Professional Documents
Culture Documents
4 (2015)
R api d c o m municatio n
Run Hua Yi*, Luo Jun Gan, Jing Chen, Xiao Ling
Xu
Department of Biotechnology, Agricultural College, Guangdong Ocean University, Zhanjiang 524088, Guangdong Province,
China
Abstract: Leaf spot disease on the spider lily [Hymenocallis littoralis (Jacq.) Salisb.] continues to cause serious problems in China. To
con- firm the pathogen, the pathogenicity of isolates from diseased leaves was tested according to Koch’s postulates. The isolates
were tenta- tively identified using morphological characteristics and confirmation was done by phylogenetic analysis of the
translation elongation factor 1-alpha gene (TEF1), the actin gene (ACT), and internal transcibed spacer (ITS) sequences using
neighbor-joining (NJ), maximum parsimony (MP), and Bayesian inference (BI) methods. The pathogen was identified as Phyllosticta
hostae. Molecular analysis indicated very little diversity in the TEF1, ACT, and ITS gene. This is the first report of P. hostae causing leaf
spot disease on spider lily in China.
Key words: Hymenocallis littoralis, leaf spot disease, Phyllosticta hostae, spider lily
*Corresponding address:
scibyrh@163.com
439 Journal of Plant Protection Research
Characterization
55 (4), of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
Six millimeters mycelial plugs from the colony MrBayes ver- sion 3.1.2 (Ronquist and Huelsenbeck
margin were inoculated onto the sterile surface of the 2003), respectively.
leaves after the leaves had been acupunctured with
sterile needles. The absorbent tampons were laid aside,
and covered with transparent cellophane that was
perforated with a needle for aeration. Sterile PDA plugs
were used as the controls. The disease development was
observed everyday.
Morphological characteristics on PDA were observed
periodically until sporulation, by the methods described
by Wulandari et al. (2009). Mycelial discs (5 mm diam-
eter) were cut from the edges of the growing areas of the
7-day-old colony, and transferred to the center of Corn-
meal Agar (CMA), Malt Extract Agar (MEA), PDA, and
Oatmeal Agar (OA) plates, and incubated at 25°C under
dark conditions. The mycelial growth rates were mea-
sured after incubation for two weeks. The pycnidia on
the diseased leaf were examined and crushed to release
spores in water mounts on a glass slide, under light mi-
croscope (Olympus BX51). Images were acquired with
a digital camera DXM 1200F (Nikon). All microscopic
characteristics were measured for at least 50 individuals,
to calculate the mean size.
Pathogens were grown on Potato Dextrose Broth
(PDB) and incubated in a 180 rpm rotatory shaker for 5
days at 25°C. Mycelia collection and genomic DNA exac-
tion followed the protocol of Yi et al. (2003). Internal tran-
scribed spacer (ITS) and small subunit (SSU) sequences
were respectively amplified using the primer pair ITS1/
ITS4 and NS1/NS4 (White et al. 1990). Primer pair EF1-
728F (Carbone and Kohn 1999) and EF-2 (O’Donnell et al.
1998) were used to amplify the partial translation elonga-
tion factor 1-alpha gene (TEF1). The primer pair ACT-
512F
(Carbone and Kohn 1999) and ACT2Rd (Quaedvlieg et al.
2011) were used to amplify the partial actin gene
(ACT).
To amplify the different loci, the polymerase chain
reaction (PCR) mixture that was used consisted of tem-
plate DNA (5–10 ng), 1.5 U Taq DNA polymerase, 1X
PCR buffer, 0.25 mM of each dNTP, and 0.2 µM of
each
primer, and made up to a total reaction volume of 50 µl
with sterile double-distilled water (ddH2O). The cycling
parameters were started with a long initial denaturation
step at 95°C for 4 min, 35 cycles of denaturation at 94°C
for 60 sec, annealing at 50°C for SSU primers and 55°C
for ITS, ACT, and TEF primers for 60 sec, extension at
72°C for 60 sec followed by a final extension at 72°C for
10 min, and a soaking at 4°C for 3 h. Amplified
fragments were purified and sequenced by the Sangon
Biotech (Shanghai, China) Co., Ltd.
The sequences from the forward and reverse primers
were assembled and deposited in the GenBank. The
novel sequences of three isolates in this study, together
with the additional reference sequences of representative
Phyl- losticta taxa were retrieved from GenBank (Table 1).
The alignment of the obtained sequences was performed
and truncated at the 5′- and 3′-ends using BioEdit (Hall
1999).
