JQ005828 JQ005849 - - - - Damm et al.
RI
(2014)
Col. liriopes CBS 119444T GU227804 GU228196 GU228294 GU228000 GU227902 GU228098 - - - - Damm et al.
(2009)
C
Col. lupini CBS 109225T JQ948155 JQ948485 JQ948816 JQ949146 JQ949476 JQ949806 - - - - Damm et al.
US
(2012b)
Col. magnisporum CBS 398.84T KF687718 KF687842 KF687782 KF687865 KF687803 KF687882 - KF687742 - - Liu et al. (2014)
AN
Col. malvarum CBS 521.97T KF178480 KF178504 KF178529 KF178553 KF178577 KF178601 - KF178626 - - Damm et al.
(2013)
Col. melonis CBS 159.84T JQ948194 JQ948524 JQ948855 JQ949185 JQ949515 JQ949845 - - - - Damm et al.
M
(2012b)
Col. menispermi MFLU 14– KU242357 KU242356 KU242355 - KU242353 KU242354 - - - - Li et al. (2016)
0625HT
D
Col. metake MAFF 244029 AB738859 (Sequences availabe at http://www.gene.affrc.go.jp/databases-micro_search_en.php) Sato et al. (2012)
Col. musae
TE
ICMP 19119T JX010146 JX010050 JX009896 - JX009433 HQ596280 JX009742 JX010103 JX010335 KC888926 Weir et al.
(2012)
EP
Col. CBS 139918T KR476747 KR476791 - KR476792 KR476790 KR476797 - - - - Crous et al.
neosansevieriae (2015d)
Col. nigrum CBS 169.49T JX546838 JX546742 JX546693 JX546791 JX546646 JX546885 - - - - Liu et al. (2013a)
C
Col. novae- CBS 128505T JQ005228 JQ005315 JQ005402 JQ005489 JQ005576 JQ005662 JQ005749 - - - Damm et al.
AC
zelandiae (2012a)
Col. nupharicola ICMP 18187T JX010187 JX009972 JX009835 - JX009437 JX010398 JX009663 JX010088 JX010320 JX145319 Weir et al.
(2012), Doyle et
al. (2013)
PT
Col. nymphaeae CBS 515.78T JQ948197 JQ948527 JQ948858 JQ949188 JQ949518 JQ949848 - - - - Damm et al.
RI
(2012b)
Col. ocimi CBS 298.94T KM105222 KM105577 KM105292 KM105362 KM105432 KM105502 - - - - Damm et al.
(2014)
C
Col. oncidii CBS 129828T JQ005169 JQ005256 JQ005343 JQ005430 JQ005517 JQ005603 JQ005690 - - - Damm et al.
US
(2012a)
Col. orbiculare CBS 570.97T KF178466 KF178490 KF178515 KF178539 KF178563 KF178587 - KF178611 - - Damm et al.
(2013)
AN
Col. CBS 632.80T JQ948151 JQ948481 JQ948812 JQ949142 JQ949472 JQ949802 - - - - Damm et al.
orchidophilum (2012b)
M
Col. panacicola C08048 GU935867 GU935847 - - GU944757 - - GU935807 - - Choi et al.
(2011)
Col. paranaense CBS 134729T KC204992 KC205026 KC205043 KC205004 KC205077 KC205060 - - - - Bragança et al.
D
(2016)
Col. parsonsiae
Col. paxtonii IMI 165753T

TE
CBS 128525T JQ005233 JQ005320 JQ005407 JQ005494 JQ005581 JQ005667 JQ005754 -
JQ948285 JQ948615 JQ948946 JQ949276 JQ949606 JQ949936 - -

-
-
-
-
Damm et al.
(2012a)
Damm et al.
EP
(2012b)
Col. petchii CBS 378.94T JQ005223 JQ005310 JQ005397 JQ005484 JQ005571 JQ005657 JQ005744 - - - Damm et al.
(2012b)
C
Col. phormii CBS 118194T JQ948446 JQ948777 JQ949107 JQ949437 JQ949767 JQ950097 - - - - Damm et al.
AC
(2012b)
Col. phyllanthi CBS 175.67T JQ005221 JQ005308 JQ005395 JQ005482 JQ005569 JQ005655 JQ005742 - - - Damm et al.
(2012b)
PT
Col. pisicola CBS 724.97T KM105172 KM105522 KM105242 KM105312 KM105382 KM105452 - - - - Damm et al.
RI
(2014)
Col. proteae CBS 132882T KC297079 KC297009 KC296986 KC297045 KC296940 KC297101 KC296960 - KC297032 - Liu et al. (2013b)
C
Col. CBS 436.77T JQ948480 JQ948811 JQ949141 JQ949471 JQ949801 JQ950131 - - - - Damm et al.
pseudoacutatum (2012)
US
Col. pseudomajus CBS 571.88T KF687722 KF687826 KF687779 KF687864 KF687801 KF687883 KF687807 KF687744 - - Liu et al. (2014)
Col. psidii ICMP 19120 JX010219 JX009967 JX009901 - JX009515 JX010443 JX009743 JX010133 JX010366 KC888931 Weir et al.
AN
(2012)
Col. pyricola CBS 128531T JQ948445 JQ948776 JQ949106 JQ949436 JQ949766 JQ950096 - - - - Damm et al.
(2012b)
M
Col. ICMP 1778T JX010276 JX009934 JX009899 - JX009447 JX010414 JX009691 JX010104 JX010336 KC888928 Weir et al.
queenslandicum (2012)
D
Col. quinquefoliae MFLU 14– KU236391 KU236390 - - KU236389 KU236392 - - - - Li et al. (2016)
0626HT
Col. radicis
Col. rhexiae
CBS 529.93T
-
TE
KF687719 KF687825 KF687762 KF687847 KF687785 KF687869 KF687806 KF687743 -
CBS 133134T JX145128 - - JX145179 - - -

- Liu et al. (2014)
JX145290 Doyle et al.

EP
(2013)
Col. rhombiforme CBS 129953T JQ948457 JQ948788 JQ949118 JQ949448 JQ949778 JQ950108 - - - - Damm et al.
(2012b)
C
Col. riograndense ICMP 20083T KM655299 KM655298 KM655297 - KM655295 KM65530 KM655296 - - - Macedo et al.
(2016)
AC
Col. rusci CBS 119206T GU227818 GU228210 GU228308 GU228014 GU227916 GU228112 - - - - Damm et al.
(2009)
Col. salicis CBS 607.94T JQ948460 JQ948791 JQ949121 JQ949451 JQ949781 JQ950111 - - - - Damm et al.
PT
(2012b)
RI
Col. salsolae ICMP 19051T JX010242 JX009916 JX009863 - JX009562 JX010403 JX009696 JX010093 JX010325 KC888925 Weir et al.
(2012)
C
Col. sansevieriae MAFF 239721TAB212991 (Sequences availabe at http://www.gene.affrc.go.jp/databases-micro_search_en.php) Nakamura et al.
(2006)
CBS 126529T JQ948267 JQ948597 JQ948928 JQ949258 JQ949588 JQ949918 -
US
Col. scovillei - - - Damm et al.
(2012b)
Col. sedi MFLUCC 14– KM974758; KM974755 KM974754 - KM974756 KM974757 - - - - Liu et al. (2015c)
AN
1002T
Col. siamense ICMP 18578T JX010171 JX009924 JX009865 - FJ907423 JX010404 FJ917505 JX010094 JX010326 JQ899289 Phoulivong et al.
(2009), Weir et
M
al. (2012)
Col. sidae CBS 504.97T KF178472 KF178497 KF178521 KF178545 KF178569 KF178593 - KF178618 - - Damm et al.
(2013)
D
Col. simmondsii CBS 122122T JQ948276 JQ948606 JQ948937 JQ949267 JQ949597 JQ949927 FJ917510 FJ972591 - - Damm et al.
TE (2012b),
Prihastuti et al.
(2009)
EP
Col. sloanei IMI 364297T JQ948287 JQ948617 JQ948948 JQ949278 JQ949608 JQ949938 - - - - Damm et al.
(2012b)
Col. spaethianum CBS 167.49T GU227807 GU228199 GU228297 GU228003 GU227905 GU228101 - - - - Damm et al.
C
(2009)
AC
Col. spinaceae CBS 128.57 GU227847 GU228239 GU228337 GU228043 GU227945 GU228141 - - - - Damm et al.
(2009)
Col. spinosum CBS 515.97T KF178474 KF178498 KF178523 KF178547 KF178571 KF178595 - KF178620 - - Damm et al.
(2013)
PT
Col. sydowii CBS 135819 T KY263783 KY263785 KY263787 KY263789 KY263791 KY263793 Present study
RI
Col. syzygicola MFLUCC 10– KF242094 KF242156 - - KF157801 KF254880 KF254859 KF242125 - - Udayanga et al.
0624T (2013)
C
Col. tabacum CPC 18945T KM105204 KM105557 KM105274 KM105344 KM105414 KM105484 - - - - Damm et al.
(2014)
US
Col. tamarilloi CBS 129814T JQ948184 JQ948514 JQ948845 JQ949175 JQ949505 JQ949835 - - - - Damm et al.
(2012a)
AN
Col. tanaceti CBS 132693T JX218228 JX218243 JX259268 - JX218238 JX218233 - - - - Barimani et al.
(2013), Damm et
al. (2014)
M
Col. tebeestii CBS 522.97T KF178473 KF178505 KF178522 KF178546 KF178570 KF178594 - KF178619 - - Damm et al.
(2014)
Col. temperatum CBS 133122T JX145159 - - - - JX145211 - - - JX145298 Doyle et al.
D
(2013)
Col. ti ICMP 4832T

TE
Col. theobromicola ICMP 18649T JX010294 JX010006 JX009869 -
JX010269 JX009952 JX009898 -

JX009444 JX010447 JX009591 JX010139 JX010372 KC790726 Weir et al.
(2012)
JX009520 JX010442 JX009649 JX010123 JX010362 KM360146 Weir et al.

EP
(2012), Liu et al.
(2015b)
Col. tofieldiae CBS 495.85 GU227801 GU228193 GU228291 GU227997 GU227899 GU228095 - - - - Damm et al.
C
(2009)
AC
Col. torulosum CBS 128544T JQ005164 JQ005251 JQ005338 JQ005425 JQ005512 JQ005512 JQ005512 - - - Damm et al.
(2012a)
Col. trichellum CBS 217.64 GU227812 GU228204 GU228302 GU228009 GU227910 GU228106 - - - - Damm et al.
(2009)
PT
Col. trifolii CBS 158.83T KF178478 KF178502 KF178527 KF178551 KF178575 KF178599 - KF178624 - - Damm et al.
RI
(2014)
Col. tropicale ICMP 18653T JX010264 JX010007 JX009870 - JX009489 JX010407 JX009719 JX010097 JX010329 KC790728 Rojas et al.
(2010), Weir et
C
al. (2012)
US
Col. tropicicola BCC 38877T JN050240 JN050229 - - JN050218 JN050246 - - - - Noireung et al.
(2012)
Col. truncatum CBS 151.35T GU227862 GU228254 GU228352 GU228058 GU227960 GU228156 - - - - Damm et al.
AN
(2009)
Col. utrechtense CBS 130243T KM105201 KM105554 KM105271 KM105341 KM105411 KM105481 - - - - Damm et al.
(2014)
M
Col. verruculosum IMI 45525T GU227806 GU228198 GU228296 GU228002 GU227904 GU228100 - - - - Damm et al.
(2009)
D
Col. vietnamense CBS 125478T KF687721 KF687832 KF687769 KF687855 KF687792 KF687877 KF687816 KF687753 - - Liu et al. (2014)
Col. vignae
Col. viniferum
CBS 501.97T
GZAAS JN412804 JN412798 -

TE
KM105183 KM105534 KM105253 KM105323 KM105393 KM105463 -
-
-
JN412795 JN412813 JQ309639 JN412787 -

- -
-
Damm et al.
(2014)
Peng et al.
EP
5.08601T (2013), Hyde et
al. (2014)
Col. walleri CBS 125472T JQ948275 JQ948605 JQ948936 JQ949266 JQ949596 JQ949926 - - - - Damm et al.
C
(2012b)
AC
Col. wuxiense CGMCC KU251591 KU252045 KU251939 - KU251672 KU252200 KU251833 KU252101 - KU251722 Wang et al. 2016
3.17894T
Col. ICMP 17903T JX010261 JX009927 JX009823 - JX009478 JX010448 JX009653 JX010138 JX010369 KC790689 Shivas et al.
xanthorrhoeae (1998), Weir et
PT
al. (2012)
RI
Col. yunnanense CBS 132135T EF369490, JX546706 JX519231 JX546755 JX519239 JX519248 - - - - Liu et al. (2007),
JX546804 Cannon et al.
(2012)
C
1
ATCC: American Type Culture Collection, Virginia, USA; BCC: BIOTEC Culture Collection, National Center for Genetic Engineering and Biotechnology (BIOTEC), Khlong
US
Luang, Pathumthani, Thailand; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands;
CGMCC: Chinese General Microbiological Culture Collection Center, Beijing, China; COAD: Coleção Octávio Almeida Drummond, Universidade Ferderal de Viçosa, Viçosa,
Brazil; CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute; GZAAS: Guizhou Academy of Agricultural Sciences, Guizhou Province,
China. ICMP: International Collection of Micro-organisms from Plants, Landcare Research, Private Bag 92170, Auckland, New Zealand; IMI: International Mycological
AN
Institute, Kew, UK; MAFF: Ministry of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki, Japan; MFLU: Herbarium of Mae Fah Luang University, Chiang Rai, Thailand;
MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Thailand. HT and T indicates holotype specimens and ex-type strains, respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; gapdh: partial glyceraldehyde-3-phosphate dehydrogenase gene; chs-1: partial chitin synthase-1 gene; his: partial
histone H3 gene; act: partial actin gene; tub2: partial beta-tubulin gene; cal: partial calmodulin gene; gs: partial glutamine synthetase gene; sod2: partial manganese superoxide
M
dismutase gene; ApMat: partial Apn2-Mat1-2 intergenic spacer and partial mating type (Mat1-2) gene.
D
TE
C EP
AC
PT
Table 7. DNA barcodes of accepted Colletotrichum spp. in the C. graminicola and caudatum complexes.
RI
ITS gapdh chs-1 his3 act tub2 apn2 ApMat sod2
Col. alcorni IMI 176619T EU554079, - - - - - EU364987 FJ377901 EU554187 Crouch et al. (2009c),
JX076858 Crouch (2014)
C
T
Col. baltimorense BPI 892771 JX076866 - - - - - JX076927 JX076905 JX076886 Crouch (2014)
Col. caudasporum CGMCC JX625162 KC843512 - - KC843526 JX625190 - - - Tao et al. (2013)
US
3.15106T
Col. caudatum BPI 423339LT JX076915 - - - - - - - JX076878 Crouch (2014)
ET
CBS 131602 JX076860 - - - - - JX076932 JX076893 JX076878 Crouch (2014)
AN
Col. cereale CBS 129663 DQ126177, - JQ005795 JQ005816 JQ005837 JQ005858 - - DQ133277 Crouch et al. (2006),
JQ005774 O'Connell et al. (2012)
Col. duyunensis CGMCC JX625160 KC843515 - - KC843530 JX625187 - - - Tao et al. (2013)
3.15105T
Col. echinochloae MAFF 511473T AB439811 - - - - - - - AB440153 Moriwaki & Tsukiboshi
(2009),
M
Col. eleusines MAFF 511155T EU554131, - JX519226 - JX519234 JX519243 EU365038 - EU554234 Cannon et al. (2012),
JX519218 Crouch et al. (2009b, c),
Col. endophytum CGMCC JX625177 KC843521 - - KC843533 JX625206 - - - Tao et al. 2013
3.15108T
D
Col. eremochloae CBS 129661T JQ478447, - JX519228 - JX519236 JX519245 JQ478476 JQ478462 JQ478449 Cannon et al. (2012),
JX519220 Crouch & Tomaso-
Peterson (2012)
CBS 147945T
Col. falcatum HM171877,
JQ005772
TE
HM171677,
JQ005793
JQ005814 JQ005835 JQ005856 HM569770 HM569769 - Prihastuti et al. (2010),
O'Connell et al. (2012)
T
Col. graminicola CBS 130836 DQ003110, - JQ005788 HQ005809 JQ005830 JQ005851 - FJ377994 - Crouch et al. (2009a, c),
JQ005767 Du et al. (2005),
Col. hanaui MAFF 3054042T EU554101, - JX519225 - - JX519242 EU365008 FJ377922 EU554205 Crouch et al. (2009b, c),
EP
JX519217 Cannon et al. (2012)

Col. jacksonii MAFF 305460T EU554108, - JX519224 - JX519233 JX519241 - - EU554212 Crouch et al. (2009b, c),
Col. miscanthi MAFF 510857T EU554121, - JX519229 - JX519237 JX519246 EU365028 - EU554224 Crouch et al. (2009b, c),
C
Col. navitas CBS 125086T GQ919067, - JQ005790 JQ005811 JQ005832 JQ005853 GQ919069 GQ919071 GQ919073 Crouch et al. (2009a),
Col. nicholsonii MAFF 511115T EU554126, - JQ005791 JQ005812 JQ005833 JQ005854 EU365033 FJ377946 EU554229 Crouch et al. (2009b, c),
AC

Col. ochracea CGMCC JX625168 KC843513 - - KC843527 JX625183 - - - Tao et al. (2013)
3.15104T
Col. paspali MAFF 305403T EU554100, - JX519227 - JX519235 JX519244 EU365007 FJ377921 EU554204 Crouch et al. (2009b, c),
Col. somersetense CBS 131599T JX076862 - - - - - JX076918 JX076895 JX076880 Crouch (2014)
Col. sublineola CBS 131301T DQ003114, - JQ005792 JQ005813 JQ005834 JQ005855 EU365121 FJ378029 DO132051 Crouch et al. (2006),
PT
JQ005771 Crouch & Tomaso-
Peterson (2012),
RI
T
Col. zoysia MAFF 238573 JX076871 - - - - - JX076922 JX076899 - Crouch (2014)
1
BPI: US National Fungus Collections, Beltsville, Maryland, USA; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CGMCC: Chinese General Microbiological Culture
Collection Center, Beijing, China; IMI: International Mycological Institute, Kew, UK; MAFF: Ministry of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki, Japan. LT, ET and T indicate lectotype
specimen and ex-epitype and ex- type strains, respectively.
C
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; gapdh: partial glyceraldehyde-3-phosphate dehydrogenase gene; chs-1: partial chitin synthase-1 gene; his: partial histone H3 gene; act:
partial actin gene; tub2: partial beta-tubulin gene; apn2: partial DNA lyase gene; ApMat: partial Apn2-Mat1-2 intergenic spacer and partial mating type (Mat1-2) gene; sod2: partial manganese
superoxide dismutase gene.
US
AN
M
D
TE
C EP
AC
PT
Table 8. DNA barcodes of accepted Coniella spp.
RI
ITS rpb2 tef1
Con. africana CBS 114133T AY339344 KX833421 KX833600 Van Niekerk et al. (2004b), Alvarez
C
et al. (2016)
Con. crousii NFCCI 2213 HQ264189 - - Rajeshkumar et al. (2011)
US
Con. diplodiella CBS 111858ET AY339323 KX833423 KX833603 Van Niekerk et al. (2004b), Alvarez
et al. (2016)
Con. diplodiopsis CBS 590.84T AY339334 - - Van Niekerk et al. (2004b)
AN
Con. diplodiopsis CBS 109.23 AY339332 KX833440 KX833624 Van Niekerk et al. (2004b), Alvarez
et al. (2016)
Con. duckerae VPRI 13689 KY924929 - - Present study
= CBS 142045T
M
Con. erumpens CBS 523.78T KX833535 KX833446 KX833630 Alvarez et al. (2016)
Con. eucalyptigena CBS 139893T KR476725 - - Crous et al. (2015d)
Con. eucalyptorum CBS 112640T AY339338 KX833452 KX833637 Van Niekerk et al. (2004b), Alvarez
D
et al. (2016)
Con. fragariae CBS 172.49NT TE AY339317 KX833472 KX833663 Van Niekerk et al. (2004b), Alvarez
et al. (2016)
Con. fusiformis CBS 141596T KX833576 KX833481 KX833674 Alvarez et al. (2016)
Con. granati CBS 252.38 KX833581 KX833488 KX833681 Alvarez et al. (2016)
Con. hibisci CBS 109757ET KX833589 - KX833689 Present study
EP
Con. javanica CBS 455.68T KX833583 KX833489 KX833683 Alvarez et al. (2016)
Con. koreana CBS 143.97T KX833584 KX833490 KX833684 Alvarez et al. (2016)
Con. lanneae CBS 141597T KX833585 KX833491 KX833685 Alvarez et al. (2016)
C
Con. limoniformis CBS 111021T KX833586 KX833492 KX833686 Alvarez et al. (2016)
Con. macrospora CBS 524.73T KX833587 KX833493 KX833687 Alvarez et al. (2016)
AC
Con. malaysiana CBS 141598T KX833588 KX833494 KX833688 Alvarez et al. (2016)
Con. nicotianae CBS 875.72T KX833590 KX833495 KX833690 Alvarez et al. (2016)
Con. nigra CBS 165.60T AY339319 KX833496 KX833691 Van Niekerk et al. (2004b), Alvarez
et al. (2016)
Con. obovata CBS 111025 AY339313 KX833497 KX833692 Van Niekerk et al. (2004b), Alvarez
PT
et al. (2016)
T
Con. paracastaneicola CBS 141292 KX833591 KX833498 KX833693 Alvarez et al. (2016)
RI
Con. peruensis CBS 110394T KJ710463 KX833499 KX833695 Crous et al. (2015c), Alvarez et al.
(2016)
Con. pseudogranati CBS 137980T KJ869132 - - Crous et al. (2014b)
C
Con. pseudostraminea CBS 112624T KX833593 KX833500 KX833696 Alvarez et al. (2016)
NT
Con. quercicola CBS 904.69 KX833595 KX833502 KX833698 Alvarez et al. (2016)
US
Con. solicola CBS 766.71T KX833597 KX833505 KX833701 Alvarez et al. (2016)
Con. straminea CBS 149.22 AY339348 KX833506 KX833704 Van Niekerk et al. (2004b), Alvarez
et al. (2016)
T
AN
Con. tibouchinae CBS 131594 JQ281774 KX833507 JQ281778 Miranda et al. (2012), Alvarez et al.
(2016)
T
Con. wangiensis CBS 132530 JX069873 KX833509 KX833705 Crous et al. (2012b), Alvarez et al.
(2016)
M
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; NFCCI: National Fungal Culture Collection of India,
Agharkar Research Institute, Pune, India; VPRI: Victorian Plant Pathogen Herbarium, Bundoora, Australia. T, ET and NT indicate ex-
type, ex-epitype and ex-neotype strains, respectively.
D
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; rpb2: partial RNA polymerase II second largest subunit gene; tef1:
TE
C EP
AC
PT
Table 9. DNA barcodes of accepted Curvularia spp.
RI
ITS gapdh tef1
C. aeria CBS 294.61T HE861850 HF565450 - da Cunha et al. (2013)
C
C. affinis CBS 154.34SynT KJ909780 KM230401 KM196566 Manamgoda et al. (2015)
C. akaii CBS 317.86 KJ909782 KM230402 KM196569 Manamgoda et al. (2015)
US
C. akaiiensis BRIP 16080IsoT KJ415539 KJ415407 KJ415453 Tan et al. (2014)
C. alcornii MFLUCC 10-0703T JX256420 JX276433 JX266589 Manamgoda et al. (2012a)
C. americana UTHSC 08-3414T HE861833 HF565488 - Madrid et al. (2014)
MFLUCC 10-0711T
AN
C. asiatica JX256424 JX276436 JX266593 Manamgoda et al. (2012a)
C. australiensis BRIP 12044T KJ415540 KJ415406 KJ415452 Tan et al. (2014)
C. australis BRIP 12521T KJ415541 KJ415405 KJ415451 Tan et al. (2014)
C. bannonii BRIP 16732IsoT KJ415542 KJ415404 KJ415450 Tan et al. (2014)
M
C. borreriae CBS 859.73 HE861848 HF565455 - da Cunha et al. (2013)
C. bothriochloae BRIP 12522T KJ415543 KJ415403 KJ415449 Tan et al. (2014)
C. brachyspora CBS 186.50 KJ922372 KM061784 KM230405 Manamgoda et al. (2014)
D
C. buchloës CBS 246.49T KJ909765 KM061789 KM196588 Manamgoda et al. (2014)
C. carica-papayae CBS 135941T TE HG778984 HG779146 - Madrid et al. (2014)
C. chlamydospora UTHSC 07-2764T HG779021 HG779151 - Madrid et al. (2014)
C. clavata BRIP 61680b KU552205 KU552167 KU552159 Khemmuk et al. (2016)
C. coicis CBS 192.29SynT JN192373 JN600962 JN601006 Manamgoda et al. (2015)
C. crustacea BRIP 13524ET KJ415544 KJ415402 KJ415448 Tan et al. (2014)
EP
C. cymbopogonis CBS 419.78 HG778985 HG779129 HG779163 Madrid et al. (2014)

C. dactyloctenii BRIP 12846T KJ415545 KJ415401 KJ415447 Tan et al. (2014)
C. ellisii CBS 193.62T JN192375 JN600963 JN601007 Manamgoda et al. (2011)
C
C. eragrostidis CBS 189.48 HG778986 HG779154 HG779164 Madrid et al. (2014)

C. geniculata CBS 187.50 KJ909781 KM083609 KM230410 Manamgoda et al. (2015)
AC
C. gladioli CBS 210.79 HG778987 HG779123 - Madrid et al. (2014)

C. graminicola BRIP 23186T JN192376 JN600964 JN601008 Manamgoda et al. (2012b)
C. gudauskasii DAOM 165085 AF071338 - - Berbee et al. (1999)
C. harveyi BRIP 57412IsoT KJ415546 KJ415400 KJ415446 Tan et al. (2014)
C. hawaiiensis BRIP 11987IsoLT KJ415547 KJ415399 KJ415445 Tan et al. (2014)
PT
C. heteropogonicola BRIP 14579IsoT KJ415548 KJ415398 KJ415444 Tan et al. (2014)
C. heteropogonis CBS 284.91T JN192379 JN600969 JN601013 Manamgoda et al. (2012b)
RI
C. hominis CBS 136985T HG779011 HG779106 - Madrid et al. (2014)
C. homomorpha CBS 156.60T JN192380 JN600970 JN601014 Manamgoda et al. (2014)
C. inaequalis CBS 102.42T KJ922375 KM061787 KM196574 Manamgoda et al. (2014)
C
C. intermedia CBS 334.64 HG778991 HG779155 HG779169 Madrid et al. (2014)
C. ischaemi CBS 630.82T JX256428 JX276440 - Manamgoda et al. (2012b)
US
C. kusanoi CBS 137.29 JN192381 - JN601016 Manamgoda et al. (2015)
C. lunata CBS 730.96NT JX256429 JX276441 JX266596 Manamgoda et al. (2012b)
C. malina CBS 131274T JF812154 KP153179 KR493095 Tomaso-Peterson et al. (2016)
CBS 197.29SynT
AN
C. miyakei KJ909770 KM083611 KM196568 Manamgoda et al. (2014)
C. muehlenbeckiae CBS 144.63T HG779002 HG779108 - Madrid et al. (2014)
C. neergaardii BRIP 12919IsoT KJ415550 KJ415397 KJ415443 Tan et al. (2014)
C. neoindica BRIP 17439 AF081449 AF081406 - Berbee et al. (1999)
M
C. nicotiae CBS 655.74IsoT KJ415551 KJ415396 KJ415442 Tan et al. (2014)
= BRIP 11983
C. nodulosa CBS 160.58 JN601033 JN600975 JN601019 Manamgoda et al. (2015)
D
C. oryzae CBS 169.53IsoT KP400650 KP645344 KM196590 Manamgoda et al. (2015)
C. ovariicola CBS 470.90T TE JN192384 JN600976 JN601020 Manamgoda et al. (2012b)
C. papendorfii CBS 308.67T KJ909774 KM083617 KM196594 Manamgoda et al. (2014)
C. pallescens CBS 156.35T KJ922380 KM083606 KM196570 Manamgoda et al. (2015)
C. perotidis CBS 350.90T JN192385 KJ415394 JN601021 Manamgoda et al. (2015)
C. pisi CBS 190.48T KY905678 KY905690 KY905697 Present study
EP
C. portulacae CBS 239.48IsoT = KJ909775 KM083616 - Manamgoda et al. (2014)

BRIP 14541IsoT KJ415553 KJ415393 KJ415440 Tan et al. (2014)
C. prasadii CBS 143.64T KJ922373 KM061785 KM230408 Manamgoda et al. (2014)
C
C. protuberata CBS 376.65IsoT KJ922376 KM083605 KM196576 Manamgoda et al. (2014)

C. pseudolunata UTHSC 09-2092T HE861842 HF565459 - da Cunha et al. (2013)
AC
C. pseudorobusta UTHSC 08-3458 HE861838 HF565476 - da Cunha et al. (2013)

C. ravenelii BRIP 13165T JN192386 JN600978 JN601024 Manamgoda et al. (2012b)
C. richardiae BRIP 4371IsoLT KJ415555 KJ415391 KJ415438 Tan et al. (2014)
C. robusta CBS 624.68IsoT KJ909783 KM083613 KM196577 Manamgoda et al. (2014)
C. ryleyi BRIP 12554T KJ415556 KJ415390 KJ415437 Tan et al. (2014)
PT
C. senegalensis CBS 149.71 HG779001 HG779128 - Madrid et al. (2014)
C. sesuvi Bp-Zj 01 EF175940 - - Zhang & Li (2009)
RI
C. soli CBS 222.96T KY905679 KY905691 KY905698 Present study
IsoT
C. sorghina BRIP 15900 KJ415558 KJ415388 KJ415435 Tan et al. (2014)
C. spicifera CBS 274.52 JN192387 JN600979 JN601023 Manamgoda et al. (2012b)
C
C. subpapendorfii CBS 656.74T KJ909777 KM061791 KM196585 Manamgoda et al. (2015)
C. trifolii CBS 173.55 HG779023 HG779124 - Madrid et al. (2014)
US
C. tripogonis BRIP 12375T JN192388 JN600980 JN601025 Manamgoda et al. (2011)
IsoT
C. tropicalis BRIP 14834 KJ415559 KJ415387 KJ415434 Tan et al. (2014)
C. tsudae ATCC 44764PT KC424596 KC747745 KC503940 Deng et al. (2014)
IsoT
AN
C. tuberculata CBS 146.63 JX256433 JX276445 JX266599 Manamgoda et al. (2012b)
C. uncinata CBS 221.52T HG779024 HG779134 - Madrid et al. (2014)
C. verruciformis CBS 537.75 HG779026 HG779133 HG779211 Madrid et al. (2014)
C. verruculosa CBS 150.63 KP400652 KP645346 KP735695 Manamgoda et al. (2015)
M
1
ATCC: American Type Culture Collection, Virginia, USA; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; Bp-
Zj: Isolate housed in Biotechnology Institute, Zhejiang University, Hangzhou, China; CBS: Westerdijk Fungal Biodiversity Institute,
Utrecht, the Netherlands; DAOM: Plant Research Institute, Department of Agriculture (Mycology), Ottawa, Canada; MFLUCC: Mae
D
Fah Luang University Culture Collection, Chiang Ria, Thailand, UTHSC: Fungus Testing Laboratory, Department of Pathology at
the University of Texas Health Science Center, San Antonio, Texas, USA. ET and IsoT, IsoLT, PT, SynT, T indicate ex-epitype, ex-isotype, ex-
TE
isolectotype, ex-paratype, ex-syntype and ex-type strains, respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; gapdh: partial glyceraldehyde-3-phosphate dehydrogenase gene; tef1:
C EP
AC
PT
Table 10. DNA barcodes of accepted Monilia spp.
RI
Species Isolates1 Genbank accession number2 References
ITS tef1
M. amelanchieris ATCC 58538 Z73769 - Holst-Jensen et al. (1997)
C
M. aucupariae ARO 885.2 Z73771 - Holst-Jensen et al. (1997)
M. azaleae ATCC 58539 AB182266 - Takahashi et al. (2005)
US
M. baccarum CBS 388.93 KX982694 LT632532 This study
M. cassiopes ARO 1459.S Z73776 - Holst-Jensen et al. (1997)
M. fructicola CBS 329.35 KX982695 LT632533 This study
AN
M. fructigena CBS 348.72 KX982697 LT632535 This study
M. gaylussaciae ATCC 64508 Z73782 - Holst-Jensen et al. (1997)
T
M. jezoensis 4222 * AB182265 - Takahashi et al. (2005)
M. johnsonii ATCC 58542 Z73783 - Holst-Jensen et al. (1997)
M
M. kusanoi NBRC 9725 00972502A Harada et al. (2004)
M. laxa CBS 132.21 KX982699 LT632537 This study
M. linhartiana CBS 150.22 KX982701 LT632539 This study
D
M. megalospora ARO 619.2 Z73788 - Holst-Jensen et al. (1997)
M. mali 2769* TEAB125619 - Harada et al. (2004)
M. mespili CBS 139.23 KX982702 LT632540 This study
M. mumeicola 3231 01-01* AB125613 - Harada et al. (2004)
M. oxycocci ARO 1087.P Z73789 - Holst-Jensen et al. (1997)
M. padi ARO 923.K Z73791 - Holst-Jensen et al. (1997)
EP
M. polycodii ATCC 58546 Z73792 - Holst-Jensen et al. (1997)

M. polystroma CBS102688T KX982704 LT632542 This study
M. seaveri CBS 170.24 KX982705 - This study
C
T
M. ssiori HHUF 19771 AB220062 - Harada et al. (2005)
M. urnula ARO 476.1 Z73794 - Holst-Jensen et al. (1997)
AC
M. vaccinii-corymbosi CBS 172.24 KX982706 LT632543 This study