Phylogenetic trees were constructed using neighbor join-
ing (NJ), maximum parsimony (MP), and Bayesian infer-
ence (BI) methods. It should be noted, that the NJ, MP,
and BI analyses were performed using MEGA5.0
(Tamura et al. 2011), PAUP4.0 (Swofford 2003), and
440 ForJournal
NJ analyses, the evolutionary
of Plant Protection Research 55 distances
Characterization
(4), were
of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
com- puted using the Kimura 2-parameter model with
1,000 bootstrap replicates. Maximum-parsimony
analyses were estimated using the heuristic searches
with tree bisection reconnection (TBR) branch swapping
and 1,000 random addition sequences. Branches of zero
length were col- lapsed. Statistics calculated for
parsimony included tree length (TL), consistency index
(CI), retention index (RI), and the rescaled consistence
index (RC). For Bayesian analyses, the best fit nucleotide
substitution model was evaluated using jModelTest
v2.1.4 (Santorum et al. 2014) according to the Bayesian
information criterion (BIC). The model (GTR+I+G) and
parameters lset apply to = (1/DNA) nst = 6 rates =
invgamma; unlink shape = (all) pinvar = (all) statefreq =
(all) revmat = (all); prset ratepr
= variable statefreqpr = dirichlet (1,1,1,1); were applied.
Posterior probabilities (PP) were determined by the Mar-
kov Chain Monte Carlo (MCMC) method (Mossel and
Vi- goda 2005), four MCMC chains were run
simultaneously from random trees for ten million
generations, sampled every 1,000 generations, and
repeated twice. The first 25 percentages of trees were
discarded as the burn-in phase of each analysis. The
remaining trees were used for de- termining posterior
probabilities and were shown in the majority rule
consensus tree. The aligned data and phylo- genetic trees
were deposited in TreeBase (http://purl.org/
phylo/treebase/phylows/study/TB2:S14438).
Results
Phyllosticta leaf spot on spider lily occurred all year but
became most serious during late September to early Oc-
tober in Guangdong Province. Small, circular or oval,
brown-reddish to black spots occurred on the leaves in
the early period. Spots sometime formed to be concave,
oval spots, occasionally surrounded by a water-soaked,
discolored halo. The spots gradually enlarged to be big
patches. Subsequently, the diseased leaves became
yellow with blighting at the tip (Fig. 1A). Pycnidia
appeared on the infected positions or at the leaf tip (Fig.
1B).
The leaves with typical symptoms and with pyc-
nidia were collected from the campus of the Guangdong
Ocean University, Zhanjiang, Guangdong Province, Chi-
na (E110°17’47” N21°08’58”). The collected leaves were
dried at 40°C for a week and deposited in the
Mycological Herbarium of Institute of Microbiology,
Chinese Acade- my of Sciences, Beijing, China (HMAS).
The numbers of the voucher herbarium specimens were
HMAS 244379 and HMAS 244380.
From different sites, leaves with various degrees of
se- verity and water-soaked discolored patches, brown-
black patches, concave oval spots, and irregular big
patches, were sampled so as to isolate the pathogens. The
same morphological characteristics of isolates were
obtained from all the diseased leaf tissues. On PDA,
these isolates displayed the Phyllosticta-like
characteristics of being lo- bate, and irregular with
feathery margins.
Two representative isolates, CGMCC 3.15214 and
CGMCC 3.15215, were selected for the pathogenicity
test and deposited in the China General Microbiological
Culture Collection Center (CGMCC). Three days after
441 Journal of Plant Protection Research
Characterization
55 (4), of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
Table 1. Sources of Guignardia and Phyllosticta isolates and GenBank accession numbers used in this study
Strain voucher Host Locality GenBank accession number
Speci number
ITS TEF ACT
Botryosphaeria obtusa CMW 8232 Conifers South Africa AY972105 DQ280419 AY972111
Guignardia bidwellii CBS 111645 Parthenocissus quinquefolia USA JN692542 JN692530 JN692518
(Vitaceae)
Phyllosticta aloeicola CPC 21020 Aloe ferox South Africa KF154280 KF289193 KF289311
P. capitalensis CBS 128856* Stanhopea sp. Brazil JF261465 JF261507 JF343647
P. citriasiana CBS 120486* Citrus maxima (Rutaceae) Thailand FJ538360 FJ538418 FJ538476
P. citribraziliensis CBS 100098* Citrus sp. (Rutaceae) Brazil FJ538352 FJ538410 FJ538468
P. citricarpa CBS 127454* Citrisx limon (Rutaceae) Australia JF343583 JF343604 JF343667
P. citrichinaensis CBS 130529* Citrus maxima (Rutaceae) China JN791597 JN791452 JN791526