M. yunnanensis KY-1 HQ908788 - Hu et al. (2011)
1
ARO: Ascomycete Systematics Research Group, University of Oslo, Norway; ATCC: American Type Culture Collection, Virginia,
USA; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; HHUF: Hirosaki University, Japan; KY: Strain code
as stated in GenBank, * Hirosaki University Culture Collection, Japan. T indicates ex-type strain. A Accession number corresponding
PT
to the NITE Biological Resource Center, Japan.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; tef1: partial translation elongation factor 1-alpha gene.
C RI
US
AN
M
D
TE
C EP
AC
PT
Table 11. DNA barcodes of accepted Neofabraea spp.
RI
ITS rpb2 tub2
Na. actinidiae CBS 121403T KR859079 KR859319 KR859285 Chen et al. (2016)
C
Na. brasiliensis CNPUV499T KR107002 - KR107011 Crous et al. (2015e)
T
Na. inaequalis CBS 326.75 KR859081 KR859321 KR859287 Chen et al. (2016)
US
Na. kienholzii CBS 126461T KR859082 KR859322 KR859288 Chen et al. (2016)
Na. krawtzewii CBS 102867 KR859084 KR859324 AF281459 de Jong et al. (2001), Chen et al. (2016)
Na. malicorticis CBS 122030NT KR859086 KR859326 KR859291 Chen et al. (2016)
AN
Na. perennans CBS 102869 KR859087 KR859327 AF281473 de Jong et al. (2001), Chen et al. (2016)
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CNPUV: Centro Nacional de Pesquisa de Uva e Vinho,
Bento Gonçalves, RS, Brazil. T and NT indicates ex-type and ex-neotype strains, respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; rpb2: partial RNA polymerase II second largest subunit gene;
M
tub2: partial β-tubulin gene.
D
TE
C EP
AC
PT
Table 12. DNA barcodes of accepted Neofusicoccum spp.
RI
ITS rpb2 tef1 tub2
Nm. algeriense CBS 137504T KJ657702 - KJ657715 - Berraf-Tebbal et al. (2014)
C
Nm. andinum CBS 117453T AY693976 KX464002 AY693977 KX464923 Mohali et al. (2006), Yang et al.
(2017)
US
Nm. arbuti CBS 116131T AY819720 KX464003 KF531792 KF531793 Farr et al. (2005), Phillips et al.
(2013), Yang et al. (2017)
Nm. australe CMW 6837T AY339262 EU339573 AY339270 AY339254 Slippers et al. (2004b), Burgess &
Sakalidis (unpublished)
AN
Nm. batangarum CBS 124924T FJ900607 FJ900615 FJ900653 FJ900634 Begoude et al. (2010)
Nm. brasiliense CMM 1285PT JX513628 - JX513608 KC794030 Marques et al. (2013)
Nm. buxi CBS 116.75T KX464165 KX464010 KX464678 - Yang et al. (2017)
Nm. cordaticola CBS 123634T EU821898 EU821928 EU821868 EU821838 Pavlic et al. (2009a)
M
Nm. corticosae CBS 120081T DQ923533 KX464013 KX464682 KX464958 Summerell et al. (2006), Yang et
al. (2017)
Nm. cryptoaustrale CMW 23785T FJ752742 KX464014 FJ752713 FJ752756 Crous et al. (2013b), Yang et al.
D
(2017)
Nm. eucalypticola CBS 115679T TE AY615141 - AY615133 AY615125 Slippers et al. (2004c)
Nm. eucalyptorum CBS 115791 AF283686 - AY236891 AY236920 Smith et al. (2001), Slippers et al.
(2004a)
Nm. grevilleae CBS 129518 JF951137 - - - Crous et al. (2011a)
Nm. hellenicum CERC1947T KP217053 - KP217061 KP217069 Chen et al. (2015b)
EP
Nm. italicum MFLUCC 15-0900T KY856755 - KY856754 - Present study

Nm. kwambonambiense CBS 123639T EU821900 EU821930 EU821870 EU821840 Pavlic et al. (2009a)
Nm. luteum CBS 562.92T KX464170 KX464020 KX464690 KX464968 Yang et al. (2017)
CBS 118223T
C
Nm. macroclavatum DQ093196 KX464022 DQ093217 DQ093206 Burgess et al. (2005), Yang et al.
(2017)
AC
Nm. mangiferae CBS 118532 AY615186 KX464023 DQ093220 AY615173 Slippers et al. (2005), Burgess et
al. (2005), Yang et al. (2017)
Nm. mediterraneum CBS 121718T EU04022 KX464024 - - Crous et al. (2007c), Yang et al.
(2017)
Nm. nonquaesitum CBS 126655T GU251163 KX464025 GU251295 GU251823 Inderbitzin et al. (2010), Yang et
al. (2017)
PT
Nm. occulatum CBS 128008T EU301030 EU339558 EU339509 EU339472 Sakalidis et al. (2011)
Nm. parvum CBS 138823T AY236943 EU821963 AY236888 AY236917 Pavlic et al. (2009a), Slippers et
RI
al. (2004a),
Nm. pennatisporum MUCC 510T EF591925 - EF591976 EF591959 Taylor et al. (2009)
Nm. pistaciae CBS 595.76IsoT KX464163 KX464008 KX464676 KX464953 Yang et al. (2017)
C
Nm. pistaciarum CBS 113083T KX464186 KX464027 KX464712 KX464998 Yang et al. (2017)
Nm. pistaciicola CBS 113089T KX464199 KX464033 KX464727 KX465014 Yang et al. (2017)
US
Nm. protearum CBS 114176T AF452539 KX464029 KX464720 KX465006 Denman et al. (2003), Yang et al.
(2017)
Nm. pruni CBS 121112T EF445349 KX464034 EF445391 KX465016 Damm et al. (2007), Yang et al.
(2017)
AN
Nm. ribis CBS 115475 AY236935 EU339554 AY236877 AY236906 Slippers et al. (2004a), Sakalidis
et al. (2011)
Nm. stellenboschiana CBS 110864T AY343407 KX464042 AY343348 KX465047 van Niekerk et al. (2004a), Yang
et al. (2017)
M
Nm. umdonicola CBS 123645T EU821904 EU821934 EU821874 EU821844 Pavlic et al. (2009a)
Nm. ursorum CMW 24480T FJ752746 KX464047 FJ752709 KX465056 Crous et al. (2013b), Yang et al.
(2017)
D
Nm. viticlavatum CBS 112878T AY343381 KX464048 AY343342 KX465058 van Niekerk et al. (2004a), Yang
et al. (2017)
CBS 110887T
Nm. vitifusiforme
TE AY343383 KX464049 AY343343 KX465061 van Niekerk et al. (2004a), Yang
et al. (2017)
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CERC: China Eucalypt Research Centre (CERC), Chinese
Academy of Forestry (CAF), China; CMM: Culture collection of Phytopathogenic Fungi “Prof. Maria Menezes”, Universidade
EP
Federal Rural de Pernambuco, Recife, Brazil; CMW: Tree Pathology Co-operative Program, Forestry and Agricultural
Biotechnology Institute, University of Pretoria, South Africa; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria,
Thailand; MUCC: Murdoch University, Perth, Western Australia. T, IsoT and PT indicate ex-type, ex-isotype and ex-paratype strains,
C
respectively.
2
AC
partial translation elongation factor 1-alpha gene; tub2: partial β-tubulin gene.
ACCEPTED MANUSCRIPT
Table 13. DNA barcodes of accepted Pilidium spp.
Species Isolates1 GenBank accession References

numbers2
ITS LSU
PT
P. acerinum CBS 736.68ET AY487091 AY487092 Rossman et al. (2004)
P. lythri CBS 114293 AY487094 AY487095 Rossman et al. (2004)
P. eucalyptorum CBS 140662T KT950854 KT950868 Crous et al. (2015e)
T
RI
P. pseudoconcavum CBS 136433 KF777184 KF777236 Crous et al. (2013b)
P. septatum BCC 79016T KY922832 KY922833 Present study
1
BCC: BIOTEC Culture Collection, National Center for Genetic Engineering and
SC
Biotechnology (BIOTEC), Khlong Luang, Pathumthani, Thailand; CBS: Westerdijk Fungal
Biodiversity Institute, Utrecht, the Netherlands. T and ET indicate ex-type and ex-epitype strains,
respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: partial 28S large subunit
U
RNA gene.
AN
M
D
TE
C EP
AC
ACCEPTED MANUSCRIPT
Table 14. DNA barcodes of accepted Pleiochaeta spp.

ITS LSU
T
Plei. carotae CPC 27452 KY905669 KY905663 Present study
PT
Plei. ghindensis CBS 552.92 EU167561 EU167561 Simon et al. (2009)
ET
Plei. setosa CBS 496.63 EU167563 EU167563 Simon et al. (2009)
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CPC: Culture
collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute. T and ET indicate
RI
ex-type and ex-epitype strains, respectively.
2
SC
RNA gene.
U
AN
M
D
TE
C EP
AC
PT
Table 15. DNA barcodes of accepted Plenodomus spp.
RI
ITS rpb2 tub2
Plen. agnitus CBS 121.89 JF740194 KY064036 KY064053 de Gruyter et al. (2013), present study
C
Plen. biglobosus CBS 119951 JF740198 KY064037 KY064054 de Gruyter et al. (2013), present study
Plen. chrysanthemi CBS 539.63T JF740253 KY064038 KY064055 de Gruyter et al. (2013), present study
US
Plen. collinsoniae CBS 120227 JF740200 KY064039 KY064056 de Gruyter et al. (2013), present study
Plen. confertus CBS 375.64 AF439459 KY064040 KY064057 Câmara et al. (2002), present study
Plen. congestus CBS 244.64 AF439460 KY064041 KY064058 Câmara et al. (2002), present study
AN
Plen. deqinensis CGMCC 3.18221 KY064027 KY064034 KY064052 Present study
Plen. enteroleucus CBS 142.84ET JF740214 KY064042 KT266266 de Gruyter et al. (2013), present study
Plen. fallaciosus CBS 414.62 JF740222 KY064043 KT266271 de Gruyter et al. (2013), present study
Plen. guttulatus MFLUCC 151876 KT454721 - - Ariyawansa et al. (2015b)
M
Plen. hendersoniae CBS 113702 JF740225 KY064044 KT266271 de Gruyter et al. (2013), present study
Plen. influorescens CBS 143.84T JF740228 KY064045 KT266267 de Gruyter et al. (2013), present study
Plen. libanotidis CBS 113795 JF740231 KY064046 KY064059 de Gruyter et al. (2013), present study
D
Plen. lindquistii CBS 381.67 JF740233 - AY749028 Voigt et al. (2005), de Gruyter et al.
TE (2013)
Plen. lingam CBS 260.94 JF740235 KY064047 KY064060 de Gruyter et al. (2013), present study
Plen. lupini CBS 248.92 JF740236 KY064048 KY064061 de Gruyter et al. (2013), present study
T
Plen. pimpinellae CBS 101637 JF740240 - KY064062 de Gruyter et al. (2013), present study
Plen. salviae MFLUCC 130219 KT454725 - - Ariyawansa et al. (2015b)
EP
Plen. tracheiphilus CBS 551.93 JF740249 KY064049 KT266269 de Gruyter et al. (2013), present study
Plen. visci CBS 122783ET JF740256 KY064050 KY064063 de Gruyter et al. (2013), present study
Plen. wasabiae CBS 120119 JF740257 - KT266272 de Gruyter et al. (2013), present study
C
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CGMCC: Chinese General Microbiological Culture
Collection Center, Beijing, China; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Thailand. T and ET indicate
AC

2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; rpb2: partial RNA polymerase II second largest subunit gene; tub2:
partial β-tubulin gene.
ACCEPTED MANUSCRIPT
Table 16. DNA barcodes of accepted Protostegia spp.

ITS LSU
ET
Pr. eucleae CPC 23549 KR873252 KR873280 Crous et al. (2015a)
PT
T
Pr. eucleicola CPC 27224 KY905668 KY905662 Present study
1
CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute,
Utrecht, the Netherlands. T and ET indicate ex-type and ex-epitype strains, respectively.
RI
2
RNA gene.
U SC
AN
M
D
TE
C EP
AC
PT
Table 17. DNA barcodes of accepted Pseudopyricularia spp.
RI
ITS rpb1 act cal
Py. bothriochloae CBS 136427T KF777186 KY905701 KY905700 - Crous et al. (2013b)
C
Klaubauf et al. (2014),
T
Py. cyperi CBS 133595 KM484872 AB818013 AB274453 AB274485 Murata et al. (2014),
US
Hirata et al. (2014)
T
Py. hagahagae CPC 25635 KT950851 KT950877 KT950873 - Crous et al. (2015e)
Py. higginsii CBS 121934 KM484875 KM485095 KM485180 KM485250 Klaubauf et al. (2014)
AN
Klaubauf et al. (2014),
Py. kyllingae CBS 133597T KM484876 KM485096 AB274451 AB274484
Hirata et al. (2014)
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CPC: Culture collection of Pedro Crous, housed at
Westerdijk Fungal Biodiversity Institute. T indicates ex-type strains.
M
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; rpb1: partial RNA polymerase II largest subunit gene; act: partial
actin gene; cal: partial calmodulin gene.
D
TE
C EP
AC
PT
Table 18. DNA barcodes of accepted Puccinia spp.
RI
ITS LSU
Pu. abrupta var.
C
BRIP 59295 - KX999864 Present study
partheniicola
Pu. acroptili BPI 863523 JN204187 JN204187 Bruckart et al. (2012)
US
Pu. arthrocnemi BRIP 57772 - KX999865 Present study
Pu. aucta BRIP 60028 - KX999866 Present study
Pu. bassiae BRIP 57788 - KX999867 Present study
AN
Pu. brachypodii BRIP 59466 - KX999868 Present study
Pu. caricina BRIP 57951 - KX999870 Present study
Pu. carissae BRIP 53242 - KX999871 Present study
Pu. chrysanthemi NA EU816926 EU816926 Pedley (2009)
M
Pu. convolvuli BPI 871465 - DQ354512 Aime (2006)
Pu. coronata var. avenae
PUR 22125LT HM131256 - Liu & Hambleton (2013)
f. sp. avenae
D
Pu. coronata var. avenae
PRM 155608 HM131309 - Liu & Hambleton (2013)
f. sp. graminicola TE
Pu. coronati-agrostis PUR N114T HM131319 - Liu & Hambleton (2013)
Pu. coronati-brevispora PUR N652T HM131235 - Liu & Hambleton (2013)
Pu. coronati-calamagrostidis PUR 22155LT HM131304 - Liu & Hambleton (2013)
Pu. coronati-hordei PUR 89857T HM131225 - Liu & Hambleton (2013)
EP
Pu. coronati-japonica PUR F16131T HM131317 - Liu & Hambleton (2013)

Pu. coronati-longispora PRC 196T HM131232 - Liu & Hambleton (2013)
Pu. cygnorum NA EF490601 - Langrell et al. (2008)
C
Pu. cynodontis BRIP 57556 - KX999873 Present study

Pu. dianellae BRIP 57433 - KM249859# McTaggart et al. (2016a)
AC
Pu. dichondrae BRIP 60027 - KX999874 Present study

Pu. dioicae BPI 879279 - GU058019# Dixon et al. (2010)
Pu. duthiei BRIP 61025 - KX999875 Present study
Pu. flavenscentis BRIP 57992 - KX999876 Present study
Pu. gastrolobii BRIP 57735 - KX999877 Present study
PT
Pu. geitonoplesii BRIP 55679 KM249860 KM249860 McTaggart et al. (2016a)
Pu. gilgiana BRIP 57723 KF690673 KF690690 McTaggart et al. (2014)
RI
Pu. graminis f. sp. tritici CDL 75-36-700-3 NW_003526581.1* Duplessis et al. (2011)
Pu. grevilleae BRIP 55600 - KX999878 Present study
Pu. haemodori BRIP 57777 KF690676 KF690694 McTaggart et al. (2014)
C
Pu. hemerocallidis BRIP 53476 KM249855 KM249855 McTaggart et al. (2016a)
Pu. horiana NA HQ201326 HQ201326 Alaei et al. (2009)
US
Pu. hypochoeridis BRIP 57771 - KX999879 Present study
Pu. kuehnii BPI 879137 GQ283007 - Flores et al. (2009)
Pu. lagenophorae BRIP 57563 KF690677 KF690696 McTaggart et al. (2014)
AN
Pu. levis var. tricholaenae BRIP 56867 - KX999880 Present study
Pu. liberta BRIP 59686 - KX999881 Present study
Pu. loranthicola BRIP 59685 - KX999882 Present study
Pu. ludwigii BRIP 60129 - KX999883 Present study
M
Pu. magnusiana BPI 879281 - GU058000# Dixon et al. (2010)
Matheny & Hibbett (unpubl.
Pu. malvacearum PBM 2572 - EF561641#
data)
D
Pu. melanocephala BPI 878929 - GU058001# Dixon et al. (2010)
Pu. menthae BPI 871110 - DQ354513# Aime (2006)
Pu. mixta
TE
BRIP 61576 KU296893 KU296893 McTaggart et al. (2016a)
Pu. muehlenbeckiae BRIP 57718 - KX999884 Present study
Pu. myrsiphylli BRIP 57782 -- KM249854# McTaggart et al. (2016a)
Pu. nakanishikii BPI 879283 - GU058002# Dixon et al. (2010)
EP
Pu. merrilliana BRIP 56913 - KX999885 Present study

Pu. paullula BRIP 60018 - KX999886 Present study
Pu. pelargonii-zonalis BRIP 57414 - KX999887 Present study
C
Pu. polysora HSZ1879 HQ189433 HQ189433 Crouch & Szabo (2011)

Pu. porri BRIP 61579 KU296902 KU296902 McTaggart et al. (2016a)
AC
Pu. pritzeliana BRIP 57798 - KX999888 Present study

Pu. purpurea BRIP 57994 - KX999889 Present study
Pu. rhagodiae BRIP 60078 - KX999890 Present study
Pu. rhaphidophorae BRIP 56840 - KX999891 Present study
Pu. scirpi BRIP 61027 - KX999892# Present study
PT
Pu. scleriae BRIP 56911 - KX999893 Present study
Pu. smilacis BPI 871784 DQ354533 DQ354533 Aime (2006)
RI
Pu. sparganioidis BPI 879285A - GU058027# Dixon et al. (2010)
Pu. striiformis HSZ1834 GQ457306 GQ457306 Jin et al. (2010)
Pu. stylidii BRIP 60107 KJ622216 KJ622215 McTaggart et al. (2014)
C
Pu. tetragoniae BRIP 59703 - KX999894 Present study
Pu. triticina NA ADAS02000001.1* Kiran et al. (2016)
US
Pu. unica BRIP 56930 - KX999895 Present study
Pu. ursiniae BRIP 57993 KF690684 KF690705 McTaggart et al. (2014)
Pu. xanthii BRIP 56946 - KX999896 Present study
AN
1
CDL: US Department of Agriculture, Agricultural Research Service, Cereal Disease Laboratory; BPI: US National Fungus
Collections, Beltsville, Maryland, USA; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; HSZ: Cereal Disease
Laboratory collection, St. Paul, Minnesota, USA; PBM: P. Brandon Matheny (personal collection); PRC: Charles University in
Prague, Prague, Czech Republic; PRM: National Museum, Prague, Czech Republic; PUR: Purdue University, west Lafayette,
M
Indiana, USA. T and LT indicate ex-type and ex-lectotype, respectively.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: partial 28S large subunit RNA gene. *Whole genome
sequence. #ITS2–LSU sequence.
D
TE
C EP
AC
PT
Table 19. DNA barcodes of accepted Saccharata spp.
RI
ITS rpb2 tef1 tub2
S. banksiae CBS 142137T KY173449 KY173588 KY173596 - Crous et al. (2016b)
C
S. capensis CBS 122693T EU552130 KX464061 EU552095 KX465073 Marincowitz et al. (2008a),
Yang et al. (2017)
US
S. daviesiae CBS 142120T KY173450 KY173589 - - Crous et al. (2016b)
S. eucalypti CBS 140665T KT950857 - KT950882 - Crous et al. (2015e)
S. eucalyptorum CBS 142122T KY173451 - - - Crous et al. (2016b)
CBS 142121T
AN
S. hakeae KY173454 - - - Crous et al. (2016b)
S. hakeicola CBS 142124T KY173458 - - - Crous et al. (2016b)
S. hawaiiensis CBS 111787T KX464233 KX464062 KX464767 KX465074 Yang et al. (2017)
S. intermedia CBS 125546T GU229888 KX464064 KX464769 KX465076 Crous et al. (2009a), Yang et
M
al. (2017)
S. kirstenboschensis CBS 123537T FJ372392 KX464065 KX464770 KX465077 Crous et al. (2008), Yang et
al. (2017)
D
S. lambertiae CBS 142123T KY173459 KY173590 KY173597 - Crous et al. (2016b)
S. leucospermi CBS 122694T EU552129
TE KX464073 EU552094 - Marincowitz et al. (2008a),
Yang et al. (2017)
S. petrophiles CBS 142138T KY173463 - - - Crous et al. (2016b)
S. petrophilicola CBS 142125T KY173462 - - - Crous et al. (2016b)
S. proteae CBS 115206 KF766226 GU357753 KF766438 KF531790 Schoch et al. (2009), Phillips
EP
et al. (2013), Slippers et al.

(2013)
S. protearum CBS 114569T FJ150706 KX464072 FJ150712 - Marincowitz et al. (2008b),
C
Yang et al. (2017)

1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands. T indicates ex-type strain.
AC
2
partial translation elongation factor 1-alpha gene; tub2: partial β-tubulin gene.
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Table 20. DNA barcodes of accepted Thyrostroma spp.

ITS tef1
T. compactum CBS 335.37 KY905670 KY905681 Present study
PT
T. cornicola CBS 141280T KX228248 KX228372 Crous et al. (2016c)
T. franseriae CBS 487.71T KX228249 KY905680 Crous et al. (2016c),
present study
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CBS 700.70 KX228250 KY905682 Crous et al. (2016c),
present study
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands. T indicates ex-type
SC
strains.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; tef1: partial translation
elongation factor 1-alpha gene.
U
AN
M
D
TE
C EP
AC
PT
Table 21. DNA barcodes of accepted Venturia spp.
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ITS tef1 tub2
V. anemones CBS 370.55 EU035447 KF853965 KF808264 Crous et al. (2007d), Hamelin et
C
al. (unpublished)
V. aucupariae CBS 365.35 EU035450 - - Crous et al. (2007d)
US
V. catenospora CBS 447.91T EU035427 KF853957 KF808256 Crous et al. (2007d), Hamelin et
al. (unpublished)
V. chinensis CGMCC 3.17685T KP689596 - - Zhang et al. (2016)
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V. fraxini CBS 140930 KT823548 KT823582 KT823514 Ibrahim et al. (2016)
V. fuliginosa CGMCC 3.18370T KU220965 - - Shen et al. (2017)
V. helvetica CBS 474.61 EU035458 KF853974 KF808274 Crous et al. (2007d), Hamelin
M
et al. (unpubl.)
V. hystrioides CBS 117727 EU035459 KF853975 Crous et al. (2007d)
D
V. inaequalis CBS 476.61 EU282478 GU456288 - Sanchez-Torres et al. (2009),
Zhang et al. (2011)
MYA 2852T
V. inopina
TE AY177406 - - Newcombe (2003)
V. macularis CBS 477.61 EU035462 KF853977 KF808277 Crous et al. (2007d), Hamelin et
al. (unpubl.),
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V. martianoffiana CGMCC 3.18376 KU985131 - - Present study
V. nashicola OYO-1 HQ434393 HQ434349 HQ434437 Zhao et al. (2012)

C
V. orni CBS 140924T KT823564 KT823598 KT823530 Ibrahim et al. (2016)

AC
V. phaeosepta CGMCC 3.18368 T KU985133 - - Present study
V. polygoni-vivipari CBS 114207 EU035466 KF853984 KF808284 Crous et al. (2007d)
V. pyrina 38995 HQ434425 HQ434381 HQ434469 Zhao et al. (2012)

PT
V. saliciperda CBS 480.61 EU035471 - - Crous et al. (2007d)
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1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CGMCC: Chinese General Microbiological Culture
Collection Center, Beijing, China; MYA: the American Type Culture Collection; OYO: Private collection. T indicates ex-type strain.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; tef1: partial translation elongation factor 1-alpha gene; tub2: partial
C
beta-tubulin gene.
US
AN
M
D
TE
C EP
AC
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Table 22. DNA barcodes of accepted Wilsonomyces sp.

ITS tef1
ET
W. carpophilus CBS 231.89 KY905672 KY905684 Present study
PT
1
CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands. ET indicates ex-
epitype strain.
2
ITS: internal transcribed spacers and intervening 5.8S nrDNA; tef1: partial translation
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elongation factor 1-alpha gene.
U SC
AN
M
D
TE
C EP
AC
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Fig. 1. Bipolaris spp. A–F. Disease symptoms. A. Symptoms caused by Bipolaris eragrostiellae
(ex-type IMI 155931). B. Symptoms caused by Bipolaris gossypina (IMI 123377). C. Symptoms
caused by Bipolaris halepensis (ex-type BPI 1103129). D. Symptoms caused by Bipolaris
microstegii. E. Symptoms caused by Bipolaris musae-sapientium (ex-type K (M) 181466). F.
Symptoms caused by Bipolaris oryzae (ex-neotype MFLUCC 10-0715). G–L. Sexual morphs. G.
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Ascoma of Bipolaris luttrellii (IMI 345516). H–K. Asci. H. Bipolaris chloridis (ex-type IMI
213865). I. Bipolaris luttrellii (IMI 345516). J. Bipolaris maydis (CBS 241.92). K. Bipolaris
microlaenae (IMI 338218). L. Ascospores of Bipolaris maydis (CBS 241.92). M–Z. Asexual
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morphs. M–R. Conidiophores and conidia. M. Bipolaris setariae (BPI 880305B). N. Bipolaris
zeae (ex-type IMI 202085). O. Bipolaris bicolor (CBS 690.96). P. Bipolaris heveae (CBS 241.92).
Q. Bipolaris sorokiniana (ex-type CBS 110.14). R. Bipolaris zeicola (ex-type BPI 626668). S–Z.
SC
Conidia. S. Bipolaris cookei (ex-type BPI 428852). T. Bipolaris costina (ex-type IMI 256417). U.
Bipolaris crotonis (ex-type IMI 223682). V. Bipolaris gossypina (IMI 123377). W. Bipolaris
obclavata (ex-type IMI 331725). X. Bipolaris oryzae (ex-neotype MFLUCC 10-0715). Y.
Bipolaris salviniae (DAR 35056). Z. Bipolaris sorokiniana (ex-type CBS 110.14). Scale bars: A,
U
N = 100 μm; B, E, F = 500 μm; C = 1 cm; G, H = 20 μm; I–L, O–Z = 10 μm; M = 50 μm. All
pictures except for D taken from Manamgoda et al. (2014).
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Fig. 2. RAxML phylogram obtained from the combined ITS (478 bp), gapdh (472 bp) and tef1
(892 bp) sequences of all the accepted species of Bipolaris. The tree was rooted to Curvularia
M
buchloës CBS 246.49 and Curvularia subpapendorfii CBS 656.74. The novel species described in
this study are shown in bold. RAxML bootstrap support (BS) values above 70 % and Bayesian
posterior probability scores ≥ 0.95 are shown at the nodes. GenBank accession numbers are
indicated in Table 1. T, ET, IsoT, IsoLT, IsoPT, LT and NT indicate ex-type, ex-epitype, ex-isotype, ex-
D
isolectotype, ex-isoparatype, ex-lectotype and ex-neotype strains, respectively. TreeBASE:

S208772.
TE
Fig. 3. Bipolaris saccharicola (ex-type CBS 155.26). A–C. Conidiophores and conidia. D–H.
Conidia. Scale bars: A–C = 20 μm; H applies to D–H = 10 μm.
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Fig. 4. Bipolaris variabilis (ex-type CBS 127716). A–C. Conidiophores and conidia. D–M.
Conidia. Scale bars: A = 20 μm; B, C = 15 μm; H applies to D–H, M applies to I–M = 5 μm.
C
Fig. 5. Bipolaris yamadae (CBS 127087). A–C. Conidiophores and conidia. D–G. Conidia. Scale
bars: A–C = 20 μm; D–G = 10 μm.
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Fig. 6. Boeremia spp. A. Symptoms of Boeremia lilacis (LC 8116) on Ocimum sp. B. Symptoms
of Boeremia exigua var. rhapontica (ex-type CBS 113651) on Rhaponticum repens. C.
Symptoms of Boeremia lilacis (LC 5178) on Lonicera sp. D. Ostiole configuration of Boeremia
exigua var. exigua (CBS 431.74). E. Section of young pycnidium of Boeremia exigua var.
pseudolilacis (ex-type CBS 101207). F. Conidia of Boeremia exigua var. pseudolilacis (ex-type
CBS 101207). G. Conidia of Boeremia exigua var. heteromorpha (ex-neotype CBS 443.94).
Scale bars: D–E = 20 μm; F = 5 μm; G = 10 μm. Picture B taken from Berner et al. (2015); D–F
from Aveskamp et al. (2010); G from Chen et al. (2015).
Fig. 7. Phylogenetic tree generated from a maximum parsimony analysis based on the combined
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LSU, ITS, tub2 and rpb2 sequences. Values above the branches represent parsimony bootstrap
support values (> 50 %). The novel species are shown in bold. The tree is rooted with Phoma
herbarum CBS 615.75. GenBank accession numbers are indicated in Table 2. T and NT, ex-type and
ex-neotype strains, respectively.
PT
Fig. 8. Boeremia trachelospermi (ex-type CGMCC 3.18222). A, B. Colony on OA (front and
reverse). C, D. Colony on MEA (front and reverse). E, F. Colony on PDA (front and reverse). G.
Pycnidia forming on OA. H. Pycnidia. I–K. Conidiogenous cells. L. Conidia. Scale bars: G =
200 μm; H = 50 μm; I–K = 5 μm; L = 10 μm.
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Fig. 9. Calonectria spp. A−H. Sexual morphs. A−D. Perithecia. A. Calonectria asiatica (ex-type
CBS 114073). B. Calonectria braziliensis (ex-type CBS 230.51  CBS 114257). b Calonectria
SC
fujianensis (ex-type CBS 127201). D. Section through perithecium of Calonectria asiatica (ex-
type CBS 114073). E−F. Asci. E. Calonectria crousiana (ex-type CBS 127198). F. Calonectria
asiatica (ex-type CBS 114073). G−H. Ascospores. G. Calonectria fujianensis (ex-type CBS
U
127201). H. Calonectria acicola (ex-type CBS 114813). I−AB. Asexual morphs. I−L.
Macroconidiophores. I. Calonectria malesiana (ex-type CBS 112752). J. Calonectria
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macroconidialis (ex-type CBS 114880). K. Calonectria spathulata (ex-type CBS 555.92). L.
Calonectria ovata (CBS 111307). M−O. Conidiogenous apparatus. M. Calonectria brachiatica
(ex-type CBS 123700). N. Calonectria ecuadoriae (ex-type CBS 111406). O. Calonectria hurae
M
(CBS 114551). P. Microconidiophore of Calonectria reteaudii (ex-type CBS 112144). Q.
Megaconidia of Calonectria hurae (CBS 114551). R, S. Macroconidia. R. Calonectria angustata
(ex-type CBS 109065). S. Calonectria chinensis (ex-type CBS 114827). T. Microconidia of
Calonectria pteridis (ex-type CBS 111793). U−AB. Terminal vesicles of stipe extensions. U.
D
Calonectria brassicae (ex-type CBS 111869). V. Calonectria rumohrae (CBS 109062). W.

Calonectria cylindrospora (CBS 119670). X. Calonectria hongkongensis (ex-type CBS 114828).
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Y. Calonectria chinensis (ex-type CBS 114827). Z. Calonectria humicola (ex-type CBS 125251).
AA. Calonectria mexicana (ex-type CBS 110918). AB. Calonectria spathulata (ex-type CBS
555.92). Scale bars: A−C = 500 μm; D−F = 100 μm; G, H, M−P, R−AB = 10 μm; I−L, Q = 20
EP
μm.
Fig. 10. Disease symptoms associated with Calonectria spp. A−B. Root and collar rot of Pinus
spp. C. Cutting rot of Eucalyptus sp. D. Calonectria leaf blight of Eucalyptus sp. E. Calonectria
C
leaf blight of Metrosideros thomasii. F. Calonectria leaf blight of Myrtus communis. G. Seedling
blight of Drosera sp. H. Buxus blight. I. Root rot of Persea americana. J. Potato tuber rot. K−L.
AC
Calonectria black rot of Arachis hypogaea.
Fig. 11. The Maximum Likelihood (ML) consensus tree inferred from the combined cmdA, tef1
and tub2 sequence alignments. Thickened lines indicate branches present in the ML, Maximum
parsimony (MP) and Bayesian consensus trees. Branches with ML-bootstrap (BS) & MP-BS =
100 % and posterior probabilities (PP) = 1.00 are in blue. Branches with ML-BS & MP-BS ≥ 75
% and PP ≥ 0.95 are in green. The scale bar indicates 0.02 expected changes per site. The tree is
rooted to Calonectria braziliensis (CBS 230.51). Ex-epitype and ex-type strains are indicated in
bold. GenBank accession numbers are indicated in Lombard et al. (2010a, 2015, 2016) and
Alfenas et al. (2015). TreeBASE: S208772.
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Fig. 12. Calonectria ecuadorensis (ex-type CBS 111706). A, B. Macroconidiophores. C−E.

Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides. F−I.
Clavate vesicles. J. Macroconidia. Scale bars: A, B = 50 μm; C−J = 10 μm.
Fig. 13. Calonectria longiramosa (ex-type CBS 116319). A−C. Macroconidiophores. D−F.
PT
Conidiogenous apparatus with conidiophore branches and elongate doliiform to allantoid
phialides. G−J. Clavate vesicles. K. Macroconidia. Scale bars: A−C = 50 μm; D−K = 10 μm.
Fig. 14. Calonectria nemoralis (ex-type CBS 116319). A, B. Macroconidiophores. C−D.
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Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides. E.
Macroconidia. F−I. Fusiform to ovoid vesicles. Scale bars: A, B = 50 μm; C−I = 10 μm.
SC
Fig. 15. Calonectria octoramosa (ex-type CBS 111423). A−C. Macroconidiophores. D−F.
Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides. G−J.
Clavate vesicles. K. Macroconidia. Scale bars: A−C = 20 μm; D−K = 10 μm.
U
Fig. 16. Calonectria parvispora (ex-type CBS 111465). A−C. Macroconidiophores. D−F.
AN
Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides. G−J.
Clavate vesicles. K. Macroconidia. Scale bars: A−C = 20 μm; D−K = 10 μm.
M
Fig. 17. Calonectria tucuruiensis (ex-type CBS 114755). A−C. Macroconidiophores. D−F.
Conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform
phialides. G−J. Fusiform to ovoid to ellipsoid vesicles. K. Macroconidia. Scale bars: A−C = 50
D
μm; D−K = 10 μm.