P. citrimaxima CPC 20276* Citrus maxima Thailand KF170304 KF289222 KF289300
P. concentrica CBS 937.70* Hedera helix Italy FJ538350 FJ538408 KF289257
P. cordylinophila CPC 20261* Cordyline fruticosa (Asparagaceae) Thailand KF170287 KF289172 KF289295
P. cussonia CPC 14875* Cussonia sp. (Araliaceae) South Africa JF343579 JF343600 JF343663
P. ericarum CBS 132534* Erica gracilis (Ericaceae) South Africa JX069865 KF289227 KF289291
P. foliorum CBS 447.68 * Taxus baccata Netherlands KF170309 KF289201 KF289247
P. gaultheriae CBS 447.70* Gaultheria humifusa USA JN692543 JN692531 KF289248
P. hostae CGMCC 3.14355* Hosta plantaginea (Liliaceae) China JN692535 JN692523 JN692511
P. hostae CGMCC 3.14356 Hosta plantaginea (Liliaceae) China JN692536 JN692524 JN692512
P. hostae CGMCC 3.15214 Hymenocallis littoralis China JX524169 KJ094498 KJ094496
(Amaryllidaceae)
*indicates the ex-type cultures; CGMCC – China General Microbiological Culture Collection Center, China; CBS – Centra albureau
voor Schimmel cultures, Utrecht, The Netherlands; MUCC – Lab. of Plant Pathology, Mie University; GDOU – Lab. of Plant
Pathology, Guangdong Ocean University; CPC – Culture collection of P.W. Crous, housed at CBS
ITS – internal transcribed spacer; TEF – translation elongation factor; ACT – actin gene
442 Journal of Plant Protection Research
Characterization
55 (4), of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
Fig. 1. Typical foliar symptom of Phyllosticta leaf spot on Hymenocallis littoralis: A – small, circular or oval, brown-reddish to black
spots on leaves and the yellowing and blighting leaves at the tip; B – black pycnidia on diseased leaf; C – leaf with artificial
inoculation
inoculation with spore suspension, tiny water-soaked appendage, 5.8–48.1 (av. 15.9±6.6) × 1.3–2.1 (av.
spots appeared on the artificially inoculated positions. 1.7±0.2)
Gradually, the same symptoms developed as in nature
(Fig. 1C), whereas the control leaves did not develop any
symptoms. The water-soaked and discolored symptoms
occurred later when using the mycelial plus inoculation,
than with the spores suspension. The same morphologi-
cal fungi were re-isolated from these diseased tissues.
The isolates morphology characteristics were de-
scribed as below:
Phyllosticta hostae Y.Y. Su & L. Cai, Persoonia 28, 76–
84 (2012) (Fig. 2).
Conidiomata pycnidial, solitary, black, erumpent,
globose, separate or in small groups, embedded in a sub-
epidermal stroma on host, stromata globose to ampulli-
form, forming an irregularly folded crust on PDA, exud-
ing a colorless to opaque glossy conidial mass; pycnidia
41.6–150.3 (av. 92.3±22.4) µm in diam; pycnidial wall
consisting of several layers of brown textura angularis,
8.7–24.7 (av. 16.1±3.3) µm thick; ostiole single,
central,
15.1–36.0 (av. 25.5±5.2) µm wide, consisting of thickened,
brown cells. Conidiophores subcylindrical to doliiform,
frequently reduced to conidiogenous cells, coated in
a mucoid layer. Conidiogenous cells termina terminal,
subcylindrical to doliiform, hyaline, smooth, 6.3–23.8
(av. 14.3±3.3) × 2.3–6.8 (av. 4.4±0.9) µm. Conidia 5.2–
12.5
(av. 8.5±2.5) × 3.8–8.6 (av. 6.4±1.8) µm, solitary,
hyaline,
aseptate, thin- and smooth- walled, smoothly guttulate,
ellipsoid to obovoid, tapering toward a narrowly trun-
cate base, enclosed in a mucilaginous sheath, 1.8–4.0 (av.
2.1±0.5) µm thick, and bearing a hyaline, mucoid apical
µm, straight
443 to Plant
Journal of flexible, unbranched,
Protection tapering
Research 55 (4), towards
Characterization an
of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
acute apex; conidia length/width ratio 1.2–2.0 (av.
1.6±0.2).
Culture characteristics (in the dark, 25°C after 2
weeks): colonies reaching 74.2 mm diam. after 2 weeks
on MEA, 76.8 mm on PDA and 71.3 mm on CMA, but
only
55.3 mm on OA. Colonies on PDA were flat, the surface
was black in the centre, spreading, lobate, irregular with
feathery margin, sparse aerial mycelium, surface oliva-
ceous grey, and reverse black, olivaceous at margin.
Colo- nies on MEA were flat, spreading, irregular, with
smooth, lobate margin, and sparse aerial mycelium. The
surface was leaden to leaden-gray in colour. Colonies on
OA were flat, with feathery, lobate margins and sparse
aerial my- celium, olivaceous-black in the centre, pale
olivaceous in the outer region. Colonies on CMA were
flat, with feath- ery margins. The surface was dark in the
centre, and an olive colour in the outer regions. No
teleomorph was ob- served in agar (OA, PDA, MEA, and
CMA).