TE
Fig. 18. A. Sweet potatoes (Ipomea batatas) infected with Ceratocystis fimbriata. B−O.
Microscopic features of Ceratocystis fimbriata (CBS 114723 = CMW 14799) on 2 % MEA. B.
Ascomata with yellowish droplets of ascospores at tips of necks, with asexual state (white
background). C. Young ascoma. D. Mature ascoma. E. Ostiolar hyphae. F, G. Ascospores. H, I.
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Aleurioconidia. J. Conidiogenous cells producing aleurioconidia (black arrow) and cylindrical-

shape conidia (white arrow). K–O. Conidia of various shapes in chains. Scale bars: B = 500 µm;
C, D = 100 µm; E = 50 µm; F, G, K–O = 10 µm; H = 50 µm; I, J = 25 µm.
C
Fig. 19. Cladosporium spp. A–H. Sexual morphs. A. Ascomata on host tissue (arrows) of
AC
Cladosporium silenes (holotype CBS H-19874). B. Ascoma and asci of Cladosporium herbarum
(CPC 11600). C. Ostiole of Cladosporium macrocarpum (CBS 299.67). D, E. Asci of
Cladosporium herbarum (CPC 11600). F, G. Ascospores of Cladosporium herbarum (CPC
11600). H. Ascospores (arrow denotes mucoid appendage) of Cladosporium silenes (holotype
CBS H-19874). I–O. Asexual morphs. I. Conidiophores of Cladosporium halotolerans (ex-type
CBS 119416). J. Fascicle of conidiophores of Cladosporium soldanellae (BPI 427476). K.
Macronematous conidiophores and conidial chains of Cladosporium cladosporioides (ex-neotype
CBS 112388). L. Conidial chains, septa of secondary ramoconidia distinctly darkened of
Cladosporium paracladosporioides (ex-type CBS 171.54). M. CryoSEM of different types of
conidia on aerial structures of Cladosporium exile (ex-type CBS 125987). Note a remarkable
pattern of blastoconidium formation (backwards) (arrow). N. Secondary ramoconidia, conidia and
scars of Cladosporium perangustum (ex-type CBS 125996). O. Whorls of secondary ramoconidia
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and conidia of Cladosporium scabrellum (ex-type CBS 126358). Scale bars: B, C, M, O = 5 μm;
D–H, K, L = 10 μm; I = 100 μm; J = 50 μm; N = 2 μm. Pictures taken from Bensch et al. (2012).
Fig. 20. The first of two equally most parsimonious trees obtained from a heuristic search of the
combined ITS/tef1/actA alignment. The tree was rooted to Cladosporium allicinum CBS 121624
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and the novel species described in this study are shown in bold. Bootstrap support values from
1000 replicates are shown at the nodes and the scale bar represents the number of changes.
GenBank accession numbers are indicated in superscript (ITS/tef1/actA). TreeBASE: S208772.
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Fig. 21. Cladosporium chasmanthicola (ex-type CPC 21300). A–H. Conidiophores and conidial
chains. Scale bars = 10 µm; C applies to C–G.
SC
Fig. 22. Cladosporium kenpeggii (ex-type CPC 19248). A. Part of the colony on SNA. B–H.
Conidiophores and conidial chains. Note the microcyclic conidiogenesis in C, forming a
secondary conidiophore at a still attached conidium with giving rise to secondary conidia and the
U
germinating conidia in C and G. Scale bars = 10 µm; C applies to C, D; E applies to E–G.
AN
Fig. 23. Cladosporium welwitschiicola (ex-type CPC 18648). A–G. Conidiophores and conidial
chains. H. Conidial chain. Scale bars = 10 µm; A applies to A–C; E applies to E, F.
M
Fig. 24. Colletotrichum spp. A–AA. Asexual morphs. A–C. Conidiomata. A. Colletotrichum
acutatum (ex-type CBS 112996). B. Colletotrichum destructivum (ex-type CBS 136228). C.
Colletotrichum cymbidiicola (ex-type IMI 347923). D. Seta of Colletotrichum torulosum (ex-
D
type CBS 128544). E. Tip of a seta of Colletotrichum gloeosporioides (ex-type CBS 112999). F.
Basis of a seta of Colletotrichum gloeosporioides (ex-type CBS 112999). G–K. Conidiogenous
cells. G. Colletotrichum brasiliense (ex-type CBS 128501). H. Colletotrichum scovillei (ex-type
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CBS 126529). I. Colletotrichum tofieldiae (CBS 495.85). J. Colletotrichum petchii (ex-type

CBS 378.94). K. Colletotrichum gloeosporioides (ex-type CBS 112999). L–R. Appressoria. L.
Colletotrichum americae-borealis (CBS 136855). M. Colletotrichum graminicola (ex-epitype
EP
CBS 130836). N. Colletotrichum gloeosporioides (ex-type CBS 112999). O. Colletotrichum

laticiphilum (ex-type CBS 112989). P. Colletotrichum phormii (ex-type CBS 118194). Q.
Colletotrichum liriopes (ex-type CBS 119444). R. Colletotrichum truncatum (ex-type CBS
151.35). S–AA. Conidia of the ex-type strains of the name-giving species of nine Colletotrichum
C
species complexes. S. Colletotrichum dematium (ex-type CBS 125.25). T. Colletotrichum

AC
acutatum (ex-type CBS 112996). U. Colletotrichum truncatum (ex-type CBS 151.35). V.

Colletotrichum gloeosporioides (ex-type CBS 112999). W. Colletotrichum graminicola (ex-
epitype CBS 130836). X. Colletotrichum boninense (ex-type CBS 123755). Y. Colletotrichum
destructivum (ex-type CBS 136228). Z. Colletotrichum orbiculare (ex-type CBS 570.97). AA.
Colletotrichum gigasporum (ex-type CBS 133266). A–C, E–H, K. from Anthriscus stem. D, I, J,
L–AA. from SNA. Scale bars: A = 200 µm; B applies to B, C = 100 µm; G applies to D–AA =
10 µm. A–AA Pictures taken by U. Damm; A, H, O–P, T from Damm et al. (2012b); B, L, Y
from Damm et al. (2014); C, D, G, J, X from Damm et al. (2012a); I, Q–S, U from Damm et al.
(2009); Z from Damm et al. (2013).
Fig. 25. A–F. Disease symptoms caused by Colletotrichum spp. A. Anthracnose on fruit of
Cucurbita maxima cv. Red Hokkaido caused by Colletotrichum coccodes. B. Leaf spot of red
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clover caused by Colletotrichum utrechtense. C. Anthracnose on bean hypocotyl caused by

Colletotrichum lindemuthianum. D. Leaf spot of Paphiopedilum sp. caused by Colletotrichum
arxii. E. Anthracnose on strawberry fruit caused by Colletotrichum nymphaeae. F. Leaf spot of
Mahonia aquifolium caused by Colletotrichum godetiae. G–R. Sexual morphs of Colletotrichum
spp. G, H. Ascomata. G. Colletotrichum petchii (ex-type CBS 378.94). H. Colletotrichum karstii
PT
(CBS 127597). I. Peridium in cross section of Colletotrichum karstii (CBS 127597). J. Outer
surface of peridium of Colletotrichum constrictum (ex-type CBS 128504). K–N. Ascospores. K.
Colletotrichum salicis (ex-type CBS 607.94). L. Colletotrichum constrictum (ex-type CBS
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128504). M. Colletotrichum cymbidiicola (ex-type IMI 347923). N. Colletotrichum parsonsiae
(ex-type CBS 128525). O–Q. Asci. O. Colletotrichum cymbidiicola (ex-type IMI 347923). P.
Colletotrichum salicis (ex-type CBS 607.94). Q. Colletotrichum constrictum (ex-type CBS
SC
128504). R. Paraphyses of Colletotrichum salicis (ex-type CBS 607.94). G, K, M, O–R. from
Anthriscus stem. H–J, L, N. from SNA. Scale bars: G = 100 µm; H = 50 µm; I applies to I–R =
10 µm. A–R Pictures taken by U. Damm; E from Cannon et al. (2012); G–J, L–O, Q from
Damm et al. (2012a); K, P, R from Damm et al. (2012b).
U
Fig. 26. One of the 100 equally most parsimonious trees obtained from a heuristic search of the
AN
combined ITS, gapdh, chs-1, act and tub2 sequence data of the currently accepted species of
Colletotrichum. Parsimony and likelihood bootstrap support values ≥ 50 % are indicated at the
nodes and branches with Bayesian posterior probabilities above 0.80 given in bold. The tree is
M
rooted with Monilochaetes infuscans CBS 869.96. GenBank accession numbers are listed in
Tables 6 and 7. The ex-type strains are in bold.
D
Fig. 27. Colletotrichum sydowii (holotype CBS 135819). A–B. Conidiomata. C. Tip of seta. D.
Basis of seta. E–F. Conidiophores. G. Tip of seta. H. Basis of seta. I–K. Conidiophores. L–P.
Appressoria. Q–R. Conidia. A, C–F, Q. from Anthriscus stem. B, G–P, R. from SNA. A–B. DM;
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C–R. DIC. Scale bars: A applies to A, B = 100 μm; E applies to C–R = 10 μm.
Fig. 28. Coniella spp. A–D. Disease symptoms. A, B. Coniella eucalyptorum on Eucalyptus sp. C.
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Coniella tibouchinae on Tibouchina granulosa. D. Coniella granati on Punica granatum (pictures

taken by M. Mirabolfathy). E–I. Sexual morph of Coniella eucalyptigena (ex-type CBS 139893).
E. Ascomata forming on OA. F. Ostiolar área. G, H. Asci. I. Ascospores. J–R. Asexual morphs.
J. Conidiomata forming on OA of Coniella diplodiella (ex-epitype CBS 111858). K. Transverse
C
section through a conidioma of Coniella eucalyptorum (ex-type CBS 112640). L, M.

AC
Conidiogenous cells giving rise to conidia. L. Coniella diplodiopsis (ex-type CBS 590.84). M.
Coniella obovata (CBS 111025). N–R. Conidia. N. Coniella africana (ex-type CBS 114133). O.
Coniella diplodiella (ex-epitype CBS 111858). P. Coniella fusiformis (ex-type CBS 141596). Q.
Coniella limoniformis (ex-type CBS 111021). R. Coniella obovata (CBS 111025). Scale bars: E =
250 μm, others = 10 μm. Pictures taken from Alvarez et al. (2016).
Fig. 29. Coniella duckerae (ex-type CBS 142045). A. Conidiomata forming on OA. B, C.
Conidiogenous cells giving rise to conidia. D. Conidia. Scale bars: A = 350 μm, others = 10 μm.
Fig. 30. Coniella hibisci (ex-epitype CBS 109757). A. Conidiomata forming on OA. B, C.
ACCEPTED MANUSCRIPT
Fig. 31. Curvularia spp. A–F. Conidiophores and conidia. A. Curvularia geniculata. B.
Curvularia neergaardii (CBS 277.91). C. Curvularia portulacea (ex-isotype BRIP 14541). D.
Curvularia tropicalis (ex-isotype BRIP 14834). E. Curvularia hominis (ex-type CBS 136985). F.
Curvularia muehlenbeckiae (ex-type CBS 144.63). G–I. Conidia. G. Curvularia crustacea (ex-
epitype BRIP 13524). H. Curvularia nicotiae (ex-isotype BRIP 11983). I. Curvularia
PT
pseudolunata (ex-type CBS 136987). J. Conidium germinating of Curvularia neergaardii (CBS
277.91). K, L. Microconidiation. K. Curvularia americana (ex-type CBS 136983). L. Curvularia
chlamydospora (ex-type CBS 136984). M. Chlamydospores of Curvularia pseudolunata (ex-type
CBS 136987). Scale bars: A = 50 μm; the others = 10 μm. Picture A taken from Samson et al.
RI
(2010); C, D, G, H from Tan et al. (2014); E, F, I, K–M from Madrid et al. (2014).
SC
Fig. 32. RAxML phylogram obtained from the combined ITS (504 bp), gapdh (461 bp) and tef1
(893 bp), sequences of all the accepted species of Curvularia. The tree was rooted to Bipolaris
panici-miliacei CBS 199.29 and Bipolaris peregianensis DAOM 221998. The novel species
described in this study are shown in bold. RAxML bootstrap support (BS) values above 70 % and
U
Bayesian posterior probability scores ≥ 0.95 are shown at the nodes. GenBank accession numbers
are indicated in Table 9. ET and IsoT, IsoLT, PT, SynT, T, ex-epitype, ex-isotype, ex-isolectotype, ex-
AN
paratype, ex-syntype and ex-type strains, respectively. TreeBASE: S208772.
Fig. 33. Curvularia pisi (ex-type CBS 190.48). A, B. Conidiophores and conidia. C–G. Conidia.
Scale bars: A–C = 10 μm; D–G = 5 μm.
M
Fig. 34. Curvularia soli (ex-type CBS 222.96). A–C. Conidiophores and conidia. D–G. Conidia.
Scale bars: A = 10 μm; others = 5 μm.
D
Fig. 35. Monilinia spp. A–C. Disease symptoms. A, B. Monilinia fructigena on Malus sp. (A,
TE
CBS 348.72) and on Sorbus aucuperiae mummified fruit (B, CBS H-14553). C. Monilinia laxa
(CBS H-14556) leaf spot on Prunus padus. D. Sporodochia in vivo of Monilinia fructigena (CBS
348.72). E, F. Conidiophores. E. Monilinia fructigena (CBS 348.72). F. Monilinia fructicola
EP
(CBS 101512). G, H. Apothecia. G. Monilinia johnsonii (CBS H-005908) on Crategus sp.

mummified fruit. H. Monilinia johnsonii (CBS H-005908) stipitate apothecia. I–K. Asci of
Monilinia johnsonii (CBS H-14554). K. Tip of an ascus showing a blue reaction with Meltzer’s
solution. L. Ascospores of Monilinia johnsonii (CBS H-14554). M, N. Macroconidia. M.
C
Monilinia fructicola (CBS 101512). N. Monilinia fructigena (CBS 348.72). O. Microconidia of

Monilinia fructicola (CBS 101512). Scale bars: A–C, G, H = 1 mm; D = 100 μm; E, F, I = 20
AC
μm; J–O = 10 μm.
Fig. 36. RaxML phylogram obtained from the combined ITS (428 bp) and tef1 (420 bp)
sequences of Monilinia spp. currently known by DNA data. Maximum parsimony and RaxML
bootstrap support (BS) values above 70 % are shown at the nodes. Numbers between parentheses
correspond to GenBank accession numbers for ITS and tef1 sequences, respectively. T, ex-type
strain. TreeBASE: S208772.
Fig. 37. Neofabraea malicorticis (ex-neotype CBS 122030). A. Colony on MEA. B. Colony on
OA. C. Conidiomata on inoculated apple. D. Conidial mass on apple peel. E. Conidiogenous
cells from sporodochium on OA. F. Conidiogenous cells giving rise to macroconidia. G.
ACCEPTED MANUSCRIPT
Microconidia on OA. H. Macroconidia from OA. I. Macroconidia from inoculated apple. J, K.

Intermediate conidia between macro- and microconidia. Scale bars: 10 μm, I applies to H, I.
Pictures taken from Chen et al. (2016).
Fig. 38.RAxML phylogram obtained from the ITS (564 bp) sequences of Neofabraea spp. and
PT
related genera. Maximum parsimony and RAxML bootstrap support (BS) values above 70 % are
shown in the nodes. The new genus introduced in this study is shown in bold. The tree was
rooted to Sclerotinia sclerotiorum CBS 499.50. Numbers between parentheses correspond to
GenBank accession numbers. T, ex-type strain. TreeBASE: S208772.
RI
Fig. 39. Neofusicoccum spp. A–D. Disease symptoms. A. Leaf blight on Protea sp. B. Canker on
SC
Vitis vinifera. C, D. Cankers on Eucalyptus sp. E–J. Sexual morphs. E, F. Ascomata. E.
Neofusicoccum parvum (ex-type ATCC 58191). F. Neofusicoccum luteum (ex-type ATCC 58193).
G, H. Asci. G. Neofusicoccum luteum (ex-type ATCC 58193). H. Neofusicoccum australe (ex-
type CMW 6837). I. Detail of ascus apex of Neofusicoccum parvum (ex-type ATCC 58191). J.
U
Ascospores of Neofusicoccum parvum (ex-type ATCC 58191). K–S. Asexual morph. K.
Conidiomata on pine needles in culture of Neofusicoccum australe (CMW 6837). L, M.
AN
Conidiogenous cells. L. Neofusicoccum mediterraneum (ex-type CBS 121718). M. Neofusicoccum
parvum (ex-type ATCC 58191). N–P. Conidia. N. Neofusicoccum arbuti (ex-type CBS 116131).
O. Neofusicoccum australe (ex-type CMW 6837). P. Neofusicoccum vitifusiforme (ex-type CBS
M
110887). Q. Coloured, 1- and 2-septate conidia of Neofusicoccum parvum (ex-type ATCC 58191).
R. Spermatogenous cells of Neofusicoccum mediterraneum (ex-type CBS 121718). S. Spermatia
of Neofusicoccum mediterraneum (ex-type CBS 121718). Scale bar: E–G = 50 μm; H, J, L–P, R =
10 μm; I, Q, S = 5 μm; K = 1 mm. Pictures taken from Phillips et al. (2013).
D
TE
Fig. 40. RAxML phylogram obtained from the combined ITS (541 bp), tef1 (302 bp), rpb2 (594
bp) and tub2 (463 bp) sequences of Neofusicoccum spp. The tree was rooted to Botryosphaeria
dothidea CBS 100564. The novel species described in this study are shown in bold. RAxML
bootstrap support (BS) values above 70 % and Bayesian posterior probability scores ≥ 0.95 are
EP
shown at the nodes. GenBank accession numbers were listed in Berraf-Tebbal et al. (2014), Chen
et al. (2015), and Yang et al. (2017). T and NT, ex-type and ex-neotype strains, respectively.
TreeBASE: S208772.
C
Fig. 41. Neofusicoccum italicum (ex-type MFLUCC 15-0900). A. Conidiomata on host substrate.
AC
B, C. Cross section of conidiomata. D, E. Immature and mature conidia attached to

conidiogenous cells. F. Mature conidia. Scale bars: B, C = 100 μm. D–F = 20 μm.
Fig. 42. Neofusicoccum pistaciicola (ex-type CBS 113089). A. Conidiomata forming on PNA. B,
C. Conidiomata cells giving rise to conidia. D. Conidia. Scale bars: 10 μm.
Fig. 43. Neofusicoccum prunii (ex-type CBS 121112). A. Conidiomata forming on PNA. B, C.
Conidiomata cells giving rise to conidia. D. Conidia. Scale bars: 10 μm.
Fig. 44. Pilidium species. A, E, G. Pilidium eucalyptorum (CBS 140662). B, F, H. Pilidium

pseudoconcavum (CBS 136433). C, D, I. Pilidium leucospermi (holotype PREM 59602). A, B.
ACCEPTED MANUSCRIPT
Conidiomata on OA and SNA, respectively. C. Vertical section of conidioma. D. Peridium. E, F.

Conidiogenous cells. G–I. Conidia. Scale bars: C = 50 μm; D–I = 10 μm. Pictures C, D, I
modified from Marincowitz et al. (2008a).
Fig. 45. Maximum likelihood (ML) tree based on partial sequences of LSU (792 bp) and ITS
PT
(477 bp) regions from reference and ex-type strains of Pilidium species. Bootstrap support values
and posterior probabilities above 70 % and 0.95, respectively are shown at the nodes.
Chaetomella raphigera and Chaetomella oblonga (Chaetomellaceae, Helotiales) were used as
RI
outgroup taxa. Numbers within parentheses correspond to GenBank accession numbers of LSU
and ITS sequences, respectively.T and ET ex-type and ex-epitype strains, respectively. TreeBASE:
S208772.
SC
Fig. 46. Pilidium septatum (ex-type BCC 79016). A. Conidiomata on OA. B, C. Longitudinal
sections of pycnidia. D. Details of ostiolar region. E. Details of the outer and inner pycnidial
walls. F, G. Conidiophores and conidiogenous cells. H. Conidia. Scale bars: B–H = 10 μm.
U
Fig. 47. Pleiochaeta carotae (ex-type CPC 27452) A. Conidiophores with conidia. B.
AN
Conidiophores and conidiogenous cells. C–P. Conidia. Scale bars: 10 µm
Fig. 48. Pleiochaeta setosa (ex-epitype CBS 496.63, CBS 502.80). A–D. Conidiophores with
M
conidia (ex-epitype CBS 496.63). E, F. Conidiogenous cells (ex-epitype CBS 496.63). G–L.
Conidia (ex-epitype CBS 496.63). M–O. Chlamydospores (CBS 502.80). Scale bars: 10 µm.
D
Fig. 49. RAxML phylogram obtained from LSU (883 bp) sequences of Dothideomycetes.
RAxML bootstrap support (BS) values above 70 % and Bayesian posterior probability scores ≥
0.95 are shown at the nodes. The tree was rooted to Botryosphaeria dothidea CBS 115476,
TE
Neofusicoccum parvum CBS 124491 and Saccharata proteae CBS 115206. Numbers between
parentheses correspond to GenBank accession numbers. T, ET, NT and PT, ex-type, ex-epitype, ex-
neotype and ex-paratype, respectively. TreeBASE: S208772.
EP
Fig. 50. Phylogenetic tree resulting from a Bayesian analysis of the combined LSU and ITS
sequences alignment of Pleiochaeta species. Bayesian posterior probabilities >0.95 are indicated
at the nodes. The tree was rooted to Thyrostroma compactum and Thyrostroma cornicola.
C
Numbers between parentheses correspond to GenBank accession numbers of ITS and LSU,
respectively. T and ET, ex-type and ex-epitype strains, respectively. *, ITS and LSU sequences.
AC
TreeBASE: S208772.
Fig. 51. Reproduction of the original drawings by Kirchner (1892) illustrating Ceratophorum
setosum (original numbers are maintained to indicate the different structures). A. fig. 1. Symptoms
in Cytisus capitatus. B. fig. 2. Young conidia. C. fig. 3. Conidiophores and conidia. D, E. figs 4, 5.
Conidia. F. fig. 6. Germinating conidia.
Fig. 52. Plenodomus spp. A. Symptoms of stem canker of Plenodomus biglobosa. B, C. Section
through ascomata. B. Plenodomus guttulatus (holotype MFLU 15-1876). C. Plenodomus salviae
(holotype MFLU 15-0515). D–G. Asci. D, E. Plenodomus guttulatus (holotype MFLU 15-1876);
F, G. Plenodomus salviae (holotype MFLU 15-0515). H–K. Ascospores. H, I. Plenodomus
ACCEPTED MANUSCRIPT
guttulatus (holotype MFLU 15-1876). J, K. Plenodomus salviae (holotype MFLU 15-0515).

Scale bars: B = 75 μm; C = 25 μm; D–G, J, K = 10 μm; H, I = 5 μm. Picture A taken from Fitt et
al. (2008); B–K from Ariyawansa et al. (2015).
Fig. 53. Phylogenetic tree generated from a maximum parsimony analysis based on the
PT
combined LSU, ITS, tub2 and rpb2 sequences. Values above the branches represent parsimony
bootstrap support values (> 50 %). Novel sequences are shown in bold. The tree is rooted with
Leptosphaeria doliolum CBS 505.75. GenBank accession numbers are listed in Table 15. T and ET,
RI
Fig. 54. Plenodomus deqinensis (ex-type CGMCC 3.18221). A, B. Colony on OA (front and
SC
reverse). C, D. Colony on MEA (front and reverse). E, F. Colony on PDA (front and reverse). G,
H. Pycnidia. I. Section of pycnidium. J. Section of pycnidial wall. K–M. Conidiogenous cells.
N. Conidia. Scale bars: G, H = 50 μm; I = 10 μm; J–M = 5 μm; N = 10 μm.
U
Fig. 55. A–E. Protostegia eucleadicola (ex-type CPC 27224). A, B. Conidiomata on leaf and OA,
respectively. C. Conidiogenous cells. D, E. Conidia. F–N. Protostegia eucleae (ex-epitype CPC
AN
23549). F. Leaf symptoms. G. Close-up of conidiomata in vivo. H. Vertical section through
conidioma. I–K. Conidia. L. Colony on MEA. M. Conidiogenous cells. N. Conidia in vitro. Scale
bars: A, B, G = 250 μm, H = 60 μm, L = 5 mm, all others = 10 μm. Pictures G–N taken from
M
Crous et al. (2015a).
Fig. 56. Pseudopyricularia spp. A. Sporulation of Pseudopyricularia kyllingae (ex-type CBS

D
133597) on sterile barley seed on SNA. B. Sporulation of Pseudopyricularia bothriochloae (ex-

type CBS 136427) on PNA. C–G. Conidiophores. C. Pseudopyricularia hagahagae (ex-type
CPC 25635). D. Pseudopyricularia cyperi (ex-type CBS 133595). E. Pseudopyricularia
TE
bothriochloae (ex-type CBS 136427). F. Pseudopyricularia hagahagae (ex-type CPC 25635). G.

Pseudopyricularia kyllingae (ex-type CBS 133597). H–K. Conidia. H. Pseudopyricularia cyperi
(ex-type CBS 133595). I. Pseudopyricularia bothriochloae (ex-type CBS 136427). J.
EP
Pseudopyricularia hagahagae (ex-type CPC 25635). K. Pseudopyricularia kyllingae (ex-type

CBS 133597). Scale bars = 10 μm. Pictures A, D, G, H, K taken from Klaubauf et al. (2014); B,
E, I taken from Crous et al. (2013b), C, F, J taken from Crous et al. (2015e).
C
Fig. 57. RAxML phylogram obtained from the combined ITS (546 bp) and LSU (750 bp)
AC
sequences of members of Pyriculariaceae. The tree was rooted to Bussabanomyces longisporus

CBS 125232. The new combination proposed is indicated in bold. RAxML bootstrap support
(BS) values above 70 % and Bayesian posterior probability scores ≥ 0.95 are shown at the nodes.
Numbers between parentheses correspond to GenBank accession numbers of ITS and LSU
sequences, respectively. T and NT, ex-type and ex-neotype strains, respectively. TreeBASE:
S208772.
Fig 58. Puccinia spp. A, D. Aecia and aeciospores of Puccinia paederiae (BRIP 58338). B, E.
Aecia and aeciospores of Puccinia loranthicola (BRIP 59685). C, F. Uredinia and
urediniospores of Puccinia oxalidis (BRIP 58379). G, J. Uredinia and urediniospores of
Puccinia philippinensis (BRIP 57418). H, K. Telia and teliospores of Puccinia malvacearum
(BRIP 60128). I, L. Telia and teliospores of Puccinia thwaitesii (BRIP 58354). Scale bars = 10
ACCEPTED MANUSCRIPT
μm.
Fig 59. Phylogram obtained from a maximum likelihood search of LSU and cytochrome c
oxidase subunit 3 of mitochondrial DNA (co3), partitioned as two separate genes in RAxML.
Bootstrap values (≥ 70 %) from 1 000 replicates in a maximum likelihood search shown above
PT
nodes. Posterior probabilities (≥0.95) summarized from 30 000 trees obtained by Bayesian
inference in MrBayes are shown below nodes. General time-reversible (GTR) with GAMMA
distribution was used as a model of evolution for both phylogenetic criteria. Major clades of
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Puccinia obtained in previous studies are shaded. New combinations made in the present study
are in bold. Two species of Sphaerophragmiaceae were selected as outgroup to the
Pucciniaceae. Numbers between parentheses correspond to GenBank accession numbers for
SC
LSU and co3 sequences, respectively.
Fig. 60. Saccharata spp. A. On Banksia sp. B. Symptomatic leaves of Saccharata proteae (CBS
121406). C. Close-up of subepidermal conidiomata of Saccharata proteae. D–E. Sexual morph of
U
Saccharata proteae (CBS 121406). D, E. Asci, paraphyses and ascospores. F–N. Asexual morphs.
F. Colony sporulating on OA of Saccharata capensis (ex-type CBS 122693). G. Pycnidial
AN
conidioma of Saccharata capensis (ex-type CBS 122693). H–J. Conidiogenous cells and conidia.
H. Saccharata proteae (CBS 121406). I, J. Saccharata capensis (ex-type CBS 122693). K–M.
Conidia. K. Saccharata intermedia (ex-type CBS 125546). L. Saccharata kirstenboschensis (ex-
M
type CBS 123537). M. Saccharata proteae (CBS 121406). N. Spermatia of Saccharata capensis
(ex-type CBS 122693). Scale bars: G = 100 μm, others = 10 μm; I applies to I, J. Pictures B–K, J–
N taken from Crous et al. (2013a); L from Crous et al. (2008).
D
Fig. 61. Saccharata leucospermi (ex-type CBS 122694). A. Conidiomata forming on OA. B, C.
TE
Fig. 62. Saccharata protearum (ex-type CBS 114569). A. Conidiomata forming on OA. B, C.
EP
Fig. 63. A–H. Thyrostroma cornicola (ex-type CBS 141280). A, B. Symptomatic leaves of Cornus
officinalis. C. Sporodochia on PNA. D. Sporulation on PNA. E–H. Conidiogenous cells giving rise
C
to conidia. I–O. Thyrostroma franseriae (ex-type CBS 487.71). I. Sporulation on PNA. J–O.
Conidiogenous cells giving rise to conidia. P. Conidia. Scale bars: 20 μm. Pictures B–F, H taken
AC
from Crous et al. (2016c).
Fig. 64. RAxML phylogram obtained from the combined ITS (531 bp) and tef1 (389 bp)
sequences of members of Dothidotthiaceae. The new species proposed is indicated in bold.
RAxML bootstrap support (BS) values above 70 % and Bayesian posterior probability scores ≥
0.95 are shown in the nodes. Numbers between parentheses correspond to GenBank accession
numbers of ITS and EF sequences, respectively. T and ET, ex-type and ex-epitype strains,
respectively. TreeBASE: S208772.
Fig. 65. Venturia spp. A–C. Disease symptoms. A. Symptoms caused by Venturia
martianoffiana (150828-1). B. Symptoms caused by Venturia catenospora (HMAS 247006). C.
Symptoms caused by Venturia fuliginosa (HMAS 247007). D–O. Sexual morphs. D–F.
ACCEPTED MANUSCRIPT
Ascomata on the host. D. Venturia chinensis (HMAS 246485). E. Venturia canadensis (NY
00914436). F. Venturia atriseda (K 189232). G–J. Asci. G. Venturia cephalariae (K 189236).
H. Venturia chinensis (HMAS 246485). I. Venturia inaequalis (NY 00914442). J. Venturia
asperata (PDD 31846). K–O. Ascospores. K. Venturia atriseda (K 189232). L. Venturia
cephalariae (K 189236). M. Venturia carpophila (K 189234). N. Venturia inaequalis (NY
PT
00914442). O. Venturia helvética (ZT 49111). P–T. Asexual morphs. P. Conidial chains of
Venturia phaeosepta (ex-type BJFCC 140520-1). Q. Conidiophores sporulation of Venturia
inaequalis (BJFC 150727-1). R. Conidia of Venturia inaequalis (BJFC 150727-1). S. Fasciculate
conidiophores of Venturia pyrina (HMAS 03923). T. Conidium of Venturia pyrina (HMAS
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03923). Scale bars: D = 300 μm; E, F = 0.2 mm; G, H, J–M, Q, T = 10 μm; I, N, O, S = 5 μm; P,
R = 20 μm.
SC
Fig. 66. Maximum likelihood tree generated from a sequence analysis of the ITS rDNA dataset.
The outgroup is Fusicladium africanum CPC 12829. Maximum likelihood bootstrap support
values above 50 % are shown at the nodes and based on 1000 replicates. Bayesian support above
U
0.70 is shown at the nodes. The species from poplar are in bold. Numbers between parentheses
correspond to GenBank accession numbers. T, ex-type strain.
AN
Fig. 67. Venturia phaeosepta (ex-type CGMCC3.18368). A–F. On MEA. A. Colony on MEA.
B. Conidial chains. C–D. Ramoconidia and conidia. E. Conidia germination. F. Conidia. G–M.
M
On leaves. G. Leaves infected by Venturia phaeosepta. H. Conidiophores and conidia. I.
Conidiogenous cells giving rise conidia. J. Conidiogenous cells. K. Conidial chains. L. Conidia.
M. Germinating conidia. Scale bars: B–D = 20 μm; E, F = 10 μm; G = 0.5 cm; H–M = 10 μm.
D
Fig. 68. Wilsonomyces carpophilus (ex-type CBS 231.89). A. Conidiomata. B–G. Conidiogenous
cells giving rise to conidia. E. Conidia. Scale bars: 10 μm.
TE
C EP
AC
AR 5185 Bipolaris cookei
CBS 136207T ACCEPTED MANUSCRIPT Bipolaris drechsleri
CBS 110.14 Bipolaris sorokiniana
100/1
BRIP 14838 Bipolaris crotonis
BRIP 14643 IsoT Bipolaris luttrellii
ET
86/- CBS 202.29
79/- Bipolaris yamadae
99/1 CBS 127087
CBS 141.31 Bipolaris setariae
94/1
PT
T
BRIP 17186 Bipolaris heliconiae
100/1
CBS 325.64
97/1 Bipolaris saccharicola sp. nov.
-/0.98 CBS 155.26T
RI
CBS 324.64
CBS 136.29NT Bipolaris maydis
SC
CBS 199.29LT Bipolaris panici-miliacei
98/1
MFLUCC 10-0715NT Bipolaris oryzae
BRIP 15847T Bipolaris sivanesaniana
U
T
88/1 BRIP 12030 Bipolaris simmondsii
99/1 CBS 280.91 T Bipolaris microlaenae
70/- -/0.96
AN
CBS 241.92 Bipolaris heveae
T
BRIP 12790 Bipolaris peregianensis
Bi 1T Bipolaris salkadehensis
M
BRIP 11740T Bipolaris axonopicola

-/0.96
ICMP 6227 Bipolaris sacchari
D
T
100/1 BRIP 10965 Bipolaris chloridis
100/1 BRIP 13577 T
Bipolaris bamagaensis
TE
BRIP 12530 T Bipolaris clavata

80/1 BRIP 12490T Bipolaris austrostipae
81/1 CBS 109894 Bipolaris cynodontis
EP
99/1
BRIP 14845IsoT Bipolaris coffeana
BRIP 14839 IsoT Bipolaris pluriseptata
ATCC 58317 Bipolaris urochloae
C
BRIP 16571 LT Bipolaris salviniae

BRIP 14840 T Bipolaris gossypina
AC
CBS 690.96 Bipolaris bicolor

ET
FIP532 Bipolaris zeicola
T
CBS 327.64 Bipolaris victoriae
T
CBS 132550 Bipolaris microstegii
T
BRIP 12239 Bipolaris woodii
-/0.95
T
CBS 127716
Bipolaris variabilis sp. nov.
CBS 127736
BRIP 11512IsoPT Bipolaris zeae
95/1
BRIP 15929T Bipolaris shoemakeri
BRIP 14453IsoLT Bipolaris secalis
79/0.98
BRIP 16226T Bipolaris subramanianii
100/- Curvularia subpapendorfii CBS 656.74T
Curvularia buchloes CBS 246.49T
0.02
CBS 102.80 Boeremia diversispora
61
CBS 100353 Boeremia noackiana
CBS 629.68T Boeremia sambuci-nigrae
CBS 443.94NT Boeremia exigua var. heteromorpha

85
CBS 100167T Boeremia exigua var. populi
CBS 116.76 Boeremia exigua var. linicola
CBS 109183 Boeremia exigua var. coffeae
CBS 101207T Boeremia exigua var. pseudolilacis
CBS 431.74 Boeremia exigua var. exigua
CBS 101213 Boeremia exigua var. forsythiae

62
CBS 100354 Boeremia exigua var. viburni
CBS 101150 Boeremia exigua var. gilvescens
CGMCC 3.18222T Boeremia trachelospermi sp. nov.
CBS 109175 Boeremia telephii
CBS 109.79 Boeremia crinicola
57 CBS 126.93 Boeremia strasseri
CBS 569.79 Boeremia lilacis
100 CBS 109176 Boeremia foveata