Based on a megablast search of NCBIs GenBank
nucleotide database, the closest hit using the ITS se-
quence of isolates CGMCC 3.15214 and CGMCC 3.15215
is P. hostae CGMCC 3.14357 [causing leaf spot of Hosta
plantaginea in China, GenBank JN692537; Identities =
= 549/552 (99.457%), Gaps = 2/552 (0.362%)]. A megablast
search of the NCBIs GenBank nucleotide sequence da-
tabase using the SSU sequence (GenBank JX524170) of
CGMCC 3.15214 confirms its placement in the genus;
closest hits included Guignardia sp. IFB-GLP-4 [Gen-
Bank GU380271; Identities = 1040/1063 (97.856%), Gaps =
= 19/1063 (1.787%)].
The thirty-five combined sequences from 30 taxa of
Phyllosticta (teleomorph: Guignardia) were phylogeneti-
444 Journal of Plant Protection Research
Characterization
55 (4), of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
Fig. 2. Morphological characteristics of pathogen causing Phyllosticta leaf spot disease on spider lily: A – symptoms with pycnidia
forming on leaf of Hymenocallis littoralis; B – an overlook of pycnidia with an ostiole in leaf tissue; C – vertical section of
pycnidium in leaf tissue; D – colony on PDA in the dark, 25°C, after 15 d; E–F – pycnidia forming on PDA; G – vertical
section of initial pycnidium on PDA; H–J – conidia with mucoid sheath and apical mucilaginous appendage, H–I – conidia
forming on host; J – conidia forming on PDA; K – spermatium. Scale Bars: C = 20 µm; F = 500 µm; G = 50 µm; H = 10 µm; I, J,
K = 20 µm
cally analysed using the combined ITS, ACT, and TEF bootstrap value and Bayesian posterior probability
dataset. Botryosphaeria obtusa CMW8232 was used as an (Fig. 3). The isolates also formed a heterogenous group
outgroup. The combined dataset comprised 1106 total with P. hymenocallidicola CBS 131309, which was isolated
characters including gaps, of which 548 characters were from H. littoralis and caused leaf spot and tip blight dis-
constant, 338 were parsimony informative, and 220 were ease (Crous et al. 2011).
variable and parsimony-uninformative. Phylogenetically, the isolates of CGMCC 3.15214,
Phylogenetic analysis using NJ, MP, and Bayes- CGMCC 3.15215, and GDOU201203 clustered together
ian inference yielded evolutionary trees with identical with Phyllosticta hostae isolates based on all three of the
topology, which represented the evolutionary history gene regions sequenced. Three fixed nucleotide changes
of Phyllosticta taxa. The isolates of CGMCC 3.15214, were observed over 548 nucleotides for ITS; whereas
CGMCC 3.15215, and GDOU201203 formed a mono- TEF1 only contained one fixed nucleotide change over
phyletic group with P. hostae CGMCC3.14355 and 258 nucleotides, and ACT had only 3 fixed nucleotide
CGMCC3.14356,which was strong supported by the changes and 3 indels over 232 nucleotides (Table 2).
445 Journal of Plant Protection Research
Characterization
55 (4), of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
Fig. 3. Phylogenetic tree of Phyllosticta species reconstructed by neighbor-joining (NJ), maximum parsimony (MP) and Bayesian
inference (BI) using the combined internal transcribed spacer (ITS), partial actin gene (ACT) and translation elongation factor
(TEF) dataset. The numbers along the branches indicate posterior probability values (%) or bootstrap percentages resulting
from different analyses in the order: BI/MP/NJ. The values lower than 50 are given as “–” except for NJ
Table 2. Nucleotide differences and their base positions observed in three loci among the isolates of Phyllosticta hostae. Sequences of
CGMCC3.14355 were used as references to calculate base positions, which do not include spaces caused by alignment gaps
ITS – internal transcribed spacer; ACT – partial actin gene; TEF – translation elongation factor
446 Journal of Plant Protection Research
Characterization
55 (4), of Phyllosticta hostae causing Phyllosticta leaf spot on spider lily in China
P. amaryllidicola Amaryllis sp. 120–150 2–6 × 1.5–4 9–12 × 5.5–7.5 4–7 Van der Aa 1973
Hymenocallis (8–)9–10(–11) ×
P. hymenocallidicola littoralis 200 7–15 × 3–4 × (6–)6.5–7 3–5(–8) × 1.5(–2) Crous et al. 2011
P. hostae Hosta plantaginea 40–150 7–22 × 2–5 8–15 × 5–9 4–8 × 1–3 Su and Cai 2012
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