4x
CBS 367.91 Boeremia hedericola
CBS 378.67 Boeremia lycopersici
Phoma herbarum CBS 615.75

3x
10.0
Calonectria brasiliensis CBS 230.51
CBS 116265
Calonectria tucuruiensis
CBS 114755
Calonectria terricola CBS 116247
x2
Calonectria terricola CBS 116248
Calonectria lageniformis CBS 111324
Calonectria tropicalis CBS 116271
x2 x2
x2 Calonectria amazonica CBS 116250
Calonectria amazonica CBS 115486
Calonectria pseudopteridis CBS 163.28
Calonectria pteridis CBS 111793
x2 x2 Calonectria pteridis CBS 111867
Calonectria amazoniensis CBS 115440
x2
Calonectria amazoniensis CBS 115438
CBS 116319
x2 Calonectria longiramosa
CBS 116305
Calonectria gordoniae CBS 112142
Calonectria tereticornis CBS 111301
x2 Calonectria ovata CBS 111299
Calonectria ovata CBS 111307
CBS 116249 Calonectria nemoralis
Calonectria pseudovata CBS 134675
Calonectria pseudovata CBS 134674
Calonectria gracilis CBS 111807
Calonectria gracilis CBS 111284
x2 Calonectria quinqueramosa CBS 134654
Calonectria quinqueramosa CBS 134655
Calonectria duoramosa CBS 134656
Calonectria duoramosa LPF 453
Calonectria robigophila CBS 134652
x2
Calonectria robigophila CBS 134653
CBS 111423 Calonectria octoramosa
CBS 111706
Calonectria ecuadorensis
CBS 114164
Calonectria ecuadoriae CBS 111412
Calonectria ecuadoriae CBS 111406
Calonectria clavata CBS 114557
Calonectria clavata CBS 114666
Calonectria orientalis CBS 125259
Calonectria orientalis CBS 125260
Calonectria pini CBS 123698
Calonectria pini CBS 125253
Calonectria paraensis LPF 306
Calonectria paraensis CBS 134669
Calonectria telluricola CBS 134664
Calonectria telluricola CBS 134663
Calonectria pseudobrassicae CBS 134661
Calonectria pseudobrassicae CBS 134662
Calonectria brassicae CBS 111869
Calonectria brassicae CBS 111478
Calonectria brachiatica CBS 134665
Calonectria brachiatica CBS 123700
CBS 116108
Calonectria parvispora
CBS 111465
0.02
CBS 121624 EF679350.1/EF679425.1/EF679502.1 Cl. allicinum
KT600379.1/KT600476.1/KT600575.1
CPC 15564 Cl. angustiterminale
CPC 16763 KT600381.1/KT600478.1/KT600577.1 Cl. austroafricanum
100
CBS 125989 HM148095.1/HM148339.1/HM148584.1 Cl. gamsianum
99
CPC 18648KY646223.1/KY646226.1/KY646229.1 Cl. welwitschiicola sp. nov.
65
CBS 125993 HM148158.1/HM148402.1/HM148647.1
Cl. pseudocladosporioides
70
CBS 149.66 HM148161.1/HM148405.1/HM148650.1
85 CBS 574.78CHM148115.1/HM148359.1/HM148604.1 Cl. lycoperdinum
100
CBS 274.80CHM148114.1/HM148358.1/HM148603.1
100 CBS 126344 HM148081.1/HM148325.1/HM148570.1 Cl. delicatulum
83
CPC 14286 HM148084.1/HM148328.1/HM148573.1
CPC 19248 KY646222.1/KY646225.1/KY646228.1 Cl. kenpeggii sp. nov.
62
CPC 13867 HM148059.1/HM148301.1/HM148546.1 Cl. cladosporioides lineage 2
99
93 CBS 306.84 HM148057.1/HM148299.1/HM148544.1
CBS 109082 EF679354.1/EF679429.1/EF679506.1 Cl. silenes
CBS 113746 HM148061.1/HM148303.1/HM148548.1
64 100 Cl. cladosporioides lineage 4
CPC 13978 HM148064.1/HM148306.1/HM148551.1
68 CBS 401.80 HM148101.1/HM148345.1/HM148590.1
100 Cl. inversicolor
CPC 14190 HM148106.1/HM148350.1/HM148595.1
62 Cl. chasmanthicola sp. nov.
CPC 21300KY646221.1/KY646224.1/KY646227.1
59 CBS 125982 HM147994.1/HM148235.1/HM148481.1 Cl. acalyphae
94
CPC 17804 KT600408.1/KT600506.1/KT600604.1
100 Cl. montecillanum
CPC 17953 KT600406.1/KT600504.1/KT600602.1
20 changes
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100/1 CBS 146.63IsoT Curvularia tuberculata
CBS 169.53IsoT Curvularia oryzae
CBS 131274T Curvularia malina
98/1 CBS 655.74ACCEPTED
IsoT MANUSCRIPT Curvularia nicotiae
99/1 CBS 160.58 Curvularia nodulosa
CBS 137.29 Curvularia kusanoi
73/-
100/1 CBS 239.48IsoT Curvularia portulacae
98/1 BRIP 17439 Curvularia neoindica
Bp-zj 01 Curvularia sesuvii
2x CBS 308.67T Curvularia papendorfii
100/1 CBS 334.64 Curvularia intermedia
77/0.98 Curvularia graminicola
BRIP 23186T
100/1 BRIP 61680b Curvularia clavata
BRIP 16732IsoT Curvularia bannonii
PT
80/- CBS 189.48 Curvularia eragrostidis
CBS 630.82T Curvularia ischaemi
CBS 192.29SynT Curvularia coicis
100/1 CBS 419.78 Curvularia cymbopogonis
RI
BRIP 14579IsoT Curvularia heteropogonicola
MFLUCC 10-0703T Curvularia alcornii
CBS 624.68IsoT Curvularia robusta
98/1 UTHSC 08-3458 Curvularia pseudorobusta
SC
BRIP 12375T Curvularia tripogonis
73/0.98
88/0.99
CBS 187.50 Curvularia geniculata
99/1 CBS 149.71 Curvularia senegalensis
MFLUCC 10-0711T Curvularia asiatica
CBS 222.96T Curvularia soli sp. nov.
U
CBS 154.34T Curvularia affinis
CBS 537.75 Curvularia verruciformis
CBS 221.52T Curvularia uncinata
83/0.97
AN
100/1
CBS 197.29SynT Curvularia miyakei
100/1 BRIP 13165T Curvularia ravenelii
BRIP 13524ET Curvularia crustacea
95/- BRIP 12554T Curvularia ryleyi
89/1
M
83/1 BRIP 12521T Curvularia australis
100/1 CBS 470.90T Curvularia ovariicola
84/1 BRIP 4371IsoLT Curvularia richardiae
CBS 156.35T Curvularia pallescens
D
CBS 859.73 Curvularia borreriae

-/1
CBS 173.55 Curvularia trifolii
100/1 DAOM 165085 Curvularia gudauskasii
TE
79/1
BRIP 57412IsoT Curvularia harveyi
CBS 210.79 Curvularia gladioli
99/1
CBS 284.91T Curvularia heteropogonis
CBS 317.86 Curvularia akaii
BRIP 12522T Curvularia bothriochloae
EP
97/1
IsoT
96/1 BRIP 16080 Curvularia akaiiensis
CBS 376.65IsoT Curvularia protuberata
-/0.97 CBS 102.42T Curvularia inaequalis
NT
100/1 CBS 730.96 Curvularia lunata
C
100/1 BRIP 15900IsoT Curvularia sorghina

BRIP 14834IsoT Curvularia tropicalis
100/1 BRIP 12846T Curvularia dactyloctenii
AC
BRIP 11987IsoLT Curvularia hawaiiensis

CBS 350.90T Curvularia perotidis
BRIP 12044T Curvularia australiensis
ATCC 44764PT Curvularia tsudae
100/1 CBS 274.52 Curvularia spicifera
76/1
CBS 246.49T Curvularia buchloës
-/0.96
CBS 656.74T Curvularia subpapendorfii
100/1 BRIP 12919IsoT Curvularia neergaardii
91/1 CBS 193.62T Curvularia ellisii
92/1 CBS 144.63T Curvularia muehlenbeckiae
100/1 CBS 190.48T Curvularia pisi sp. nov.
CBS 136985T Curvularia hominis
93/1 98/1 UTHSC 09-2092T Curvularia pseudolunata
UTHSC 07-2764T Curvularia chlamydospora
100/1 CBS 186.50 Curvularia brachyspora
CBS 156.60T Curvularia homomorpha
CBS 294.61 Curvularia aeria
96/1 92/1 CBS 143.64T Curvularia prasadii
70/0.99 T
96/1 CBS 135941 Curvularia carica-papayae
100/1 CBS 150.63 Curvularia verruculosa
2x UTHSC 08-3414T Curvularia americana
100 Bipolaris peregianensis DAOM 221998
Bipolaris panici-miliacei CBS 199.29
0.02
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CBS 102688T
R
98/99/1.0
M. polystroma
0.2 95/95/1.0 CBS 102687 (KX982703,LT632541)
CBS 492.50 (KX982698,LT632536)
C
100/100/1.0 CBS 348.72 M. fructigena
98/100/1.0 3231 01-03* (AB125614,-)
3231 01-01* M. mumeicola
US
79/-/0.99
CBS 133.21 (KX982699,LT632538) M. laxa

CBS 132.21
98/94/1.0
CBS 329.35
CBS 350.49 (KX982696,LT632534) M. fructicola
AN
AL2-1 (KR778936,-)
-/-/0.99 KY-1 M. yunnanensis
86/100/0.97 CBS 170.24 M. seaveri
-/81/-
M CBS 139.23 M.mespili
ATCC 58542 M. johnsonii
100/100/1.0 CBS 120174 (KX982707,LT632544)
86/-/0.99 CBS 172.24 M. vaccinii-corymbosii
75/75/-
ATCC 64508 M. gaylussaciae
D
86/81/- ATCC 58546 M. polycodii
82/100/0.98 99/97/- CBS 388.93
ARO 951.2 (Z73773,-) M. baccarum
TE
100/-/-
ARO 1087.P M. oxycocci
75/100/-
97/100/1.0
ARO 476.1 M. urnula
ARO 619.2 M. megalospora
100/100/1.0
4222T* M. jezoensis
ATCC 58539
EP
74/-/- M. azaleae
100/100/1.0 ARO 1459.S M. cassiopes
CBS 150.22
M. linhartiana
MON09 (HM581953,-)
89/90/-
2769* M. mali
C
80/-/1.0
ATCC 58538 M. amelanchieris
8x
100/100/1.0
ARO 885.2 M. aucupariae
AC
ARO 923.K M. padi

HHUF 19771T M. ssiori
93/97/100
NBRC 9725 M. kusanoi
Encoelia glauca (LT158438,KX090673)
Chlorociboria aeruginosa AFTOL-ID 151 (DQ491501,DQ471053)
AC
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Verkleyomyces illicii ASH.3.6.2.5bT (KF137635) Verkleyomyces gen. nov.
99/1
Parafabraea eucalypti CBS 124810T (KR859091)
100/1
Parafabraea
ACCEPTED
Parafabraea MANUSCRIPT
caliginosa CBS 124806T (KR859090)
-/1 Rhizodermea veluwensis CBS 110605T (KR859282) Rhizodermea

100/1
Pezicula cinnamomea CBS 100240 (KR859109)
86/1
Pezicula neoheterochroma CBS 127388T (KR859221) Pezicula
82/- T
Pezicula fagacearum CBS 112400 (KR859201)
Pseudofabraea citricarpa CBS 130297T (KR859279) Pseudofabraea
89/0.99
Phlyctema vagabunda CBS 109875 (KR859275)
PT
-/0.97
Phlyctema
Phlyctema vincetoxici CBS 123727T (KR859278)
71/0.95 Neofabraea kienholzii CBS 126461T (KR859082)
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87/0.98 Neofabraea perennans CBS 102869T (KR859087) Neofabraea
99/1
Neofabraea malicorticis CBS 122030T (KR859086)
SC
Sclerotinia sclerotiorum CBS 499.50 (KF859933)
0.03
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CBS 113714 Neofusicoccum buxi
T
MUCC510 Neofusicoccum pennatisporum
70/-
ACCEPTED MANUSCRIPT
CBS 595.76 NT
Neofusicoccum pistaciae
CERC1948
Neofusicoccum hellenicum
CERC1947T
3x 100/1
-/1 CBS 121112T Neofusicoccum pruni sp.nov.
100/1 CBS 118099
94/0.95 Neofusicoccum corticosae
CBS 120081T
90/1
CBS 110887T Neofusicoccum vitifusiforme
98/1 CBS 112878T Neofusicoccum viticlavatum
PT
T
100/1 CBS 562.92 Neofusicoccum luteum
CBS 110487
100/1 100/1
CBS 139662T
Neofusicoccum australe
RI
CBS 121115
98/1
CBS 110864T
Neofusicoccum stellenboschiana
CBS 121116
100/0.99
SC
CBS 122813T Neofusicoccum cryptoaustrale
97/1 T
CBS 122811 Neofusicoccum ursorum
100/1
CBS 113089T Neofusicoccum pistaciicola sp. nov.
CBS 113083T
U
Neofusicoccum pistaciarum
CBS 113084
98/1
CBS 121718T Neofusicoccum mediterraneum
AN
T
CBS 114176 Neofusicoccum protearum
T
100/1 CBS 118223
Neofusicoccum macroclavatum
CBS 114497
M
T
92/1 CBS138823
Neofusicoccum parvum
CBS124491
96/1
87/1 CBS 137504T
Neofusicoccum algeriense
D
ALG9
MFLUCC 15-0900T
Neofusicoccum italicum sp. nov.
TE
CBS 719.85
82/0.99
100/1 CBS 123635
Neofusicoccum cordaticola
95/1 CBS 123634T
99/1 CBS 256.80
EP
Neofusicoccum occulatum
-/0.98
CBS 128008T
96/1
CBS 121.26
Neofusicoccum ribis
CBS 115475
C
93/1
CBS 124924T
Neofusicoccum batangarum
-/0.97 CBS 124923
AC
88/1 CBS 123645T

Neofusicoccum umdonicola
100/1 CBS 123644
CMM1285PT Neofusicoccum brasiliense
88/1 CBS 123640
Neofusicoccum kwambonambiense
100/1 CBS 123639T
-/0.97
CBS 126655T Neofusicoccum nonquaestitum
T
99/1 CBS 117453
100/1 Neofusicoccum andinum
CBS 117452
100/1 CBS 116131T
Neofusicoccum arbuti
94/1 CBS 116573
CBS 118532 Neofusicoccum mangiferae
95/1
T
100/1 CBS 115679 Neofusicoccum eucalypticola
3x CBS 115791 Neofusicoccum eucalyptorum
Botryosphaeria dothidea CBS 100564
0.03
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100/1.0
CBS 114293
Pi. lythri
0.01 99/1.0 BPI 1107274 (AY487098,AY487097)
ACCEPTED MANUSCRIPT
CBS 136433T Pi. pseudoconcavum
100/1.0
CBS 140662T Pi. eucalyptorum

99/1.0
100/1.0
CBS 736.68ET
100/1.0 Pi. acerinum
CBS 403.71 (AY487089, AY487088)
100/1.0
BCC 79016T
Pi. septatum
BCC 79037 (PENDING, PENDING)
PT
Chaetomella raphigera CBS 130.64IT (AY487086, AY487085)
Chaetomella oblonga CBS 110.78 (AY487083, AY487082)
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3x Saccharata proteae CBS 115206 (GU301869)
100/1
Neofusicoccum parvum CBS 124491T (KX464418)
97/1
ACCEPTED MANUSCRIPT
Botryosphaeria dothidea CBS 115476T (NG_027577)
Pyrenochaeta nobilis CBS 407.76NT (EU754206)
77/1
100/1
Cucurbitaria berberidis CBS 363.93 (GQ387606) Curcubitariaceae
Cucurbitaria berberidis CBS 394.84 (JX681088)
3x Pyrenophora phaeocomes AFTOLID 283 (DQ499596)
100/1
100/1 100/-
Alternaria alternata CBS 130265 (KP124391)
100/1 Alternaria slovaca CBS 567.66PT (KC584226) Pleosporaceae
PT
70/- Alternaria alternata AFTOLID 1610 (DQ678082)
Pleospora herbarum CBS 191.86T (JX681120)
Coniothyrium palmarum CBS 758.73 (JX681085)
RI
100/1
Coniothyriaceae
Coniothyrium palmarum CBS 400.71 (JX681084)
Phaeosphaeria oryzae CBS 110110ET (KF251689)
97/1
Phaeosphaeriaceae
SC
Ophiosphaerella herpotricha AFTOLID 1569 (DQ678062)
Camarosporium quaternatum CBS 483.95 (DQ377884)
97/1
Incertae sedis
Camarosporium aloes CBS 136437T (KF777198)
U
100/1
Neophaeosphaeria filamentosa CBS 102203 (JX681104)
100/1 Neophaeosphaeria filamentosa CBS 102202 (GQ387577) Neophaeosphaeriaceae
AN
Neophaeosphaeria agaves CBS 136429T (KF777227)
Leptosphaeria maculans AFTOLID 277 (DQ470946)
Alternariaster helianthi CBS 327.69 (KC584369) Leptosphaeriaceae
M
100/1
Alternariaster helianthi CBS 134020 (KC609346)
100/0.99
Ascocylindrica marina MD6011 (KT252905)
Incertae sedis
D
Ascocylindrica marina MD6012 (KT252906)

Didymella exigua CBS 183.55NT (EU754155)
TE
90/1 83/-Leptosphaerulina australis CBS 317.83 (EU754166)

Leptosphaerulina australis CBS 116307 (JN712560)
82/0.95
-/0.96 Epicoccum nigrum (KC164754) Didymellaceae
EP
Ascochyta hordei var. hordei CBS 544.74 (EU754134)

100/1
Neoascochyta europaea CBS 819.84 (KT389728)
Neoascochyta exitialis CBS 446.82 (EU167564)
73/0.99
C
-/0.96 Neoascochyta desmazieri CBS 247.79 (KT389725)

Thyrostroma compactum CBS 335.37 (KY905664)
AC
Thyrostroma franseriae CBS 487.71T (KX228301)

98/1
Thyrostroma franseriae CBS 700.70 (KX228302)
Thyrostroma cornicola CBS 141280T (KX228300)
100/1
Phaeomycocentrospora cantuariensis CPC 10157 (GU253712)
70/0.97 Phaeomycocentrospora cantuariensis CPC 11694 (GU253716)
Dothidotthia symphoricarpi CBS 119687ET (EU673273)
Dothidotthiaceae
Dothidotthia aspera CPC 12933 (EU673276)
78/0.99
Wilsonomyces carpophilus CBS 159.51 (KY905665)
100/1
Wilsonomyces carpophilus CBS 231.89ET (KY905666)
Wilsonomyces carpophilus CBS 147.36 (KY905667)
94/1
Pleiochaeta ghindensis CBS 552.92 (EU167561)
Pleiochaeta setosa CBS 496.63ET (EU167563)
70/-
Pleiochaeta carotae CPC 27452T (KY905663)
0.03
ACCEPTED MANUSCRIPT
CPC 25427T (KX228300*) Thyrostroma cornicola
1
CBS 700.70 (KX228302*) Thyrostroma compactum
CBS 142.51 (KY929372, KY929375)
1 CBS 496.63ET (EU167563*) Pleiochaeta setosa

CBS 502.8 (KY929374, KY929377)
PT
1
CBS 118.25 (KY929373, KY929376)
1
CPC 27452T (KY905669, KY905663) Pleiochaeta carotae sp. nov.
RI
CBS 552.92 (EU167561*) Pleiochaeta ghindensis
0.002
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CBS 381.67
. Plenodomus lindquistii
ACCEPTED
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MFLUCC 130219 Plenodomus salviae
CBS 122783ET Plenodomus visci
CBS 143.84T Plenodomus influorescens
CBS 120227 Plenodomus collinsoniae
CBS 539.63T Plenodomus chrysanthemi
PT
100
89 CBS 551.93 Plenodomus tracheiphilus
61
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CBS 244.64 Plenodomus congestus
CBS 113795 Plenodomus libanotidis
SC
CBS 119951 Plenodomus biglobosus
68
100 CBS 120119 Plenodomus wasabiae
U
CBS 101637T
AN Plenodomus pimpinellae
CBS 260.94 Plenodomus lingam

100
MFLUCC 151876 Plenodomus guttulatus
Plenodomus hendersoniae
M
CBS 113702
CBS 142.84ET Plenodomus enteroleucus

100
D
CBS 375.64 Plenodomus confertus

TE
CBS 121.89 Plenodomus agnitus

99
50 CBS 414.62 Plenodomus fallaciosus
100 CBS 248.92 Plenodomus lupini

EP
CGMCC 3.18221T Plenodomus deqinensis sp. nov.
Leptosphaeria doliolum CBS 505.75

C
AC
100.0
AC
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Bambusicularia brunnea CBS 133599T (KM484830, KM484948) Bambusicularia
Pyricularia penniseticola ML0031T (KM484929, -)
ACCEPTED MANUSCRIPT
Pyricularia ctenantheicola GR0002T (KM484879, -)
-/1
71/- Pyricularia grisea CBS 128304 (KM484881, -) Pyricularia
Pyricularia pennisetigena ML0036T (KM484935, -)
Pyricularia oryzae CBS 255.38 (KM484889, KM484999)
Xenopyricularia zizaniicola CBS 133593NT (KM484947, -) Xenopyricularia
PT
Proxipyricularia zingiberis CBS 132195 (KM484869, KM484986) Proxypiricularia
Barretomyces calathae OF55aT (GU294490, -) Barretomyces
RI
Neopyricularia commelinicola CBS 128308T (FJ850122, KM484958) Neopyricularia
Deightoniella roumeguerei CBS128780T (JF951153, JF951176) Deightoniella
SC
Macgarvieomyces borealis CBS 461.65T (KM484854, DQ341511)
Macgarvieomyces
Macgarvieomyces juncicola CBS 610.82 (KM484855, KM484970)
U
80/0.98
Pseudopyricularia cyperi CBS 133595T (KM484872, KM484990)

AN
Pseudopyricularia kyllingae CBS 133597T (KM484876, KM484992)
100/1
Pseudopyricularia higginsii CBS 121934 (KM484875, KM484990) Pseudopyricularia

M
95/1 Pseudopyricularia bothriochloae CBS 136427T (KF777186, KF777238)

90/0.99
Pseudopyricularia hagahagae CPC 25635T (KT950851, KT950865)
D
Bussabanomyces longisporus CBS 125232T (KM484832, KM484951)

TE
0.02
C EP
AC
AC
C EP
TE
D
M
AN
US
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100
ACCEPTED MANUSCRIPT
Sphaerophragmium acaciae KJ862350/KJ862462
Sphaerophragmiaceae
1.0 Austropuccinia psidii KF318449/KT199419
100 Puccinia rhaphidophorae KX999891/-
1.0 Puccinia paullula KX999886/KX999927
Puccinia loranthicola KX999882/
Puccinia unica KX999895/KX999932 KX999923
Puccinia magnusiana GU058000/-
Puccinia myrsiphylli KM249854/KT199418
Puccinia aucta KX999866/KX999909
Puccinia graminis NW_003526581/- Puccinia Clade II sensu
100
Puccinia brachypodii KX999868/- van der Merwe et al. (2008)
Puccinia striiformis GQ457306/- & Dixon et al. (2010)
1.0 70 Puccinia arthrocnemi KX999865/KX999908
PT
96 Puccinia rhagodiae KX999890/- Telia on:
Puccinia bassiae KX999867/KX999910 Amaranthaceae
Puccinia tetragoniae KX999894/KX999931 Apocynaceae
Uromyces salsolae KX999901/KX999935 Asparagaceae
90 Puccinia purpurea KX999889/- Asteraceae
RI
Puccinia duthiae KX999875/- Campanulaceae
95 Puccinia nakanishikii GU058002/- Fabaceae
Puccinia melanocephala GU058001/-
Puccinia horiana HQ201326/- Poaceae
Puccinia cynodontis KX999873/KX999913 Rutaceae
C
Puccinia flavenscentis KX999876/KX999915
Uromyces tenuicutis KX999904/KX999937
Puccinia boroniae KU296884/KX999911
US
Puccinia dichondrae KX999874/KX999914
Ceratocoma jacksoniae KT199394/KT199405
Uromyces lomandracearum KM249862/KT199423
Puccinia malvacearum KU296888/KX999924
Puccinia kuehnii KU296887/KX999921 Puccinia Clade III sensu
97 Puccinia polysora HQ189433/- Dixon et al. (2010)
1.0
AN
Uromyces setariae-italicae KX999902/KX999936
Puccinia pritzeliana KX999888/KX999928
on Poaceae
Puccinia heterospora KU296886/-
0.95
98 Puccinia carissae KX999871/-
1.0 Puccinia sparganioidis GU058027/-
Puccinia levis var. trichloaene KX999880/-
M
Puccinia grevilleae KX999878/KX999918
Puccinia iridis KM249853/-
97 Puccinia geitonoplesii KM249860/KX999916
Puccinia hemerocallidis KM249855/KX999920
Puccinia muehlenbeckiae KX999884/KX999925
D
Puccinia gnaphaliicola KF690703/KX999917

Puccinia ludwigii KX999883/-
Puccinia menthae DQ354513/-
TE
Puccinia caricina KX999870/KX999912

72 Puccinia cyperi KU296885/- Puccinia Clade I sensu
93 Puccinia pelargonii-zonalis KX999887/- van der Merwe et al. (2008)
1.0 Puccinia merrilliana KX999902/-
Puccinia liberta KX999881/KX999922 & Dixon et al. (2010)
Puccinia xanthii KX999896/- Telia on:
EP
90 Puccinia scirpi KX999892/KX999929 Apiaceae

Puccinia scleriae KX999893/KX999930 Asteraceae
90 Puccinia dampierae KF690688/- Convolvulaceae
Puccinia stylidii KJ622215/KT199420 Cucurbitaceae
Uromyces scaevolae KJ622214/- Cyperaceae
C
Puccinia haemodori KF690694/KX999919

Puccinia xanthosiae KF690706/- Fabaceae
Puccinia lagenophorae KF690696/KT199417 Geraniaceae
Puccinia gilgiana KF690690/- Goodeniaceae
AC
Puccinia saccardoi KF690701/- Haemodoraceae

Puccinia cnici KX999872/- Hemerocallidaceae
99 Puccinia ursiniae KF690705/KT199421 Iridaceae
Puccinia chrysanthemi EU816926/- Lamiaceae
81 Puccinia acroptili JN204187/-
Puccinia carduorum KX999869/- Polygonaceae
Puccinia hypochaeridis KX999879/- Stylidiaceae
Miyagia pseudosphaeria KX999863/-
Uromyces wedeliae KX999907/KX999939
Uromyces bidenticola KX999897/-
Puccinia abrupta var. partheniicola KX999864/-
Uromyces geranii KX999898/-
Puccinia gastrolobii KX999877/-
Puccinia convolvuli DQ354512/-
Uromyces orientalis KX999899/KX999934
Uromyces trifolii-repentis KX999905/KX999938
1.0 98 Uromyces appendiculatus KM249870/KX999933
100 Uromyces appendiculatus var. crassitunicatus -
1.0 Uromyces s. str.
1.0 Uromyces vignae KX999906/- KU296911/-
Uromyces viciae-fabae KM249865/- on Fabaceae
72 Uromyces striatus KX999903/-
0.03 1.0 Uromyces pisi-sativi KX999900/-
AC
C EP
TE
D
M
AN
US
C RI
PT
TE
D
M
A
TE
D
M
A
AC
C EP
TE
D
M
AN
US
C RI
PT
CBS 113.24 (KF278454, -) Mycocentrospora acerina
100/-
100/1 CBS 159.51 (KY905671, KY905683)
ACCEPTED MANUSCRIPT Wilsonomyces carpophilus
CBS 231.89ET (KY905666, KY905684)
CBS 496.63ET (EU167563, -) Pleiochaeta setosa
CBS 335.37 (KY905664, KY905681) Thyrostroma compactum

100/1
CBS 141280T (KX228248, KX228372) Thyrostroma cornicola
83/- CBS 700.70 (KX228250, KY905682) Thyrostroma franseriae sp. nov.
PT
84/1 CBS 487.71T (KX228249, KY905680)
0.02
RI
U SC
AN
M
D
TE
C EP
AC
AC
C EP
TE
D
M
AN
US
C RI
PT
CBS 478.61 (EU035464) Venturia minuta
62/0.87 CGMCC 3.17685T (KP689596) Venturia chinensis
ACCEPTED MANUSCRIPT
CBS 466.61 (EU035453) Venturia chlorospora
100/0.81 CBS 474.61 (EU035458) Venturia helvetica
CBS 445.54 (EU035461) Venturia lonicerae
55/0.98
CBS 371.55 (EU035448) Venturia atriseda
CBS 114207 (EU035466) Venturia polygoni-vivipari
100/0.74 BJFCC 140822-1 (KU220964)
Venturia catenospora
CBS 447.91T (EU035427)
CBS 690.85 (EU035476) Venturia viennotii
CBS 689.85 (KF793778)
PT
99/1.00 CBS 477.61 (EU035462)
Venturia macularis
93/0.90 CBS 309.31 (EU035437)

CBS 813.69 (EU282479) Venturia inaequalis
RI
CBS 476.61 (EU282478)
CBS 595.70 (EU282477)
CBS 112235 (EU035433) Fusicladium mandshuricum
lxb (KP979113) Sporocadus populinus
SC
CBS 256.38 (EU035467) Venturia populina
CBS 694.85 (EU035474) Venturia tremulae var. populi-albae
CBS 480.61 (EU035471) Venturia saliciperda
CBS 695.85 (EU035473) Venturia tremulae var. grandidentatae
U
55/0.75
CBS 112625 (EU035438) Venturia tremulae
91/0.96
CBS 118894 (EU035456) Venturia ditricha
AN
CBS 128206 (HQ599579) Fusicladium peltigericola
CBS 257.38 (EU035475) Venturia tremulae var. tremulae
70/-
T
100/1.00 CGMCC 3.18370 (KU220965) Venturia fuliginosa
M
BJFCC 150620-1 (KU985134)

BJFCC 150904-3 (KU985139)
BJFCC 150904-2 (KU985138)
90/0.98 Venturia phaeosepta sp.nov.
BJFCC 150808-1 (KU985137)
D
BJFCC 150807-1 (KU985136)

BJFCC 150806-1 (KU985135)
TE
98/0.97 CGMCC 3.18368T (KU985133)

BJFCC 150828-1 (KU985131) Venturia martianoffiana
BJFCC 150904-1 (KU985132)
Fusicladium africanum CPC 12829 (EU035424)
EP
10
C
AC
ACCEPTED MANUSCRIPT
PT
C RI
US
AN
M
D
TE
EP
C
AC
CE
PT
ED
M
AN
US

Genera of Phytopathogenic Fungi (PDFDrive)

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Genera of Phytopathogenic Fungi (PDFDrive)

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Genera of phytopathogenic fungi: GOPHY 1

Y. Marin-Felix, J.Z. Groenewald, L. Cai, Q. Chen, S. Marincowitz, I. Barnes, K.

To appear in: Studies in Mycology

Genera of phytopathogenic fungi: GOPHY 1

Available online xxx

5. Name changes that result from the new phylogenetic placement.

typifications were available for inclusion.

MATERIAL AND METHODS

Isolates and morphological analysis

DNA isolation, amplification and analyses

Bipolaris Shoemaker, Canad. J. Bot. 37: 882. 1959. Fig. 1.

Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Pleosporaceae.

DNA barcodes (genus): LSU, ITS.

DNA barcodes (species): ITS, gapdh, tef1. Table 1. Fig. 2.

with sterilised rice or wheat straw at 25 °C is used.

Chlamydospores and sexual morph not observed.

Etymology: Name refers to the highly variable conidial morphology.

Authors: Y. Marin-Felix, P.W. Crous & Y.P. Tan

Boeremia Aveskamp et al., Stud. Mycol. 65: 36. 2010. Fig. 6.

Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Didymellaceae.

Authors: Q. Chen & L. Cai

DNA barcodes (genus): LSU, ITS.

are readily produced by Ca. pseudovata (Alfenas et al. 2015).

Etymology. Name refers to the small macroconidia of this fungus.

Authors: L. Lombard & P.W. Crous

Classification: Sordariomycetes, Hypocreomycetidae, Microascales, Ceratocystidaceae.

DNA barcodes (species): ITS, bt1, tef1, rpb2, ms204. Table 4.

Disease symptoms: Root rots, cankers and vascular stain.

Authors: I. Barnes, S. Marincowitz, Z.W. de Beer, & M.J. Wingfield

Classification: Dothideomycetes, Dothideomycetidae, Capnodiales, Cladosporiaceae.

Members of Cladosporiaceae: Cladosporium, Graphiopsis, Neocladosporium, Rachicladosporium, Toxicocladosporium,

(Bensch et al. 2010).

thickened; hila conspicuous, 0.5–2 µm diam; microcyclic conidiogenesis not occurring.

Authors: K. Bensch, U. Braun, J.Z. Groenewald & P.W. Crous

Classification: Sordariomycetes, Hypocreomycetidae, Glomerellales, Glomerellaceae.

Hosts: Occurs on a wide range of plant families.

Authors: U. Damm, R.S. Jayawardena, L. Cai

Classification: Sordariomycetes, Sordariomycetidae, Diaporthales, Schizoparmaceae.

DNA barcodes (genus): LSU, rpb2.

DNA barcodes (species): ITS, rpb2, tef1. Table 8.

Description and illustration: Yip (1987).

Classification: Dothideomycetes, Pleosporomycetidae, Pleosporales, Pleosporaceae.

DNA barcodes (genus): LSU, ITS.

DNA barcodes (species): ITS, gapdh, tef1. Table 9. Fig. 32.

brown, globose to subglobose (adapted from Sivanesan 1987).

Etymology: Named after its ecology, occurring in soil, “solum”.

Authors: Y. Marin-Felix, P.W. Crous & Y.P. Tan

Monilinia Honey, Mycologia 20: 153. 1928. Fig. 35.

Synonym: Monilia Bonord., Handb. Mykol.: 7. 1851.

Classification: Leotiomycetes, Leotiomycetidae, Helotiales, Sclerotiniaceae.

DNA barcode (genus): ITS.

DNA barcode (species): tef1. Table 10. Fig. 36.

Authors: M. Sandoval-Denis & P.W. Crous

Classification: Leotiomycetes, Leotiomycetidae, Helotiales, Dermateaceae.

DNA barcodes (genus): LSU.

Disease symptoms: Anthracnose canker, perennial canker and bull's-eye rot.

Verkleyomyces Y. Marín & Crous, gen. nov. MycoBank MB820818.

Description and illustration: Wang et al. (2015).

Authors: Y. Marin-Felix & P.W. Crous

Classification: Dothideomycetes, Botryosphaeriales, Botryosphaeriaceae.

DNA barcodes (genus): LSU, rpb2.

the dark at 28 ºC.